Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07464.t1 | XP_013468822.1 | 99.6 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 3.20E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07464.t1 | A0A072VLL2 | 99.6 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 2.3e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057246 | MS.gene07464 | -0.822177 | 2.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07464.t1 | MTR_1g077210 | 99.578 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 2.59e-175 | 481 |
| MS.gene07464.t1 | MTR_0054s0080 | 72.996 | 237 | 59 | 3 | 1 | 237 | 1 | 232 | 3.14e-126 | 357 |
| MS.gene07464.t1 | MTR_3g109280 | 74.775 | 222 | 54 | 1 | 1 | 222 | 1 | 220 | 5.91e-121 | 343 |
| MS.gene07464.t1 | MTR_1g009030 | 68.776 | 237 | 54 | 2 | 1 | 237 | 1 | 217 | 3.57e-114 | 326 |
| MS.gene07464.t1 | MTR_6g066040 | 59.556 | 225 | 89 | 1 | 1 | 225 | 1 | 223 | 2.84e-98 | 286 |
| MS.gene07464.t1 | MTR_6g066090 | 59.589 | 146 | 57 | 1 | 74 | 219 | 1 | 144 | 1.03e-55 | 175 |
| MS.gene07464.t1 | MTR_5g068640 | 38.914 | 221 | 128 | 3 | 5 | 219 | 3 | 222 | 4.78e-51 | 167 |
| MS.gene07464.t1 | MTR_8g106520 | 39.904 | 208 | 118 | 2 | 8 | 215 | 6 | 206 | 7.27e-44 | 147 |
| MS.gene07464.t1 | MTR_7g073370 | 36.493 | 211 | 129 | 1 | 7 | 217 | 6 | 211 | 1.24e-35 | 126 |
| MS.gene07464.t1 | MTR_8g106530 | 35.071 | 211 | 126 | 3 | 7 | 215 | 6 | 207 | 3.76e-34 | 128 |
| MS.gene07464.t1 | MTR_8g106530 | 35.583 | 163 | 89 | 4 | 57 | 215 | 312 | 462 | 2.07e-17 | 80.9 |
| MS.gene07464.t1 | MTR_2g014820 | 33.641 | 217 | 132 | 6 | 1 | 214 | 644 | 851 | 2.87e-28 | 112 |
| MS.gene07464.t1 | MTR_8g106520 | 37.821 | 156 | 90 | 2 | 60 | 215 | 2 | 150 | 7.91e-25 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07464.t1 | AT4G31330 | 70.909 | 220 | 60 | 2 | 1 | 216 | 1 | 220 | 4.64e-111 | 319 |
| MS.gene07464.t1 | AT5G10580 | 63.525 | 244 | 81 | 2 | 1 | 236 | 1 | 244 | 7.10e-108 | 311 |
| MS.gene07464.t1 | AT5G10580 | 63.525 | 244 | 81 | 2 | 1 | 236 | 1 | 244 | 7.10e-108 | 311 |
| MS.gene07464.t1 | AT5G10580 | 62.810 | 242 | 84 | 1 | 1 | 236 | 1 | 242 | 9.34e-107 | 308 |
| MS.gene07464.t1 | AT5G24790 | 58.369 | 233 | 94 | 1 | 1 | 230 | 1 | 233 | 4.65e-89 | 263 |
| MS.gene07464.t1 | AT5G10580 | 64.324 | 185 | 60 | 1 | 1 | 179 | 1 | 185 | 1.87e-83 | 247 |
| MS.gene07464.t1 | AT5G24600 | 36.486 | 222 | 129 | 2 | 4 | 215 | 2 | 221 | 4.14e-45 | 151 |
| MS.gene07464.t1 | AT5G24600 | 36.036 | 222 | 130 | 3 | 4 | 215 | 2 | 221 | 4.31e-45 | 151 |
| MS.gene07464.t1 | AT3G18215 | 39.906 | 213 | 126 | 1 | 3 | 215 | 2 | 212 | 8.66e-45 | 150 |
| MS.gene07464.t1 | AT5G43180 | 31.222 | 221 | 139 | 2 | 9 | 216 | 8 | 228 | 2.05e-29 | 110 |
| MS.gene07464.t1 | AT5G46060 | 34.742 | 213 | 133 | 2 | 4 | 215 | 6 | 213 | 2.05e-21 | 89.7 |
| MS.gene07464.t1 | AT3G18215 | 37.324 | 142 | 87 | 1 | 74 | 215 | 1 | 140 | 3.49e-20 | 84.7 |
Find 53 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCAATGATTCCATTTA+TGG | 0.062471 | 1.2:-63377548 | MS.gene07464:CDS |
| GATTCCAGTGCTTTATAATT+TGG | 0.112917 | 1.2:-63377234 | MS.gene07464:CDS |
| GCTAGTACCCTTAGGATTTA+TGG | 0.125160 | 1.2:-63380907 | MS.gene07464:CDS |
| CAACCTTCTTCCACCATAAT+TGG | 0.152030 | 1.2:-63380840 | MS.gene07464:CDS |
| ATGAGTATTGATTCCAATTA+TGG | 0.174514 | 1.2:+63380827 | None:intergenic |
| TGAATATTTGTCTGAGCTTT+TGG | 0.189699 | 1.2:-63377366 | MS.gene07464:CDS |
| TGGAGCTCATAGTGAATTTA+TGG | 0.212693 | 1.2:-63377528 | MS.gene07464:CDS |
| GGAATGGAGGAAATATTATT+TGG | 0.236173 | 1.2:-63380937 | MS.gene07464:CDS |
| AACCCTACGTAATCTAATAA+TGG | 0.254699 | 1.2:-63377654 | MS.gene07464:CDS |
| TTCACTATGAGCTCCATAAA+TGG | 0.279592 | 1.2:+63377535 | None:intergenic |
| CATCTTGTGGTGTGCAAATA+AGG | 0.279736 | 1.2:+63377414 | None:intergenic |
| TCTGTCACACATTGTCCATT+AGG | 0.321977 | 1.2:-63377457 | MS.gene07464:CDS |
| TTATTTATCATGTTTGGTTA+TGG | 0.322182 | 1.2:-63380878 | MS.gene07464:CDS |
| TAATAATTATTTATCATGTT+TGG | 0.349604 | 1.2:-63380884 | MS.gene07464:CDS |
| TCATGTTTGGTTATGGCATA+AGG | 0.361370 | 1.2:-63380871 | MS.gene07464:CDS |
| AATAATGGGATCAACACTTA+TGG | 0.371912 | 1.2:-63377639 | MS.gene07464:CDS |
| CATTCTACTCTCAGCTGGTT+TGG | 0.383869 | 1.2:-63377606 | MS.gene07464:CDS |
| TTGGACTTTGTTTGTGGGAA+TGG | 0.387422 | 1.2:-63377215 | MS.gene07464:CDS |
| GATGCTTTGCTAGTACCCTT+AGG | 0.394945 | 1.2:-63380915 | MS.gene07464:CDS |
| ATACTCATGGAAGACGTTCT+TGG | 0.396125 | 1.2:-63380812 | MS.gene07464:CDS |
| TATAATTTGGACTTTGTTTG+TGG | 0.396446 | 1.2:-63377221 | MS.gene07464:CDS |
| TTGGATCTTTGGACCTGTCT+TGG | 0.400498 | 1.2:-63377279 | MS.gene07464:CDS |
| ACCCTACGTAATCTAATAAT+GGG | 0.403558 | 1.2:-63377653 | MS.gene07464:CDS |
| CCAAAGATCCAAAGCAAAAG+AGG | 0.411193 | 1.2:+63377290 | None:intergenic |
| AAAAGCTCAGACAAATATTC+AGG | 0.422507 | 1.2:+63377368 | None:intergenic |
| TACTCATGGAAGACGTTCTT+GGG | 0.430259 | 1.2:-63380811 | MS.gene07464:CDS |
| ATAATTTGGACTTTGTTTGT+GGG | 0.446470 | 1.2:-63377220 | MS.gene07464:CDS |
| ATGAGAATAAGAATATAGTT+AGG | 0.446792 | 1.2:+63377483 | None:intergenic |
| AATTATTACCATAAATCCTA+AGG | 0.460180 | 1.2:+63380899 | None:intergenic |
| TTAAATTCATTGAGATGGAA+TGG | 0.471173 | 1.2:-63380953 | None:intergenic |
| ATTCCAATTATGGTGGAAGA+AGG | 0.483440 | 1.2:+63380837 | None:intergenic |
| TGCAAATAAGGATGCTCACT+TGG | 0.496404 | 1.2:+63377426 | None:intergenic |
| TTGGGTCCCTTCCATGCTCA+AGG | 0.503669 | 1.2:-63380793 | MS.gene07464:intron |
| TCCCATTATTAGATTACGTA+GGG | 0.517944 | 1.2:+63377652 | None:intergenic |
| ACATCCATTCTACTCTCAGC+TGG | 0.523277 | 1.2:-63377611 | MS.gene07464:CDS |
| AAGTCCAAATTATAAAGCAC+TGG | 0.539896 | 1.2:+63377230 | None:intergenic |
| GAACACAAGAAAACCAAGAC+AGG | 0.547850 | 1.2:+63377266 | None:intergenic |
| ATAATTGGAATCAATACTCA+TGG | 0.558823 | 1.2:-63380825 | MS.gene07464:CDS |
| CAAACCAGCTGAGAGTAGAA+TGG | 0.570136 | 1.2:+63377607 | None:intergenic |
| AGTATTGATTCCAATTATGG+TGG | 0.573967 | 1.2:+63380830 | None:intergenic |
| ATACGTACCTTGAGCATGGA+AGG | 0.578376 | 1.2:+63380786 | None:intergenic |
| AATTCATTGAGATGGAATGG+AGG | 0.581096 | 1.2:-63380950 | None:intergenic |
| GTGAAGATTAATGACAAAGG+AGG | 0.586414 | 1.2:-63377179 | MS.gene07464:CDS |
| TTGTATACGTACCTTGAGCA+TGG | 0.589777 | 1.2:+63380782 | None:intergenic |
| ATTATTACCATAAATCCTAA+GGG | 0.600219 | 1.2:+63380900 | None:intergenic |
| CAAAGATCCAAAGCAAAAGA+GGG | 0.615516 | 1.2:+63377291 | None:intergenic |
| GCATAGGACAAGACATCTTG+TGG | 0.640111 | 1.2:+63377401 | None:intergenic |
| CCATAAATGGAATCATTGAG+AGG | 0.651845 | 1.2:+63377548 | None:intergenic |
| TACGTACCTTGAGCATGGAA+GGG | 0.652973 | 1.2:+63380787 | None:intergenic |
| ATTGTGAAGATTAATGACAA+AGG | 0.655961 | 1.2:-63377182 | MS.gene07464:CDS |
| TACGTAGGGTTTGAACAGCT+AGG | 0.661798 | 1.2:+63377666 | None:intergenic |
| ATCCCATTATTAGATTACGT+AGG | 0.669460 | 1.2:+63377651 | None:intergenic |
| TTCAGGTGTGATGACAGCAT+AGG | 0.682375 | 1.2:+63377385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAACAATATATTTATT+TGG | - | chr1.2:63379089-63379108 | MS.gene07464:intron | 10.0% |
| !! | ATATATATATATATATAAGC+GGG | - | chr1.2:63377610-63377629 | MS.gene07464:CDS | 10.0% |
| !! | ATTAAGAAATAAATAAAAAC+AGG | + | chr1.2:63380023-63380042 | None:intergenic | 10.0% |
| !! | TAATAATTATTTATCATGTT+TGG | - | chr1.2:63377218-63377237 | MS.gene07464:CDS | 10.0% |
| !!! | GATTATTTATTTATTTTTTG+AGG | + | chr1.2:63379367-63379386 | None:intergenic | 10.0% |
| !! | AAATAAAAACAGGTAAATAA+TGG | + | chr1.2:63380013-63380032 | None:intergenic | 15.0% |
| !! | ATCAATTTATAAATCAACTT+AGG | + | chr1.2:63379696-63379715 | None:intergenic | 15.0% |
| !! | TATATATATATATATAAGCG+GGG | - | chr1.2:63377611-63377630 | MS.gene07464:CDS | 15.0% |
| !! | TATTGTATATATATCAAACA+AGG | + | chr1.2:63378068-63378087 | None:intergenic | 15.0% |
| !! | TATTGTTAGTTATGTTAATA+TGG | - | chr1.2:63378822-63378841 | MS.gene07464:intron | 15.0% |
| !! | TCTATATGGAATATAAATTT+AGG | + | chr1.2:63380165-63380184 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | + | chr1.2:63380260-63380279 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATACTCAAGTAA+TGG | - | chr1.2:63378482-63378501 | MS.gene07464:intron | 15.0% |
| !! | AATAATCACTCATTATAAGA+TGG | - | chr1.2:63378360-63378379 | MS.gene07464:intron | 20.0% |
| !! | AATTATTACCATAAATCCTA+AGG | + | chr1.2:63377206-63377225 | None:intergenic | 20.0% |
| !! | ATGAGAATAAGAATATAGTT+AGG | + | chr1.2:63380622-63380641 | None:intergenic | 20.0% |
| !! | ATTACTCAAGAAAAAGAATT+TGG | - | chr1.2:63378437-63378456 | MS.gene07464:intron | 20.0% |
| !! | ATTATTACCATAAATCCTAA+GGG | + | chr1.2:63377205-63377224 | None:intergenic | 20.0% |
| !! | TAAAATATTGAACTCAAATC+AGG | - | chr1.2:63378667-63378686 | MS.gene07464:intron | 20.0% |
| !! | TAATGTAACTTGAAGTTATT+AGG | - | chr1.2:63380039-63380058 | MS.gene07464:intron | 20.0% |
| !! | TAGTTATGTTAATATGGAAT+GGG | - | chr1.2:63378828-63378847 | MS.gene07464:intron | 20.0% |
| !! | TCTATTAGATAGTAAGTAAT+TGG | - | chr1.2:63378409-63378428 | MS.gene07464:intron | 20.0% |
| !! | TCTCTTTCATTTGTATATTA+TGG | + | chr1.2:63377894-63377913 | None:intergenic | 20.0% |
| !! | TGGAGTAATTTAACTATTTA+AGG | + | chr1.2:63379286-63379305 | None:intergenic | 20.0% |
| !! | TTAGAGAATCTTTATACAAT+TGG | - | chr1.2:63379530-63379549 | MS.gene07464:intron | 20.0% |
| !! | TTAGTTATGTTAATATGGAA+TGG | - | chr1.2:63378827-63378846 | MS.gene07464:intron | 20.0% |
| !! | TTATTTATCATGTTTGGTTA+TGG | - | chr1.2:63377224-63377243 | MS.gene07464:CDS | 20.0% |
| !! | TTGTCTTTACATATATTAGT+AGG | + | chr1.2:63378119-63378138 | None:intergenic | 20.0% |
| !! | TTTATATTGTCCTTAGTTAA+AGG | + | chr1.2:63377513-63377532 | None:intergenic | 20.0% |
| !!! | CGTGTGAAAAAATATATTTT+TGG | + | chr1.2:63377360-63377379 | None:intergenic | 20.0% |
| !!! | TATCATAAAAAGTACTCATT+CGG | - | chr1.2:63378027-63378046 | MS.gene07464:intron | 20.0% |
| !!! | TGATTTGAGTTCAATATTTT+AGG | + | chr1.2:63378668-63378687 | None:intergenic | 20.0% |
| !!! | TGATTTTGACCAATTAAAAA+GGG | + | chr1.2:63378801-63378820 | None:intergenic | 20.0% |
| !!! | TTGATTTTGACCAATTAAAA+AGG | + | chr1.2:63378802-63378821 | None:intergenic | 20.0% |
| !!! | TTTTCGTAATAAATACAAAG+TGG | - | chr1.2:63377966-63377985 | MS.gene07464:intron | 20.0% |
| ! | AAACAAAAAATAATCCCACA+TGG | - | chr1.2:63379403-63379422 | MS.gene07464:intron | 25.0% |
| ! | AAATTCTTTAATGCAAATGC+AGG | - | chr1.2:63379572-63379591 | MS.gene07464:intron | 25.0% |
| ! | AACGTTCAAAAAATGTCTAT+TGG | + | chr1.2:63378982-63379001 | None:intergenic | 25.0% |
| ! | AAGAAATTTCAATCAGACTA+GGG | + | chr1.2:63378772-63378791 | None:intergenic | 25.0% |
| ! | ACCAATTAATGTAACATAAG+TGG | + | chr1.2:63377435-63377454 | None:intergenic | 25.0% |
| ! | ACCACTTATGTTACATTAAT+TGG | - | chr1.2:63377431-63377450 | MS.gene07464:CDS | 25.0% |
| ! | ACTATCTGATAGATATTTAG+TGG | - | chr1.2:63380129-63380148 | MS.gene07464:intron | 25.0% |
| ! | AGAATCTTTATACAATTGGT+TGG | - | chr1.2:63379534-63379553 | MS.gene07464:intron | 25.0% |
| ! | ATAAATGCATCTAAGTGATA+AGG | + | chr1.2:63378901-63378920 | None:intergenic | 25.0% |
| ! | ATAATCTCTTTCGCATATAA+TGG | + | chr1.2:63380097-63380116 | None:intergenic | 25.0% |
| ! | ATAATTGGAATCAATACTCA+TGG | - | chr1.2:63377277-63377296 | MS.gene07464:CDS | 25.0% |
| ! | ATGATCGATGTTTATCAATT+TGG | - | chr1.2:63379472-63379491 | MS.gene07464:intron | 25.0% |
| ! | ATTGTGAAGATTAATGACAA+AGG | - | chr1.2:63380920-63380939 | MS.gene07464:CDS | 25.0% |
| ! | TTTGTCTTTACACATTAAGT+GGG | - | chr1.2:63379772-63379791 | MS.gene07464:intron | 25.0% |
| !! | ATAATTTGGACTTTGTTTGT+GGG | - | chr1.2:63380882-63380901 | MS.gene07464:CDS | 25.0% |
| !! | TATAATTTGGACTTTGTTTG+TGG | - | chr1.2:63380881-63380900 | MS.gene07464:CDS | 25.0% |
| !! | TTTTTATACTCAAGTAATGG+CGG | - | chr1.2:63378485-63378504 | MS.gene07464:intron | 25.0% |
| !!! | AGACATTTTTTGAACGTTAT+TGG | - | chr1.2:63378984-63379003 | MS.gene07464:intron | 25.0% |
| !!! | ATGAGTATTGATTCCAATTA+TGG | + | chr1.2:63377278-63377297 | None:intergenic | 25.0% |
| !!! | CATTCTAGTTCTAGTATATA+TGG | + | chr1.2:63378534-63378553 | None:intergenic | 25.0% |
| !!! | TGTTTAAGTTTTCGATCATT+TGG | + | chr1.2:63377408-63377427 | None:intergenic | 25.0% |
| !!! | TGTTTATTTTCCCTTTGAAT+TGG | + | chr1.2:63379242-63379261 | None:intergenic | 25.0% |
| AAAAGCTCAGACAAATATTC+AGG | + | chr1.2:63380737-63380756 | None:intergenic | 30.0% | |
| AAAATGTCTAGTCTAGTTGA+AGG | + | chr1.2:63378273-63378292 | None:intergenic | 30.0% | |
| AACCCTACGTAATCTAATAA+TGG | - | chr1.2:63380448-63380467 | MS.gene07464:intron | 30.0% | |
| AACTACAACGAATCCTATTT+CGG | + | chr1.2:63377686-63377705 | None:intergenic | 30.0% | |
| AACTTTGCATGCTTTCTATA+TGG | + | chr1.2:63380179-63380198 | None:intergenic | 30.0% | |
| AAGATATTGCTCTAGCTAAA+TGG | - | chr1.2:63379426-63379445 | MS.gene07464:intron | 30.0% | |
| AAGTCCAAATTATAAAGCAC+TGG | + | chr1.2:63380875-63380894 | None:intergenic | 30.0% | |
| ACAAAAAAAAACTACGTGCA+TGG | - | chr1.2:63377828-63377847 | MS.gene07464:intron | 30.0% | |
| ACCCTACGTAATCTAATAAT+GGG | - | chr1.2:63380449-63380468 | MS.gene07464:intron | 30.0% | |
| ATAATGGTTACTTGACTATC+TGG | + | chr1.2:63380081-63380100 | None:intergenic | 30.0% | |
| ATCCCATTATTAGATTACGT+AGG | + | chr1.2:63380454-63380473 | None:intergenic | 30.0% | |
| ATCTATCTAGATCATCTCTT+TGG | - | chr1.2:63379922-63379941 | MS.gene07464:intron | 30.0% | |
| ATGTGTCATATTCATGTTTC+TGG | - | chr1.2:63379733-63379752 | MS.gene07464:intron | 30.0% | |
| CATCACTTTCTCATAAAAGT+GGG | - | chr1.2:63379616-63379635 | MS.gene07464:intron | 30.0% | |
| CTGGATCTATATATAACTCA+CGG | + | chr1.2:63379205-63379224 | None:intergenic | 30.0% | |
| GAAGAAATTTCAATCAGACT+AGG | + | chr1.2:63378773-63378792 | None:intergenic | 30.0% | |
| GAAGTCAAAAACTCTCATTA+CGG | + | chr1.2:63378953-63378972 | None:intergenic | 30.0% | |
| GACAAATGTTTGCATATAAG+AGG | - | chr1.2:63378134-63378153 | MS.gene07464:intron | 30.0% | |
| GATTCCAGTGCTTTATAATT+TGG | - | chr1.2:63380868-63380887 | MS.gene07464:CDS | 30.0% | |
| GGAATGGAGGAAATATTATT+TGG | - | chr1.2:63377165-63377184 | MS.gene07464:CDS | 30.0% | |
| GGAATTGTTTAATCAACCTT+TGG | + | chr1.2:63379808-63379827 | None:intergenic | 30.0% | |
| GTATATATATCAAACAAGGC+CGG | + | chr1.2:63378064-63378083 | None:intergenic | 30.0% | |
| GTTTGTCTTTACACATTAAG+TGG | - | chr1.2:63379771-63379790 | MS.gene07464:intron | 30.0% | |
| TATCTTGACTGCATGAATAT+GGG | + | chr1.2:63377717-63377736 | None:intergenic | 30.0% | |
| TCCCATTATTAGATTACGTA+GGG | + | chr1.2:63380453-63380472 | None:intergenic | 30.0% | |
| TCGACATATATGAAGTGATT+CGG | + | chr1.2:63379158-63379177 | None:intergenic | 30.0% | |
| TCTTTATACAATTGGTTGGT+TGG | - | chr1.2:63379538-63379557 | MS.gene07464:intron | 30.0% | |
| TGACCAATTAAAAAGGGTTA+AGG | + | chr1.2:63378795-63378814 | None:intergenic | 30.0% | |
| TTGTCTTTACACATTAAGTG+GGG | - | chr1.2:63379773-63379792 | MS.gene07464:intron | 30.0% | |
| ! | AATAATGGGATCAACACTTA+TGG | - | chr1.2:63380463-63380482 | MS.gene07464:intron | 30.0% |
| ! | AGCCAGAAATTTTAGATTGT+GGG | - | chr1.2:63377762-63377781 | MS.gene07464:intron | 30.0% |
| ! | AGGTTGATTAAACAATTCCA+AGG | - | chr1.2:63379809-63379828 | MS.gene07464:intron | 30.0% |
| ! | CACTTCATTTTGTTCATTAC+AGG | - | chr1.2:63380394-63380413 | MS.gene07464:intron | 30.0% |
| ! | CACTTTTATGAGAAAGTGAT+GGG | + | chr1.2:63379617-63379636 | None:intergenic | 30.0% |
| ! | CAGGTTCTTTTTGCAAAATA+TGG | - | chr1.2:63379591-63379610 | MS.gene07464:intron | 30.0% |
| ! | CTTCCTTAACCCTTTTTAAT+TGG | - | chr1.2:63378789-63378808 | MS.gene07464:intron | 30.0% |
| ! | TGAATATTTGTCTGAGCTTT+TGG | - | chr1.2:63380736-63380755 | MS.gene07464:intron | 30.0% |
| ! | TGCACTTTTCATTTTCAACA+CGG | + | chr1.2:63379316-63379335 | None:intergenic | 30.0% |
| ! | TTATTTTCCCTTTGAATTGG+TGG | + | chr1.2:63379239-63379258 | None:intergenic | 30.0% |
| !! | AGTATTGATTCCAATTATGG+TGG | + | chr1.2:63377275-63377294 | None:intergenic | 30.0% |
| !! | TAGGAGTGTGACATATTTTA+GGG | + | chr1.2:63380603-63380622 | None:intergenic | 30.0% |
| !! | TTAGGAGTGTGACATATTTT+AGG | + | chr1.2:63380604-63380623 | None:intergenic | 30.0% |
| !!! | ACTATCTGGTTTTTAGGTAA+AGG | + | chr1.2:63380067-63380086 | None:intergenic | 30.0% |
| !!! | TACTTGACTATCTGGTTTTT+AGG | + | chr1.2:63380073-63380092 | None:intergenic | 30.0% |
| !!! | TGCACGTAGTTTTTTTTTGT+TGG | + | chr1.2:63377828-63377847 | None:intergenic | 30.0% |
| AAAGTTATGAAGTACGGACA+CGG | - | chr1.2:63380193-63380212 | MS.gene07464:intron | 35.0% | |
| AAGTGATAAGGCAAGAGATA+TGG | + | chr1.2:63378889-63378908 | None:intergenic | 35.0% | |
| ACATCGATCATACCAAAAGT+AGG | + | chr1.2:63379463-63379482 | None:intergenic | 35.0% | |
| ACGCTCATATATATATGCCT+TGG | + | chr1.2:63379829-63379848 | None:intergenic | 35.0% | |
| ACTACAACGAATCCTATTTC+GGG | + | chr1.2:63377685-63377704 | None:intergenic | 35.0% | |
| ATAAGGCAAGAGATATGGTT+TGG | + | chr1.2:63378884-63378903 | None:intergenic | 35.0% | |
| ATCGATCATACCAAAAGTAG+GGG | + | chr1.2:63379461-63379480 | None:intergenic | 35.0% | |
| ATCTTGACTGCATGAATATG+GGG | + | chr1.2:63377716-63377735 | None:intergenic | 35.0% | |
| CAAAGATCCAAAGCAAAAGA+GGG | + | chr1.2:63380814-63380833 | None:intergenic | 35.0% | |
| CACTTGGTTGAAAAACCTAA+TGG | + | chr1.2:63380663-63380682 | None:intergenic | 35.0% | |
| CATCGATCATACCAAAAGTA+GGG | + | chr1.2:63379462-63379481 | None:intergenic | 35.0% | |
| CCATAAATGGAATCATTGAG+AGG | + | chr1.2:63380557-63380576 | None:intergenic | 35.0% | |
| CCATCACTTTCTCATAAAAG+TGG | - | chr1.2:63379615-63379634 | MS.gene07464:intron | 35.0% | |
| CCTCTCAATGATTCCATTTA+TGG | - | chr1.2:63380554-63380573 | MS.gene07464:intron | 35.0% | |
| CTCAAGGTACGTATACAATT+GGG | - | chr1.2:63377325-63377344 | MS.gene07464:CDS | 35.0% | |
| GCATGCAAAGTTATGAAGTA+CGG | - | chr1.2:63380187-63380206 | MS.gene07464:intron | 35.0% | |
| GTATCTTGACTGCATGAATA+TGG | + | chr1.2:63377718-63377737 | None:intergenic | 35.0% | |
| GTGAAGATTAATGACAAAGG+AGG | - | chr1.2:63380923-63380942 | MS.gene07464:CDS | 35.0% | |
| GTTCGAAGATCCTTTAACTA+AGG | - | chr1.2:63377500-63377519 | MS.gene07464:CDS | 35.0% | |
| TAAGGCAAGAGATATGGTTT+GGG | + | chr1.2:63378883-63378902 | None:intergenic | 35.0% | |
| TAGAGCAATATCTTCCATGT+GGG | + | chr1.2:63379420-63379439 | None:intergenic | 35.0% | |
| TATCTAGATCATCTCTTTGG+TGG | - | chr1.2:63379925-63379944 | MS.gene07464:intron | 35.0% | |
| TCATGTTTGGTTATGGCATA+AGG | - | chr1.2:63377231-63377250 | MS.gene07464:CDS | 35.0% | |
| TCATTCGGTCCTAAAATTAC+CGG | - | chr1.2:63378042-63378061 | MS.gene07464:intron | 35.0% | |
| TGGAGCTCATAGTGAATTTA+TGG | - | chr1.2:63380574-63380593 | MS.gene07464:intron | 35.0% | |
| TGTGTAAAGACAAACCATCA+TGG | + | chr1.2:63379766-63379785 | None:intergenic | 35.0% | |
| TTCACTATGAGCTCCATAAA+TGG | + | chr1.2:63380570-63380589 | None:intergenic | 35.0% | |
| ! | ATTCCAATTATGGTGGAAGA+AGG | + | chr1.2:63377268-63377287 | None:intergenic | 35.0% |
| ! | CCAGAAATTTTAGATTGTGG+GGG | - | chr1.2:63377764-63377783 | MS.gene07464:intron | 35.0% |
| ! | GAGCCAGAAATTTTAGATTG+TGG | - | chr1.2:63377761-63377780 | MS.gene07464:intron | 35.0% |
| ! | GCCAGAAATTTTAGATTGTG+GGG | - | chr1.2:63377763-63377782 | MS.gene07464:intron | 35.0% |
| ! | GTGTTTGAGATCAAAGTGTA+TGG | - | chr1.2:63379849-63379868 | MS.gene07464:intron | 35.0% |
| !! | AAGTGGGTTAGTAAATCCAT+AGG | - | chr1.2:63379632-63379651 | MS.gene07464:intron | 35.0% |
| !! | ATTTTCAACACGGTTGATTC+TGG | + | chr1.2:63379306-63379325 | None:intergenic | 35.0% |
| !! | CCACTTTTATGAGAAAGTGA+TGG | + | chr1.2:63379618-63379637 | None:intergenic | 35.0% |
| !!! | GTCAACACACTTTTTTCCTA+TGG | + | chr1.2:63379651-63379670 | None:intergenic | 35.0% |
| !!! | TGACTACTTTGTTTTGCTGA+CGG | - | chr1.2:63378724-63378743 | MS.gene07464:intron | 35.0% |
| !!! | TGGACTAGTTTTGATACGAT+GGG | - | chr1.2:63378457-63378476 | MS.gene07464:intron | 35.0% |
| !!! | TTGGACTAGTTTTGATACGA+TGG | - | chr1.2:63378456-63378475 | MS.gene07464:intron | 35.0% |
| !!! | TTTTTTCACACGCATTGACT+AGG | - | chr1.2:63377368-63377387 | MS.gene07464:CDS | 35.0% |
| AAGCCTCGAGAAACACTTAT+TGG | + | chr1.2:63379051-63379070 | None:intergenic | 40.0% | |
| AAGGCAAGAGATATGGTTTG+GGG | + | chr1.2:63378882-63378901 | None:intergenic | 40.0% | |
| AAGGTACGTATACAATTGGG+AGG | - | chr1.2:63377328-63377347 | MS.gene07464:CDS | 40.0% | |
| ACCTTTGCATCTATGAAGCA+CGG | + | chr1.2:63380358-63380377 | None:intergenic | 40.0% | |
| AGCCTCGAGAAACACTTATT+GGG | + | chr1.2:63379050-63379069 | None:intergenic | 40.0% | |
| ATAAGTCGTCTGATCAGTAG+CGG | - | chr1.2:63377739-63377758 | MS.gene07464:intron | 40.0% | |
| ATACTCATGGAAGACGTTCT+TGG | - | chr1.2:63377290-63377309 | MS.gene07464:CDS | 40.0% | |
| ATTTGATCATGATCAGACGC+AGG | + | chr1.2:63378607-63378626 | None:intergenic | 40.0% | |
| CAACCTTCTTCCACCATAAT+TGG | - | chr1.2:63377262-63377281 | MS.gene07464:CDS | 40.0% | |
| CATCTTGTGGTGTGCAAATA+AGG | + | chr1.2:63380691-63380710 | None:intergenic | 40.0% | |
| CCAAAGATCCAAAGCAAAAG+AGG | + | chr1.2:63380815-63380834 | None:intergenic | 40.0% | |
| CCTATTTCGGGATCTCAATA+GGG | + | chr1.2:63377673-63377692 | None:intergenic | 40.0% | |
| CTAGAGCAATATCTTCCATG+TGG | + | chr1.2:63379421-63379440 | None:intergenic | 40.0% | |
| GAACACAAGAAAACCAAGAC+AGG | + | chr1.2:63380839-63380858 | None:intergenic | 40.0% | |
| GCTAGTACCCTTAGGATTTA+TGG | - | chr1.2:63377195-63377214 | MS.gene07464:CDS | 40.0% | |
| GCTCAAGGTACGTATACAAT+TGG | - | chr1.2:63377324-63377343 | MS.gene07464:CDS | 40.0% | |
| TACTCATGGAAGACGTTCTT+GGG | - | chr1.2:63377291-63377310 | MS.gene07464:CDS | 40.0% | |
| TCCTATTTCGGGATCTCAAT+AGG | + | chr1.2:63377674-63377693 | None:intergenic | 40.0% | |
| TCGATCATACCAAAAGTAGG+GGG | + | chr1.2:63379460-63379479 | None:intergenic | 40.0% | |
| TCTGTCACACATTGTCCATT+AGG | - | chr1.2:63380645-63380664 | MS.gene07464:intron | 40.0% | |
| TGCAAATAAGGATGCTCACT+TGG | + | chr1.2:63380679-63380698 | None:intergenic | 40.0% | |
| TTGTATACGTACCTTGAGCA+TGG | + | chr1.2:63377323-63377342 | None:intergenic | 40.0% | |
| TTTGATCATGATCAGACGCA+GGG | + | chr1.2:63378606-63378625 | None:intergenic | 40.0% | |
| ! | AGACAAACCATCATGGATTG+TGG | + | chr1.2:63379759-63379778 | None:intergenic | 40.0% |
| ! | CAAACAAGGCCGGTAATTTT+AGG | + | chr1.2:63378054-63378073 | None:intergenic | 40.0% |
| ! | CCCCCACAATCTAAAATTTC+TGG | + | chr1.2:63377767-63377786 | None:intergenic | 40.0% |
| ! | GCTCTAGCTAAATGGATTTC+AGG | - | chr1.2:63379434-63379453 | MS.gene07464:intron | 40.0% |
| ! | TACAATTGGTTGGTTGGTGT+AGG | - | chr1.2:63379544-63379563 | MS.gene07464:intron | 40.0% |
| ! | TTGGACTTTGTTTGTGGGAA+TGG | - | chr1.2:63380887-63380906 | MS.gene07464:CDS | 40.0% |
| ! | TTGTCTGAGCTTTTGGACAA+AGG | - | chr1.2:63380743-63380762 | MS.gene07464:intron | 40.0% |
| !! | CCTCTTTTGCTTTGGATCTT+TGG | - | chr1.2:63380812-63380831 | MS.gene07464:CDS | 40.0% |
| !!! | ACGTCTGCATTTTGTTTTCG+TGG | - | chr1.2:63379669-63379688 | MS.gene07464:intron | 40.0% |
| !!! | GGAATTGTTTTGAGCACTGT+TGG | - | chr1.2:63380764-63380783 | MS.gene07464:intron | 40.0% |
| AAGTAATGGCGGCAGTTAGT+TGG | - | chr1.2:63378496-63378515 | MS.gene07464:intron | 45.0% | |
| ACATCCATTCTACTCTCAGC+TGG | - | chr1.2:63380491-63380510 | MS.gene07464:intron | 45.0% | |
| AGCTACAGCAAGCATTCTGT+GGG | + | chr1.2:63378579-63378598 | None:intergenic | 45.0% | |
| ATACGTACCTTGAGCATGGA+AGG | + | chr1.2:63377319-63377338 | None:intergenic | 45.0% | |
| ATTTCGGGATCTCAATAGGG+TGG | + | chr1.2:63377670-63377689 | None:intergenic | 45.0% | |
| CAAACCAGCTGAGAGTAGAA+TGG | + | chr1.2:63380498-63380517 | None:intergenic | 45.0% | |
| CATTCTACTCTCAGCTGGTT+TGG | - | chr1.2:63380496-63380515 | MS.gene07464:intron | 45.0% | |
| CCCTATTGAGATCCCGAAAT+AGG | - | chr1.2:63377670-63377689 | MS.gene07464:CDS | 45.0% | |
| CCTCGAGAAACACTTATTGG+GGG | + | chr1.2:63379048-63379067 | None:intergenic | 45.0% | |
| CTCGAGAAACACTTATTGGG+GGG | + | chr1.2:63379047-63379066 | None:intergenic | 45.0% | |
| CTCTATGAAGAATGCGAGTG+AGG | - | chr1.2:63377636-63377655 | MS.gene07464:CDS | 45.0% | |
| GAGCAAGCCACCAATTCAAA+GGG | - | chr1.2:63379229-63379248 | MS.gene07464:intron | 45.0% | |
| GATGCTTTGCTAGTACCCTT+AGG | - | chr1.2:63377187-63377206 | MS.gene07464:CDS | 45.0% | |
| GCATAGGACAAGACATCTTG+TGG | + | chr1.2:63380704-63380723 | None:intergenic | 45.0% | |
| GCCTCGAGAAACACTTATTG+GGG | + | chr1.2:63379049-63379068 | None:intergenic | 45.0% | |
| GGGGTGTGGTGTATGATAAT+GGG | + | chr1.2:63378862-63378881 | None:intergenic | 45.0% | |
| TAAGTGTTTCTCGAGGCTTC+TGG | - | chr1.2:63379052-63379071 | MS.gene07464:intron | 45.0% | |
| TACGTACCTTGAGCATGGAA+GGG | + | chr1.2:63377318-63377337 | None:intergenic | 45.0% | |
| TACGTAGGGTTTGAACAGCT+AGG | + | chr1.2:63380439-63380458 | None:intergenic | 45.0% | |
| TCCGTGCTTCATAGATGCAA+AGG | - | chr1.2:63380354-63380373 | MS.gene07464:intron | 45.0% | |
| TGAGCAAGCCACCAATTCAA+AGG | - | chr1.2:63379228-63379247 | MS.gene07464:intron | 45.0% | |
| TGTCGTTGTCATGTCAGTGT+AGG | - | chr1.2:63380302-63380321 | MS.gene07464:intron | 45.0% | |
| TTCAGGTGTGATGACAGCAT+AGG | + | chr1.2:63380720-63380739 | None:intergenic | 45.0% | |
| TTGATCATGATCAGACGCAG+GGG | + | chr1.2:63378605-63378624 | None:intergenic | 45.0% | |
| TTGGATCTTTGGACCTGTCT+TGG | - | chr1.2:63380823-63380842 | MS.gene07464:CDS | 45.0% | |
| TTTCGGGATCTCAATAGGGT+GGG | + | chr1.2:63377669-63377688 | None:intergenic | 45.0% | |
| ! | AGGCAAGAGATATGGTTTGG+GGG | + | chr1.2:63378881-63378900 | None:intergenic | 45.0% |
| ! | AGTGGGGAATGCTTTTCCAA+AGG | - | chr1.2:63379789-63379808 | MS.gene07464:intron | 45.0% |
| ! | CAGCATTCCCTCTTTTGCTT+TGG | - | chr1.2:63380804-63380823 | MS.gene07464:CDS | 45.0% |
| ! | TTTCTGGCCACAATCCATGA+TGG | - | chr1.2:63379749-63379768 | MS.gene07464:intron | 45.0% |
| !! | TTGAATTGGTGGCTTGCTCA+TGG | + | chr1.2:63379228-63379247 | None:intergenic | 45.0% |
| !! | GATAATATATAAATAAAAAT+AGG | + | chr1.2:63379905-63379924 | None:intergenic | 5.0% |
| !! | TATATATATATATATATAAG+CGG | - | chr1.2:63377609-63377628 | MS.gene07464:CDS | 5.0% |
| !!! | ATTATTTATTTATTTTTTGA+GGG | + | chr1.2:63379366-63379385 | None:intergenic | 5.0% |
| !!! | TTTTAATTGTAAAATTATTT+TGG | - | chr1.2:63379875-63379894 | MS.gene07464:intron | 5.0% |
| ATGAAGTACGGACACGGACA+CGG | - | chr1.2:63380199-63380218 | MS.gene07464:intron | 50.0% | |
| CCCCCAATAAGTGTTTCTCG+AGG | - | chr1.2:63379045-63379064 | MS.gene07464:intron | 50.0% | |
| GAGCTACAGCAAGCATTCTG+TGG | + | chr1.2:63378580-63378599 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | chr1.2:63380347-63380366 | None:intergenic | 50.0% | |
| TCATGTCAGTGTAGGACACC+AGG | - | chr1.2:63380310-63380329 | MS.gene07464:intron | 50.0% | |
| TTCGGGATCTCAATAGGGTG+GGG | + | chr1.2:63377668-63377687 | None:intergenic | 50.0% | |
| ! | AGAGATATGGTTTGGGGGTG+TGG | + | chr1.2:63378876-63378895 | None:intergenic | 50.0% |
| ! | GATTTCAGGCCCCCTACTTT+TGG | - | chr1.2:63379448-63379467 | MS.gene07464:intron | 50.0% |
| ! | GGGGGTGTGGTGTATGATAA+TGG | + | chr1.2:63378863-63378882 | None:intergenic | 50.0% |
| ATCATGATCAGACGCAGGGG+CGG | + | chr1.2:63378602-63378621 | None:intergenic | 55.0% | |
| TTGGGTCCCTTCCATGCTCA+AGG | - | chr1.2:63377309-63377328 | MS.gene07464:CDS | 55.0% | |
| !! | ATTGGTGGCTTGCTCATGGC+TGG | + | chr1.2:63379224-63379243 | None:intergenic | 55.0% |
| ACCAGGACACGCCTGATCCG+AGG | - | chr1.2:63380327-63380346 | MS.gene07464:intron | 65.0% | |
| GCACGGACACTCCTCGGATC+AGG | + | chr1.2:63380341-63380360 | None:intergenic | 65.0% | |
| TCCTCGGATCAGGCGTGTCC+TGG | + | chr1.2:63380331-63380350 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63377163 | 63380961 | 63377163 | ID=MS.gene07464 |
| chr1.2 | mRNA | 63377163 | 63380961 | 63377163 | ID=MS.gene07464.t1;Parent=MS.gene07464 |
| chr1.2 | exon | 63380794 | 63380961 | 63380794 | ID=MS.gene07464.t1.exon1;Parent=MS.gene07464.t1 |
| chr1.2 | CDS | 63380794 | 63380961 | 63380794 | ID=cds.MS.gene07464.t1;Parent=MS.gene07464.t1 |
| chr1.2 | exon | 63377163 | 63377708 | 63377163 | ID=MS.gene07464.t1.exon2;Parent=MS.gene07464.t1 |
| chr1.2 | CDS | 63377163 | 63377708 | 63377163 | ID=cds.MS.gene07464.t1;Parent=MS.gene07464.t1 |
| Gene Sequence |
| Protein sequence |
