AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057246


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057246.t1 MTR_3g092720 93.082 318 16 3 1 317 41 353 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057246.t1 AT5G24490 71.130 239 67 2 80 317 71 308 7.66e-120 347

Find 100 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGGTGACTTGGTCTTTA+TGG 0.117605 3.2:+78023810 None:intergenic
GCTGCTGCCGCCGCGGCGTT+TGG 0.274036 3.2:+78023714 None:intergenic
ATTGCTTCAAACACGGTTAA+AGG 0.283097 3.2:+78022627 None:intergenic
ATCTGCTTCACCGTTTCCTT+TGG 0.285013 3.2:+78022374 None:intergenic
AAGAAAGCTGAGAAAGATTA+AGG 0.301741 3.2:-78023096 MS.gene057246:CDS
AAACGGTGAAGCAGATAAAT+TGG 0.329912 3.2:-78022367 MS.gene057246:CDS
CGCCGCGGCGGCAGCAGCGG+CGG 0.337270 3.2:-78023709 MS.gene057246:CDS
ACTCGTGGTGGAGGAGAATT+TGG 0.356620 3.2:-78023343 MS.gene057246:CDS
AAAAGAAAAGAAGGAGGTTA+TGG 0.362880 3.2:-78022408 MS.gene057246:CDS
TTCATCCTCCTCATCCTTTG+TGG 0.374734 3.2:+78022998 None:intergenic
TCTGCTTCACCGTTTCCTTT+GGG 0.387106 3.2:+78022375 None:intergenic
TCCTCATCCTTTGTGGGTAA+TGG 0.390537 3.2:+78023005 None:intergenic
AAGAGGAGGAGGATGGAAAA+AGG 0.391250 3.2:+78023875 None:intergenic
TTTCTTCTTCCTCCTTCTGT+GGG 0.392843 3.2:+78022964 None:intergenic
TTAGCCGGTTCAACCACTAT+AGG 0.402037 3.2:+78022342 None:intergenic
TTCCATCCTCCTCCTCTTCG+CGG 0.403031 3.2:-78023870 MS.gene057246:CDS
GCATGGGGTGGTGCGGGCTG+AGG 0.403257 3.2:-78023171 MS.gene057246:CDS
TACCTATGCGAGTATAGATT+TGG 0.408357 3.2:-78023135 MS.gene057246:CDS
ACCTCGCATCTACGTGTTCT+AGG 0.409433 3.2:+78023313 None:intergenic
AAAGAGGCATGGGGTGGTGC+GGG 0.416801 3.2:-78023177 MS.gene057246:CDS
GCCACATGAAGGGATCTAAT+AGG 0.418680 3.2:-78023052 MS.gene057246:CDS
TCATCCTCCTCATCCTTTGT+GGG 0.419500 3.2:+78022999 None:intergenic
AAACGCCGCGGCGGCAGCAG+CGG 0.425141 3.2:-78023712 MS.gene057246:CDS
TCTCCGTTGTTTGTATGTCA+TGG 0.434579 3.2:-78023681 MS.gene057246:CDS
TTCCGTCAAATTAATCATCC+AGG 0.449850 3.2:-78023644 MS.gene057246:CDS
TGTAGAGAGGGTTCTTTAGC+CGG 0.466266 3.2:+78022327 None:intergenic
GTCTTTATGGAGGAAGGTAG+AGG 0.468202 3.2:+78023823 None:intergenic
ACCCTGGATGATTAATTTGA+CGG 0.468958 3.2:+78023642 None:intergenic
TCCTTTCATTCTTGTAGAGA+GGG 0.474483 3.2:+78022315 None:intergenic
CTTTGTTTACAAAGAGGCAT+GGG 0.478410 3.2:-78023187 MS.gene057246:CDS
ATTGTATACAAAAGAAAAGA+AGG 0.479149 3.2:-78022417 MS.gene057246:CDS
CTCCGTTGTTTGTATGTCAT+GGG 0.482798 3.2:-78023680 MS.gene057246:CDS
AAGGTTTGTGTGGAAGTTGA+AGG 0.492805 3.2:+78023894 None:intergenic
GGAGCCTATAGTGGTTGAAC+CGG 0.496037 3.2:-78022346 MS.gene057246:CDS
AAGGCACCGCGAAGAGGAGG+AGG 0.497107 3.2:+78023864 None:intergenic
CAAAGAGGCATGGGGTGGTG+CGG 0.497915 3.2:-78023178 MS.gene057246:CDS
AGCAATTGACCAGTTGGAAA+TGG 0.498256 3.2:-78022610 MS.gene057246:CDS
CTCATTATTCCCAAAGGAAA+CGG 0.502483 3.2:-78022384 MS.gene057246:CDS
CTTCATTCATAATATGTCAA+TGG 0.507528 3.2:-78023923 None:intergenic
TTCTCCTGTCAAGAATGTTG+TGG 0.508305 3.2:+78023789 None:intergenic
CCCTCCACAACATTCTTGAC+AGG 0.515980 3.2:-78023793 MS.gene057246:CDS
AGATAAATTGGAGCCTATAG+TGG 0.523119 3.2:-78022355 MS.gene057246:CDS
CATGAGCAACCATTTCCAAC+TGG 0.524804 3.2:+78022601 None:intergenic
TCCTGTCAAGAATGTTGTGG+AGG 0.525749 3.2:+78023792 None:intergenic
ACTTTGTTTACAAAGAGGCA+TGG 0.529041 3.2:-78023188 MS.gene057246:CDS
GTTTGAAGCAATTGACCAGT+TGG 0.532744 3.2:-78022616 MS.gene057246:CDS
AGGTTTGTGTGGAAGTTGAA+GGG 0.535418 3.2:+78023895 None:intergenic
GCCATTACCCACAAAGGATG+AGG 0.535853 3.2:-78023006 MS.gene057246:CDS
TTCCTTTCATTCTTGTAGAG+AGG 0.539789 3.2:+78022314 None:intergenic
GAATGTTGTGGAGGGTGACT+TGG 0.542454 3.2:+78023801 None:intergenic
AGAAAGGCACCGCGAAGAGG+AGG 0.543397 3.2:+78023861 None:intergenic
TGATCATGGTCGCCACATGA+AGG 0.549029 3.2:-78023063 MS.gene057246:CDS
AACCGCCGCTGCTGCCGCCG+CGG 0.549932 3.2:+78023707 None:intergenic
CACCGCGAAGAGGAGGAGGA+TGG 0.556744 3.2:+78023868 None:intergenic
GTTGTTTGTATGTCATGGGA+CGG 0.558277 3.2:-78023676 MS.gene057246:CDS
ACAACATTCTTGACAGGAGA+AGG 0.561368 3.2:-78023787 MS.gene057246:CDS
GCGTTTGGTTGTTGTTGTTG+TGG 0.561693 3.2:+78023729 None:intergenic
GACTTGGTCTTTATGGAGGA+AGG 0.566043 3.2:+78023817 None:intergenic
GATCATGGTCGCCACATGAA+GGG 0.566295 3.2:-78023062 MS.gene057246:CDS
ATTAATTTGACGGAAGAGAG+TGG 0.569781 3.2:+78023652 None:intergenic
TGAAATCTCCCCACAGAAGG+AGG 0.570050 3.2:-78022973 MS.gene057246:CDS
CAGCTTTCTTTGAATGACCG+AGG 0.571209 3.2:+78023109 None:intergenic
ACAGCACGTAGAGGAGAAAG+TGG 0.574125 3.2:-78023422 MS.gene057246:CDS
AGACTATCTACTCGTGGTGG+AGG 0.576666 3.2:-78023352 MS.gene057246:CDS
AGGTTACTTTGTTTACAAAG+AGG 0.577297 3.2:-78023193 MS.gene057246:CDS
TTTATGGAGGAAGGTAGAGG+AGG 0.579108 3.2:+78023826 None:intergenic
TACAGAAAGGCACCGCGAAG+AGG 0.580436 3.2:+78023858 None:intergenic
AACTGAAATCTCCCCACAGA+AGG 0.585420 3.2:-78022976 MS.gene057246:CDS
TCCGTCAAATTAATCATCCA+GGG 0.585766 3.2:-78023643 MS.gene057246:CDS
CTGGTCAATTGCTTCAAACA+CGG 0.587799 3.2:+78022620 None:intergenic
TTCTTCTTCCTCCTTCTGTG+GGG 0.588690 3.2:+78022965 None:intergenic
GGTGCGGGCTGAGGAACATG+CGG 0.592841 3.2:-78023162 MS.gene057246:CDS
CAGCACGTAGAGGAGAAAGT+GGG 0.593436 3.2:-78023421 MS.gene057246:CDS
GAGTATAGATTTGGTGTCCT+CGG 0.603285 3.2:-78023126 MS.gene057246:CDS
TATGGACTCATTATTCCCAA+AGG 0.604836 3.2:-78022390 MS.gene057246:CDS
GAGGAAGAGAGAGTACAGAA+AGG 0.608429 3.2:+78023845 None:intergenic
GGGTGACTTGGTCTTTATGG+AGG 0.609776 3.2:+78023813 None:intergenic
GGTGGAGGAGAATTTGGTCG+AGG 0.611696 3.2:-78023337 MS.gene057246:CDS
TAGGTTGAAATTTAGAGAGG+CGG 0.613252 3.2:-78023033 MS.gene057246:CDS
GCTTCAAACACGGTTAAAGG+AGG 0.615142 3.2:+78022630 None:intergenic
CACCAAATCTATACTCGCAT+AGG 0.617087 3.2:+78023133 None:intergenic
GTTTACAAAGAGGCATGGGG+TGG 0.620636 3.2:-78023183 MS.gene057246:CDS
TTTGGTTGTTGTTGTTGTGG+CGG 0.626673 3.2:+78023732 None:intergenic
ACCTATTAGATCCCTTCATG+TGG 0.628686 3.2:+78023051 None:intergenic
TAATAGGTTGAAATTTAGAG+AGG 0.630490 3.2:-78023036 MS.gene057246:CDS
ACATTCTTGACAGGAGAAGG+AGG 0.645382 3.2:-78023784 MS.gene057246:CDS
ACCTAGAACACGTAGATGCG+AGG 0.650273 3.2:-78023314 MS.gene057246:intron
AGCACGTAGAGGAGAAAGTG+GGG 0.652859 3.2:-78023420 MS.gene057246:CDS
GGTATTGCCATTACCCACAA+AGG 0.654530 3.2:-78023012 MS.gene057246:CDS
ATTACCCACAAAGGATGAGG+AGG 0.656628 3.2:-78023003 MS.gene057246:CDS
TTTGTTTACAAAGAGGCATG+GGG 0.659293 3.2:-78023186 MS.gene057246:CDS
CCTGTCAAGAATGTTGTGGA+GGG 0.660271 3.2:+78023793 None:intergenic
ACAACAACCAAACGCCGCGG+CGG 0.660743 3.2:-78023721 MS.gene057246:CDS
TGCGGTGAAACAGCACGTAG+AGG 0.663832 3.2:-78023431 MS.gene057246:CDS
GTATACAAAAGAAAAGAAGG+AGG 0.667757 3.2:-78022414 MS.gene057246:CDS
ACAACAACAACCAAACGCCG+CGG 0.673009 3.2:-78023724 MS.gene057246:CDS
GTCCCATGACATACAAACAA+CGG 0.689809 3.2:+78023678 None:intergenic
GATGTGAGACTATCTACTCG+TGG 0.713178 3.2:-78023358 MS.gene057246:CDS
TTGAGTTCAGCTGAATGATG+CGG 0.727884 3.2:-78023449 MS.gene057246:intron
GTGAGACTATCTACTCGTGG+TGG 0.731336 3.2:-78023355 MS.gene057246:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTAATGATGATAATAAAA+TGG + chr3.2:78022645-78022664 None:intergenic 15.0%
!! ATTAGAAAAACTTCAATTTC+TGG - chr3.2:78023402-78023421 MS.gene057246:CDS 20.0%
!! ATTGTATACAAAAGAAAAGA+AGG - chr3.2:78023813-78023832 MS.gene057246:CDS 20.0%
!! GATGATAATAAAATGGAAAT+GGG + chr3.2:78022638-78022657 None:intergenic 20.0%
!! TGATGATAATAAAATGGAAA+TGG + chr3.2:78022639-78022658 None:intergenic 20.0%
!!! TTCAATTTTATGCTATCTTA+GGG - chr3.2:78023751-78023770 MS.gene057246:CDS 20.0%
! ATAAAATGTAGTGAGAAACA+TGG + chr3.2:78023723-78023742 None:intergenic 25.0%
! ATATTCACAATGAGAAGAAA+CGG - chr3.2:78022723-78022742 MS.gene057246:intron 25.0%
!! GTTCAATTTTATGCTATCTT+AGG - chr3.2:78023750-78023769 MS.gene057246:CDS 25.0%
!! TAATAGGTTGAAATTTAGAG+AGG - chr3.2:78023194-78023213 MS.gene057246:CDS 25.0%
!! TCAATTTTATGCTATCTTAG+GGG - chr3.2:78023752-78023771 MS.gene057246:CDS 25.0%
!! TGATTTCTATGATTTGCATT+AGG - chr3.2:78023017-78023036 MS.gene057246:CDS 25.0%
!!! AAAAACTTCAATTTCTGGTT+TGG - chr3.2:78023407-78023426 MS.gene057246:CDS 25.0%
!!! GTTATATTTCTAGAATGACA+CGG + chr3.2:78023362-78023381 None:intergenic 25.0%
AAAAGAAAAGAAGGAGGTTA+TGG - chr3.2:78023822-78023841 MS.gene057246:CDS 30.0%
AAGAAAGCTGAGAAAGATTA+AGG - chr3.2:78023134-78023153 MS.gene057246:CDS 30.0%
AAGGAAAAAGAAACTGATCA+TGG - chr3.2:78023153-78023172 MS.gene057246:CDS 30.0%
AGAAGAAAAACTTATTGAGG+AGG - chr3.2:78023281-78023300 MS.gene057246:intron 30.0%
ATGATTAATGTCAACAACGA+AGG + chr3.2:78023313-78023332 None:intergenic 30.0%
GGAAGAAGAAAAACTTATTG+AGG - chr3.2:78023278-78023297 MS.gene057246:intron 30.0%
GTAGCTAGAAATATCATATC+AGG - chr3.2:78023336-78023355 MS.gene057246:CDS 30.0%
GTATACAAAAGAAAAGAAGG+AGG - chr3.2:78023816-78023835 MS.gene057246:CDS 30.0%
TATAACTAATCTACTAGCTG+TGG - chr3.2:78022758-78022777 MS.gene057246:intron 30.0%
! AGGTTACTTTGTTTACAAAG+AGG - chr3.2:78023037-78023056 MS.gene057246:CDS 30.0%
!! TTTGCTTTTGTTGTAAACCT+AGG - chr3.2:78022966-78022985 MS.gene057246:CDS 30.0%
!!! ACTACTGTTTTAGCTATCTT+TGG - chr3.2:78023692-78023711 MS.gene057246:CDS 30.0%
AAACGGTGAAGCAGATAAAT+TGG - chr3.2:78023863-78023882 MS.gene057246:CDS 35.0%
AGATAAATTGGAGCCTATAG+TGG - chr3.2:78023875-78023894 MS.gene057246:CDS 35.0%
ATTGCTTCAAACACGGTTAA+AGG + chr3.2:78023606-78023625 None:intergenic 35.0%
CTCATTATTCCCAAAGGAAA+CGG - chr3.2:78023846-78023865 MS.gene057246:CDS 35.0%
GAAAAACTTATTGAGGAGGT+TGG - chr3.2:78023285-78023304 MS.gene057246:intron 35.0%
TACCTATGCGAGTATAGATT+TGG - chr3.2:78023095-78023114 MS.gene057246:CDS 35.0%
TATGGACTCATTATTCCCAA+AGG - chr3.2:78023840-78023859 MS.gene057246:CDS 35.0%
TCCGTCAAATTAATCATCCA+GGG - chr3.2:78022587-78022606 MS.gene057246:CDS 35.0%
TTCCGTCAAATTAATCATCC+AGG - chr3.2:78022586-78022605 MS.gene057246:CDS 35.0%
! AAGTGTACTTCCTTTGTTTC+AGG - chr3.2:78023780-78023799 MS.gene057246:CDS 35.0%
! ACCCTGGATGATTAATTTGA+CGG + chr3.2:78022591-78022610 None:intergenic 35.0%
! ACTTTGTTTACAAAGAGGCA+TGG - chr3.2:78023042-78023061 MS.gene057246:CDS 35.0%
! AGTGTACTTCCTTTGTTTCA+GGG - chr3.2:78023781-78023800 MS.gene057246:CDS 35.0%
! ATTAATTTGACGGAAGAGAG+TGG + chr3.2:78022581-78022600 None:intergenic 35.0%
! CTTTGTTTACAAAGAGGCAT+GGG - chr3.2:78023043-78023062 MS.gene057246:CDS 35.0%
! GCTTTTCGAAATGAAGAATC+TGG - chr3.2:78023660-78023679 MS.gene057246:CDS 35.0%
! TAGGTTGAAATTTAGAGAGG+CGG - chr3.2:78023197-78023216 MS.gene057246:intron 35.0%
! TTTGTTTACAAAGAGGCATG+GGG - chr3.2:78023044-78023063 MS.gene057246:CDS 35.0%
!! ATACCTGCATATTTTTACCC+TGG + chr3.2:78022607-78022626 None:intergenic 35.0%
!! CTTTTGTTGTAAACCTAGGA+TGG - chr3.2:78022970-78022989 MS.gene057246:CDS 35.0%
AAGGTTTGTGTGGAAGTTGA+AGG + chr3.2:78022339-78022358 None:intergenic 40.0%
ACAACATTCTTGACAGGAGA+AGG - chr3.2:78022443-78022462 MS.gene057246:intron 40.0%
ACCTATTAGATCCCTTCATG+TGG + chr3.2:78023182-78023201 None:intergenic 40.0%
ACTGGAGTTAGTGCAATGTA+AGG + chr3.2:78023535-78023554 None:intergenic 40.0%
AGCAATTGACCAGTTGGAAA+TGG - chr3.2:78023620-78023639 MS.gene057246:intron 40.0%
AGGATGGAAAAAGGTTTGTG+TGG + chr3.2:78022349-78022368 None:intergenic 40.0%
AGGTTTGTGTGGAAGTTGAA+GGG + chr3.2:78022338-78022357 None:intergenic 40.0%
ATTAACCTCCCCTGAAACAA+AGG + chr3.2:78023793-78023812 None:intergenic 40.0%
CACCAAATCTATACTCGCAT+AGG + chr3.2:78023100-78023119 None:intergenic 40.0%
CATCCAGGGTAAAAATATGC+AGG - chr3.2:78022601-78022620 MS.gene057246:CDS 40.0%
CTCCGTTGTTTGTATGTCAT+GGG - chr3.2:78022550-78022569 MS.gene057246:intron 40.0%
CTGGTCAATTGCTTCAAACA+CGG + chr3.2:78023613-78023632 None:intergenic 40.0%
GTCCCATGACATACAAACAA+CGG + chr3.2:78022555-78022574 None:intergenic 40.0%
GTTGTTTGTATGTCATGGGA+CGG - chr3.2:78022554-78022573 MS.gene057246:intron 40.0%
TCTCCGTTGTTTGTATGTCA+TGG - chr3.2:78022549-78022568 MS.gene057246:intron 40.0%
TTCTCCTGTCAAGAATGTTG+TGG + chr3.2:78022444-78022463 None:intergenic 40.0%
TTGAGTTCAGCTGAATGATG+CGG - chr3.2:78022781-78022800 MS.gene057246:intron 40.0%
TTTCTTCTTCCTCCTTCTGT+GGG + chr3.2:78023269-78023288 None:intergenic 40.0%
! GTAAACCTAGGATGGATTCA+GGG - chr3.2:78022978-78022997 MS.gene057246:CDS 40.0%
! GTGTACTTCCTTTGTTTCAG+GGG - chr3.2:78023782-78023801 MS.gene057246:CDS 40.0%
! GTTTGAAGCAATTGACCAGT+TGG - chr3.2:78023614-78023633 MS.gene057246:intron 40.0%
! TGTAAACCTAGGATGGATTC+AGG - chr3.2:78022977-78022996 MS.gene057246:CDS 40.0%
! TTTGGTTGTTGTTGTTGTGG+CGG + chr3.2:78022501-78022520 None:intergenic 40.0%
! TTTTCTTCTTCCTCCTTCTG+TGG + chr3.2:78023270-78023289 None:intergenic 40.0%
!! AGGCTGTTTTACAGGTTGTT+CGG - chr3.2:78023559-78023578 MS.gene057246:intron 40.0%
!! GAGTATAGATTTGGTGTCCT+CGG - chr3.2:78023104-78023123 MS.gene057246:CDS 40.0%
AACTGAAATCTCCCCACAGA+AGG - chr3.2:78023254-78023273 MS.gene057246:intron 45.0%
AAGAGGAGGAGGATGGAAAA+AGG + chr3.2:78022358-78022377 None:intergenic 45.0%
ACATTCTTGACAGGAGAAGG+AGG - chr3.2:78022446-78022465 MS.gene057246:intron 45.0%
ATCTGCTTCACCGTTTCCTT+TGG + chr3.2:78023859-78023878 None:intergenic 45.0%
ATTACCCACAAAGGATGAGG+AGG - chr3.2:78023227-78023246 MS.gene057246:intron 45.0%
CAGCTTTCTTTGAATGACCG+AGG + chr3.2:78023124-78023143 None:intergenic 45.0%
CATGAGCAACCATTTCCAAC+TGG + chr3.2:78023632-78023651 None:intergenic 45.0%
CCTGTCAAGAATGTTGTGGA+GGG + chr3.2:78022440-78022459 None:intergenic 45.0%
GATGTGAGACTATCTACTCG+TGG - chr3.2:78022872-78022891 MS.gene057246:intron 45.0%
GCCACATGAAGGGATCTAAT+AGG - chr3.2:78023178-78023197 MS.gene057246:CDS 45.0%
GCTTCAAACACGGTTAAAGG+AGG + chr3.2:78023603-78023622 None:intergenic 45.0%
GGTATTGCCATTACCCACAA+AGG - chr3.2:78023218-78023237 MS.gene057246:intron 45.0%
GTCTTTATGGAGGAAGGTAG+AGG + chr3.2:78022410-78022429 None:intergenic 45.0%
TCATCCTCCTCATCCTTTGT+GGG + chr3.2:78023234-78023253 None:intergenic 45.0%
TCCTCATCCTTTGTGGGTAA+TGG + chr3.2:78023228-78023247 None:intergenic 45.0%
TCCTGTCAAGAATGTTGTGG+AGG + chr3.2:78022441-78022460 None:intergenic 45.0%
TCTGCTTCACCGTTTCCTTT+GGG + chr3.2:78023858-78023877 None:intergenic 45.0%
TGTAGAGAGGGTTCTTTAGC+CGG + chr3.2:78023906-78023925 None:intergenic 45.0%
TTCATCCTCCTCATCCTTTG+TGG + chr3.2:78023235-78023254 None:intergenic 45.0%
TTCTTCTTCCTCCTTCTGTG+GGG + chr3.2:78023268-78023287 None:intergenic 45.0%
TTTATGGAGGAAGGTAGAGG+AGG + chr3.2:78022407-78022426 None:intergenic 45.0%
! GACTTGGTCTTTATGGAGGA+AGG + chr3.2:78022416-78022435 None:intergenic 45.0%
! GAGGAAGAGAGAGTACAGAA+AGG + chr3.2:78022388-78022407 None:intergenic 45.0%
! GCGTTTGGTTGTTGTTGTTG+TGG + chr3.2:78022504-78022523 None:intergenic 45.0%
! TACTTCCTTTGTTTCAGGGG+AGG - chr3.2:78023785-78023804 MS.gene057246:CDS 45.0%
! TTAGCCGGTTCAACCACTAT+AGG + chr3.2:78023891-78023910 None:intergenic 45.0%
ACAACAACAACCAAACGCCG+CGG - chr3.2:78022506-78022525 MS.gene057246:intron 50.0%
ACAGCACGTAGAGGAGAAAG+TGG - chr3.2:78022808-78022827 MS.gene057246:intron 50.0%
ACCTAGAACACGTAGATGCG+AGG - chr3.2:78022916-78022935 MS.gene057246:intron 50.0%
ACCTCGCATCTACGTGTTCT+AGG + chr3.2:78022920-78022939 None:intergenic 50.0%
AGACTATCTACTCGTGGTGG+AGG - chr3.2:78022878-78022897 MS.gene057246:intron 50.0%
AGCACGTAGAGGAGAAAGTG+GGG - chr3.2:78022810-78022829 MS.gene057246:intron 50.0%
CAAGACCCTGAATCCATCCT+AGG + chr3.2:78022986-78023005 None:intergenic 50.0%
CAGCACGTAGAGGAGAAAGT+GGG - chr3.2:78022809-78022828 MS.gene057246:intron 50.0%
CCCTCCACAACATTCTTGAC+AGG - chr3.2:78022437-78022456 MS.gene057246:intron 50.0%
CTGTAAAACAGCCTCGCAAC+TGG + chr3.2:78023553-78023572 None:intergenic 50.0%
GAATGTTGTGGAGGGTGACT+TGG + chr3.2:78022432-78022451 None:intergenic 50.0%
GATCATGGTCGCCACATGAA+GGG - chr3.2:78023168-78023187 MS.gene057246:CDS 50.0%
GCCATTACCCACAAAGGATG+AGG - chr3.2:78023224-78023243 MS.gene057246:intron 50.0%
GGAGCCTATAGTGGTTGAAC+CGG - chr3.2:78023884-78023903 MS.gene057246:CDS 50.0%
GTGAGACTATCTACTCGTGG+TGG - chr3.2:78022875-78022894 MS.gene057246:intron 50.0%
TGAAATCTCCCCACAGAAGG+AGG - chr3.2:78023257-78023276 MS.gene057246:intron 50.0%
TGATCATGGTCGCCACATGA+AGG - chr3.2:78023167-78023186 MS.gene057246:CDS 50.0%
TTGCACTAACTCCAGTTGCG+AGG - chr3.2:78023539-78023558 MS.gene057246:intron 50.0%
! ACTCGTGGTGGAGGAGAATT+TGG - chr3.2:78022887-78022906 MS.gene057246:intron 50.0%
! GTTTACAAAGAGGCATGGGG+TGG - chr3.2:78023047-78023066 MS.gene057246:CDS 50.0%
!! CAGTTGCGAGGCTGTTTTAC+AGG - chr3.2:78023551-78023570 MS.gene057246:intron 50.0%
!! GGAGGGTGACTTGGTCTTTA+TGG + chr3.2:78022423-78022442 None:intergenic 50.0%
!! GGGTGACTTGGTCTTTATGG+AGG + chr3.2:78022420-78022439 None:intergenic 50.0%
GGTGGAGGAGAATTTGGTCG+AGG - chr3.2:78022893-78022912 MS.gene057246:intron 55.0%
TGCGGTGAAACAGCACGTAG+AGG - chr3.2:78022799-78022818 MS.gene057246:intron 55.0%
TTCCATCCTCCTCCTCTTCG+CGG - chr3.2:78022360-78022379 MS.gene057246:CDS 55.0%
!! TACAGAAAGGCACCGCGAAG+AGG + chr3.2:78022375-78022394 None:intergenic 55.0%
ACAACAACCAAACGCCGCGG+CGG - chr3.2:78022509-78022528 MS.gene057246:intron 60.0%
! AAAGAGGCATGGGGTGGTGC+GGG - chr3.2:78023053-78023072 MS.gene057246:CDS 60.0%
! CAAAGAGGCATGGGGTGGTG+CGG - chr3.2:78023052-78023071 MS.gene057246:CDS 60.0%
!! AGAAAGGCACCGCGAAGAGG+AGG + chr3.2:78022372-78022391 None:intergenic 60.0%
CACCGCGAAGAGGAGGAGGA+TGG + chr3.2:78022365-78022384 None:intergenic 65.0%
! GGTGCGGGCTGAGGAACATG+CGG - chr3.2:78023068-78023087 MS.gene057246:CDS 65.0%
!! AAGGCACCGCGAAGAGGAGG+AGG + chr3.2:78022369-78022388 None:intergenic 65.0%
AAACGCCGCGGCGGCAGCAG+CGG - chr3.2:78022518-78022537 MS.gene057246:intron 75.0%
! GCATGGGGTGGTGCGGGCTG+AGG - chr3.2:78023059-78023078 MS.gene057246:CDS 75.0%
! AACCGCCGCTGCTGCCGCCG+CGG + chr3.2:78022526-78022545 None:intergenic 80.0%
! GCTGCTGCCGCCGCGGCGTT+TGG + chr3.2:78022519-78022538 None:intergenic 80.0%
! CGCCGCGGCGGCAGCAGCGG+CGG - chr3.2:78022521-78022540 MS.gene057246:intron 90.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 78022320 78023932 78022320 ID=MS.gene057246
chr3.2 mRNA 78022320 78023932 78022320 ID=MS.gene057246.t1;Parent=MS.gene057246
chr3.2 exon 78023630 78023932 78023630 ID=MS.gene057246.t1.exon1;Parent=MS.gene057246.t1
chr3.2 CDS 78023630 78023932 78023630 ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2 exon 78023315 78023461 78023315 ID=MS.gene057246.t1.exon2;Parent=MS.gene057246.t1
chr3.2 CDS 78023315 78023461 78023315 ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2 exon 78022950 78023213 78022950 ID=MS.gene057246.t1.exon3;Parent=MS.gene057246.t1
chr3.2 CDS 78022950 78023213 78022950 ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2 exon 78022571 78022679 78022571 ID=MS.gene057246.t1.exon4;Parent=MS.gene057246.t1
chr3.2 CDS 78022571 78022679 78022571 ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2 exon 78022320 78022450 78022320 ID=MS.gene057246.t1.exon5;Parent=MS.gene057246.t1
chr3.2 CDS 78022320 78022450 78022320 ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
Gene Sequence

>MS.gene057246

ATGTCAATGGCGACTCCCTTCAACTTCCACACAAACCTTTTTCCATCCTCCTCCTCTTCGCGGTGCCTTTCTGTACTCTCTCTTCCTCCTCTACCTTCCTCCATAAAGACCAAGTCACCCTCCACAACATTCTTGACAGGAGAAGGAGGCACATCACAGTTGCTGAAATTGAAGTATGCCGCCACAACAACAACAACCAAACGCCGCGGCGGCAGCAGCGGCGGTTCAGTCTCCGTTGTTTGTATGTCATGGGACGGTCCACTCTCTTCCGTCAAATTAATCATCCAGGGTAAAAATATGCAGGTATAATCTATTCCCATTTCCATTTTATTATCATCATTACTATTCTAGATAGAAATTATTGATAAAAGTAAAGTAGAGAAAAATAAATATTATTGAAATTATATTCACAATGAGAAGAAACGGTTAGTGTAATTCTATAACTAATCTACTAGCTGTGGTTGAGTTCAGCTGAATGATGCGGTGAAACAGCACGTAGAGGAGAAAGTGGGGAGAGCAGTTCAGAAGCACAGCTACTTAGTAAGAGAAGTTGATGTGAGACTATCTACTCGTGGTGGAGGAGAATTTGGTCGAGGACCTAGAACACGTAGATGCGAGGTAGTAGATCTCTTTTGCATTTTCTAATTTTGCTTTTGTTGTAAACCTAGGATGGATTCAGGGTCTTGAATTAATTAGTTGATTTCTATGATTTGCATTAGGTTACTTTGTTTACAAAGAGGCATGGGGTGGTGCGGGCTGAGGAACATGCGGAAACTACCTATGCGAGTATAGATTTGGTGTCCTCGGTCATTCAAAGAAAGCTGAGAAAGATTAAGGAAAAAGAAACTGATCATGGTCGCCACATGAAGGGATCTAATAGGTTGAAATTTAGAGAGGCGGTATTGCCATTACCCACAAAGGATGAGGAGGATGAAACTGAAATCTCCCCACAGAAGGAGGAAGAAGAAAAACTTATTGAGGAGGTTGGTACCTTCGTTGTTGACATTAATCATTATGTAGCTAGAAATATCATATCAGGCCGTGTCATTCTAGAAATATAACTGAAAATGTTCTGCAAATTGATTAGAAAAACTTCAATTTCTGGTTTGGAAGTAGATCTGCAGTTTGCTCTTACACTATTTATGTTGATTGATGATATATCATTACTTATCAAGAGATGCTGCTGTTCTTTTGTTATTTATTGTTTATTTTCCTTACATTGCACTAACTCCAGTTGCGAGGCTGTTTTACAGGTTGTTCGGACAAAATACTTTGACATGCCTCCTTTAACCGTGTTTGAAGCAATTGACCAGTTGGAAATGGTTGCTCATGACTTCTATGCTTTTCGAAATGAAGAATCTGGTCAGTAAATACTACTGTTTTAGCTATCTTTGGTTTGACCATGTTTCTCACTACATTTTATTGTCTCTGTTCAATTTTATGCTATCTTAGGGGTAACAAAGTGTACTTCCTTTGTTTCAGGGGAGGTTAATATTGTATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATTCCCAAAGGAAACGGTGAAGCAGATAAATTGGAGCCTATAGTGGTTGAACCGGCTAAAGAACCCTCTCTACAAGAATGA

Protein sequence

>MS.gene057246.t1

MSMATPFNFHTNLFPSSSSSRCLSVLSLPPLPSSIKTKSPSTTFLTGEGGTSQLLKLKYAATTTTTKRRGGSSGGSVSVVCMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHMKGSNRLKFREAVLPLPTKDEEDETEISPQKEEEEKLIEEVVRTKYFDMPPLTVFEAIDQLEMVAHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPSLQE