AlfalfaGEDB | MS.gene057246

M. sativa cultivar XinJiangDaYe / MS.gene057246

KEGG: -
GO: GO:0008150 GO:0008152 GO:0044238
PFAM: PF02482.22 PF16321.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057246.t1	XP_003602381.2	92.8	318	17	3	1	317	41	353	5.30E-145	523.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057246.t1	P19954	65.8	243	78	3	78	317	62	302	3.4e-84	313.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057246.t1	G7J8Z9	92.8	318	17	3	1	317	41	353	3.8e-145	523.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene057246	0.801216	1.00E-48	-1.69E-46
MS.gene049222	MS.gene057246	0.813037	3.13E-51	-1.69E-46
MS.gene049285	MS.gene057246	0.805964	1.04E-49	-1.69E-46
MS.gene049320	MS.gene057246	0.840713	7.37E-58	-1.69E-46
MS.gene049402	MS.gene057246	-0.803696	3.08E-49	-1.69E-46
MS.gene050163	MS.gene057246	0.865855	4.36E-65	-1.69E-46
MS.gene050165	MS.gene057246	0.873029	2.02E-67	-1.69E-46
MS.gene050333	MS.gene057246	0.844069	9.50E-59	-1.69E-46
MS.gene050444	MS.gene057246	0.82897	6.69E-55	-1.69E-46
MS.gene050504	MS.gene057246	0.811549	6.62E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057246.t1	MTR_3g092720	93.082	318	16	3	1	317	41	353	0.0	545

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057246.t1	AT5G24490	71.130	239	67	2	80	317	71	308	7.66e-120	347

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Find 100 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGAAGGAGGTTA+TGG	0.362880	3.2:-78022408	MS.gene057246:CDS
AAACGCCGCGGCGGCAGCAG+CGG	0.425141	3.2:-78023712	MS.gene057246:CDS
AAACGGTGAAGCAGATAAAT+TGG	0.329912	3.2:-78022367	MS.gene057246:CDS
AAAGAGGCATGGGGTGGTGC+GGG	0.416801	3.2:-78023177	MS.gene057246:CDS
AACCGCCGCTGCTGCCGCCG+CGG	0.549932	3.2:+78023707	None:intergenic
AACTGAAATCTCCCCACAGA+AGG	0.585420	3.2:-78022976	MS.gene057246:CDS
AAGAAAGCTGAGAAAGATTA+AGG	0.301741	3.2:-78023096	MS.gene057246:CDS
AAGAGGAGGAGGATGGAAAA+AGG	0.391250	3.2:+78023875	None:intergenic
AAGGCACCGCGAAGAGGAGG+AGG	0.497107	3.2:+78023864	None:intergenic
AAGGTTTGTGTGGAAGTTGA+AGG	0.492805	3.2:+78023894	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAAGAAGGAGGTTA+TGG	-	chr3.2:78023822-78023841	MS.gene057246:CDS	30.0%
AAGAAAGCTGAGAAAGATTA+AGG	-	chr3.2:78023134-78023153	MS.gene057246:CDS	30.0%
AAGGAAAAAGAAACTGATCA+TGG	-	chr3.2:78023153-78023172	MS.gene057246:CDS	30.0%
AGAAGAAAAACTTATTGAGG+AGG	-	chr3.2:78023281-78023300	MS.gene057246:intron	30.0%
ATGATTAATGTCAACAACGA+AGG	+	chr3.2:78023313-78023332	None:intergenic	30.0%
GGAAGAAGAAAAACTTATTG+AGG	-	chr3.2:78023278-78023297	MS.gene057246:intron	30.0%
GTAGCTAGAAATATCATATC+AGG	-	chr3.2:78023336-78023355	MS.gene057246:CDS	30.0%
GTATACAAAAGAAAAGAAGG+AGG	-	chr3.2:78023816-78023835	MS.gene057246:CDS	30.0%
TATAACTAATCTACTAGCTG+TGG	-	chr3.2:78022758-78022777	MS.gene057246:intron	30.0%
AAACGGTGAAGCAGATAAAT+TGG	-	chr3.2:78023863-78023882	MS.gene057246:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	78022320	78023932	78022320	ID=MS.gene057246
chr3.2	mRNA	78022320	78023932	78022320	ID=MS.gene057246.t1;Parent=MS.gene057246
chr3.2	exon	78023630	78023932	78023630	ID=MS.gene057246.t1.exon1;Parent=MS.gene057246.t1
chr3.2	CDS	78023630	78023932	78023630	ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2	exon	78023315	78023461	78023315	ID=MS.gene057246.t1.exon2;Parent=MS.gene057246.t1
chr3.2	CDS	78023315	78023461	78023315	ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2	exon	78022950	78023213	78022950	ID=MS.gene057246.t1.exon3;Parent=MS.gene057246.t1
chr3.2	CDS	78022950	78023213	78022950	ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2	exon	78022571	78022679	78022571	ID=MS.gene057246.t1.exon4;Parent=MS.gene057246.t1
chr3.2	CDS	78022571	78022679	78022571	ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1
chr3.2	exon	78022320	78022450	78022320	ID=MS.gene057246.t1.exon5;Parent=MS.gene057246.t1
chr3.2	CDS	78022320	78022450	78022320	ID=cds.MS.gene057246.t1;Parent=MS.gene057246.t1

Gene Sequence

>MS.gene057246

ATGTCAATGGCGACTCCCTTCAACTTCCACACAAACCTTTTTCCATCCTCCTCCTCTTCGCGGTGCCTTTCTGTACTCTCTCTTCCTCCTCTACCTTCCTCCATAAAGACCAAGTCACCCTCCACAACATTCTTGACAGGAGAAGGAGGCACATCACAGTTGCTGAAATTGAAGTATGCCGCCACAACAACAACAACCAAACGCCGCGGCGGCAGCAGCGGCGGTTCAGTCTCCGTTGTTTGTATGTCATGGGACGGTCCACTCTCTTCCGTCAAATTAATCATCCAGGGTAAAAATATGCAGGTATAATCTATTCCCATTTCCATTTTATTATCATCATTACTATTCTAGATAGAAATTATTGATAAAAGTAAAGTAGAGAAAAATAAATATTATTGAAATTATATTCACAATGAGAAGAAACGGTTAGTGTAATTCTATAACTAATCTACTAGCTGTGGTTGAGTTCAGCTGAATGATGCGGTGAAACAGCACGTAGAGGAGAAAGTGGGGAGAGCAGTTCAGAAGCACAGCTACTTAGTAAGAGAAGTTGATGTGAGACTATCTACTCGTGGTGGAGGAGAATTTGGTCGAGGACCTAGAACACGTAGATGCGAGGTAGTAGATCTCTTTTGCATTTTCTAATTTTGCTTTTGTTGTAAACCTAGGATGGATTCAGGGTCTTGAATTAATTAGTTGATTTCTATGATTTGCATTAGGTTACTTTGTTTACAAAGAGGCATGGGGTGGTGCGGGCTGAGGAACATGCGGAAACTACCTATGCGAGTATAGATTTGGTGTCCTCGGTCATTCAAAGAAAGCTGAGAAAGATTAAGGAAAAAGAAACTGATCATGGTCGCCACATGAAGGGATCTAATAGGTTGAAATTTAGAGAGGCGGTATTGCCATTACCCACAAAGGATGAGGAGGATGAAACTGAAATCTCCCCACAGAAGGAGGAAGAAGAAAAACTTATTGAGGAGGTTGGTACCTTCGTTGTTGACATTAATCATTATGTAGCTAGAAATATCATATCAGGCCGTGTCATTCTAGAAATATAACTGAAAATGTTCTGCAAATTGATTAGAAAAACTTCAATTTCTGGTTTGGAAGTAGATCTGCAGTTTGCTCTTACACTATTTATGTTGATTGATGATATATCATTACTTATCAAGAGATGCTGCTGTTCTTTTGTTATTTATTGTTTATTTTCCTTACATTGCACTAACTCCAGTTGCGAGGCTGTTTTACAGGTTGTTCGGACAAAATACTTTGACATGCCTCCTTTAACCGTGTTTGAAGCAATTGACCAGTTGGAAATGGTTGCTCATGACTTCTATGCTTTTCGAAATGAAGAATCTGGTCAGTAAATACTACTGTTTTAGCTATCTTTGGTTTGACCATGTTTCTCACTACATTTTATTGTCTCTGTTCAATTTTATGCTATCTTAGGGGTAACAAAGTGTACTTCCTTTGTTTCAGGGGAGGTTAATATTGTATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATTCCCAAAGGAAACGGTGAAGCAGATAAATTGGAGCCTATAGTGGTTGAACCGGCTAAAGAACCCTCTCTACAAGAATGA

Protein sequence

>MS.gene057246.t1

MSMATPFNFHTNLFPSSSSSRCLSVLSLPPLPSSIKTKSPSTTFLTGEGGTSQLLKLKYAATTTTTKRRGGSSGGSVSVVCMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHMKGSNRLKFREAVLPLPTKDEEDETEISPQKEEEEKLIEEVVRTKYFDMPPLTVFEAIDQLEMVAHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPSLQE