AlfalfaGEDB | MS.gene07508

M. sativa cultivar XinJiangDaYe / MS.gene07508

KEGG: K01761
GO: GO:0000096 GO:0003674 GO:0003824 GO:0005488 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009069 GO:0009092 GO:0009987 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901605
PFAM: PF01053.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	XP_013468871.1	99.4	180	1	0	1	180	271	450	1.60E-98	368.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	Q9SGU9	76.0	171	41	0	1	171	271	441	5.0e-72	271.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	A0A072VNE2	99.4	180	1	0	1	180	271	450	1.2e-98	368.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053272	MS.gene07508	-0.844988	5.37E-59	-1.69E-46
MS.gene053931	MS.gene07508	0.805887	1.07E-49	-1.69E-46
MS.gene057208	MS.gene07508	0.801212	1.00E-48	-1.69E-46
MS.gene057392	MS.gene07508	0.800262	1.57E-48	-1.69E-46
MS.gene057694	MS.gene07508	0.810458	1.14E-50	-1.69E-46
MS.gene060244	MS.gene07508	0.815696	8.10E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	MTR_1g077890	99.444	180	1	0	1	180	271	450	7.22e-133	379
MS.gene07508.t1	MTR_3g080850	83.333	168	28	0	6	173	274	441	5.37e-93	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	AT1G64660	76.023	171	41	0	1	171	271	441	1.99e-85	258

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Find 46 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGATTCAATTCTTATT+AGG	0.168129	1.3:-55604178	None:intergenic
AACAAAGACTATGGTTATGG+TGG	0.583091	1.3:+55603872	MS.gene07508:CDS
AAGTGATTCAATTCTTATTA+GGG	0.263216	1.3:-55604177	None:intergenic
AATAGGGTATATTGGGACTT+TGG	0.430260	1.3:+55604099	MS.gene07508:CDS
AGGATGTCAATAGGGTATAT+TGG	0.322482	1.3:+55604091	MS.gene07508:CDS
ATAGCATTATGGCCCCTTGG+TGG	0.543434	1.3:-55603661	None:intergenic
ATGAGCTATTTGCAAAACTA+TGG	0.283875	1.3:+55603941	MS.gene07508:CDS
ATTGACATCCTCACAAGACC+TGG	0.585919	1.3:-55604079	None:intergenic
CAAGGGGCCATAATGCTATT+AGG	0.360521	1.3:+55603665	MS.gene07508:CDS
CACAACAAAGACTATGGTTA+TGG	0.412875	1.3:+55603869	MS.gene07508:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAGCTATTTGCAAAACTA+TGG	+	chr1.3:55603941-55603960	MS.gene07508:CDS	30.0%
GATTTCAACAATTCATGATG+TGG	-	chr1.3:55603845-55603864	None:intergenic	30.0%
GTATCTAGACTTCAAGAATA+TGG	+	chr1.3:55604151-55604170	MS.gene07508:CDS	30.0%
TCAATTCACAACAAAGACTA+TGG	+	chr1.3:55603863-55603882	MS.gene07508:CDS	30.0%
TTGCAAAACTATGGACAATT+TGG	+	chr1.3:55603950-55603969	MS.gene07508:CDS	30.0%
AACAAAGACTATGGTTATGG+TGG	+	chr1.3:55603872-55603891	MS.gene07508:CDS	35.0%
AATAGGGTATATTGGGACTT+TGG	+	chr1.3:55604099-55604118	MS.gene07508:CDS	35.0%
AGGATGTCAATAGGGTATAT+TGG	+	chr1.3:55604091-55604110	MS.gene07508:CDS	35.0%
CACAACAAAGACTATGGTTA+TGG	+	chr1.3:55603869-55603888	MS.gene07508:CDS	35.0%
GAAATGGAATCAGCTTGAAA+AGG	+	chr1.3:55604126-55604145	MS.gene07508:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	55603650	55604192	55603650	ID=MS.gene07508
chr1.3	mRNA	55603650	55604192	55603650	ID=MS.gene07508.t1;Parent=MS.gene07508
chr1.3	exon	55603650	55604192	55603650	ID=MS.gene07508.t1.exon1;Parent=MS.gene07508.t1
chr1.3	CDS	55603650	55604192	55603650	ID=cds.MS.gene07508.t1;Parent=MS.gene07508.t1

Gene Sequence

>MS.gene07508

ATGATGGATCTCCACCAAGGGGCCATAATGCTATTAGGACCAACAATGAACCCCAAAATAGCATTTGAACTATCAGAAAGAATCCCTCACTTAGGCCTAAGGATGAAAGAACATAGCAACCGTGCGTTAGTGTTTGCAACAAGACTAAAAAAATTAGGATTCAAGGTAATCTACCCTGGCCTAGAAGACCATCCACATCATGAATTGTTGAAATCAATTCACAACAAAGACTATGGTTATGGTGGACTTCTTTGCATTGACATGGAAACTGAAGAAAGAGCTAACAAATTGATGAGCTATTTGCAAAACTATGGACAATTTGGTTTCATGGCTGTTAGTTTGGGTTACTATGAAACACTTATGTCTTGTTCTGGAAGTAGCACTAGTAGTGAGTTGAATTCTGAGGAAAAGGTTCTTGCTGGAATTTCACCAGGTCTTGTGAGGATGTCAATAGGGTATATTGGGACTTTGGAGCAGAAATGGAATCAGCTTGAAAAGGCAGTATCTAGACTTCAAGAATATGGTTTCCCTAATAAGAATTGA

Protein sequence

>MS.gene07508.t1

MMDLHQGAIMLLGPTMNPKIAFELSERIPHLGLRMKEHSNRALVFATRLKKLGFKVIYPGLEDHPHHELLKSIHNKDYGYGGLLCIDMETEERANKLMSYLQNYGQFGFMAVSLGYYETLMSCSGSSTSSELNSEEKVLAGISPGLVRMSIGYIGTLEQKWNQLEKAVSRLQEYGFPNKN