AlfalfaGEDB | MS.gene07508

M. sativa cultivar XinJiangDaYe / MS.gene07508

KEGG: K01761
GO: GO:0000096 GO:0003674 GO:0003824 GO:0005488 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009069 GO:0009092 GO:0009987 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901605
PFAM: PF01053.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	XP_013468871.1	99.4	180	1	0	1	180	271	450	1.60E-98	368.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	Q9SGU9	76.0	171	41	0	1	171	271	441	5.0e-72	271.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	A0A072VNE2	99.4	180	1	0	1	180	271	450	1.2e-98	368.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053272	MS.gene07508	-0.844988	5.37E-59	-1.69E-46
MS.gene053931	MS.gene07508	0.805887	1.07E-49	-1.69E-46
MS.gene057208	MS.gene07508	0.801212	1.00E-48	-1.69E-46
MS.gene057392	MS.gene07508	0.800262	1.57E-48	-1.69E-46
MS.gene057694	MS.gene07508	0.810458	1.14E-50	-1.69E-46
MS.gene060244	MS.gene07508	0.815696	8.10E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	MTR_1g077890	99.444	180	1	0	1	180	271	450	7.22e-133	379
MS.gene07508.t1	MTR_3g080850	83.333	168	28	0	6	173	274	441	5.37e-93	278

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07508.t1	AT1G64660	76.023	171	41	0	1	171	271	441	1.99e-85	258

Find 46 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATAGTTCAAATGCTATTT+TGG	0.073928	1.3:-55603702	None:intergenic
AAAGTGATTCAATTCTTATT+AGG	0.168129	1.3:-55604178	None:intergenic
TTGCAAAACTATGGACAATT+TGG	0.197366	1.3:+55603950	MS.gene07508:CDS
CATGATGTGGATGGTCTTCT+AGG	0.248249	1.3:-55603829	None:intergenic
AAGTGATTCAATTCTTATTA+GGG	0.263216	1.3:-55604177	None:intergenic
CTATGGACAATTTGGTTTCA+TGG	0.269872	1.3:+55603958	MS.gene07508:CDS
TGGTTTCATGGCTGTTAGTT+TGG	0.281840	1.3:+55603970	MS.gene07508:CDS
ATGAGCTATTTGCAAAACTA+TGG	0.283875	1.3:+55603941	MS.gene07508:CDS
GTATCTAGACTTCAAGAATA+TGG	0.292860	1.3:+55604151	MS.gene07508:CDS
AGGATGTCAATAGGGTATAT+TGG	0.322482	1.3:+55604091	MS.gene07508:CDS
TGTTGGTCCTAATAGCATTA+TGG	0.326242	1.3:-55603672	None:intergenic
TCTGAGGAAAAGGTTCTTGC+TGG	0.335620	1.3:+55604049	MS.gene07508:CDS
GGTTTCATGGCTGTTAGTTT+GGG	0.336700	1.3:+55603971	MS.gene07508:CDS
GAAACACTTATGTCTTGTTC+TGG	0.350339	1.3:+55604001	MS.gene07508:CDS
CAAGGGGCCATAATGCTATT+AGG	0.360521	1.3:+55603665	MS.gene07508:CDS
TTGGGACTTTGGAGCAGAAA+TGG	0.390914	1.3:+55604110	MS.gene07508:CDS
TCAATTCACAACAAAGACTA+TGG	0.391666	1.3:+55603863	MS.gene07508:CDS
TGCTATGTTCTTTCATCCTT+AGG	0.394998	1.3:-55603745	None:intergenic
GGATGTCAATAGGGTATATT+GGG	0.402478	1.3:+55604092	MS.gene07508:CDS
CACAACAAAGACTATGGTTA+TGG	0.412875	1.3:+55603869	MS.gene07508:CDS
GGTCTTGTGAGGATGTCAAT+AGG	0.421102	1.3:+55604082	MS.gene07508:CDS
AATAGGGTATATTGGGACTT+TGG	0.430260	1.3:+55604099	MS.gene07508:CDS
TGAGTTGAATTCTGAGGAAA+AGG	0.445451	1.3:+55604039	MS.gene07508:CDS
GTCTTGTGAGGATGTCAATA+GGG	0.477443	1.3:+55604083	MS.gene07508:CDS
CTAATAGCATTATGGCCCCT+TGG	0.496849	1.3:-55603664	None:intergenic
TGTGGATGGTCTTCTAGGCC+AGG	0.509408	1.3:-55603824	None:intergenic
GAAATGGAATCAGCTTGAAA+AGG	0.516409	1.3:+55604126	MS.gene07508:CDS
GAATCCCTCACTTAGGCCTA+AGG	0.525026	1.3:+55603729	MS.gene07508:CDS
GTTCTTGCTGGAATTTCACC+AGG	0.532752	1.3:+55604061	MS.gene07508:CDS
ATAGCATTATGGCCCCTTGG+TGG	0.543434	1.3:-55603661	None:intergenic
GTGGATGGTCTTCTAGGCCA+GGG	0.553045	1.3:-55603823	None:intergenic
GATTTCAACAATTCATGATG+TGG	0.554996	1.3:-55603842	None:intergenic
TCAACAATTCATGATGTGGA+TGG	0.562975	1.3:-55603838	None:intergenic
TGGACTTCTTTGCATTGACA+TGG	0.579725	1.3:+55603892	MS.gene07508:CDS
AACAAAGACTATGGTTATGG+TGG	0.583091	1.3:+55603872	MS.gene07508:CDS
CTATGATGGATCTCCACCAA+GGG	0.585796	1.3:+55603648	None:intergenic
ATTGACATCCTCACAAGACC+TGG	0.585919	1.3:-55604079	None:intergenic
GAATTTCACCAGGTCTTGTG+AGG	0.587396	1.3:+55604071	MS.gene07508:CDS
TCAGAAAGAATCCCTCACTT+AGG	0.590587	1.3:+55603722	MS.gene07508:CDS
GGATTCAAGGTAATCTACCC+TGG	0.598316	1.3:+55603806	MS.gene07508:CDS
TCATCCTTAGGCCTAAGTGA+GGG	0.616919	1.3:-55603733	None:intergenic
TTCATCCTTAGGCCTAAGTG+AGG	0.628773	1.3:-55603734	None:intergenic
TCTATGATGGATCTCCACCA+AGG	0.633733	1.3:+55603647	None:intergenic
TAGTAGTGAGTTGAATTCTG+AGG	0.646330	1.3:+55604033	MS.gene07508:CDS
TTGTTGCAAACACTAACGCA+CGG	0.672812	1.3:-55603769	None:intergenic
TATGATGGATCTCCACCAAG+GGG	0.715539	1.3:+55603649	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ACTAAAAAAATTAGGATTCA+AGG	+	chr1.3:55603793-55603812	MS.gene07508:CDS	20.0%
!	GCAACAAGACTAAAAAAATT+AGG	+	chr1.3:55603785-55603804	MS.gene07508:CDS	25.0%
!!!	ATAGTTCAAATGCTATTTTG+GGG	-	chr1.3:55603703-55603722	None:intergenic	25.0%
!!!	GATAGTTCAAATGCTATTTT+GGG	-	chr1.3:55603704-55603723	None:intergenic	25.0%
!!!	TGATAGTTCAAATGCTATTT+TGG	-	chr1.3:55603705-55603724	None:intergenic	25.0%
	ATGAGCTATTTGCAAAACTA+TGG	+	chr1.3:55603941-55603960	MS.gene07508:CDS	30.0%
	GATTTCAACAATTCATGATG+TGG	-	chr1.3:55603845-55603864	None:intergenic	30.0%
	GTATCTAGACTTCAAGAATA+TGG	+	chr1.3:55604151-55604170	MS.gene07508:CDS	30.0%
	TCAATTCACAACAAAGACTA+TGG	+	chr1.3:55603863-55603882	MS.gene07508:CDS	30.0%
	TTGCAAAACTATGGACAATT+TGG	+	chr1.3:55603950-55603969	MS.gene07508:CDS	30.0%
	AACAAAGACTATGGTTATGG+TGG	+	chr1.3:55603872-55603891	MS.gene07508:CDS	35.0%
	AATAGGGTATATTGGGACTT+TGG	+	chr1.3:55604099-55604118	MS.gene07508:CDS	35.0%
	AGGATGTCAATAGGGTATAT+TGG	+	chr1.3:55604091-55604110	MS.gene07508:CDS	35.0%
	CACAACAAAGACTATGGTTA+TGG	+	chr1.3:55603869-55603888	MS.gene07508:CDS	35.0%
	GAAATGGAATCAGCTTGAAA+AGG	+	chr1.3:55604126-55604145	MS.gene07508:CDS	35.0%
	GGATGTCAATAGGGTATATT+GGG	+	chr1.3:55604092-55604111	MS.gene07508:CDS	35.0%
	TCAACAATTCATGATGTGGA+TGG	-	chr1.3:55603841-55603860	None:intergenic	35.0%
	TGCTATGTTCTTTCATCCTT+AGG	-	chr1.3:55603748-55603767	None:intergenic	35.0%
	TGTTGGTCCTAATAGCATTA+TGG	-	chr1.3:55603675-55603694	None:intergenic	35.0%
!	CTATGGACAATTTGGTTTCA+TGG	+	chr1.3:55603958-55603977	MS.gene07508:CDS	35.0%
!	GAAACACTTATGTCTTGTTC+TGG	+	chr1.3:55604001-55604020	MS.gene07508:CDS	35.0%
!	TAGTAGTGAGTTGAATTCTG+AGG	+	chr1.3:55604033-55604052	MS.gene07508:CDS	35.0%
!	TGAGTTGAATTCTGAGGAAA+AGG	+	chr1.3:55604039-55604058	MS.gene07508:CDS	35.0%
	GTCTTGTGAGGATGTCAATA+GGG	+	chr1.3:55604083-55604102	MS.gene07508:CDS	40.0%
	TCAGAAAGAATCCCTCACTT+AGG	+	chr1.3:55603722-55603741	MS.gene07508:CDS	40.0%
	TGGTTTCATGGCTGTTAGTT+TGG	+	chr1.3:55603970-55603989	MS.gene07508:CDS	40.0%
	TTGTTGCAAACACTAACGCA+CGG	-	chr1.3:55603772-55603791	None:intergenic	40.0%
!	GGTTTCATGGCTGTTAGTTT+GGG	+	chr1.3:55603971-55603990	MS.gene07508:CDS	40.0%
!	TGGACTTCTTTGCATTGACA+TGG	+	chr1.3:55603892-55603911	MS.gene07508:CDS	40.0%
!!!	GCTATTTTGGGGTTCATTGT+TGG	-	chr1.3:55603692-55603711	None:intergenic	40.0%
	ATTGACATCCTCACAAGACC+TGG	-	chr1.3:55604082-55604101	None:intergenic	45.0%
	CAAGGGGCCATAATGCTATT+AGG	+	chr1.3:55603665-55603684	MS.gene07508:CDS	45.0%
	CATGATGTGGATGGTCTTCT+AGG	-	chr1.3:55603832-55603851	None:intergenic	45.0%
	CTAATAGCATTATGGCCCCT+TGG	-	chr1.3:55603667-55603686	None:intergenic	45.0%
	GGATTCAAGGTAATCTACCC+TGG	+	chr1.3:55603806-55603825	MS.gene07508:CDS	45.0%
	GTTCTTGCTGGAATTTCACC+AGG	+	chr1.3:55604061-55604080	MS.gene07508:CDS	45.0%
	TCATCCTTAGGCCTAAGTGA+GGG	-	chr1.3:55603736-55603755	None:intergenic	45.0%
	TCTGAGGAAAAGGTTCTTGC+TGG	+	chr1.3:55604049-55604068	MS.gene07508:CDS	45.0%
	TTCATCCTTAGGCCTAAGTG+AGG	-	chr1.3:55603737-55603756	None:intergenic	45.0%
!	GAATTTCACCAGGTCTTGTG+AGG	+	chr1.3:55604071-55604090	MS.gene07508:CDS	45.0%
!	GGTCTTGTGAGGATGTCAAT+AGG	+	chr1.3:55604082-55604101	MS.gene07508:CDS	45.0%
!!	TTGGGACTTTGGAGCAGAAA+TGG	+	chr1.3:55604110-55604129	MS.gene07508:CDS	45.0%
	ATAGCATTATGGCCCCTTGG+TGG	-	chr1.3:55603664-55603683	None:intergenic	50.0%
	GAATCCCTCACTTAGGCCTA+AGG	+	chr1.3:55603729-55603748	MS.gene07508:CDS	50.0%
	GTGGATGGTCTTCTAGGCCA+GGG	-	chr1.3:55603826-55603845	None:intergenic	55.0%
	TGTGGATGGTCTTCTAGGCC+AGG	-	chr1.3:55603827-55603846	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	55603650	55604192	55603650	ID=MS.gene07508
chr1.3	mRNA	55603650	55604192	55603650	ID=MS.gene07508.t1;Parent=MS.gene07508
chr1.3	exon	55603650	55604192	55603650	ID=MS.gene07508.t1.exon1;Parent=MS.gene07508.t1
chr1.3	CDS	55603650	55604192	55603650	ID=cds.MS.gene07508.t1;Parent=MS.gene07508.t1

Gene Sequence

>MS.gene07508

ATGATGGATCTCCACCAAGGGGCCATAATGCTATTAGGACCAACAATGAACCCCAAAATAGCATTTGAACTATCAGAAAGAATCCCTCACTTAGGCCTAAGGATGAAAGAACATAGCAACCGTGCGTTAGTGTTTGCAACAAGACTAAAAAAATTAGGATTCAAGGTAATCTACCCTGGCCTAGAAGACCATCCACATCATGAATTGTTGAAATCAATTCACAACAAAGACTATGGTTATGGTGGACTTCTTTGCATTGACATGGAAACTGAAGAAAGAGCTAACAAATTGATGAGCTATTTGCAAAACTATGGACAATTTGGTTTCATGGCTGTTAGTTTGGGTTACTATGAAACACTTATGTCTTGTTCTGGAAGTAGCACTAGTAGTGAGTTGAATTCTGAGGAAAAGGTTCTTGCTGGAATTTCACCAGGTCTTGTGAGGATGTCAATAGGGTATATTGGGACTTTGGAGCAGAAATGGAATCAGCTTGAAAAGGCAGTATCTAGACTTCAAGAATATGGTTTCCCTAATAAGAATTGA

Protein sequence

>MS.gene07508.t1

MMDLHQGAIMLLGPTMNPKIAFELSERIPHLGLRMKEHSNRALVFATRLKKLGFKVIYPGLEDHPHHELLKSIHNKDYGYGGLLCIDMETEERANKLMSYLQNYGQFGFMAVSLGYYETLMSCSGSSTSSELNSEEKVLAGISPGLVRMSIGYIGTLEQKWNQLEKAVSRLQEYGFPNKN