AlfalfaGEDB | MS.gene07514

M. sativa cultivar XinJiangDaYe / MS.gene07514

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0005975 GO:0008150 GO:0008152 GO:0016787 GO:0016798 GO:0044238 GO:0071704
PFAM: PF00332.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07514.t1	KEH42913.1	97	403	12	0	1	403	1	403	1.00E-196	696

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07514.t1	Q8L868	64.7	354	120	2	1	351	1	352	1.3e-131	471.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07514.t1	A0A072VNE5	97.0	403	12	0	1	403	1	403	7.3e-197	696.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049243	MS.gene07514	0.803022	4.25E-49	-1.69E-46
MS.gene051042	MS.gene07514	0.804865	1.76E-49	-1.69E-46
MS.gene052732	MS.gene07514	0.812075	5.09E-51	-1.69E-46
MS.gene053174	MS.gene07514	0.800266	1.56E-48	-1.69E-46

Showing 1 to 4 of 4 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07514.t1	MTR_1g077990	95.782	403	17	0	1	403	1	403	0.0	788
MS.gene07514.t1	MTR_2g086530	57.895	342	139	3	10	348	6	345	4.91e-144	415
MS.gene07514.t1	MTR_2g086530	61.321	318	120	2	32	348	9	324	5.34e-143	412
MS.gene07514.t1	MTR_4g052970	58.567	321	132	1	30	349	28	348	1.98e-140	406
MS.gene07514.t1	MTR_4g084480	52.617	363	168	2	4	362	2	364	6.29e-140	405
MS.gene07514.t1	MTR_4g084480	52.617	363	168	2	4	362	2	364	7.56e-140	405
MS.gene07514.t1	MTR_4g084480	54.971	342	153	1	22	362	16	357	2.36e-139	403
MS.gene07514.t1	MTR_2g019345	51.479	338	160	3	13	347	4	340	9.24e-123	361
MS.gene07514.t1	MTR_4g010200	49.020	357	174	3	11	359	7	363	1.16e-118	351
MS.gene07514.t1	MTR_4g114850	51.097	319	154	2	32	348	27	345	7.88e-111	330

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07514.t1	AT1G32860	60.448	402	151	4	1	396	1	400	1.44e-166	474
MS.gene07514.t1	AT5G42100	67.081	322	102	2	30	347	26	347	1.62e-160	458
MS.gene07514.t1	AT5G42100	67.081	322	102	2	30	347	26	347	2.86e-160	458
MS.gene07514.t1	AT2G27500	61.846	325	122	2	27	349	25	349	7.03e-150	430
MS.gene07514.t1	AT2G27500	61.846	325	122	2	27	349	25	349	1.10e-149	430
MS.gene07514.t1	AT4G18340	49.138	348	176	1	13	359	16	363	5.58e-130	379
MS.gene07514.t1	AT4G18340	49.138	348	176	1	13	359	16	363	6.86e-130	380
MS.gene07514.t1	AT1G30080	52.924	342	155	2	12	347	12	353	2.11e-129	378
MS.gene07514.t1	AT1G30080	52.924	342	155	2	12	347	12	353	6.02e-129	377
MS.gene07514.t1	AT2G27500	62.731	271	99	2	81	349	1	271	1.97e-123	360

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Find 82 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCGAGAAAGTATAAT+GGG	0.428212	1.2:+62634315	MS.gene07514:CDS
AAAGGAGATGGAGATGAGGT+TGG	0.576671	1.2:+62634281	MS.gene07514:CDS
AAATAACCGGAGGAAGAAGT+TGG	0.548180	1.2:-62634611	None:intergenic
AAATCAACTTCAGGTCTCAA+CGG	0.641716	1.2:-62634371	None:intergenic
AACCTGGTCCAACTTCTGAG+AGG	0.694615	1.2:+62634432	MS.gene07514:CDS
AACTTCTTCCTCCGGTTATT+TGG	0.209849	1.2:+62634613	MS.gene07514:CDS
AATAATGGTACTATTGGATC+TGG	0.512155	1.2:+62634569	MS.gene07514:CDS
AATCTAACGATATTTGCTTA+GGG	0.465599	1.2:-62634100	None:intergenic
AATGGTACTATTGGATCTGG+TGG	0.638028	1.2:+62634572	MS.gene07514:CDS
ACAGCATGCTATCATAATGC+AGG	0.570006	1.2:-62634169	None:intergenic

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAATGGTACTATTGGATC+TGG	+	chr1.2:62634569-62634588	MS.gene07514:CDS	30.0%
ATTAGGTTACGATAAAATGC+CGG	+	chr1.2:62634229-62634248	MS.gene07514:CDS	30.0%
GAGAATCCAAGATTATAAAC+AGG	-	chr1.2:62634488-62634507	None:intergenic	30.0%
GCAACAAAATCTGAATCAAT+TGG	+	chr1.2:62633534-62633553	MS.gene07514:CDS	30.0%
GTAACCCTAATAAAATGCAT+TGG	+	chr1.2:62633606-62633625	MS.gene07514:CDS	30.0%
TATATCAGAACGAAAAGTTC+CGG	-	chr1.2:62633988-62634007	None:intergenic	30.0%
TTAAGCTTTCAATCCAAAAC+TGG	+	chr1.2:62634029-62634048	MS.gene07514:CDS	30.0%
TTTGGATTGAAAGCTTAAGA+TGG	-	chr1.2:62634027-62634046	None:intergenic	30.0%
AAATCAACTTCAGGTCTCAA+CGG	-	chr1.2:62634374-62634393	None:intergenic	35.0%
ATATAGTGTCCTATTTGTGC+AGG	+	chr1.2:62633507-62633526	MS.gene07514:intron	35.0%

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	62633389	62634694	62633389	ID=MS.gene07514
chr1.2	mRNA	62633389	62634694	62633389	ID=MS.gene07514.t1;Parent=MS.gene07514
chr1.2	exon	62633389	62633455	62633389	ID=MS.gene07514.t1.exon1;Parent=MS.gene07514.t1
chr1.2	CDS	62633389	62633455	62633389	ID=cds.MS.gene07514.t1;Parent=MS.gene07514.t1
chr1.2	exon	62633529	62634694	62633529	ID=MS.gene07514.t1.exon2;Parent=MS.gene07514.t1
chr1.2	CDS	62633529	62634694	62633529	ID=cds.MS.gene07514.t1;Parent=MS.gene07514.t1

Gene Sequence

>MS.gene07514

ATGGATCGTTCTACATTCCAGCACCGCTATTGCAACTTCATCGTCATTATTATCATTTTCATTACAGGTAAAAATTGCTACTCCTACTACATCTTATTATATAGTCTTAAAATGTAACATATAGTGTCCTATTTGTGCAGGACTAGCAACAAAATCTGAATCAATTGGAATAAACTACGGTCAAATAGCAAACAACCTACCATCACCAGAAAACGTAGTAACCCTAATAAAATGCATTGGAGCAACAAAAGTAAAACTCTACGACGCAGATCCAAAAGTTCTCAAAGCTTTCGCCAACACCGGTATAGAATTCATGGTAGGGCTTGGAAATGAATATCTCTCCAAAATGAAAGACCCTAAACAAGCTCAAGCATGGATCAAAACAAATCTTCAACCCTACCTCCCTTCCACAAAAATCACTTCCATTTTTGTAGGAAATGAAGTTCTCACTTTCAATGACTCTTCTTTAACATCTTCTCTTCTACCAGCAATGCAAAGTGTTCACACTGCACTCATAGTTCTTGGTCTCCATAAACAAATCACTGTCACAACAACTCATTCATTAGCTATACTACAAACTTCTTATCCACCTTCTTCCGGAACTTTTCGTTCTGATATAGCTCCATGCATTGCTTCCATCTTAAGCTTTCAATCCAAAACTGGTTCACCTTTCTTGATAAACGCTTATCCTTACTTTGCTTATAAGGATAACCCTAAGCAAATATCGTTAGATTATGTTTTGTTTCAACCAAACCAAGGAATGGTTGATCCAAAAACAAACCTGCATTATGATAGCATGCTGTTTGCGCAGATCGACGCTGTTTATTCTGCGCTTGGAGCATTAGGTTACGATAAAATGCCGGTGCATATTTCTGAAACAGGTTGGCCTTCGAAAGGAGATGGAGATGAGGTTGGTGCTAATGTTGAAAATGCGAGAAAGTATAATGGGAATGTGATAAAGTTGAGTAGTAAGAAAGGAACACCGTTGAGACCTGAAGTTGATTTGAATATTTATGTTTTTGCACTTTTTAATGAGAATTTGAAACCTGGTCCAACTTCTGAGAGGAATTATGGATTGTTTAAACCTGATGGGAATCCTGTTTATAATCTTGGATTCTCGCTGTCTTCGTCTTCTTCTTCGTCTTCTTCGAATTCGAGTCCTCCTTCGAATGATGGTGGTAATAATGGTACTATTGGATCTGGTGGTGCTCCGCCGCATCCTCCAACTTCTTCCTCCGGTTATTTGGCCATTTCTGGAGCTACTTCACTGGTTAGTAACACTCACACTGCTGCTTCTAAGTTTTGA

Protein sequence

>MS.gene07514.t1

MDRSTFQHRYCNFIVIIIIFITGLATKSESIGINYGQIANNLPSPENVVTLIKCIGATKVKLYDADPKVLKAFANTGIEFMVGLGNEYLSKMKDPKQAQAWIKTNLQPYLPSTKITSIFVGNEVLTFNDSSLTSSLLPAMQSVHTALIVLGLHKQITVTTTHSLAILQTSYPPSSGTFRSDIAPCIASILSFQSKTGSPFLINAYPYFAYKDNPKQISLDYVLFQPNQGMVDPKTNLHYDSMLFAQIDAVYSALGALGYDKMPVHISETGWPSKGDGDEVGANVENARKYNGNVIKLSSKKGTPLRPEVDLNIYVFALFNENLKPGPTSERNYGLFKPDGNPVYNLGFSLSSSSSSSSSNSSPPSNDGGNNGTIGSGGAPPHPPTSSSGYLAISGATSLVSNTHTAASKF