AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053174


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053174.t1 MTR_4g007740 97.708 480 10 1 1 479 1 480 0.0 961
MS.gene053174.t1 MTR_3g053710 39.141 396 220 8 87 476 86 466 1.01e-81 261
MS.gene053174.t1 MTR_3g053980 36.253 491 275 13 11 476 8 485 1.12e-80 259
MS.gene053174.t1 MTR_7g117430 36.804 413 221 10 79 476 97 484 5.57e-72 236
MS.gene053174.t1 MTR_2g028190 39.163 406 215 16 90 476 59 451 7.96e-72 234
MS.gene053174.t1 MTR_1g115210 35.452 409 228 11 79 476 103 486 3.93e-69 228
MS.gene053174.t1 MTR_1g039270 35.616 365 213 6 121 476 118 469 1.15e-67 224
MS.gene053174.t1 MTR_6g085010 33.253 415 243 9 78 476 95 491 1.46e-65 219
MS.gene053174.t1 MTR_3g097150 35.750 400 220 14 93 476 68 446 1.82e-64 215
MS.gene053174.t1 MTR_1g111350 35.623 393 226 8 93 476 93 467 2.48e-63 213
MS.gene053174.t1 MTR_3g046300 34.545 385 224 12 114 476 80 458 2.47e-60 204
MS.gene053174.t1 MTR_5g091130 34.184 392 227 13 110 477 170 554 2.38e-57 199
MS.gene053174.t1 MTR_5g044770 33.889 360 205 13 132 476 87 428 8.19e-53 184
MS.gene053174.t1 MTR_5g080890 32.231 363 212 13 132 477 87 432 1.32e-47 170
MS.gene053174.t1 MTR_8g096990 33.884 363 204 15 132 477 87 430 8.86e-47 168
MS.gene053174.t1 MTR_5g080960 32.231 363 212 13 132 477 87 432 1.26e-46 167
MS.gene053174.t1 MTR_5g008110 31.807 415 235 15 87 477 24 414 2.91e-46 166
MS.gene053174.t1 MTR_0036s0110 32.464 422 237 16 79 477 45 441 2.96e-46 167
MS.gene053174.t1 MTR_8g038280 32.970 367 206 14 132 477 87 434 4.62e-46 166
MS.gene053174.t1 MTR_0036s0070 30.976 410 244 14 79 477 44 425 6.75e-45 162
MS.gene053174.t1 MTR_8g103880 31.389 360 221 9 114 463 99 442 1.15e-44 162
MS.gene053174.t1 MTR_5g038360 31.680 363 215 13 132 477 89 435 1.25e-44 162
MS.gene053174.t1 MTR_0036s0050 31.026 419 241 14 79 477 44 434 2.67e-44 161
MS.gene053174.t1 MTR_2g059460 32.258 403 216 17 103 477 32 405 1.36e-43 159
MS.gene053174.t1 MTR_2g059490 30.841 428 250 18 74 477 4 409 1.99e-43 159
MS.gene053174.t1 MTR_3g028120 30.028 363 222 12 132 477 90 437 2.31e-42 156
MS.gene053174.t1 MTR_6g090290 29.426 401 253 11 93 477 49 435 4.57e-42 155
MS.gene053174.t1 MTR_3g014290 32.361 377 211 13 119 477 67 417 1.43e-41 153
MS.gene053174.t1 MTR_2g067830 32.615 371 222 15 122 477 48 405 1.82e-41 153
MS.gene053174.t1 MTR_1g037630 32.361 377 211 13 119 477 79 429 1.87e-41 153
MS.gene053174.t1 MTR_2g105300 32.754 345 206 14 144 475 50 381 1.54e-40 150
MS.gene053174.t1 MTR_4g109760 33.333 351 195 11 144 477 69 397 1.14e-39 148
MS.gene053174.t1 MTR_3g100500 32.918 401 235 14 91 476 56 437 3.35e-39 147
MS.gene053174.t1 MTR_5g008150 30.100 402 247 12 94 477 26 411 3.69e-39 147
MS.gene053174.t1 MTR_8g039540 30.583 412 245 17 82 477 48 434 1.93e-38 145
MS.gene053174.t1 MTR_8g038310 29.975 397 232 14 93 477 50 412 4.52e-36 138
MS.gene053174.t1 MTR_5g008070 31.335 367 210 15 131 477 81 425 5.58e-36 138
MS.gene053174.t1 MTR_5g044570 29.744 390 219 14 102 477 62 410 6.21e-36 138
MS.gene053174.t1 MTR_8g038250 30.495 364 199 13 132 477 87 414 8.71e-36 137
MS.gene053174.t1 MTR_0024s0040 30.025 403 248 12 93 477 23 409 4.79e-35 135
MS.gene053174.t1 MTR_5g012490 27.619 420 235 17 117 479 65 472 1.76e-34 135
MS.gene053174.t1 MTR_7g105850 28.670 436 249 16 88 476 45 465 2.51e-34 134
MS.gene053174.t1 MTR_6g088760 28.000 400 253 16 80 459 34 418 1.20e-33 133
MS.gene053174.t1 MTR_3g068000 29.049 389 219 15 129 478 73 443 1.08e-31 127
MS.gene053174.t1 MTR_7g080230 27.907 430 250 19 87 477 23 431 1.97e-31 126
MS.gene053174.t1 MTR_5g016260 30.303 363 207 15 136 477 95 432 2.05e-31 127
MS.gene053174.t1 MTR_5g016260 30.303 363 207 15 136 477 95 432 2.32e-31 127
MS.gene053174.t1 MTR_1g078240 29.306 389 225 16 122 477 60 431 3.21e-31 125
MS.gene053174.t1 MTR_4g100990 27.338 417 239 17 116 477 64 471 4.93e-31 125
MS.gene053174.t1 MTR_7g062360 31.250 384 217 18 129 479 59 428 6.33e-31 124
MS.gene053174.t1 MTR_1g060750 29.483 329 200 10 162 477 66 375 1.18e-30 122
MS.gene053174.t1 MTR_2g055840 29.834 362 199 15 136 463 20 360 2.71e-30 121
MS.gene053174.t1 MTR_1g078240 29.306 389 224 17 122 477 60 430 4.14e-30 122
MS.gene053174.t1 MTR_4g045857 30.945 307 179 12 74 364 4 293 1.94e-29 117
MS.gene053174.t1 MTR_7g021510 26.859 417 251 17 98 477 35 434 6.16e-29 119
MS.gene053174.t1 MTR_3g065160 27.441 379 210 19 134 477 79 427 6.74e-29 118
MS.gene053174.t1 MTR_4g095270 28.889 360 216 14 136 477 87 424 7.61e-28 117
MS.gene053174.t1 MTR_4g095270 28.889 360 216 14 136 477 87 424 1.01e-27 116
MS.gene053174.t1 MTR_5g077850 27.882 373 232 15 129 477 79 438 6.24e-27 113
MS.gene053174.t1 MTR_4g056420 29.178 377 215 18 134 478 82 438 2.06e-25 108
MS.gene053174.t1 MTR_1g078240 29.794 339 192 15 122 431 60 381 2.63e-24 104
MS.gene053174.t1 MTR_5g008090 31.068 309 181 12 185 477 21 313 3.25e-24 103
MS.gene053174.t1 MTR_1g061940 28.833 437 249 22 80 478 34 446 4.09e-23 102
MS.gene053174.t1 MTR_2g070430 25.000 400 243 14 111 474 73 451 5.41e-22 99.0
MS.gene053174.t1 MTR_7g080230 27.714 350 199 16 161 477 33 361 6.58e-22 97.8
MS.gene053174.t1 MTR_2g084550 29.365 378 214 17 134 478 82 439 1.88e-21 97.4
MS.gene053174.t1 MTR_6g084710 27.041 392 243 17 113 476 174 550 2.46e-21 97.4
MS.gene053174.t1 MTR_7g102750 28.877 374 220 18 134 478 86 442 4.96e-21 96.3
MS.gene053174.t1 MTR_2g063110 26.580 459 248 22 87 476 70 508 1.21e-20 95.1
MS.gene053174.t1 MTR_3g096930 26.810 373 228 21 131 479 86 437 3.21e-20 93.2
MS.gene053174.t1 MTR_3g087780 25.227 440 271 17 64 476 42 450 5.56e-20 93.2
MS.gene053174.t1 MTR_7g102750 30.921 304 169 15 134 411 86 374 1.33e-17 85.5
MS.gene053174.t1 MTR_5g061690 24.390 410 262 17 92 476 63 449 1.55e-17 85.5
MS.gene053174.t1 MTR_1g029810 25.474 369 234 15 134 479 62 412 1.66e-17 84.7
MS.gene053174.t1 MTR_5g077920 25.000 412 261 16 104 477 26 427 2.05e-17 84.7
MS.gene053174.t1 MTR_1g029810 25.474 369 234 15 134 479 62 412 2.74e-17 84.3
MS.gene053174.t1 MTR_6g084710 28.470 281 174 11 113 380 174 440 6.06e-17 83.6
MS.gene053174.t1 MTR_1g072450 26.579 380 205 18 143 472 60 415 6.14e-17 83.2
MS.gene053174.t1 MTR_8g075010 27.200 375 217 17 132 476 101 449 8.26e-17 83.2
MS.gene053174.t1 MTR_4g117090 24.178 426 225 19 119 472 39 438 9.79e-16 79.7
MS.gene053174.t1 MTR_3g087780 26.791 321 198 12 172 476 9 308 2.61e-14 74.7
MS.gene053174.t1 MTR_3g087780 26.791 321 198 12 172 476 45 344 5.62e-14 73.9
MS.gene053174.t1 MTR_2g022450 24.934 381 212 20 143 472 54 411 3.16e-13 71.6
MS.gene053174.t1 MTR_2g022320 23.896 385 227 12 134 472 41 405 1.16e-12 70.1
MS.gene053174.t1 MTR_1g072380 24.627 402 222 16 129 472 54 432 2.03e-12 69.3
MS.gene053174.t1 MTR_8g075090 27.331 311 178 16 134 419 117 404 3.45e-12 68.9
MS.gene053174.t1 MTR_2g022430 23.650 389 231 15 132 472 40 410 2.60e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053174.t1 AT1G79720 57.011 435 181 4 46 476 50 482 1.68e-170 489
MS.gene053174.t1 AT5G10770 43.467 398 207 10 87 477 88 474 1.83e-97 302
MS.gene053174.t1 AT5G10760 39.036 415 225 12 69 476 71 464 7.58e-77 248
MS.gene053174.t1 AT3G61820 35.904 415 235 10 79 476 83 483 8.45e-69 228
MS.gene053174.t1 AT3G18490 34.404 436 246 12 64 476 82 500 4.05e-68 226
MS.gene053174.t1 AT1G01300 35.990 414 230 13 79 477 92 485 9.23e-68 225
MS.gene053174.t1 AT1G25510 37.408 409 213 11 90 476 96 483 1.44e-67 224
MS.gene053174.t1 AT3G20015 32.874 435 263 9 54 476 53 470 4.42e-67 223
MS.gene053174.t1 AT3G59080 31.847 471 269 16 54 479 72 535 2.19e-56 196
MS.gene053174.t1 AT2G42980 34.615 416 235 16 95 479 118 527 5.72e-56 195
MS.gene053174.t1 AT2G03200 35.616 365 202 12 132 476 107 458 6.95e-56 193
MS.gene053174.t1 AT1G09750 34.316 373 215 12 119 476 91 448 8.73e-49 174
MS.gene053174.t1 AT3G54400 32.626 377 211 13 119 477 74 425 1.44e-46 167
MS.gene053174.t1 AT1G64830 33.702 362 206 14 132 477 86 429 2.31e-44 161
MS.gene053174.t1 AT5G33340 31.313 396 246 11 93 477 55 435 6.86e-44 160
MS.gene053174.t1 AT3G59080 29.299 471 245 15 54 479 72 499 7.27e-44 161
MS.gene053174.t1 AT1G31450 30.958 407 245 14 95 477 48 442 1.50e-43 159
MS.gene053174.t1 AT2G35615 32.692 416 236 16 88 477 47 444 7.56e-43 157
MS.gene053174.t1 AT3G25700 30.077 389 239 13 117 478 69 451 1.42e-42 157
MS.gene053174.t1 AT5G07030 29.647 425 243 16 73 477 67 455 7.06e-42 155
MS.gene053174.t1 AT4G30030 29.508 427 218 18 102 479 30 422 5.52e-38 144
MS.gene053174.t1 AT2G28040 28.608 388 235 12 101 477 26 382 5.08e-37 140
MS.gene053174.t1 AT2G28040 28.608 388 235 12 101 477 35 391 8.13e-37 140
MS.gene053174.t1 AT5G36260 27.990 418 240 18 98 477 40 434 1.27e-36 141
MS.gene053174.t1 AT2G28010 29.692 357 211 9 132 477 65 392 7.26e-36 137
MS.gene053174.t1 AT4G30040 27.896 423 239 17 79 471 41 427 2.85e-35 136
MS.gene053174.t1 AT2G28030 30.294 340 199 9 147 477 78 388 1.44e-34 134
MS.gene053174.t1 AT5G02190 31.733 375 201 20 141 476 84 442 1.00e-33 132
MS.gene053174.t1 AT3G02740 30.521 403 225 19 108 477 60 440 9.58e-33 130
MS.gene053174.t1 AT3G52500 30.102 392 215 13 132 477 90 468 2.76e-32 129
MS.gene053174.t1 AT2G28225 30.411 365 202 14 132 477 67 398 4.35e-32 127
MS.gene053174.t1 AT5G45120 30.070 429 231 21 111 476 56 478 1.93e-31 127
MS.gene053174.t1 AT2G23945 27.873 409 244 17 93 476 66 448 3.50e-30 122
MS.gene053174.t1 AT3G02740 30.423 378 209 18 132 477 10 365 3.61e-30 122
MS.gene053174.t1 AT2G28220 29.396 364 207 12 132 477 67 398 9.31e-30 120
MS.gene053174.t1 AT5G43100 29.006 362 216 13 136 479 82 420 2.10e-29 120
MS.gene053174.t1 AT5G43100 29.363 361 216 14 136 479 82 420 2.21e-29 122
MS.gene053174.t1 AT2G39710 28.307 378 222 16 129 472 64 426 9.97e-29 118
MS.gene053174.t1 AT1G65240 26.420 405 240 18 108 477 46 427 1.48e-28 118
MS.gene053174.t1 AT1G66180 26.893 383 214 16 134 479 76 429 1.22e-27 115
MS.gene053174.t1 AT1G05840 26.353 425 252 17 94 477 35 439 2.38e-27 115
MS.gene053174.t1 AT3G12700 26.603 421 254 18 85 477 68 461 3.96e-27 114
MS.gene053174.t1 AT3G50050 28.611 360 218 16 136 477 99 437 4.20e-27 115
MS.gene053174.t1 AT5G37540 28.075 374 225 16 134 479 84 441 1.46e-26 112
MS.gene053174.t1 AT2G36670 26.636 428 262 18 83 477 50 458 2.86e-24 105
MS.gene053174.t1 AT2G36670 26.559 433 261 18 83 477 50 463 4.51e-24 105
MS.gene053174.t1 AT1G49050 27.019 359 221 17 147 476 49 395 4.21e-23 101
MS.gene053174.t1 AT2G36670 28.075 374 220 16 134 477 38 392 7.41e-23 101
MS.gene053174.t1 AT2G36670 28.075 374 220 16 134 477 38 392 7.41e-23 101
MS.gene053174.t1 AT1G08210 29.600 375 214 16 134 478 122 476 1.83e-22 100
MS.gene053174.t1 AT1G08210 29.600 375 214 16 134 478 136 490 1.87e-22 100
MS.gene053174.t1 AT1G49050 27.019 359 221 17 147 476 222 568 2.18e-22 100
MS.gene053174.t1 AT1G08210 29.600 375 214 16 134 478 88 442 2.29e-22 100
MS.gene053174.t1 AT4G12920 25.737 373 242 11 114 476 40 387 3.60e-22 98.6
MS.gene053174.t1 AT5G10080 26.620 432 257 21 74 476 53 453 4.95e-21 96.3
MS.gene053174.t1 AT5G22850 27.614 373 221 15 136 477 87 441 6.23e-21 95.9
MS.gene053174.t1 AT5G24820 31.429 245 150 10 239 476 166 399 6.17e-20 92.0
MS.gene053174.t1 AT3G51360 27.206 408 246 20 95 476 63 445 6.67e-20 92.8
MS.gene053174.t1 AT3G51360 27.206 408 246 20 95 476 53 435 6.86e-20 92.8
MS.gene053174.t1 AT1G08210 27.930 401 214 16 134 478 88 469 6.49e-19 89.7
MS.gene053174.t1 AT1G77480 26.330 376 223 19 132 476 67 419 8.61e-19 89.0
MS.gene053174.t1 AT1G77480 26.330 376 223 19 132 476 67 419 1.39e-18 88.6
MS.gene053174.t1 AT3G51360 28.302 371 221 19 129 476 3 351 3.22e-18 87.0
MS.gene053174.t1 AT4G35880 27.027 370 220 17 132 476 107 451 3.71e-18 87.4
MS.gene053174.t1 AT2G17760 25.424 413 244 21 92 476 73 449 4.40e-18 87.4
MS.gene053174.t1 AT4G16563 26.726 449 240 18 103 477 59 492 4.43e-18 87.4
MS.gene053174.t1 AT1G49050 30.380 237 141 13 147 370 222 447 7.56e-18 86.3
MS.gene053174.t1 AT3G42550 26.810 373 205 17 123 478 70 391 2.89e-17 84.3
MS.gene053174.t1 AT3G51360 27.676 383 226 20 95 451 63 420 2.02e-15 78.6
MS.gene053174.t1 AT3G51360 27.676 383 226 20 95 451 53 410 2.11e-15 78.6
MS.gene053174.t1 AT4G35880 27.577 359 204 18 132 459 107 440 1.02e-14 76.6
MS.gene053174.t1 AT3G51340 25.740 439 248 24 83 476 42 447 1.02e-14 77.0
MS.gene053174.t1 AT3G51360 27.348 362 213 19 95 431 63 399 2.43e-14 75.1
MS.gene053174.t1 AT3G51360 27.348 362 213 19 95 431 53 389 2.97e-14 74.7
MS.gene053174.t1 AT1G44130 24.747 396 235 20 115 476 33 399 1.51e-13 72.8
MS.gene053174.t1 AT3G51340 25.167 449 250 24 83 476 42 459 1.88e-13 72.8
MS.gene053174.t1 AT3G51360 29.766 299 162 17 95 370 63 336 2.86e-13 71.2
MS.gene053174.t1 AT1G03220 25.926 378 210 17 144 472 58 414 1.31e-12 70.1
MS.gene053174.t1 AT3G25700 31.429 140 86 4 117 247 69 207 1.42e-12 69.3
MS.gene053174.t1 AT3G51340 26.184 359 194 20 83 397 42 373 3.38e-12 68.6
MS.gene053174.t1 AT3G51340 26.257 358 193 20 83 396 42 372 4.31e-12 68.2
MS.gene053174.t1 AT3G51360 26.959 319 198 16 171 476 13 309 5.51e-12 67.8
MS.gene053174.t1 AT3G51360 26.959 319 198 16 171 476 13 309 5.51e-12 67.8
MS.gene053174.t1 AT3G51350 25.987 304 177 16 134 411 106 387 3.61e-11 65.9
MS.gene053174.t1 AT5G48430 25.641 234 152 9 256 472 161 389 5.20e-11 64.7

Find 109 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACCAGCGCTTTCAATTT+TGG 0.116640 4.2:-92083014 MS.gene053174:CDS
TTCCCTTGCAAATCCAATTT+TGG 0.138834 4.2:+92082763 None:intergenic
ATTAGCTTCTGGTATAAATT+TGG 0.167225 4.2:-92083803 MS.gene053174:CDS
GGTTTATTTGGCGGAGTTTC+CGG 0.173823 4.2:-92083409 MS.gene053174:CDS
TACCAGAAGCTAATGGAATT+TGG 0.188959 4.2:+92083812 None:intergenic
CTGCTAAACTCACTTGATTC+TGG 0.197254 4.2:+92084570 None:intergenic
GCTCAAAGAGGAAAATTAAT+TGG 0.217816 4.2:-92083948 MS.gene053174:CDS
CTGTAGTAAATTGAAGATTT+TGG 0.227131 4.2:+92083593 None:intergenic
ATCACTCTACAATGCTTTAA+AGG 0.230293 4.2:-92083071 MS.gene053174:CDS
AGGAACAACAAAGGTTTATT+TGG 0.239871 4.2:-92083421 MS.gene053174:CDS
CAAACTTGTGAAACATCTTT+TGG 0.244817 4.2:+92082881 None:intergenic
GCTTCTGGTTCGTTAGTTAT+AGG 0.255179 4.2:-92083286 MS.gene053174:CDS
TTGCAAAGGAACCATCAATT+TGG 0.275677 4.2:-92084612 MS.gene053174:CDS
GATGCCAAACAGTCCAAAAT+TGG 0.277573 4.2:-92082776 MS.gene053174:CDS
TGTAACTACACTGTTAATTA+TGG 0.278665 4.2:-92083532 MS.gene053174:CDS
TTATAGGAAGAGGAGTTAGA+AGG 0.297373 4.2:+92083643 None:intergenic
ATTGCATAGTAATGAGTTAT+AGG 0.299729 4.2:+92083627 None:intergenic
TGGCGGAGTTTCCGGTATAA+TGG 0.306505 4.2:-92083401 MS.gene053174:CDS
AACCTCTATCCTTCATTTCC+AGG 0.323356 4.2:+92083974 None:intergenic
TCCAATTGCTTACACCAGTA+TGG 0.324069 4.2:-92083233 MS.gene053174:CDS
TTAAACTACATTGTGACAAT+AGG 0.336630 4.2:-92083775 MS.gene053174:CDS
CTTTACTTTATCATTGCAAA+TGG 0.351371 4.2:-92084675 MS.gene053174:CDS
GGCGGCATTCTAATTGATTC+GGG 0.357040 4.2:-92083118 MS.gene053174:CDS
GGCGGAGTTTCCGGTATAAT+GGG 0.359276 4.2:-92083400 MS.gene053174:CDS
GGTGTTGAACACCTTAGTTT+TGG 0.364925 4.2:-92083481 MS.gene053174:CDS
AACCCTTTGAACCAAATTGA+TGG 0.374016 4.2:+92084601 None:intergenic
GTTTCCGGTATAATGGGATT+AGG 0.374940 4.2:-92083394 MS.gene053174:CDS
TCTCAAACCAATACTACATT+TGG 0.375336 4.2:-92083349 MS.gene053174:CDS
ATCCAAATTCCATTAGCTTC+TGG 0.382267 4.2:-92083814 MS.gene053174:CDS
AGATGTTTCACAAGTTTGTT+TGG 0.383515 4.2:-92082876 MS.gene053174:CDS
CGGCGGCATTCTAATTGATT+CGG 0.391462 4.2:-92083119 MS.gene053174:CDS
GTTCTCAAAATGCATACTTA+AGG 0.391586 4.2:+92082946 None:intergenic
AACCATCAATTTGGTTCAAA+GGG 0.397366 4.2:-92084603 MS.gene053174:CDS
TTTACTTTATCATTGCAAAT+GGG 0.400260 4.2:-92084674 MS.gene053174:CDS
GCGTTCGTTCAATGCAAAAC+AGG 0.405597 4.2:-92083885 MS.gene053174:CDS
GACCCATGTTAAGTCACTTC+CGG 0.405924 4.2:+92083717 None:intergenic
ACAACAGATAGTGGAGCTTC+TGG 0.413420 4.2:-92083301 MS.gene053174:CDS
ACAGTGTAGTTACAACTAGA+TGG 0.419587 4.2:+92083541 None:intergenic
TGCTAAACTCACTTGATTCT+GGG 0.420600 4.2:+92084571 None:intergenic
GATACATGTTTCAATCTGAC+TGG 0.429219 4.2:-92082992 MS.gene053174:CDS
ACCATACTGGTGTAAGCAAT+TGG 0.433713 4.2:+92083232 None:intergenic
AACTCCTCCAAATGTAGTAT+TGG 0.435957 4.2:+92083342 None:intergenic
TATAGGAAGAGGAGTTAGAA+GGG 0.438177 4.2:+92083644 None:intergenic
CAAAATCTTCAATTTACTAC+AGG 0.450090 4.2:-92083592 MS.gene053174:CDS
TGGTTTGAGATATCATTGAT+AGG 0.450378 4.2:+92083362 None:intergenic
GAAAATGACATGGCCATCAT+TGG 0.451254 4.2:-92082833 MS.gene053174:CDS
AAATTTATACCAGAAGCTAA+TGG 0.452517 4.2:+92083805 None:intergenic
GAGTTAGAAGGGTTGAAAAC+AGG 0.454527 4.2:+92083655 None:intergenic
GAACCATCAATTTGGTTCAA+AGG 0.454718 4.2:-92084604 MS.gene053174:CDS
TTTCAATCTGACTGGGATTG+AGG 0.457854 4.2:-92082984 MS.gene053174:CDS
ATTGAAAGCGCTGGTGCAGT+AGG 0.468332 4.2:+92083019 None:intergenic
TGCTATTATCCTGGAAATGA+AGG 0.469534 4.2:-92083983 MS.gene053174:CDS
CTACATTGTGACAATAGGAT+TGG 0.476581 4.2:-92083770 MS.gene053174:CDS
CTGAAATACCTCCAAAACTA+AGG 0.477800 4.2:+92083470 None:intergenic
GAAGCTCCACTATCTGTTGT+TGG 0.483250 4.2:+92083304 None:intergenic
TGTTTACCAACAACAGATAG+TGG 0.485285 4.2:-92083310 MS.gene053174:CDS
TTGCTGATAATTCCCAATGA+TGG 0.485574 4.2:+92082820 None:intergenic
AACAACAAAGGTTTATTTGG+CGG 0.485648 4.2:-92083418 MS.gene053174:CDS
TAGTAATGAGTTATAGGAAG+AGG 0.486105 4.2:+92083633 None:intergenic
GCTATACAAGATACAAGCTT+TGG 0.488883 4.2:-92083145 MS.gene053174:CDS
GGAGAAAGGTGCTATTATCC+TGG 0.501530 4.2:-92083992 MS.gene053174:CDS
CTGTGGATTCGAAACCATAC+TGG 0.504481 4.2:+92083219 None:intergenic
AAAATGACATGGCCATCATT+GGG 0.506693 4.2:-92082832 MS.gene053174:CDS
TACATTGTGACAATAGGATT+GGG 0.507768 4.2:-92083769 MS.gene053174:CDS
TACACTGTTAATTATGGTGA+TGG 0.513189 4.2:-92083526 MS.gene053174:CDS
TCTTCCTAATCCCATTATAC+CGG 0.514997 4.2:+92083390 None:intergenic
TTTAAAGCATTGTAGAGTGA+TGG 0.518382 4.2:+92083073 None:intergenic
AGTCCAAAATTGGATTTGCA+AGG 0.526949 4.2:-92082766 MS.gene053174:CDS
CAAACCAATACTACATTTGG+AGG 0.533626 4.2:-92083346 MS.gene053174:CDS
TCATTTACTGATGGAGAGCT+AGG 0.535270 4.2:-92083502 MS.gene053174:CDS
TACTTTATCATTGCAAATGG+GGG 0.538295 4.2:-92084672 MS.gene053174:CDS
AGGATTCGAGCAAAGGTCAC+TGG 0.542029 4.2:-92083865 MS.gene053174:CDS
ATCCTGGAAATGAAGGATAG+AGG 0.549194 4.2:-92083976 MS.gene053174:CDS
GCAAAACAGGATTCGAGCAA+AGG 0.549551 4.2:-92083872 MS.gene053174:CDS
TTACTTTATCATTGCAAATG+GGG 0.552454 4.2:-92084673 MS.gene053174:CDS
GGGGACGGTGATCACGAGAC+TGG 0.553312 4.2:-92083098 MS.gene053174:CDS
ACATAAAAGTTTGACAGCTG+TGG 0.554888 4.2:+92083202 None:intergenic
GTATCCAAAATTGAAAGCGC+TGG 0.559484 4.2:+92083010 None:intergenic
ATACATGTTTCAATCTGACT+GGG 0.569669 4.2:-92082991 MS.gene053174:CDS
GTCCAAAATTGGATTTGCAA+GGG 0.571372 4.2:-92082765 MS.gene053174:CDS
TCAAAATGCATACTTAAGGT+AGG 0.585670 4.2:+92082950 None:intergenic
TTGAAAGCGCTGGTGCAGTA+GGG 0.585756 4.2:+92083020 None:intergenic
GGTGATGGATCATTTACTGA+TGG 0.587322 4.2:-92083511 MS.gene053174:CDS
TCAAAGTGCAAATGTTGCAA+AGG 0.591098 4.2:-92084626 MS.gene053174:CDS
AACCTCACCGGCATAGATGT+TGG 0.592272 4.2:-92083175 MS.gene053174:CDS
ATACCGGAAGTGACTTAACA+TGG 0.592681 4.2:-92083720 MS.gene053174:CDS
CACACCACCAACATCTATGC+CGG 0.596117 4.2:+92083168 None:intergenic
ATGACTGTGATAATCGATAC+CGG 0.597232 4.2:-92083736 MS.gene053174:CDS
ATTATCAGCAAAGGAATCAG+AGG 0.598713 4.2:-92082808 MS.gene053174:CDS
CATTCTAATTGATTCGGGGA+CGG 0.599880 4.2:-92083113 MS.gene053174:CDS
AGTTATAGGTAACGAGTCGT+CGG 0.608924 4.2:-92083272 MS.gene053174:CDS
CGGCATAGATGTTGGTGGTG+TGG 0.619156 4.2:-92083167 MS.gene053174:CDS
GATACAAGCTTTGGCAACGG+CGG 0.621391 4.2:-92083136 MS.gene053174:CDS
GGTTGTGGTAGGAACAACAA+AGG 0.627341 4.2:-92083430 MS.gene053174:CDS
TGACTATAACATGACATACA+AGG 0.632056 4.2:+92083685 None:intergenic
ATGACATACAAGGATCACAT+TGG 0.633313 4.2:+92083695 None:intergenic
TCATTGGGAATTATCAGCAA+AGG 0.636393 4.2:-92082817 MS.gene053174:CDS
CTCACCGGCATAGATGTTGG+TGG 0.638961 4.2:-92083172 MS.gene053174:CDS
CAAGATACAAGCTTTGGCAA+CGG 0.651619 4.2:-92083139 MS.gene053174:CDS
GATCTGAATGTGGATGCAGT+TGG 0.657282 4.2:-92082917 MS.gene053174:CDS
TTATCAGCAAAGGAATCAGA+GGG 0.658240 4.2:-92082807 MS.gene053174:CDS
ATAGAGGTTATTGCTCAAAG+AGG 0.659200 4.2:-92083960 MS.gene053174:CDS
GAACAATGTTGATCTGAATG+TGG 0.668148 4.2:-92082927 MS.gene053174:CDS
ATGTCATGTTATAGTCAACA+AGG 0.669193 4.2:-92083679 MS.gene053174:CDS
TCTTTCTGATGAAAATGACA+TGG 0.672995 4.2:-92082843 MS.gene053174:CDS
GCGGCATTCTAATTGATTCG+GGG 0.686863 4.2:-92083117 MS.gene053174:CDS
TACCGGAAGTGACTTAACAT+GGG 0.691503 4.2:-92083719 MS.gene053174:CDS
CACCAACATCTATGCCGGTG+AGG 0.705570 4.2:+92083173 None:intergenic
TAAACTCACTTGATTCTGGG+AGG 0.709976 4.2:+92084574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATGTGATTTTTTA+TGG - chr4.2:92082926-92082945 MS.gene053174:CDS 10.0%
!! AAAACAAAAGAAAGAAAAAA+TGG + chr4.2:92082775-92082794 None:intergenic 15.0%
!!! ATATCTTCTTTTAATACTTT+CGG + chr4.2:92083274-92083293 None:intergenic 15.0%
!!! TTTTTTTTCAAATTTCACAT+TGG - chr4.2:92082963-92082982 MS.gene053174:CDS 15.0%
!! ACAACATTAGAGATTTAAAA+TGG + chr4.2:92083379-92083398 None:intergenic 20.0%
!! AGATTCTTATAACAGTAAAA+AGG + chr4.2:92083018-92083037 None:intergenic 20.0%
!! TTTACTTTATCATTGCAAAT+GGG - chr4.2:92082797-92082816 MS.gene053174:CDS 20.0%
!!! TATCTTCTTTTAATACTTTC+GGG + chr4.2:92083273-92083292 None:intergenic 20.0%
!!! TTCTTTGAATCTGAATTTTT+AGG - chr4.2:92083453-92083472 MS.gene053174:CDS 20.0%
! AAATTTATACCAGAAGCTAA+TGG + chr4.2:92083669-92083688 None:intergenic 25.0%
! ATTGCATAGTAATGAGTTAT+AGG + chr4.2:92083847-92083866 None:intergenic 25.0%
! CAAAATCTTCAATTTACTAC+AGG - chr4.2:92083879-92083898 MS.gene053174:CDS 25.0%
! CTTTACTTTATCATTGCAAA+TGG - chr4.2:92082796-92082815 MS.gene053174:CDS 25.0%
! TATTATCTTGGAAATGAGAA+AGG - chr4.2:92083415-92083434 MS.gene053174:CDS 25.0%
! TGTAACTACACTGTTAATTA+TGG - chr4.2:92083939-92083958 MS.gene053174:CDS 25.0%
! TTAAACTACATTGTGACAAT+AGG - chr4.2:92083696-92083715 MS.gene053174:CDS 25.0%
! TTACTTTATCATTGCAAATG+GGG - chr4.2:92082798-92082817 MS.gene053174:CDS 25.0%
!! ATCTTCTTTTAATACTTTCG+GGG + chr4.2:92083272-92083291 None:intergenic 25.0%
!! ATTAGCTTCTGGTATAAATT+TGG - chr4.2:92083668-92083687 MS.gene053174:CDS 25.0%
!! CTGTAGTAAATTGAAGATTT+TGG + chr4.2:92083881-92083900 None:intergenic 25.0%
!!! TCAGTTAGTAAGTTTGTTTT+TGG - chr4.2:92084020-92084039 MS.gene053174:intron 25.0%
!!! TGAATCTGAATTTTTAGGAA+AGG - chr4.2:92083458-92083477 MS.gene053174:CDS 25.0%
AACAACAAAGGTTTATTTGG+CGG - chr4.2:92084053-92084072 MS.gene053174:intron 30.0%
ACAGATAAGAAACCAATGAT+GGG + chr4.2:92083071-92083090 None:intergenic 30.0%
ACTCATAGTTTACTGATAAG+TGG + chr4.2:92083246-92083265 None:intergenic 30.0%
AGGAACAACAAAGGTTTATT+TGG - chr4.2:92084050-92084069 MS.gene053174:intron 30.0%
ATACATGTTTCAATCTGACT+GGG - chr4.2:92084480-92084499 MS.gene053174:intron 30.0%
ATCACTCTACAATGCTTTAA+AGG - chr4.2:92084400-92084419 MS.gene053174:intron 30.0%
ATGTCATGTTATAGTCAACA+AGG - chr4.2:92083792-92083811 MS.gene053174:CDS 30.0%
CTCATAGTTTACTGATAAGT+GGG + chr4.2:92083245-92083264 None:intergenic 30.0%
GCTCAAAGAGGAAAATTAAT+TGG - chr4.2:92083523-92083542 MS.gene053174:CDS 30.0%
GTTCTCAAAATGCATACTTA+AGG + chr4.2:92084528-92084547 None:intergenic 30.0%
TACACTGTTAATTATGGTGA+TGG - chr4.2:92083945-92083964 MS.gene053174:CDS 30.0%
TACATTGTGACAATAGGATT+GGG - chr4.2:92083702-92083721 MS.gene053174:CDS 30.0%
TACTTTATCATTGCAAATGG+GGG - chr4.2:92082799-92082818 MS.gene053174:CDS 30.0%
TAGTAATGAGTTATAGGAAG+AGG + chr4.2:92083841-92083860 None:intergenic 30.0%
TCAAAATGCATACTTAAGGT+AGG + chr4.2:92084524-92084543 None:intergenic 30.0%
TCTCAAACCAATACTACATT+TGG - chr4.2:92084122-92084141 MS.gene053174:intron 30.0%
TCTTTCTGATGAAAATGACA+TGG - chr4.2:92084628-92084647 MS.gene053174:CDS 30.0%
TGACTATAACATGACATACA+AGG + chr4.2:92083789-92083808 None:intergenic 30.0%
TTATAGAAAACACCCATCAT+TGG - chr4.2:92083056-92083075 MS.gene053174:CDS 30.0%
! AAATCCAATTTTGGACTGTT+TGG + chr4.2:92084702-92084721 None:intergenic 30.0%
! AACCATCAATTTGGTTCAAA+GGG - chr4.2:92082868-92082887 MS.gene053174:CDS 30.0%
! AGATGTTTCACAAGTTTGTT+TGG - chr4.2:92084595-92084614 MS.gene053174:CDS 30.0%
! CAAACTTGTGAAACATCTTT+TGG + chr4.2:92084593-92084612 None:intergenic 30.0%
! GTTCATAAGTGCTATTATCT+TGG - chr4.2:92083403-92083422 MS.gene053174:CDS 30.0%
! TGGTTTGAGATATCATTGAT+AGG + chr4.2:92084112-92084131 None:intergenic 30.0%
!! GAATTTTTAGGAAAGGAGAA+AGG - chr4.2:92083465-92083484 MS.gene053174:CDS 30.0%
!! TGATGGGTGTTTTCTATAAA+GGG + chr4.2:92083055-92083074 None:intergenic 30.0%
!! TTTAAAGCATTGTAGAGTGA+TGG + chr4.2:92084401-92084420 None:intergenic 30.0%
!!! AGTAAGTTTGTTTTTGGTTG+TGG - chr4.2:92084026-92084045 MS.gene053174:intron 30.0%
!!! ATGATGGGTGTTTTCTATAA+AGG + chr4.2:92083056-92083075 None:intergenic 30.0%
!!! GAGTTTTTGAAACAGTTTTC+TGG - chr4.2:92084425-92084444 MS.gene053174:intron 30.0%
AAAATGACATGGCCATCATT+GGG - chr4.2:92084639-92084658 MS.gene053174:CDS 35.0%
AACACGCGATATTACAAGTT+CGG - chr4.2:92083171-92083190 MS.gene053174:CDS 35.0%
AACCCTTTGAACCAAATTGA+TGG + chr4.2:92082873-92082892 None:intergenic 35.0%
AACTCCTCCAAATGTAGTAT+TGG + chr4.2:92084132-92084151 None:intergenic 35.0%
ACAGTGTAGTTACAACTAGA+TGG + chr4.2:92083933-92083952 None:intergenic 35.0%
ACATAAAAGTTTGACAGCTG+TGG + chr4.2:92084272-92084291 None:intergenic 35.0%
AGTCCAAAATTGGATTTGCA+AGG - chr4.2:92084705-92084724 MS.gene053174:CDS 35.0%
ATAGAGGTTATTGCTCAAAG+AGG - chr4.2:92083511-92083530 MS.gene053174:CDS 35.0%
ATGACATACAAGGATCACAT+TGG + chr4.2:92083779-92083798 None:intergenic 35.0%
ATGACTGTGATAATCGATAC+CGG - chr4.2:92083735-92083754 MS.gene053174:CDS 35.0%
ATTATCAGCAAAGGAATCAG+AGG - chr4.2:92084663-92084682 MS.gene053174:CDS 35.0%
CAAACCAATACTACATTTGG+AGG - chr4.2:92084125-92084144 MS.gene053174:intron 35.0%
CTACATTGTGACAATAGGAT+TGG - chr4.2:92083701-92083720 MS.gene053174:CDS 35.0%
CTGAAATACCTCCAAAACTA+AGG + chr4.2:92084004-92084023 None:intergenic 35.0%
GAACAATGTTGATCTGAATG+TGG - chr4.2:92084544-92084563 MS.gene053174:intron 35.0%
GACAGATAAGAAACCAATGA+TGG + chr4.2:92083072-92083091 None:intergenic 35.0%
GATACATGTTTCAATCTGAC+TGG - chr4.2:92084479-92084498 MS.gene053174:intron 35.0%
GCTATACAAGATACAAGCTT+TGG - chr4.2:92084326-92084345 MS.gene053174:intron 35.0%
GTAACCTTACCTTTGAATCA+GGG + chr4.2:92083128-92083147 None:intergenic 35.0%
GTCCAAAATTGGATTTGCAA+GGG - chr4.2:92084706-92084725 MS.gene053174:CDS 35.0%
TACCAGAAGCTAATGGAATT+TGG + chr4.2:92083662-92083681 None:intergenic 35.0%
TATAGGAAGAGGAGTTAGAA+GGG + chr4.2:92083830-92083849 None:intergenic 35.0%
TCAAAGTGCAAATGTTGCAA+AGG - chr4.2:92082845-92082864 MS.gene053174:CDS 35.0%
TCATTGGGAATTATCAGCAA+AGG - chr4.2:92084654-92084673 MS.gene053174:CDS 35.0%
TCTTCCTAATCCCATTATAC+CGG + chr4.2:92084084-92084103 None:intergenic 35.0%
TGCTAAACTCACTTGATTCT+GGG + chr4.2:92082903-92082922 None:intergenic 35.0%
TGCTATTATCCTGGAAATGA+AGG - chr4.2:92083488-92083507 MS.gene053174:CDS 35.0%
TGTAACCTTACCTTTGAATC+AGG + chr4.2:92083129-92083148 None:intergenic 35.0%
TGTTTACCAACAACAGATAG+TGG - chr4.2:92084161-92084180 MS.gene053174:intron 35.0%
TTATAGGAAGAGGAGTTAGA+AGG + chr4.2:92083831-92083850 None:intergenic 35.0%
TTATCAGCAAAGGAATCAGA+GGG - chr4.2:92084664-92084683 MS.gene053174:CDS 35.0%
TTGCAAAGGAACCATCAATT+TGG - chr4.2:92082859-92082878 MS.gene053174:CDS 35.0%
TTGCTGATAATTCCCAATGA+TGG + chr4.2:92084654-92084673 None:intergenic 35.0%
! ATCCAAATTCCATTAGCTTC+TGG - chr4.2:92083657-92083676 MS.gene053174:CDS 35.0%
! GAACCATCAATTTGGTTCAA+AGG - chr4.2:92082867-92082886 MS.gene053174:CDS 35.0%
! TTCCCTTGCAAATCCAATTT+TGG + chr4.2:92084711-92084730 None:intergenic 35.0%
! TTTTATGTACTCAACCTCAC+CGG - chr4.2:92084284-92084303 MS.gene053174:intron 35.0%
!!! AGTTTGTTTTTGGTTGTGGT+AGG - chr4.2:92084030-92084049 MS.gene053174:intron 35.0%
AACCTCTATCCTTCATTTCC+AGG + chr4.2:92083500-92083519 None:intergenic 40.0%
ACCATACTGGTGTAAGCAAT+TGG + chr4.2:92084242-92084261 None:intergenic 40.0%
AGTTATAGGTAACGAGTCGT+CGG - chr4.2:92084199-92084218 MS.gene053174:intron 40.0%
ATACCGGAAGTGACTTAACA+TGG - chr4.2:92083751-92083770 MS.gene053174:CDS 40.0%
ATCCTGGAAATGAAGGATAG+AGG - chr4.2:92083495-92083514 MS.gene053174:CDS 40.0%
CTGCTAAACTCACTTGATTC+TGG + chr4.2:92082904-92082923 None:intergenic 40.0%
GAAAATGACATGGCCATCAT+TGG - chr4.2:92084638-92084657 MS.gene053174:CDS 40.0%
GAATAGCAACCCTGATTCAA+AGG - chr4.2:92083116-92083135 MS.gene053174:CDS 40.0%
GAGTTAGAAGGGTTGAAAAC+AGG + chr4.2:92083819-92083838 None:intergenic 40.0%
GATGCCAAACAGTCCAAAAT+TGG - chr4.2:92084695-92084714 MS.gene053174:CDS 40.0%
TAAACTCACTTGATTCTGGG+AGG + chr4.2:92082900-92082919 None:intergenic 40.0%
TACCGGAAGTGACTTAACAT+GGG - chr4.2:92083752-92083771 MS.gene053174:CDS 40.0%
TCATTTACTGATGGAGAGCT+AGG - chr4.2:92083969-92083988 MS.gene053174:CDS 40.0%
TCCAATTGCTTACACCAGTA+TGG - chr4.2:92084238-92084257 MS.gene053174:intron 40.0%
TTTCAATCTGACTGGGATTG+AGG - chr4.2:92084487-92084506 MS.gene053174:intron 40.0%
! CAAGATACAAGCTTTGGCAA+CGG - chr4.2:92084332-92084351 MS.gene053174:intron 40.0%
! GTATCCAAAATTGAAAGCGC+TGG + chr4.2:92084464-92084483 None:intergenic 40.0%
! GTTTCCGGTATAATGGGATT+AGG - chr4.2:92084077-92084096 MS.gene053174:intron 40.0%
!! CATTCTAATTGATTCGGGGA+CGG - chr4.2:92084358-92084377 MS.gene053174:intron 40.0%
!! GCTTCTGGTTCGTTAGTTAT+AGG - chr4.2:92084185-92084204 MS.gene053174:intron 40.0%
!! GGTGATGGATCATTTACTGA+TGG - chr4.2:92083960-92083979 MS.gene053174:CDS 40.0%
!! GGTGTTGAACACCTTAGTTT+TGG - chr4.2:92083990-92084009 MS.gene053174:CDS 40.0%
!!! GTTGAACACCTTAGTTTTGG+AGG - chr4.2:92083993-92084012 MS.gene053174:CDS 40.0%
CGGCGGCATTCTAATTGATT+CGG - chr4.2:92084352-92084371 MS.gene053174:intron 45.0%
CTGTGGATTCGAAACCATAC+TGG + chr4.2:92084255-92084274 None:intergenic 45.0%
GAAGCTCCACTATCTGTTGT+TGG + chr4.2:92084170-92084189 None:intergenic 45.0%
GACCCATGTTAAGTCACTTC+CGG + chr4.2:92083757-92083776 None:intergenic 45.0%
GATCTGAATGTGGATGCAGT+TGG - chr4.2:92084554-92084573 MS.gene053174:intron 45.0%
GCAAAACAGGATTCGAGCAA+AGG - chr4.2:92083599-92083618 MS.gene053174:CDS 45.0%
GCAACCCTGATTCAAAGGTA+AGG - chr4.2:92083121-92083140 MS.gene053174:CDS 45.0%
GCGTTCGTTCAATGCAAAAC+AGG - chr4.2:92083586-92083605 MS.gene053174:CDS 45.0%
GGTTGTGGTAGGAACAACAA+AGG - chr4.2:92084041-92084060 MS.gene053174:intron 45.0%
GGTTTATTTGGCGGAGTTTC+CGG - chr4.2:92084062-92084081 MS.gene053174:intron 45.0%
! GGCGGCATTCTAATTGATTC+GGG - chr4.2:92084353-92084372 MS.gene053174:intron 45.0%
! TGCACCAGCGCTTTCAATTT+TGG - chr4.2:92084457-92084476 MS.gene053174:intron 45.0%
!! ACAACAGATAGTGGAGCTTC+TGG - chr4.2:92084170-92084189 MS.gene053174:intron 45.0%
!! GCGGCATTCTAATTGATTCG+GGG - chr4.2:92084354-92084373 MS.gene053174:intron 45.0%
!! GGAGAAAGGTGCTATTATCC+TGG - chr4.2:92083479-92083498 MS.gene053174:CDS 45.0%
AACCTCACCGGCATAGATGT+TGG - chr4.2:92084296-92084315 MS.gene053174:intron 50.0%
AGGATTCGAGCAAAGGTCAC+TGG - chr4.2:92083606-92083625 MS.gene053174:CDS 50.0%
CACACCACCAACATCTATGC+CGG + chr4.2:92084306-92084325 None:intergenic 50.0%
CGCTCAAGCTGGCGAAAAAA+AGG + chr4.2:92083217-92083236 None:intergenic 50.0%
GGCGGAGTTTCCGGTATAAT+GGG - chr4.2:92084071-92084090 MS.gene053174:intron 50.0%
TGGCGGAGTTTCCGGTATAA+TGG - chr4.2:92084070-92084089 MS.gene053174:intron 50.0%
! GATACAAGCTTTGGCAACGG+CGG - chr4.2:92084335-92084354 MS.gene053174:intron 50.0%
!! ATTGAAAGCGCTGGTGCAGT+AGG + chr4.2:92084455-92084474 None:intergenic 50.0%
!! TTGAAAGCGCTGGTGCAGTA+GGG + chr4.2:92084454-92084473 None:intergenic 50.0%
CACCAACATCTATGCCGGTG+AGG + chr4.2:92084301-92084320 None:intergenic 55.0%
CTCACCGGCATAGATGTTGG+TGG - chr4.2:92084299-92084318 MS.gene053174:intron 55.0%
!! CGGCATAGATGTTGGTGGTG+TGG - chr4.2:92084304-92084323 MS.gene053174:intron 55.0%
AGTGGGCAGTTCGCTCAAGC+TGG + chr4.2:92083228-92083247 None:intergenic 60.0%
GGGGACGGTGATCACGAGAC+TGG - chr4.2:92084373-92084392 MS.gene053174:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 92082745 92084748 92082745 ID=MS.gene053174
chr4.2 mRNA 92082745 92084748 92082745 ID=MS.gene053174.t1;Parent=MS.gene053174
chr4.2 exon 92084583 92084748 92084583 ID=MS.gene053174.t1.exon1;Parent=MS.gene053174.t1
chr4.2 CDS 92084583 92084748 92084583 ID=cds.MS.gene053174.t1;Parent=MS.gene053174.t1
chr4.2 exon 92082745 92084018 92082745 ID=MS.gene053174.t1.exon2;Parent=MS.gene053174.t1
chr4.2 CDS 92082745 92084018 92082745 ID=cds.MS.gene053174.t1;Parent=MS.gene053174.t1
Gene Sequence

>MS.gene053174

ATGGCTTTCAACATAGCTACTATGTTGCCATTTTTTCTTTCTTTTGTTTTTCTTTACTTTATCATTGCAAATGGGGGTTGTGAACTTGAAGAGAAGATGTTCAAAGTGCAAATGTTGCAAAGGAACCATCAATTTGGTTCAAAGGGTTGCATCCTCCCAGAATCAAGTGAGTTTAGCAGAGAAAAAAAATGTGATTTTTTATGGACTTTGTTTATTTATTTTTTTTCAAATTTCACATTGGATCTCTTAATATTAAATCAAAAGTTCTTTCCTTTTTACTGTTATAAGAATCTAAGAACTGTTTTTTCCCTTTATAGAAAACACCCATCATTGGTTTCTTATCTGTCTTTCAAAGTCTTTGTTAGAATTTAGAATAGCAACCCTGATTCAAAGGTAAGGTTACATATATGAAAAATGCAAACAAAGAACACGCGATATTACAAGTTCGGTCAATTGTGTCTGCGTCGTACCTTTTTTTCGCCAGCTTGAGCGAACTGCCCACTTATCAGTAAACTATGAGTGATCCCCGAAAGTATTAAAAGAAGATATTGACTTGTTTTGACAAAGCATTTTGACTATATATTTATTTAGATTGCATTGTGTTTTGTGCAATAGATTGTGTTGCAAATTTCCATTTTAAATCTCTAATGTTGTATCAGTTCATAAGTGCTATTATCTTGGAAATGAGAAAGGTGCTATTAATCTGAATTCTTTGAATCTGAATTTTTAGGAAAGGAGAAAGGTGCTATTATCCTGGAAATGAAGGATAGAGGTTATTGCTCAAAGAGGAAAATTAATTGGAACAGAAAGCTTCAGAAACAGTTAATATTTGATGATCTTCGCGTTCGTTCAATGCAAAACAGGATTCGAGCAAAGGTCACTGGTCATAATAGTTCAGAACAATCTTCAGAAATCCAAATTCCATTAGCTTCTGGTATAAATTTGGAGACTTTAAACTACATTGTGACAATAGGATTGGGTAATCAGAACATGACTGTGATAATCGATACCGGAAGTGACTTAACATGGGTCCAATGTGATCCTTGTATGTCATGTTATAGTCAACAAGGACCTGTTTTCAACCCTTCTAACTCCTCTTCCTATAACTCATTACTATGCAATTCATCAACATGCCAAAATCTTCAATTTACTACAGGAAATACAGAAGCATGTGAAAGTAATAATCCATCTAGTTGTAACTACACTGTTAATTATGGTGATGGATCATTTACTGATGGAGAGCTAGGTGTTGAACACCTTAGTTTTGGAGGTATTTCAGTTAGTAAGTTTGTTTTTGGTTGTGGTAGGAACAACAAAGGTTTATTTGGCGGAGTTTCCGGTATAATGGGATTAGGAAGAAGTAACCTATCAATGATATCTCAAACCAATACTACATTTGGAGGAGTTTTCTCATACTGTTTACCAACAACAGATAGTGGAGCTTCTGGTTCGTTAGTTATAGGTAACGAGTCGTCGGTTTTCAAGAATCTTACTCCAATTGCTTACACCAGTATGGTTTCGAATCCACAGCTGTCAAACTTTTATGTACTCAACCTCACCGGCATAGATGTTGGTGGTGTGGCTATACAAGATACAAGCTTTGGCAACGGCGGCATTCTAATTGATTCGGGGACGGTGATCACGAGACTGGCTCCATCACTCTACAATGCTTTAAAGGCAGAGTTTTTGAAACAGTTTTCTGGTTACCCTACTGCACCAGCGCTTTCAATTTTGGATACATGTTTCAATCTGACTGGGATTGAGGAAGTTAGCATACCTACCTTAAGTATGCATTTTGAGAACAATGTTGATCTGAATGTGGATGCAGTTGGTATATTGTATATGCCAAAAGATGTTTCACAAGTTTGTTTGGCAGTTGCAAGTCTTTCTGATGAAAATGACATGGCCATCATTGGGAATTATCAGCAAAGGAATCAGAGGGTAATATATGATGCCAAACAGTCCAAAATTGGATTTGCAAGGGAAGACTGCAGTTTCATTTGA

Protein sequence

>MS.gene053174.t1

MAFNIATMLPFFLSFVFLYFIIANGGCELEEKMFKVQMLQRNHQFGSKGCILPESRKEKGAIILEMKDRGYCSKRKINWNRKLQKQLIFDDLRVRSMQNRIRAKVTGHNSSEQSSEIQIPLASGINLETLNYIVTIGLGNQNMTVIIDTGSDLTWVQCDPCMSCYSQQGPVFNPSNSSSYNSLLCNSSTCQNLQFTTGNTEACESNNPSSCNYTVNYGDGSFTDGELGVEHLSFGGISVSKFVFGCGRNNKGLFGGVSGIMGLGRSNLSMISQTNTTFGGVFSYCLPTTDSGASGSLVIGNESSVFKNLTPIAYTSMVSNPQLSNFYVLNLTGIDVGGVAIQDTSFGNGGILIDSGTVITRLAPSLYNALKAEFLKQFSGYPTAPALSILDTCFNLTGIEEVSIPTLSMHFENNVDLNVDAVGILYMPKDVSQVCLAVASLSDENDMAIIGNYQQRNQRVIYDAKQSKIGFAREDCSFI