Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07692.t1 | XP_003606273.1 | 99.4 | 542 | 3 | 0 | 1 | 542 | 1 | 542 | 7.6e-309 | 1068.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07692.t1 | Q9FNI7 | 79.2 | 539 | 98 | 3 | 6 | 542 | 6 | 532 | 1.7e-248 | 859.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07692.t1 | G7JM38 | 99.4 | 542 | 3 | 0 | 1 | 542 | 1 | 542 | 5.5e-309 | 1068.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051885 | MS.gene07692 | 0.808893 | 2.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07692.t1 | MTR_4g055520 | 99.446 | 542 | 3 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1121 |
| MS.gene07692.t1 | MTR_4g055520 | 99.594 | 493 | 2 | 0 | 1 | 493 | 1 | 493 | 0.0 | 1021 |
| MS.gene07692.t1 | MTR_4g055520 | 99.309 | 434 | 3 | 0 | 109 | 542 | 29 | 462 | 0.0 | 901 |
| MS.gene07692.t1 | MTR_4g055520 | 88.571 | 35 | 4 | 0 | 1 | 35 | 1 | 35 | 1.27e-11 | 67.4 |
| MS.gene07692.t1 | MTR_7g103590 | 67.228 | 534 | 161 | 3 | 10 | 542 | 9 | 529 | 0.0 | 785 |
| MS.gene07692.t1 | MTR_1g061510 | 67.115 | 520 | 158 | 1 | 23 | 542 | 14 | 520 | 0.0 | 764 |
| MS.gene07692.t1 | MTR_1g492700 | 67.864 | 529 | 156 | 3 | 15 | 542 | 12 | 527 | 0.0 | 747 |
| MS.gene07692.t1 | MTR_1g061270 | 63.158 | 532 | 181 | 3 | 12 | 542 | 2 | 519 | 0.0 | 733 |
| MS.gene07692.t1 | MTR_1g061340 | 62.970 | 532 | 183 | 3 | 12 | 542 | 2 | 520 | 0.0 | 731 |
| MS.gene07692.t1 | MTR_1g061280 | 62.030 | 532 | 188 | 2 | 12 | 542 | 2 | 520 | 0.0 | 730 |
| MS.gene07692.t1 | MTR_7g101950 | 55.351 | 542 | 224 | 3 | 1 | 542 | 4 | 527 | 0.0 | 647 |
| MS.gene07692.t1 | MTR_4g006010 | 46.453 | 437 | 222 | 5 | 64 | 494 | 202 | 632 | 5.82e-138 | 416 |
| MS.gene07692.t1 | MTR_6g007807 | 43.764 | 457 | 241 | 5 | 26 | 475 | 138 | 585 | 8.01e-138 | 414 |
| MS.gene07692.t1 | MTR_3g109040 | 40.782 | 537 | 285 | 7 | 28 | 539 | 144 | 672 | 3.37e-134 | 405 |
| MS.gene07692.t1 | MTR_3g109040 | 40.782 | 537 | 285 | 7 | 28 | 539 | 155 | 683 | 4.24e-134 | 405 |
| MS.gene07692.t1 | MTR_3g103500 | 45.853 | 434 | 222 | 4 | 33 | 463 | 180 | 603 | 4.52e-134 | 405 |
| MS.gene07692.t1 | MTR_8g012320 | 38.983 | 531 | 304 | 3 | 28 | 542 | 175 | 701 | 3.77e-127 | 388 |
| MS.gene07692.t1 | MTR_3g103500 | 48.889 | 315 | 155 | 2 | 33 | 347 | 180 | 488 | 4.39e-100 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07692.t1 | AT5G22740 | 79.074 | 540 | 99 | 3 | 5 | 542 | 5 | 532 | 0.0 | 887 |
| MS.gene07692.t1 | AT5G03760 | 68.914 | 534 | 152 | 4 | 10 | 542 | 10 | 530 | 0.0 | 784 |
| MS.gene07692.t1 | AT1G23480 | 60.795 | 528 | 193 | 3 | 16 | 542 | 39 | 553 | 0.0 | 697 |
| MS.gene07692.t1 | AT1G23480 | 60.795 | 528 | 193 | 3 | 16 | 542 | 39 | 553 | 0.0 | 697 |
| MS.gene07692.t1 | AT1G23480 | 63.158 | 494 | 168 | 3 | 50 | 542 | 1 | 481 | 0.0 | 684 |
| MS.gene07692.t1 | AT4G13410 | 57.547 | 530 | 206 | 3 | 12 | 540 | 26 | 537 | 0.0 | 677 |
| MS.gene07692.t1 | AT5G16190 | 59.690 | 516 | 192 | 2 | 26 | 540 | 4 | 504 | 0.0 | 658 |
| MS.gene07692.t1 | AT2G35650 | 57.143 | 511 | 203 | 2 | 19 | 529 | 42 | 536 | 0.0 | 649 |
| MS.gene07692.t1 | AT1G24070 | 57.564 | 509 | 202 | 2 | 32 | 540 | 58 | 552 | 0.0 | 642 |
| MS.gene07692.t1 | AT5G16190 | 56.102 | 549 | 192 | 3 | 26 | 540 | 4 | 537 | 0.0 | 641 |
| MS.gene07692.t1 | AT2G35650 | 58.958 | 480 | 181 | 2 | 50 | 529 | 1 | 464 | 0.0 | 631 |
| MS.gene07692.t1 | AT2G35650 | 58.958 | 480 | 181 | 2 | 50 | 529 | 1 | 464 | 0.0 | 631 |
| MS.gene07692.t1 | AT5G16190 | 64.612 | 438 | 155 | 0 | 26 | 463 | 4 | 441 | 0.0 | 618 |
| MS.gene07692.t1 | AT5G16190 | 61.572 | 458 | 160 | 2 | 84 | 540 | 1 | 443 | 0.0 | 610 |
| MS.gene07692.t1 | AT3G56000 | 54.902 | 510 | 210 | 5 | 35 | 539 | 29 | 523 | 0.0 | 593 |
| MS.gene07692.t1 | AT4G16590 | 51.737 | 518 | 202 | 3 | 23 | 540 | 51 | 520 | 0.0 | 574 |
| MS.gene07692.t1 | AT1G23480 | 63.840 | 401 | 132 | 2 | 142 | 542 | 21 | 408 | 0.0 | 559 |
| MS.gene07692.t1 | AT4G13410 | 60.406 | 394 | 138 | 2 | 147 | 540 | 1 | 376 | 0.0 | 531 |
| MS.gene07692.t1 | AT2G35650 | 59.432 | 387 | 141 | 2 | 143 | 529 | 8 | 378 | 4.41e-179 | 510 |
| MS.gene07692.t1 | AT4G13410 | 59.673 | 367 | 140 | 2 | 12 | 377 | 26 | 385 | 4.99e-169 | 484 |
| MS.gene07692.t1 | AT1G24070 | 60.393 | 356 | 129 | 3 | 32 | 387 | 58 | 401 | 4.96e-160 | 462 |
| MS.gene07692.t1 | AT4G31590 | 44.589 | 462 | 246 | 5 | 6 | 463 | 138 | 593 | 7.42e-142 | 426 |
| MS.gene07692.t1 | AT3G28180 | 46.485 | 441 | 224 | 4 | 26 | 463 | 134 | 565 | 4.42e-141 | 423 |
| MS.gene07692.t1 | AT3G07330 | 40.755 | 530 | 298 | 2 | 28 | 542 | 153 | 681 | 1.41e-140 | 422 |
| MS.gene07692.t1 | AT3G07330 | 40.755 | 530 | 298 | 2 | 28 | 542 | 153 | 681 | 1.41e-140 | 422 |
| MS.gene07692.t1 | AT2G24630 | 39.459 | 555 | 309 | 8 | 6 | 539 | 138 | 686 | 4.43e-136 | 410 |
| MS.gene07692.t1 | AT2G24630 | 39.459 | 555 | 309 | 8 | 6 | 539 | 138 | 686 | 4.43e-136 | 410 |
| MS.gene07692.t1 | AT4G07960 | 40.684 | 526 | 286 | 7 | 33 | 542 | 183 | 698 | 1.26e-126 | 386 |
| MS.gene07692.t1 | AT4G07960 | 40.684 | 526 | 286 | 7 | 33 | 542 | 183 | 698 | 1.26e-126 | 386 |
Find 116 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACCTTTCCATAAATT+TGG | 0.095743 | 4.1:-42862628 | None:intergenic |
| CACCTCTTGTTTCTCTAATT+TGG | 0.108542 | 4.1:-42858968 | None:intergenic |
| CATATTCTAGCAAACCAATT+AGG | 0.190286 | 4.1:-42862479 | None:intergenic |
| GAAAACAAGATCCAAATTTA+TGG | 0.196456 | 4.1:+42862617 | MS.gene07692:CDS |
| CTGAGGTTCATGTTCCAATT+TGG | 0.199327 | 4.1:+42862217 | MS.gene07692:CDS |
| CATGAGCAGGCTTAATTTCT+TGG | 0.200959 | 4.1:+42863103 | MS.gene07692:intron |
| TTTCATGGAAAGAGTTTATA+TGG | 0.210110 | 4.1:+42857996 | MS.gene07692:CDS |
| CTAATTGGTTTGCTAGAATA+TGG | 0.211369 | 4.1:+42862480 | MS.gene07692:CDS |
| TGAGGTTCATGTTCCAATTT+GGG | 0.231288 | 4.1:+42862218 | MS.gene07692:CDS |
| CGTACCAAGGCAACCCTAAT+TGG | 0.238361 | 4.1:+42862465 | MS.gene07692:CDS |
| TTCCTTTACTTGCCCATCTT+TGG | 0.241277 | 4.1:-42858932 | None:intergenic |
| TCAGCTACTCATGCTTTCTT+TGG | 0.243047 | 4.1:+42861277 | MS.gene07692:CDS |
| GAGCGGCTTGTGGGCTTTCA+TGG | 0.247561 | 4.1:+42858307 | MS.gene07692:CDS |
| ACCTTCTCAATTGTAGGATT+TGG | 0.248263 | 4.1:+42863221 | MS.gene07692:CDS |
| TCGCTGTTCGAGCAAGTCTT+AGG | 0.257915 | 4.1:+42861578 | MS.gene07692:CDS |
| ATGCAGGGACGGCCGGTATT+TGG | 0.263743 | 4.1:+42861491 | MS.gene07692:intron |
| CCTTGAACAAGAGCAATTTC+AGG | 0.303932 | 4.1:-42859128 | None:intergenic |
| GACTCTGGTATATAAACTTT+AGG | 0.307674 | 4.1:-42857850 | None:intergenic |
| CATGCTTTCTTTGGCTTCAA+TGG | 0.310696 | 4.1:+42861286 | MS.gene07692:CDS |
| CAAGTCAAATTAAGATGATA+TGG | 0.326108 | 4.1:+42857896 | MS.gene07692:CDS |
| CCTGAAATTGCTCTTGTTCA+AGG | 0.326116 | 4.1:+42859128 | MS.gene07692:CDS |
| TGCTAATCTGTTCCGCAAAA+TGG | 0.327429 | 4.1:+42861941 | MS.gene07692:CDS |
| TTTATTGTTGTTGTTGTTAA+CGG | 0.332004 | 4.1:-42862544 | None:intergenic |
| GTTCAAGGTCGTTGGAGATT+TGG | 0.339973 | 4.1:+42859143 | MS.gene07692:CDS |
| ACCTTAACCTTCTCAATTGT+AGG | 0.346965 | 4.1:+42863215 | MS.gene07692:CDS |
| ATATTCTAGCAAACCAATTA+GGG | 0.349265 | 4.1:-42862478 | None:intergenic |
| CAGAACAACAGTTGAAGATA+TGG | 0.365102 | 4.1:+42861552 | MS.gene07692:CDS |
| AAATGGCGATGGAGATTATA+AGG | 0.367253 | 4.1:+42861958 | MS.gene07692:CDS |
| AAGAATGCAAGAGATGTCTT+TGG | 0.370356 | 4.1:+42861222 | MS.gene07692:CDS |
| ATGTAAACAGCTCCCCAAAT+TGG | 0.378565 | 4.1:-42862231 | None:intergenic |
| ATTGTAGGATTTGGTTATGT+TGG | 0.379370 | 4.1:+42863230 | MS.gene07692:CDS |
| TCATACTTATAACGTTGTTC+AGG | 0.379898 | 4.1:-42858057 | None:intergenic |
| GTGTACAGAAAGTGAAGTTC+TGG | 0.382661 | 4.1:+42862088 | MS.gene07692:intron |
| TTCTACTGACCCTGTTGTTA+AGG | 0.383212 | 4.1:+42858365 | MS.gene07692:CDS |
| CGCTGTTCGAGCAAGTCTTA+GGG | 0.385066 | 4.1:+42861579 | MS.gene07692:CDS |
| CTGAAGGCTCTCAGAGTACT+TGG | 0.390561 | 4.1:-42861888 | None:intergenic |
| TCCTACAATTGAGAAGGTTA+AGG | 0.401066 | 4.1:-42863216 | None:intergenic |
| TTTCGATTGGAGCGGCTTGT+GGG | 0.405849 | 4.1:+42858298 | MS.gene07692:CDS |
| TTGAGAAGGTTAAGGTTTGA+AGG | 0.410807 | 4.1:-42863208 | None:intergenic |
| GGAATTTGAACAAGAACAAC+AGG | 0.417109 | 4.1:-42858120 | None:intergenic |
| ATGGCTCTTCTAAGAAAATC+AGG | 0.417142 | 4.1:-42859086 | None:intergenic |
| CAGTAGAATCATCAAGTACT+TGG | 0.417324 | 4.1:-42858350 | None:intergenic |
| CACAAGACCATCTGTGCTGC+TGG | 0.427142 | 4.1:-42861914 | None:intergenic |
| TTCACAGTTGAGCAAGAAGT+TGG | 0.434090 | 4.1:+42861253 | MS.gene07692:CDS |
| CAGGTTTATAAGGTTTCGAT+TGG | 0.436880 | 4.1:+42858285 | MS.gene07692:intron |
| AATGCAGCAAATGGTGGAAA+TGG | 0.437156 | 4.1:+42858905 | MS.gene07692:intron |
| CTTCTTGCTCAACTGTGAAA+TGG | 0.437858 | 4.1:-42861249 | None:intergenic |
| GTTTCGATTGGAGCGGCTTG+TGG | 0.451144 | 4.1:+42858297 | MS.gene07692:CDS |
| AAAGGATCCAATAGAACAAA+AGG | 0.455383 | 4.1:-42862419 | None:intergenic |
| TTGCTCTTGTTCAAGGTCGT+TGG | 0.464965 | 4.1:+42859135 | MS.gene07692:CDS |
| TAATTGGTTTGCTAGAATAT+GGG | 0.467443 | 4.1:+42862481 | MS.gene07692:CDS |
| AGGTTAAGGTTTGAAGGAAG+AGG | 0.467765 | 4.1:-42863202 | None:intergenic |
| TCAGGATTACCAACAAGAAA+AGG | 0.469315 | 4.1:-42859110 | None:intergenic |
| ACCTCTCTTTCATTGAACAT+TGG | 0.472020 | 4.1:-42858141 | None:intergenic |
| TTTGTACCTTGGAGACCTCC+AGG | 0.476674 | 4.1:+42861612 | MS.gene07692:CDS |
| TTCATGGAAAGAGTTTATAT+GGG | 0.483092 | 4.1:+42857997 | MS.gene07692:CDS |
| AATATGGGAGGGCTAATGAA+TGG | 0.486275 | 4.1:+42862496 | MS.gene07692:CDS |
| CTTCAAGATGATGAAGAACT+TGG | 0.491348 | 4.1:+42858084 | MS.gene07692:CDS |
| CAAACCAATTAGGGTTGCCT+TGG | 0.498332 | 4.1:-42862469 | None:intergenic |
| ATATGGGAGGGCTAATGAAT+GGG | 0.499596 | 4.1:+42862497 | MS.gene07692:CDS |
| AAGACATGACATTCTCGAAA+AGG | 0.512512 | 4.1:-42862437 | None:intergenic |
| AGCAGCAATTCTCCAAATAC+CGG | 0.519466 | 4.1:-42861503 | None:intergenic |
| TGTTTACATTTCATTAGCAA+TGG | 0.522412 | 4.1:+42857963 | MS.gene07692:CDS |
| AGGCTTAATTTCTTGGAGCT+AGG | 0.522894 | 4.1:+42863110 | MS.gene07692:intron |
| TGCCAAAGATGGGCAAGTAA+AGG | 0.533260 | 4.1:+42858930 | MS.gene07692:CDS |
| CAAGATGATGAAGAACTTGG+TGG | 0.538757 | 4.1:+42858087 | MS.gene07692:CDS |
| TTGTGGGCTTTCATGGCCGA+CGG | 0.540449 | 4.1:+42858314 | MS.gene07692:CDS |
| CAAATTGGAACATGAACCTC+AGG | 0.544374 | 4.1:-42862216 | None:intergenic |
| GAGCTACGATCTTGCGAACA+AGG | 0.545461 | 4.1:-42862140 | None:intergenic |
| AACCTGAATGCAGGGACGGC+CGG | 0.545969 | 4.1:+42861484 | MS.gene07692:intron |
| AAAGCAGGTGCATTGAAAGA+AGG | 0.546072 | 4.1:+42858996 | MS.gene07692:CDS |
| TGGAAATGGAATGCCAAAGA+TGG | 0.548465 | 4.1:+42858919 | MS.gene07692:CDS |
| AAGTCAAATTAAGATGATAT+GGG | 0.549081 | 4.1:+42857897 | MS.gene07692:CDS |
| TCAGATTCCAGCAGCACAGA+TGG | 0.549934 | 4.1:+42861907 | MS.gene07692:CDS |
| TTCGAGCAAGTCTTAGGGGA+TGG | 0.551876 | 4.1:+42861584 | MS.gene07692:CDS |
| CTATCAATGAAGCAGGAGGA+TGG | 0.553186 | 4.1:+42861524 | MS.gene07692:CDS |
| ATTGCTGCTATCAATGAAGC+AGG | 0.553711 | 4.1:+42861517 | MS.gene07692:CDS |
| TGAGTTGAGAATGGTGATGA+TGG | 0.557907 | 4.1:-42862259 | None:intergenic |
| AGTTCTTCATCATCTTGAAG+AGG | 0.559787 | 4.1:-42858081 | None:intergenic |
| CAAGATCCAAATTTATGGAA+AGG | 0.560045 | 4.1:+42862622 | MS.gene07692:CDS |
| CTCAGGAACCAAAATTGTGA+GGG | 0.566831 | 4.1:-42862199 | None:intergenic |
| GATTTACCTGGAGGTCTCCA+AGG | 0.568858 | 4.1:-42861618 | None:intergenic |
| ATTACCAACAAGAAAAGGAA+TGG | 0.571120 | 4.1:-42859105 | None:intergenic |
| TAGTTCACTTGAAATGACTC+TGG | 0.578254 | 4.1:-42857865 | None:intergenic |
| TCCAATGTTCAATGAAAGAG+AGG | 0.585758 | 4.1:+42858140 | MS.gene07692:CDS |
| TCTGTTCCGCAAAATGGCGA+TGG | 0.588949 | 4.1:+42861947 | MS.gene07692:CDS |
| ACCAAATCCTACAATTGAGA+AGG | 0.592924 | 4.1:-42863222 | None:intergenic |
| TTGGTTTGCTAGAATATGGG+AGG | 0.593945 | 4.1:+42862484 | MS.gene07692:CDS |
| CTTCTAAGAAAATCAGGAGG+AGG | 0.594412 | 4.1:-42859080 | None:intergenic |
| ACAAGAGGTGGATACAAAGC+AGG | 0.594663 | 4.1:+42858981 | MS.gene07692:CDS |
| TTGAGAATGGTGATGATGGA+AGG | 0.598628 | 4.1:-42862255 | None:intergenic |
| GAGGTTCATGTTCCAATTTG+GGG | 0.599098 | 4.1:+42862219 | MS.gene07692:CDS |
| GCTGTTCGAGCAAGTCTTAG+GGG | 0.606955 | 4.1:+42861580 | MS.gene07692:CDS |
| TGAATGAATGCAGCAAATGG+TGG | 0.612388 | 4.1:+42858899 | MS.gene07692:intron |
| TGTTCCGACTGAGTTGAGAA+TGG | 0.616682 | 4.1:-42862268 | None:intergenic |
| CAGCAGCACAGATGGTCTTG+TGG | 0.617433 | 4.1:+42861915 | MS.gene07692:CDS |
| ATCACCATTCTCAACTCAGT+CGG | 0.619321 | 4.1:+42862264 | MS.gene07692:CDS |
| TGGTTTGCTAGAATATGGGA+GGG | 0.620333 | 4.1:+42862485 | MS.gene07692:CDS |
| GGAAATGGAATGCCAAAGAT+GGG | 0.629673 | 4.1:+42858920 | MS.gene07692:CDS |
| TCGCAAGATCGTAGCTCACA+TGG | 0.630015 | 4.1:+42862146 | MS.gene07692:CDS |
| CAAATTAGAGAAACAAGAGG+TGG | 0.630612 | 4.1:+42858969 | MS.gene07692:CDS |
| CCTCAGGAACCAAAATTGTG+AGG | 0.640518 | 4.1:-42862200 | None:intergenic |
| GGATGCTATGACTATGTGCA+TGG | 0.646576 | 4.1:+42863158 | MS.gene07692:CDS |
| TTATAAGGTTTCGATTGGAG+CGG | 0.647679 | 4.1:+42858290 | MS.gene07692:CDS |
| TCTGTGCTGCTGGAATCTGA+AGG | 0.654297 | 4.1:-42861904 | None:intergenic |
| TACCAAATTAGAGAAACAAG+AGG | 0.669909 | 4.1:+42858966 | MS.gene07692:CDS |
| TTTGGAATACCTTAACAACA+GGG | 0.672446 | 4.1:-42858374 | None:intergenic |
| TCAGGAACCAAAATTGTGAG+GGG | 0.679056 | 4.1:-42862198 | None:intergenic |
| CAGGAACCAAAATTGTGAGG+GGG | 0.680810 | 4.1:-42862197 | None:intergenic |
| GCTGCTATCAATGAAGCAGG+AGG | 0.681209 | 4.1:+42861520 | MS.gene07692:CDS |
| GATGGAGATTATAAGGAACA+AGG | 0.689212 | 4.1:+42861965 | MS.gene07692:CDS |
| TGGATCACGAGTCGATCCGT+CGG | 0.693005 | 4.1:-42858330 | None:intergenic |
| CATGTCTTTACATCGTACCA+AGG | 0.699931 | 4.1:+42862452 | MS.gene07692:CDS |
| GCTCTTCTAAGAAAATCAGG+AGG | 0.701297 | 4.1:-42859083 | None:intergenic |
| TCAACTCAGTCGGAACACCA+AGG | 0.719213 | 4.1:+42862274 | MS.gene07692:CDS |
| TAAGACTTGCTCGAACAGCG+AGG | 0.744360 | 4.1:-42861576 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAATGAAAAAACA+TGG | - | chr4.1:42858594-42858613 | None:intergenic | 10.0% |
| !! | ATTCTATAATAATTCTAATT+TGG | - | chr4.1:42862914-42862933 | None:intergenic | 10.0% |
| !! | GTTAATATAAAATTAAAAAG+TGG | + | chr4.1:42859733-42859752 | MS.gene07692:intron | 10.0% |
| !! | TTCTATAATAATTCTAATTT+GGG | - | chr4.1:42862913-42862932 | None:intergenic | 10.0% |
| !!! | AAAATCTAAATTATCAATTT+TGG | - | chr4.1:42858786-42858805 | None:intergenic | 10.0% |
| !!! | AAATCTAAATTATCAATTTT+GGG | - | chr4.1:42858785-42858804 | None:intergenic | 10.0% |
| !!! | AATGATTTTTATAATCAAAA+CGG | - | chr4.1:42858756-42858775 | None:intergenic | 10.0% |
| !!! | ATTAAATTAAGAAATAGTTT+TGG | - | chr4.1:42860725-42860744 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTAATTAAAATGG+GGG | + | chr4.1:42858801-42858820 | MS.gene07692:intron | 10.0% |
| !!! | GATTTTTTTTAATTAAAATG+GGG | + | chr4.1:42858800-42858819 | MS.gene07692:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTCTGA+AGG | - | chr4.1:42860413-42860432 | None:intergenic | 10.0% |
| !! | AAAAAAAAGTTAACATGTTT+AGG | + | chr4.1:42860425-42860444 | MS.gene07692:intron | 15.0% |
| !! | AAAAAAAATAAAACTCTGTT+GGG | - | chr4.1:42858686-42858705 | None:intergenic | 15.0% |
| !! | AATGAACTCATAATATTATA+AGG | + | chr4.1:42862931-42862950 | MS.gene07692:intron | 15.0% |
| !! | AATTTAGCAAAAATATTATG+TGG | + | chr4.1:42859914-42859933 | MS.gene07692:intron | 15.0% |
| !! | ATTTAGCAAAAATATTATGT+GGG | + | chr4.1:42859915-42859934 | MS.gene07692:intron | 15.0% |
| !! | TAATAATCATTAATCATACT+TGG | + | chr4.1:42860753-42860772 | MS.gene07692:intron | 15.0% |
| !! | TCTTAAAATGACATTAAATT+TGG | - | chr4.1:42858571-42858590 | None:intergenic | 15.0% |
| !! | TTACTAAAAAAATTACACTA+AGG | - | chr4.1:42861125-42861144 | None:intergenic | 15.0% |
| !!! | AAAAATTTGACTTGAATTTT+TGG | - | chr4.1:42858395-42858414 | None:intergenic | 15.0% |
| !!! | AACTCTAATATTTTTTTTGA+AGG | - | chr4.1:42860004-42860023 | None:intergenic | 15.0% |
| !!! | ACTTTTTTACTTTTATGTTT+TGG | - | chr4.1:42861097-42861116 | None:intergenic | 15.0% |
| !!! | ATTTTAATGATGTTTTGTTT+TGG | + | chr4.1:42862060-42862079 | MS.gene07692:intron | 15.0% |
| !!! | GAAATTATGATTAAGTTTTT+TGG | - | chr4.1:42862027-42862046 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTGATATAATGT+TGG | + | chr4.1:42859207-42859226 | MS.gene07692:intron | 15.0% |
| !!! | TTTGGTAACTTTTTTTTTTA+CGG | + | chr4.1:42858211-42858230 | MS.gene07692:intron | 15.0% |
| !! | AAAAAAAGAAAATGGAACAA+GGG | + | chr4.1:42860475-42860494 | MS.gene07692:intron | 20.0% |
| !! | AACAATAAAAAAGACAAATC+TGG | + | chr4.1:42862558-42862577 | MS.gene07692:CDS | 20.0% |
| !! | AAGTCAAATTAAGATGATAT+GGG | + | chr4.1:42857897-42857916 | MS.gene07692:CDS | 20.0% |
| !! | ATAAAAATCATGTGTTTATG+TGG | + | chr4.1:42860923-42860942 | MS.gene07692:intron | 20.0% |
| !! | ATAATGTTACAAAAAAAACC+TGG | + | chr4.1:42859863-42859882 | MS.gene07692:intron | 20.0% |
| !! | CAATCTATCAAAATTAAACT+CGG | - | chr4.1:42859284-42859303 | None:intergenic | 20.0% |
| !! | GAAAAAAAATAAAACTCTGT+TGG | - | chr4.1:42858687-42858706 | None:intergenic | 20.0% |
| !! | TAAAAATCATGTGTTTATGT+GGG | + | chr4.1:42860924-42860943 | MS.gene07692:intron | 20.0% |
| !! | TAATGTTACAAAAAAAACCT+GGG | + | chr4.1:42859864-42859883 | MS.gene07692:intron | 20.0% |
| !! | TAGTAGAAAACTTTGATATT+TGG | - | chr4.1:42860525-42860544 | None:intergenic | 20.0% |
| !! | TTAATAATACTAAGTAGTAG+TGG | + | chr4.1:42860803-42860822 | MS.gene07692:intron | 20.0% |
| !! | TTCAAAAATGGTACAATTAA+TGG | - | chr4.1:42857937-42857956 | None:intergenic | 20.0% |
| !! | TTTAGCAAAAATATTATGTG+GGG | + | chr4.1:42859916-42859935 | MS.gene07692:intron | 20.0% |
| !!! | ATATTCTAAAATCTTCTGTA+AGG | - | chr4.1:42862856-42862875 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAGTATCATATT+AGG | + | chr4.1:42863039-42863058 | MS.gene07692:intron | 20.0% |
| !!! | GGTGTTAGTTTATTTTATTT+AGG | + | chr4.1:42860824-42860843 | MS.gene07692:intron | 20.0% |
| !!! | GTTTTTTATATTGATTGTGT+AGG | + | chr4.1:42859570-42859589 | MS.gene07692:intron | 20.0% |
| !!! | TAAATTATCAATTTTGGGAT+TGG | - | chr4.1:42858780-42858799 | None:intergenic | 20.0% |
| !!! | TAATGTTGTTTTTCTATTAC+AGG | + | chr4.1:42858266-42858285 | MS.gene07692:intron | 20.0% |
| !!! | TATGGGTTTTGTTATTATTT+TGG | + | chr4.1:42858014-42858033 | MS.gene07692:CDS | 20.0% |
| !!! | TGTTTTACTAATATTGAGAA+TGG | + | chr4.1:42861162-42861181 | MS.gene07692:intron | 20.0% |
| !!! | TTAACTTTAACTTTTTCACA+AGG | - | chr4.1:42861070-42861089 | None:intergenic | 20.0% |
| !!! | TTTATTGTTGTTGTTGTTAA+CGG | - | chr4.1:42862547-42862566 | None:intergenic | 20.0% |
| !!! | TTTTCTATTACAGGTTTATA+AGG | + | chr4.1:42858275-42858294 | MS.gene07692:intron | 20.0% |
| ! | AAGGTATAATCCAAATTCAA+TGG | - | chr4.1:42861747-42861766 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4.1:42860094-42860113 | None:intergenic | 25.0% |
| ! | AATAATAATATGTGTCAGTG+TGG | + | chr4.1:42860611-42860630 | MS.gene07692:intron | 25.0% |
| ! | ACATGTTTAGGAAAAGAAAA+TGG | + | chr4.1:42860437-42860456 | MS.gene07692:intron | 25.0% |
| ! | ACTCATTGTACATTGAAAAT+AGG | - | chr4.1:42858464-42858483 | None:intergenic | 25.0% |
| ! | ATAATAATATGTGTCAGTGT+GGG | + | chr4.1:42860612-42860631 | MS.gene07692:intron | 25.0% |
| ! | ATATTCTAGCAAACCAATTA+GGG | - | chr4.1:42862481-42862500 | None:intergenic | 25.0% |
| ! | ATCATTAATCATACTTGGTT+AGG | + | chr4.1:42860758-42860777 | MS.gene07692:intron | 25.0% |
| ! | ATCTATAATGCAGTTAACTT+AGG | - | chr4.1:42861650-42861669 | None:intergenic | 25.0% |
| ! | ATTAAAGGAATCTTGTAGTT+TGG | + | chr4.1:42862732-42862751 | MS.gene07692:intron | 25.0% |
| ! | ATTATGTATAGATCCAATGT+GGG | + | chr4.1:42860224-42860243 | MS.gene07692:intron | 25.0% |
| ! | ATTTGTCGATGAAAAACATA+AGG | - | chr4.1:42861326-42861345 | None:intergenic | 25.0% |
| ! | CAAAAAAAGAAAATGGAACA+AGG | + | chr4.1:42860474-42860493 | MS.gene07692:intron | 25.0% |
| ! | CAAAAAGAAAAAGTCATCTT+TGG | - | chr4.1:42860951-42860970 | None:intergenic | 25.0% |
| ! | CAAGTCAAATTAAGATGATA+TGG | + | chr4.1:42857896-42857915 | MS.gene07692:CDS | 25.0% |
| ! | CTCATTGTACATTGAAAATA+GGG | - | chr4.1:42858463-42858482 | None:intergenic | 25.0% |
| ! | GAAAACAAGATCCAAATTTA+TGG | + | chr4.1:42862617-42862636 | MS.gene07692:CDS | 25.0% |
| ! | TAAACACAAGCATTCAAAAA+TGG | - | chr4.1:42857949-42857968 | None:intergenic | 25.0% |
| ! | TATTATGTATAGATCCAATG+TGG | + | chr4.1:42860223-42860242 | MS.gene07692:intron | 25.0% |
| ! | TCCTTCAATCATGAAATTAT+TGG | - | chr4.1:42862758-42862777 | None:intergenic | 25.0% |
| ! | TGACATAAGAAATGAAAAGA+GGG | - | chr4.1:42860694-42860713 | None:intergenic | 25.0% |
| ! | TGTTTACATTTCATTAGCAA+TGG | + | chr4.1:42857963-42857982 | MS.gene07692:CDS | 25.0% |
| ! | TTCATGGAAAGAGTTTATAT+GGG | + | chr4.1:42857997-42858016 | MS.gene07692:CDS | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4.1:42860106-42860125 | MS.gene07692:intron | 25.0% |
| ! | TTTACCTTACCTAATGATAT+TGG | + | chr4.1:42861026-42861045 | MS.gene07692:intron | 25.0% |
| ! | TTTCATGGAAAGAGTTTATA+TGG | + | chr4.1:42857996-42858015 | MS.gene07692:CDS | 25.0% |
| !! | AATTTCTAGATTCATAGTGT+CGG | + | chr4.1:42859487-42859506 | MS.gene07692:intron | 25.0% |
| !! | CAAATTCTACATCTTCATTT+TGG | + | chr4.1:42862681-42862700 | MS.gene07692:intron | 25.0% |
| !! | CTTACTAATGATTCGTATTT+TGG | + | chr4.1:42861461-42861480 | MS.gene07692:intron | 25.0% |
| !! | CTTTTTCTTTTTGTACCTTT+TGG | + | chr4.1:42860958-42860977 | MS.gene07692:intron | 25.0% |
| !! | TAGGCTTGTAATTTTTGTTA+TGG | + | chr4.1:42863058-42863077 | MS.gene07692:intron | 25.0% |
| !! | TTTCTTTTGAACTTTGACAT+TGG | - | chr4.1:42862601-42862620 | None:intergenic | 25.0% |
| !! | TTTGTTCTTTTGGATTCTTT+TGG | + | chr4.1:42858193-42858212 | MS.gene07692:intron | 25.0% |
| !!! | ATGAATAGGTTATTTTGTCA+AGG | + | chr4.1:42859941-42859960 | MS.gene07692:intron | 25.0% |
| !!! | GTTATTTTGTTGTTTCTAGT+AGG | + | chr4.1:42862803-42862822 | MS.gene07692:intron | 25.0% |
| !!! | GTTCTTTGTTTTTGTTCTTT+TGG | + | chr4.1:42858183-42858202 | MS.gene07692:intron | 25.0% |
| !!! | TAATTGGTTTGCTAGAATAT+GGG | + | chr4.1:42862481-42862500 | MS.gene07692:CDS | 25.0% |
| !!! | TTATTTTGGTTAAGCTCTTT+TGG | + | chr4.1:42858028-42858047 | MS.gene07692:CDS | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4.1:42860093-42860112 | MS.gene07692:intron | 25.0% |
| !!! | TTTAACTTTTTCACAAGGTA+AGG | - | chr4.1:42861065-42861084 | None:intergenic | 25.0% |
| AAAGGATCCAATAGAACAAA+AGG | - | chr4.1:42862422-42862441 | None:intergenic | 30.0% | |
| AAATGGAACAAGGGTAAAAA+TGG | + | chr4.1:42860484-42860503 | MS.gene07692:intron | 30.0% | |
| AACTGACCTTTCCATAAATT+TGG | - | chr4.1:42862631-42862650 | None:intergenic | 30.0% | |
| AAGAAAATGCAGATCCTTAT+TGG | - | chr4.1:42858439-42858458 | None:intergenic | 30.0% | |
| AAGTCAAACAAGGACAAAAT+TGG | - | chr4.1:42859617-42859636 | None:intergenic | 30.0% | |
| AATGCATAATTCCATTACAG+TGG | - | chr4.1:42860988-42861007 | None:intergenic | 30.0% | |
| AATGGAACAAGGGTAAAAAT+GGG | + | chr4.1:42860485-42860504 | MS.gene07692:intron | 30.0% | |
| AATTCTTCAATCACCCAATA+AGG | + | chr4.1:42858422-42858441 | MS.gene07692:intron | 30.0% | |
| AGAAAATGCAGATCCTTATT+GGG | - | chr4.1:42858438-42858457 | None:intergenic | 30.0% | |
| AGGAAAAGAAAATGGAACAA+GGG | + | chr4.1:42860445-42860464 | MS.gene07692:intron | 30.0% | |
| ATGACCAATATCATTAGGTA+AGG | - | chr4.1:42861033-42861052 | None:intergenic | 30.0% | |
| ATTACCAACAAGAAAAGGAA+TGG | - | chr4.1:42859108-42859127 | None:intergenic | 30.0% | |
| CAAGATCCAAATTTATGGAA+AGG | + | chr4.1:42862622-42862641 | MS.gene07692:CDS | 30.0% | |
| CATATTCTAGCAAACCAATT+AGG | - | chr4.1:42862482-42862501 | None:intergenic | 30.0% | |
| CATCGACAAATGTTAGTAAT+TGG | + | chr4.1:42861335-42861354 | MS.gene07692:intron | 30.0% | |
| CTTAGGATATAAGATTTACC+TGG | - | chr4.1:42861633-42861652 | None:intergenic | 30.0% | |
| GACTCTGGTATATAAACTTT+AGG | - | chr4.1:42857853-42857872 | None:intergenic | 30.0% | |
| GCCAATAATTTCATGATTGA+AGG | + | chr4.1:42862754-42862773 | MS.gene07692:intron | 30.0% | |
| GTGAACTATAGTACAAAACT+AGG | - | chr4.1:42863010-42863029 | None:intergenic | 30.0% | |
| GTGACATAAGAAATGAAAAG+AGG | - | chr4.1:42860695-42860714 | None:intergenic | 30.0% | |
| GTTGGGTCAAAAAAAGAAAA+TGG | + | chr4.1:42860467-42860486 | MS.gene07692:intron | 30.0% | |
| GTTTGCCTATAACAAGAAAA+TGG | - | chr4.1:42861859-42861878 | None:intergenic | 30.0% | |
| TACCAAATTAGAGAAACAAG+AGG | + | chr4.1:42858966-42858985 | MS.gene07692:CDS | 30.0% | |
| TAGGAAAAGAAAATGGAACA+AGG | + | chr4.1:42860444-42860463 | MS.gene07692:intron | 30.0% | |
| TATCATATCCATCTTTAGTG+CGG | + | chr4.1:42862319-42862338 | MS.gene07692:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4.1:42860068-42860087 | None:intergenic | 30.0% | |
| TCATACTTATAACGTTGTTC+AGG | - | chr4.1:42858060-42858079 | None:intergenic | 30.0% | |
| TGGATTATACCTTAATTCAG+CGG | + | chr4.1:42861754-42861773 | MS.gene07692:intron | 30.0% | |
| ! | AAGCTTTTACAAAATTACCG+TGG | + | chr4.1:42858532-42858551 | MS.gene07692:intron | 30.0% |
| ! | ATTGTAGGATTTGGTTATGT+TGG | + | chr4.1:42863230-42863249 | MS.gene07692:CDS | 30.0% |
| ! | CAATTCACCTTTTGTTCTAT+TGG | + | chr4.1:42862412-42862431 | MS.gene07692:CDS | 30.0% |
| ! | TCTTGATGACCAATATCATT+AGG | - | chr4.1:42861038-42861057 | None:intergenic | 30.0% |
| ! | TGATTTGAGTTCCAAACAAA+GGG | + | chr4.1:42862975-42862994 | MS.gene07692:intron | 30.0% |
| ! | TTCTTTTTGTACCTTTTGGT+TGG | + | chr4.1:42860962-42860981 | MS.gene07692:intron | 30.0% |
| ! | TTTGGAATACCTTAACAACA+GGG | - | chr4.1:42858377-42858396 | None:intergenic | 30.0% |
| ! | TTTTCTACTAGTTCCATCAA+AGG | + | chr4.1:42860535-42860554 | MS.gene07692:intron | 30.0% |
| !! | AATTCTAAAGTATGAGTCGT+TGG | - | chr4.1:42859704-42859723 | None:intergenic | 30.0% |
| !! | AATTTTGTCCTTGTTTGACT+TGG | + | chr4.1:42859616-42859635 | MS.gene07692:intron | 30.0% |
| !! | ATTTTGTCCTTGTTTGACTT+GGG | + | chr4.1:42859617-42859636 | MS.gene07692:intron | 30.0% |
| !! | CTAATTGGTTTGCTAGAATA+TGG | + | chr4.1:42862480-42862499 | MS.gene07692:CDS | 30.0% |
| !! | GTGGTTTTGCAGTATATTTA+GGG | + | chr4.1:42860568-42860587 | MS.gene07692:intron | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr4.1:42860178-42860197 | None:intergenic | 30.0% |
| !!! | AACTTTGACATTGGTTTTCT+TGG | - | chr4.1:42862592-42862611 | None:intergenic | 30.0% |
| !!! | TGTTGCCATTTTCTTGTTAT+AGG | + | chr4.1:42861851-42861870 | MS.gene07692:intron | 30.0% |
| !!! | TTTTGGAATACCTTAACAAC+AGG | - | chr4.1:42858378-42858397 | None:intergenic | 30.0% |
| AAAACAAACCCTTCAATCAC+GGG | + | chr4.1:42859669-42859688 | MS.gene07692:intron | 35.0% | |
| AAAACAATGGAGAGAGGAAA+AGG | + | chr4.1:42860119-42860138 | MS.gene07692:intron | 35.0% | |
| AAAGAAAATGGAACAAGGGT+TGG | + | chr4.1:42860449-42860468 | MS.gene07692:intron | 35.0% | |
| AAATATACTGCAAAACCACG+TGG | - | chr4.1:42860567-42860586 | None:intergenic | 35.0% | |
| AAATATCGACCGCTGAATTA+AGG | - | chr4.1:42861766-42861785 | None:intergenic | 35.0% | |
| AAATGGCGATGGAGATTATA+AGG | + | chr4.1:42861958-42861977 | MS.gene07692:CDS | 35.0% | |
| AAGAAAATGGAACAAGGGTT+GGG | + | chr4.1:42860450-42860469 | MS.gene07692:intron | 35.0% | |
| AAGAATGCAAGAGATGTCTT+TGG | + | chr4.1:42861222-42861241 | MS.gene07692:CDS | 35.0% | |
| AAGACATGACATTCTCGAAA+AGG | - | chr4.1:42862440-42862459 | None:intergenic | 35.0% | |
| AAGGTAAAGTACACTATCAC+AGG | - | chr4.1:42861014-42861033 | None:intergenic | 35.0% | |
| AATATACTGCAAAACCACGT+GGG | - | chr4.1:42860566-42860585 | None:intergenic | 35.0% | |
| AATCTTCTGTCATGTGCATA+TGG | - | chr4.1:42862881-42862900 | None:intergenic | 35.0% | |
| ACCAAATCCTACAATTGAGA+AGG | - | chr4.1:42863225-42863244 | None:intergenic | 35.0% | |
| ACCTCTCTTTCATTGAACAT+TGG | - | chr4.1:42858144-42858163 | None:intergenic | 35.0% | |
| ACCTTAACCTTCTCAATTGT+AGG | + | chr4.1:42863215-42863234 | MS.gene07692:CDS | 35.0% | |
| ACCTTCTCAATTGTAGGATT+TGG | + | chr4.1:42863221-42863240 | MS.gene07692:CDS | 35.0% | |
| AGGATATAAGATTTACCTGG+AGG | - | chr4.1:42861630-42861649 | None:intergenic | 35.0% | |
| AGTTCTTCATCATCTTGAAG+AGG | - | chr4.1:42858084-42858103 | None:intergenic | 35.0% | |
| ATAGAAAATTAAGCGCACCT+TGG | - | chr4.1:42862294-42862313 | None:intergenic | 35.0% | |
| CAAACTTCGACCATTGAATT+TGG | + | chr4.1:42861734-42861753 | MS.gene07692:intron | 35.0% | |
| CAAATTAGAGAAACAAGAGG+TGG | + | chr4.1:42858969-42858988 | MS.gene07692:CDS | 35.0% | |
| CAGAACAACAGTTGAAGATA+TGG | + | chr4.1:42861552-42861571 | MS.gene07692:CDS | 35.0% | |
| CAGGTTTATAAGGTTTCGAT+TGG | + | chr4.1:42858285-42858304 | MS.gene07692:intron | 35.0% | |
| CAGTAGAATCATCAAGTACT+TGG | - | chr4.1:42858353-42858372 | None:intergenic | 35.0% | |
| CGATGAGTTTGACATAATCA+CGG | - | chr4.1:42862365-42862384 | None:intergenic | 35.0% | |
| CTTCAAGATGATGAAGAACT+TGG | + | chr4.1:42858084-42858103 | MS.gene07692:CDS | 35.0% | |
| GAAAACAAACCCTTCAATCA+CGG | + | chr4.1:42859668-42859687 | MS.gene07692:intron | 35.0% | |
| GATAATGCACCCAAATATGT+CGG | - | chr4.1:42861391-42861410 | None:intergenic | 35.0% | |
| GATGGAGATTATAAGGAACA+AGG | + | chr4.1:42861965-42861984 | MS.gene07692:CDS | 35.0% | |
| GGAATTTGAACAAGAACAAC+AGG | - | chr4.1:42858123-42858142 | None:intergenic | 35.0% | |
| GGATTTGAACCGACATATTT+GGG | + | chr4.1:42861379-42861398 | MS.gene07692:intron | 35.0% | |
| GGTCAACTCAAAAACAAGAA+CGG | + | chr4.1:42860245-42860264 | MS.gene07692:intron | 35.0% | |
| GTCAACTCAAAAACAAGAAC+GGG | + | chr4.1:42860246-42860265 | MS.gene07692:intron | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr4.1:42860173-42860192 | MS.gene07692:intron | 35.0% | |
| GTTGGGACTATAACTTTGAA+TGG | - | chr4.1:42858669-42858688 | None:intergenic | 35.0% | |
| TAGTTCACTTGAAATGACTC+TGG | - | chr4.1:42857868-42857887 | None:intergenic | 35.0% | |
| TATTATGTGGGGTCATGAAT+AGG | + | chr4.1:42859927-42859946 | MS.gene07692:intron | 35.0% | |
| TCAGGATTACCAACAAGAAA+AGG | - | chr4.1:42859113-42859132 | None:intergenic | 35.0% | |
| TCATGAATGAATGCAGCAAA+TGG | + | chr4.1:42858896-42858915 | MS.gene07692:intron | 35.0% | |
| TCCAATGTTCAATGAAAGAG+AGG | + | chr4.1:42858140-42858159 | MS.gene07692:CDS | 35.0% | |
| TCCTACAATTGAGAAGGTTA+AGG | - | chr4.1:42863219-42863238 | None:intergenic | 35.0% | |
| TGAGGTTCATGTTCCAATTT+GGG | + | chr4.1:42862218-42862237 | MS.gene07692:CDS | 35.0% | |
| TGGATTTGAACCGACATATT+TGG | + | chr4.1:42861378-42861397 | MS.gene07692:intron | 35.0% | |
| TGTTACAAAAAAAACCTGGG+CGG | + | chr4.1:42859867-42859886 | MS.gene07692:intron | 35.0% | |
| TTATAAGGTTTCGATTGGAG+CGG | + | chr4.1:42858290-42858309 | MS.gene07692:CDS | 35.0% | |
| TTGAGAAGGTTAAGGTTTGA+AGG | - | chr4.1:42863211-42863230 | None:intergenic | 35.0% | |
| TTTACAAAATTACCGTGGCT+CGG | + | chr4.1:42858537-42858556 | MS.gene07692:intron | 35.0% | |
| ! | AACGGAATCTCCAAGTTTTT+CGG | - | chr4.1:42862529-42862548 | None:intergenic | 35.0% |
| ! | AATGGCACTTATGCTTTTCA+TGG | + | chr4.1:42857981-42858000 | MS.gene07692:CDS | 35.0% |
| ! | ATGGCTCTTCTAAGAAAATC+AGG | - | chr4.1:42859089-42859108 | None:intergenic | 35.0% |
| ! | CACCTCTTGTTTCTCTAATT+TGG | - | chr4.1:42858971-42858990 | None:intergenic | 35.0% |
| ! | GATTTGAGTTCCAAACAAAG+GGG | + | chr4.1:42862976-42862995 | MS.gene07692:intron | 35.0% |
| ! | GGATGGAAATTTTTGTACCT+TGG | + | chr4.1:42861601-42861620 | MS.gene07692:CDS | 35.0% |
| ! | GTGATTTGAGTTCCAAACAA+AGG | + | chr4.1:42862974-42862993 | MS.gene07692:intron | 35.0% |
| !! | ATGTGTTTTTGAACATGAGC+AGG | + | chr4.1:42863090-42863109 | MS.gene07692:intron | 35.0% |
| !! | CGTGGTTTTGCAGTATATTT+AGG | + | chr4.1:42860567-42860586 | MS.gene07692:intron | 35.0% |
| !! | TAATTAAAATGGGGGTGTTG+AGG | + | chr4.1:42858809-42858828 | MS.gene07692:intron | 35.0% |
| !!! | TATTTTGGAACCTGAATGCA+GGG | + | chr4.1:42861476-42861495 | MS.gene07692:intron | 35.0% |
| AAAGCAGGTGCATTGAAAGA+AGG | + | chr4.1:42858996-42859015 | MS.gene07692:CDS | 40.0% | |
| AATATGGGAGGGCTAATGAA+TGG | + | chr4.1:42862496-42862515 | MS.gene07692:CDS | 40.0% | |
| AGAGGGAATAGTTGAAGTGT+CGG | - | chr4.1:42860677-42860696 | None:intergenic | 40.0% | |
| AGCAGCAATTCTCCAAATAC+CGG | - | chr4.1:42861506-42861525 | None:intergenic | 40.0% | |
| AGGCTTAATTTCTTGGAGCT+AGG | + | chr4.1:42863110-42863129 | MS.gene07692:intron | 40.0% | |
| AGGTTAAGGTTTGAAGGAAG+AGG | - | chr4.1:42863205-42863224 | None:intergenic | 40.0% | |
| ATATGGGAGGGCTAATGAAT+GGG | + | chr4.1:42862497-42862516 | MS.gene07692:CDS | 40.0% | |
| ATCACCATTCTCAACTCAGT+CGG | + | chr4.1:42862264-42862283 | MS.gene07692:CDS | 40.0% | |
| ATGTAAACAGCTCCCCAAAT+TGG | - | chr4.1:42862234-42862253 | None:intergenic | 40.0% | |
| ATTGCTGCTATCAATGAAGC+AGG | + | chr4.1:42861517-42861536 | MS.gene07692:CDS | 40.0% | |
| CAAATTGGAACATGAACCTC+AGG | - | chr4.1:42862219-42862238 | None:intergenic | 40.0% | |
| CAAGATGATGAAGAACTTGG+TGG | + | chr4.1:42858087-42858106 | MS.gene07692:CDS | 40.0% | |
| CATGAGCAGGCTTAATTTCT+TGG | + | chr4.1:42863103-42863122 | MS.gene07692:intron | 40.0% | |
| CATGTCTTTACATCGTACCA+AGG | + | chr4.1:42862452-42862471 | MS.gene07692:CDS | 40.0% | |
| CCTGAAATTGCTCTTGTTCA+AGG | + | chr4.1:42859128-42859147 | MS.gene07692:CDS | 40.0% | |
| CCTTGAACAAGAGCAATTTC+AGG | - | chr4.1:42859131-42859150 | None:intergenic | 40.0% | |
| CTCAGGAACCAAAATTGTGA+GGG | - | chr4.1:42862202-42862221 | None:intergenic | 40.0% | |
| CTGAGGTTCATGTTCCAATT+TGG | + | chr4.1:42862217-42862236 | MS.gene07692:CDS | 40.0% | |
| CTTCTTGCTCAACTGTGAAA+TGG | - | chr4.1:42861252-42861271 | None:intergenic | 40.0% | |
| GAGGTTCATGTTCCAATTTG+GGG | + | chr4.1:42862219-42862238 | MS.gene07692:CDS | 40.0% | |
| GCTGCAAAAGATTATGAGCT+AGG | - | chr4.1:42861697-42861716 | None:intergenic | 40.0% | |
| GGAAATGGAATGCCAAAGAT+GGG | + | chr4.1:42858920-42858939 | MS.gene07692:CDS | 40.0% | |
| GGACAAAATTCCCCTTTGTT+TGG | - | chr4.1:42862989-42863008 | None:intergenic | 40.0% | |
| GTGTACAGAAAGTGAAGTTC+TGG | + | chr4.1:42862088-42862107 | MS.gene07692:intron | 40.0% | |
| TCAGCTACTCATGCTTTCTT+TGG | + | chr4.1:42861277-42861296 | MS.gene07692:CDS | 40.0% | |
| TCAGGAACCAAAATTGTGAG+GGG | - | chr4.1:42862201-42862220 | None:intergenic | 40.0% | |
| TCGTTAGTCATGCGAATATG+TGG | + | chr4.1:42861358-42861377 | MS.gene07692:intron | 40.0% | |
| TGAATGAATGCAGCAAATGG+TGG | + | chr4.1:42858899-42858918 | MS.gene07692:intron | 40.0% | |
| TGAATTGACCGCACTAAAGA+TGG | - | chr4.1:42862330-42862349 | None:intergenic | 40.0% | |
| TGCTAATCTGTTCCGCAAAA+TGG | + | chr4.1:42861941-42861960 | MS.gene07692:CDS | 40.0% | |
| TGGAAATGGAATGCCAAAGA+TGG | + | chr4.1:42858919-42858938 | MS.gene07692:CDS | 40.0% | |
| TGGTCAAAAACAATGGAGAG+AGG | + | chr4.1:42860113-42860132 | MS.gene07692:intron | 40.0% | |
| TTCACAGTTGAGCAAGAAGT+TGG | + | chr4.1:42861253-42861272 | MS.gene07692:CDS | 40.0% | |
| TTCCTTTACTTGCCCATCTT+TGG | - | chr4.1:42858935-42858954 | None:intergenic | 40.0% | |
| TTCTACTGACCCTGTTGTTA+AGG | + | chr4.1:42858365-42858384 | MS.gene07692:CDS | 40.0% | |
| ! | AATGCAGCAAATGGTGGAAA+TGG | + | chr4.1:42858905-42858924 | MS.gene07692:intron | 40.0% |
| ! | AGAGCCATTCCTTTTCTTGT+TGG | + | chr4.1:42859101-42859120 | MS.gene07692:CDS | 40.0% |
| ! | ATTTTGCGGAACAGATTAGC+AGG | - | chr4.1:42861942-42861961 | None:intergenic | 40.0% |
| ! | CATGCTTTCTTTGGCTTCAA+TGG | + | chr4.1:42861286-42861305 | MS.gene07692:CDS | 40.0% |
| ! | CTTCTAAGAAAATCAGGAGG+AGG | - | chr4.1:42859083-42859102 | None:intergenic | 40.0% |
| ! | GCTCTTCTAAGAAAATCAGG+AGG | - | chr4.1:42859086-42859105 | None:intergenic | 40.0% |
| ! | TCATCGTGTGAAACTTTTGC+AGG | + | chr4.1:42862388-42862407 | MS.gene07692:intron | 40.0% |
| ! | TGAGTTGAGAATGGTGATGA+TGG | - | chr4.1:42862262-42862281 | None:intergenic | 40.0% |
| ! | TGTAATCCCCCTCACAATTT+TGG | + | chr4.1:42862191-42862210 | MS.gene07692:CDS | 40.0% |
| ! | TTCTAGATTCATAGTGTCGG+TGG | + | chr4.1:42859490-42859509 | MS.gene07692:intron | 40.0% |
| !! | GATTGAAGGGTTTGTTTTCG+TGG | - | chr4.1:42859667-42859686 | None:intergenic | 40.0% |
| !! | GCAGTGTTTCTGTTCTTTTG+TGG | + | chr4.1:42863137-42863156 | MS.gene07692:CDS | 40.0% |
| !! | TAATCTCCATCGCCATTTTG+CGG | - | chr4.1:42861956-42861975 | None:intergenic | 40.0% |
| !! | TGGTTTGCTAGAATATGGGA+GGG | + | chr4.1:42862485-42862504 | MS.gene07692:CDS | 40.0% |
| !! | TTGAGAATGGTGATGATGGA+AGG | - | chr4.1:42862258-42862277 | None:intergenic | 40.0% |
| !! | TTGGTTTGCTAGAATATGGG+AGG | + | chr4.1:42862484-42862503 | MS.gene07692:CDS | 40.0% |
| !!! | GTATTTTGGAACCTGAATGC+AGG | + | chr4.1:42861475-42861494 | MS.gene07692:intron | 40.0% |
| !!! | GTTTTTGAGTTGACCCACAT+TGG | - | chr4.1:42860240-42860259 | None:intergenic | 40.0% |
| AAACCCTTCAATCACGGGTA+GGG | + | chr4.1:42859674-42859693 | MS.gene07692:intron | 45.0% | |
| AAGGTCGACCATAAGACACA+TGG | - | chr4.1:42860643-42860662 | None:intergenic | 45.0% | |
| ACAAGAGGTGGATACAAAGC+AGG | + | chr4.1:42858981-42859000 | MS.gene07692:CDS | 45.0% | |
| ACTAAATATCATAGCCGCCC+AGG | - | chr4.1:42859884-42859903 | None:intergenic | 45.0% | |
| CAAACCAATTAGGGTTGCCT+TGG | - | chr4.1:42862472-42862491 | None:intergenic | 45.0% | |
| CAGGAACCAAAATTGTGAGG+GGG | - | chr4.1:42862200-42862219 | None:intergenic | 45.0% | |
| CATTACAGTGGCCAACCAAA+AGG | - | chr4.1:42860976-42860995 | None:intergenic | 45.0% | |
| CCTCAGGAACCAAAATTGTG+AGG | - | chr4.1:42862203-42862222 | None:intergenic | 45.0% | |
| CGAAGTTTGACTACATCGAC+TGG | - | chr4.1:42861723-42861742 | None:intergenic | 45.0% | |
| CTATCAATGAAGCAGGAGGA+TGG | + | chr4.1:42861524-42861543 | MS.gene07692:CDS | 45.0% | |
| CTCACACTAGCTGGCATTAA+AGG | + | chr4.1:42862717-42862736 | MS.gene07692:intron | 45.0% | |
| CTTGTAGTCCTTACACACTG+TGG | + | chr4.1:42861417-42861436 | MS.gene07692:intron | 45.0% | |
| GGATGCTATGACTATGTGCA+TGG | + | chr4.1:42863158-42863177 | MS.gene07692:CDS | 45.0% | |
| GTTCAAGGTCGTTGGAGATT+TGG | + | chr4.1:42859143-42859162 | MS.gene07692:CDS | 45.0% | |
| TGCCAAAGATGGGCAAGTAA+AGG | + | chr4.1:42858930-42858949 | MS.gene07692:CDS | 45.0% | |
| TGGGTTGTGACCGAAAAACT+TGG | + | chr4.1:42862516-42862535 | MS.gene07692:CDS | 45.0% | |
| TTCTGTAAGGCTCATGTGCA+TGG | - | chr4.1:42862843-42862862 | None:intergenic | 45.0% | |
| TTGCTCTTGTTCAAGGTCGT+TGG | + | chr4.1:42859135-42859154 | MS.gene07692:CDS | 45.0% | |
| TTGGCAAAATTACCGAGCCA+CGG | - | chr4.1:42858552-42858571 | None:intergenic | 45.0% | |
| ! | TGTTCCGACTGAGTTGAGAA+TGG | - | chr4.1:42862271-42862290 | None:intergenic | 45.0% |
| !! | AGTTGAAGTGTCGGCAAGAA+AGG | - | chr4.1:42860668-42860687 | None:intergenic | 45.0% |
| !! | CTTTTGGTTGGCCACTGTAA+TGG | + | chr4.1:42860974-42860993 | MS.gene07692:intron | 45.0% |
| !! | GTTGAAGTGTCGGCAAGAAA+GGG | - | chr4.1:42860667-42860686 | None:intergenic | 45.0% |
| !! | TTGTTTGACTTGGGTTAGCC+CGG | + | chr4.1:42859626-42859645 | MS.gene07692:intron | 45.0% |
| !!! | CCTCACAATTTTGGTTCCTG+AGG | + | chr4.1:42862200-42862219 | MS.gene07692:CDS | 45.0% |
| !!! | AGATTTTTTTTAATTAAAAT+GGG | + | chr4.1:42858799-42858818 | MS.gene07692:intron | 5.0% |
| !!! | TAGATTTTTTTTAATTAAAA+TGG | + | chr4.1:42858798-42858817 | MS.gene07692:intron | 5.0% |
| !!! | TTTTTTTAGTAATAAAATTA+AGG | + | chr4.1:42861133-42861152 | MS.gene07692:intron | 5.0% |
| CAAACCCTTCAATCACGGGT+AGG | + | chr4.1:42859673-42859692 | MS.gene07692:intron | 50.0% | |
| CACATGTGCCACAGTGTGTA+AGG | - | chr4.1:42861428-42861447 | None:intergenic | 50.0% | |
| CACTTGTCACTCACACTAGC+TGG | + | chr4.1:42862708-42862727 | MS.gene07692:intron | 50.0% | |
| CGCTGTTCGAGCAAGTCTTA+GGG | + | chr4.1:42861579-42861598 | MS.gene07692:CDS | 50.0% | |
| CGTACCAAGGCAACCCTAAT+TGG | + | chr4.1:42862465-42862484 | MS.gene07692:CDS | 50.0% | |
| GAGCTACGATCTTGCGAACA+AGG | - | chr4.1:42862143-42862162 | None:intergenic | 50.0% | |
| GATTTACCTGGAGGTCTCCA+AGG | - | chr4.1:42861621-42861640 | None:intergenic | 50.0% | |
| GCTGCTATCAATGAAGCAGG+AGG | + | chr4.1:42861520-42861539 | MS.gene07692:CDS | 50.0% | |
| GCTGTTCGAGCAAGTCTTAG+GGG | + | chr4.1:42861580-42861599 | MS.gene07692:CDS | 50.0% | |
| GGGCTAACCCAAGTCAAACA+AGG | - | chr4.1:42859627-42859646 | None:intergenic | 50.0% | |
| GGGTAGCACCATGTGTCTTA+TGG | + | chr4.1:42860632-42860651 | MS.gene07692:intron | 50.0% | |
| GTTCCCTACCCGTGATTGAA+GGG | - | chr4.1:42859680-42859699 | None:intergenic | 50.0% | |
| TCAACTCAGTCGGAACACCA+AGG | + | chr4.1:42862274-42862293 | MS.gene07692:CDS | 50.0% | |
| TCAGATTCCAGCAGCACAGA+TGG | + | chr4.1:42861907-42861926 | MS.gene07692:CDS | 50.0% | |
| TCGCAAGATCGTAGCTCACA+TGG | + | chr4.1:42862146-42862165 | MS.gene07692:CDS | 50.0% | |
| TCGCTGTTCGAGCAAGTCTT+AGG | + | chr4.1:42861578-42861597 | MS.gene07692:CDS | 50.0% | |
| TCTGTTCCGCAAAATGGCGA+TGG | + | chr4.1:42861947-42861966 | MS.gene07692:CDS | 50.0% | |
| TGTTCCCTACCCGTGATTGA+AGG | - | chr4.1:42859681-42859700 | None:intergenic | 50.0% | |
| TTAGCCCGGTTTAGGGGAAT+GGG | + | chr4.1:42859640-42859659 | MS.gene07692:intron | 50.0% | |
| TTCGAGCAAGTCTTAGGGGA+TGG | + | chr4.1:42861584-42861603 | MS.gene07692:CDS | 50.0% | |
| TTGGAACCTGAATGCAGGGA+CGG | + | chr4.1:42861480-42861499 | MS.gene07692:intron | 50.0% | |
| TTTCGATTGGAGCGGCTTGT+GGG | + | chr4.1:42858298-42858317 | MS.gene07692:CDS | 50.0% | |
| TTTGTACCTTGGAGACCTCC+AGG | + | chr4.1:42861612-42861631 | MS.gene07692:CDS | 50.0% | |
| ! | CTGAAGGCTCTCAGAGTACT+TGG | - | chr4.1:42861891-42861910 | None:intergenic | 50.0% |
| ! | TAAGACTTGCTCGAACAGCG+AGG | - | chr4.1:42861579-42861598 | None:intergenic | 50.0% |
| ! | TCTGTGCTGCTGGAATCTGA+AGG | - | chr4.1:42861907-42861926 | None:intergenic | 50.0% |
| !! | ACTTGGGTTAGCCCGGTTTA+GGG | + | chr4.1:42859633-42859652 | MS.gene07692:intron | 50.0% |
| !! | AGTGTCGGCAAGAAAGGGTA+AGG | - | chr4.1:42860662-42860681 | None:intergenic | 50.0% |
| CACAAGACCATCTGTGCTGC+TGG | - | chr4.1:42861917-42861936 | None:intergenic | 55.0% | |
| GTGGACCCATTCCCCTAAAC+CGG | - | chr4.1:42859648-42859667 | None:intergenic | 55.0% | |
| GTTAGCCCGGTTTAGGGGAA+TGG | + | chr4.1:42859639-42859658 | MS.gene07692:intron | 55.0% | |
| GTTTCGATTGGAGCGGCTTG+TGG | + | chr4.1:42858297-42858316 | MS.gene07692:CDS | 55.0% | |
| TGGACCCATTCCCCTAAACC+GGG | - | chr4.1:42859647-42859666 | None:intergenic | 55.0% | |
| TGGATCACGAGTCGATCCGT+CGG | - | chr4.1:42858333-42858352 | None:intergenic | 55.0% | |
| TTGTGGGCTTTCATGGCCGA+CGG | + | chr4.1:42858314-42858333 | MS.gene07692:CDS | 55.0% | |
| ! | CAGCAGCACAGATGGTCTTG+TGG | + | chr4.1:42861915-42861934 | MS.gene07692:CDS | 55.0% |
| !! | CACGTGGGAAGTGCCTTTGA+TGG | - | chr4.1:42860551-42860570 | None:intergenic | 55.0% |
| !! | CATCAAAGGCACTTCCCACG+TGG | + | chr4.1:42860549-42860568 | MS.gene07692:intron | 55.0% |
| !! | CTTGGGTTAGCCCGGTTTAG+GGG | + | chr4.1:42859634-42859653 | MS.gene07692:intron | 55.0% |
| !! | GACTTGGGTTAGCCCGGTTT+AGG | + | chr4.1:42859632-42859651 | MS.gene07692:intron | 55.0% |
| !! | TCATAGTGTCGGTGGCTTGC+TGG | + | chr4.1:42859498-42859517 | MS.gene07692:intron | 55.0% |
| AACCTGAATGCAGGGACGGC+CGG | + | chr4.1:42861484-42861503 | MS.gene07692:intron | 60.0% | |
| ATGCAGGGACGGCCGGTATT+TGG | + | chr4.1:42861491-42861510 | MS.gene07692:intron | 60.0% | |
| GAGCGGCTTGTGGGCTTTCA+TGG | + | chr4.1:42858307-42858326 | MS.gene07692:CDS | 60.0% | |
| TACCGGCCGTCCCTGCATTC+AGG | - | chr4.1:42861489-42861508 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 42857835 | 42863265 | 42857835 | ID=MS.gene07692 |
| chr4.1 | mRNA | 42857835 | 42863265 | 42857835 | ID=MS.gene07692.t1;Parent=MS.gene07692 |
| chr4.1 | exon | 42857835 | 42858161 | 42857835 | ID=MS.gene07692.t1.exon1;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42857835 | 42858161 | 42857835 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42858288 | 42858386 | 42858288 | ID=MS.gene07692.t1.exon2;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42858288 | 42858386 | 42858288 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42858912 | 42859164 | 42858912 | ID=MS.gene07692.t1.exon3;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42858912 | 42859164 | 42858912 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42861197 | 42861307 | 42861197 | ID=MS.gene07692.t1.exon4;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42861197 | 42861307 | 42861197 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42861497 | 42861633 | 42861497 | ID=MS.gene07692.t1.exon5;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42861497 | 42861633 | 42861497 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42861873 | 42861986 | 42861873 | ID=MS.gene07692.t1.exon6;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42861873 | 42861986 | 42861873 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42862096 | 42862295 | 42862096 | ID=MS.gene07692.t1.exon7;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42862096 | 42862295 | 42862096 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42862410 | 42862643 | 42862410 | ID=MS.gene07692.t1.exon8;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42862410 | 42862643 | 42862410 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| chr4.1 | exon | 42863112 | 42863265 | 42863112 | ID=MS.gene07692.t1.exon9;Parent=MS.gene07692.t1 |
| chr4.1 | CDS | 42863112 | 42863265 | 42863112 | ID=cds.MS.gene07692.t1;Parent=MS.gene07692.t1 |
| Gene Sequence |
| Protein sequence |
