Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07729.t1 | XP_003595077.1 | 95.1 | 244 | 12 | 0 | 1 | 244 | 1 | 244 | 8.30E-122 | 446.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07729.t1 | Q2HIV9 | 61.2 | 245 | 86 | 5 | 1 | 241 | 1 | 240 | 1.2e-68 | 261.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07729.t1 | G7IG90 | 95.1 | 244 | 12 | 0 | 1 | 244 | 1 | 244 | 6.0e-122 | 446.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene07729.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053218 | MS.gene07729 | 0.823663 | 1.23E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07729.t1 | MTR_2g038040 | 95.082 | 244 | 12 | 0 | 1 | 244 | 1 | 244 | 3.28e-174 | 479 |
MS.gene07729.t1 | MTR_8g064700 | 32.353 | 170 | 107 | 2 | 51 | 220 | 243 | 404 | 1.38e-23 | 98.6 |
MS.gene07729.t1 | MTR_1g112680 | 32.911 | 237 | 128 | 7 | 6 | 213 | 258 | 492 | 4.79e-22 | 94.7 |
MS.gene07729.t1 | MTR_3g030700 | 34.409 | 186 | 106 | 6 | 51 | 232 | 195 | 368 | 1.03e-19 | 87.0 |
MS.gene07729.t1 | MTR_3g498695 | 30.481 | 187 | 123 | 4 | 48 | 232 | 294 | 475 | 3.40e-18 | 83.6 |
MS.gene07729.t1 | MTR_2g084280 | 26.738 | 187 | 116 | 4 | 51 | 234 | 132 | 300 | 4.18e-18 | 82.0 |
MS.gene07729.t1 | MTR_7g083900 | 32.632 | 190 | 115 | 6 | 49 | 232 | 283 | 465 | 1.43e-17 | 81.6 |
MS.gene07729.t1 | MTR_3g498695 | 31.792 | 173 | 111 | 4 | 48 | 218 | 294 | 461 | 1.89e-17 | 81.3 |
MS.gene07729.t1 | MTR_2g081040 | 30.526 | 190 | 113 | 6 | 51 | 232 | 176 | 354 | 6.44e-17 | 79.3 |
MS.gene07729.t1 | MTR_4g057270 | 31.098 | 164 | 96 | 3 | 51 | 211 | 148 | 297 | 6.79e-17 | 79.0 |
MS.gene07729.t1 | MTR_7g083900 | 32.461 | 191 | 115 | 7 | 49 | 232 | 283 | 466 | 2.88e-16 | 77.8 |
MS.gene07729.t1 | MTR_3g104100 | 28.947 | 190 | 116 | 6 | 51 | 232 | 194 | 372 | 1.63e-14 | 72.4 |
MS.gene07729.t1 | MTR_7g117670 | 60.000 | 55 | 22 | 0 | 53 | 107 | 403 | 457 | 2.00e-14 | 72.4 |
MS.gene07729.t1 | MTR_7g096350 | 43.269 | 104 | 45 | 4 | 53 | 156 | 356 | 445 | 2.37e-14 | 72.4 |
MS.gene07729.t1 | MTR_8g027495 | 55.932 | 59 | 26 | 0 | 53 | 111 | 459 | 517 | 5.44e-14 | 71.2 |
MS.gene07729.t1 | MTR_4g092700 | 28.049 | 164 | 101 | 4 | 53 | 214 | 159 | 307 | 1.35e-13 | 69.3 |
MS.gene07729.t1 | MTR_2g104560 | 23.636 | 220 | 129 | 6 | 12 | 214 | 4 | 201 | 2.04e-13 | 67.8 |
MS.gene07729.t1 | MTR_8g067280 | 29.487 | 156 | 96 | 3 | 53 | 202 | 463 | 610 | 2.47e-13 | 69.3 |
MS.gene07729.t1 | MTR_5g030430 | 30.719 | 153 | 98 | 4 | 53 | 202 | 494 | 641 | 5.02e-13 | 68.6 |
MS.gene07729.t1 | MTR_8g024790 | 50.820 | 61 | 23 | 1 | 53 | 113 | 292 | 345 | 3.74e-12 | 65.9 |
MS.gene07729.t1 | MTR_8g069740 | 25.253 | 198 | 134 | 6 | 21 | 217 | 83 | 267 | 4.08e-12 | 64.7 |
MS.gene07729.t1 | MTR_8g024770 | 60.000 | 45 | 18 | 0 | 53 | 97 | 280 | 324 | 5.13e-12 | 65.5 |
MS.gene07729.t1 | MTR_2g010450 | 28.221 | 163 | 103 | 2 | 53 | 214 | 178 | 327 | 5.21e-12 | 65.1 |
MS.gene07729.t1 | MTR_5g014600 | 26.257 | 179 | 109 | 6 | 53 | 219 | 150 | 317 | 6.01e-12 | 64.7 |
MS.gene07729.t1 | MTR_3g111290 | 51.282 | 78 | 34 | 2 | 48 | 122 | 169 | 245 | 9.34e-12 | 64.3 |
MS.gene07729.t1 | MTR_1g072320 | 40.845 | 71 | 42 | 0 | 43 | 113 | 461 | 531 | 1.15e-11 | 64.3 |
MS.gene07729.t1 | MTR_5g030770 | 35.032 | 157 | 80 | 4 | 48 | 204 | 152 | 286 | 2.04e-11 | 63.2 |
MS.gene07729.t1 | MTR_8g009020 | 26.257 | 179 | 117 | 5 | 53 | 227 | 144 | 311 | 2.80e-11 | 62.8 |
MS.gene07729.t1 | MTR_4g091910 | 28.743 | 167 | 99 | 3 | 50 | 215 | 45 | 192 | 3.34e-11 | 61.2 |
MS.gene07729.t1 | MTR_2g104490 | 26.263 | 198 | 116 | 6 | 53 | 242 | 138 | 313 | 3.72e-11 | 62.4 |
MS.gene07729.t1 | MTR_4g097950 | 37.500 | 80 | 46 | 1 | 37 | 112 | 51 | 130 | 7.33e-11 | 60.8 |
MS.gene07729.t1 | MTR_5g014520 | 37.838 | 74 | 43 | 1 | 37 | 107 | 139 | 212 | 7.74e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07729.t1 | AT5G57150 | 63.115 | 244 | 82 | 6 | 1 | 241 | 1 | 239 | 8.54e-96 | 281 |
MS.gene07729.t1 | AT4G29930 | 54.800 | 250 | 99 | 3 | 1 | 238 | 1 | 248 | 2.50e-89 | 265 |
MS.gene07729.t1 | AT4G29930 | 55.000 | 240 | 88 | 3 | 1 | 238 | 1 | 222 | 4.63e-87 | 258 |
MS.gene07729.t1 | AT5G57150 | 65.596 | 218 | 67 | 6 | 1 | 215 | 1 | 213 | 1.77e-86 | 256 |
MS.gene07729.t1 | AT4G29930 | 54.583 | 240 | 86 | 3 | 1 | 238 | 1 | 219 | 3.60e-86 | 255 |
MS.gene07729.t1 | AT5G57150 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 1.22e-85 | 254 |
MS.gene07729.t1 | AT5G57150 | 63.801 | 221 | 71 | 6 | 1 | 217 | 1 | 216 | 1.46e-85 | 254 |
MS.gene07729.t1 | AT5G57150 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 5.67e-84 | 251 |
MS.gene07729.t1 | AT4G29930 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 5.74e-80 | 241 |
MS.gene07729.t1 | AT4G29930 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 5.74e-80 | 241 |
MS.gene07729.t1 | AT4G29930 | 54.587 | 218 | 76 | 3 | 1 | 216 | 1 | 197 | 1.17e-76 | 231 |
MS.gene07729.t1 | AT4G29930 | 54.857 | 175 | 65 | 3 | 1 | 163 | 1 | 173 | 7.26e-55 | 174 |
MS.gene07729.t1 | AT1G12860 | 33.690 | 187 | 111 | 6 | 49 | 232 | 264 | 440 | 1.65e-18 | 84.3 |
MS.gene07729.t1 | AT3G26744 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.29e-18 | 84.0 |
MS.gene07729.t1 | AT3G26744 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.29e-18 | 84.0 |
MS.gene07729.t1 | AT3G26744 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.29e-18 | 84.0 |
MS.gene07729.t1 | AT2G28160 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 1.52e-17 | 80.5 |
MS.gene07729.t1 | AT2G28160 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 1.96e-17 | 80.1 |
MS.gene07729.t1 | AT2G16910 | 31.183 | 186 | 113 | 5 | 51 | 225 | 313 | 494 | 2.78e-17 | 80.9 |
MS.gene07729.t1 | AT3G26744 | 34.568 | 162 | 95 | 5 | 49 | 206 | 304 | 458 | 1.31e-16 | 79.0 |
MS.gene07729.t1 | AT1G01260 | 29.651 | 172 | 86 | 3 | 53 | 224 | 434 | 570 | 2.63e-16 | 78.2 |
MS.gene07729.t1 | AT1G01260 | 29.651 | 172 | 86 | 3 | 53 | 224 | 434 | 570 | 2.63e-16 | 78.2 |
MS.gene07729.t1 | AT1G01260 | 29.651 | 172 | 86 | 3 | 53 | 224 | 434 | 570 | 2.63e-16 | 78.2 |
MS.gene07729.t1 | AT1G12860 | 34.783 | 161 | 92 | 6 | 49 | 206 | 264 | 414 | 2.52e-15 | 75.1 |
MS.gene07729.t1 | AT2G46510 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 2.66e-15 | 75.1 |
MS.gene07729.t1 | AT5G46760 | 29.032 | 186 | 115 | 7 | 53 | 233 | 416 | 589 | 6.25e-15 | 74.3 |
MS.gene07729.t1 | AT4G17880 | 30.625 | 160 | 78 | 4 | 53 | 202 | 417 | 553 | 2.66e-14 | 72.4 |
MS.gene07729.t1 | AT4G16430 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 3.24e-14 | 72.0 |
MS.gene07729.t1 | AT1G32640 | 31.333 | 150 | 91 | 4 | 53 | 202 | 453 | 590 | 5.91e-14 | 71.2 |
MS.gene07729.t1 | AT4G37850 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 6.91e-14 | 70.5 |
MS.gene07729.t1 | AT4G37850 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 6.91e-14 | 70.5 |
MS.gene07729.t1 | AT1G63650 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 4.94e-13 | 68.6 |
MS.gene07729.t1 | AT1G63650 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 4.94e-13 | 68.6 |
MS.gene07729.t1 | AT1G63650 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 4.94e-13 | 68.6 |
MS.gene07729.t1 | AT4G21330 | 30.357 | 168 | 107 | 4 | 51 | 218 | 31 | 188 | 5.45e-12 | 63.5 |
MS.gene07729.t1 | AT5G46830 | 48.333 | 60 | 31 | 0 | 53 | 112 | 344 | 403 | 1.85e-11 | 63.9 |
MS.gene07729.t1 | AT1G10610 | 26.984 | 189 | 121 | 4 | 51 | 232 | 263 | 441 | 4.45e-11 | 62.4 |
MS.gene07729.t1 | AT2G22770 | 23.834 | 193 | 117 | 3 | 33 | 209 | 113 | 291 | 5.26e-11 | 62.0 |
MS.gene07729.t1 | AT1G10610 | 26.984 | 189 | 121 | 4 | 51 | 232 | 233 | 411 | 5.74e-11 | 62.0 |
MS.gene07729.t1 | AT1G10610 | 27.059 | 170 | 113 | 3 | 51 | 219 | 166 | 325 | 6.42e-11 | 62.0 |
MS.gene07729.t1 | AT4G00870 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 8.04e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGATCAAAATCATAATT+TGG | 0.197391 | 2.4:-51504980 | None:intergenic |
CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | 2.4:-51505023 | None:intergenic |
GGATAAAGCTTCAATTATTA+AGG | 0.255192 | 2.4:+51504862 | MS.gene07729:CDS |
TAATTTGGATTAATATTATT+AGG | 0.270353 | 2.4:-51504965 | None:intergenic |
ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2.4:-51503784 | None:intergenic |
GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2.4:+51503744 | MS.gene07729:CDS |
TTGAATCATTAGATGCTCAT+AGG | 0.324170 | 2.4:-51512108 | None:intergenic |
CCTGATGATGCTGCACCATC+TGG | 0.327488 | 2.4:-51503959 | None:intergenic |
GAGATAATGGAACTTGAATC+TGG | 0.329852 | 2.4:+51504938 | MS.gene07729:CDS |
TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | 2.4:-51504063 | None:intergenic |
GATTATTCAAGCTGAGATAA+TGG | 0.358095 | 2.4:+51504925 | MS.gene07729:CDS |
TTTACCTCAAGGACTTCAAT+TGG | 0.374167 | 2.4:-51505076 | None:intergenic |
ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | 2.4:-51503790 | None:intergenic |
ATGTTTACCTTGCTAATGTT+TGG | 0.403010 | 2.4:-51504064 | None:intergenic |
TAGATGCTCATAGGGCTTAG+AGG | 0.411365 | 2.4:-51512099 | None:intergenic |
TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2.4:+51503901 | MS.gene07729:intron |
TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | 2.4:-51503789 | None:intergenic |
TTGCAGCTGGGGATTGGATG+AGG | 0.423798 | 2.4:+51503907 | MS.gene07729:intron |
TAAGAGCTGCAATGGCTGTT+TGG | 0.423885 | 2.4:-51512071 | None:intergenic |
TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2.4:+51503783 | MS.gene07729:CDS |
TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2.4:-51503781 | None:intergenic |
ACATTGTCTCTGAAAGGAAT+AGG | 0.453984 | 2.4:+51503996 | MS.gene07729:CDS |
CCAGATGGTGCAGCATCATC+AGG | 0.460325 | 2.4:+51503959 | MS.gene07729:CDS |
TGAGCTTGACATGTAACAAA+AGG | 0.468788 | 2.4:+51506420 | MS.gene07729:CDS |
TGAATCATTAGATGCTCATA+GGG | 0.472053 | 2.4:-51512107 | None:intergenic |
CTGATGATGCTGCACCATCT+GGG | 0.496200 | 2.4:-51503958 | None:intergenic |
GCAGCTTAGGGTTACATACA+TGG | 0.504078 | 2.4:+51506379 | MS.gene07729:intron |
AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | 2.4:+51504999 | MS.gene07729:CDS |
TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2.4:-51503771 | None:intergenic |
CTAAGAACATTGTCTCTGAA+AGG | 0.544041 | 2.4:+51503990 | MS.gene07729:CDS |
GAGCTTGACATGTAACAAAA+GGG | 0.547151 | 2.4:+51506421 | MS.gene07729:CDS |
CTTTCCAATTGAAGTCCTTG+AGG | 0.548914 | 2.4:+51505072 | MS.gene07729:CDS |
TGATGATGCTGCACCATCTG+GGG | 0.561453 | 2.4:-51503957 | None:intergenic |
TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | 2.4:-51505007 | None:intergenic |
AGGGTCATTAAGAGCTGCAA+TGG | 0.567337 | 2.4:-51512079 | None:intergenic |
CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2.4:-51503729 | None:intergenic |
AGATGCTCATAGGGCTTAGA+GGG | 0.580755 | 2.4:-51512098 | None:intergenic |
TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2.4:+51503745 | MS.gene07729:CDS |
TTTGAAGACAGTCTTCATTG+AGG | 0.586246 | 2.4:+51506532 | MS.gene07729:CDS |
TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2.4:+51503722 | None:intergenic |
TTGTCTCTGAAAGGAATAGG+AGG | 0.600641 | 2.4:+51503999 | MS.gene07729:CDS |
AGATAATGGAACTTGAATCT+GGG | 0.607917 | 2.4:+51504939 | MS.gene07729:CDS |
TAACAAAAGGGCAGACACAA+TGG | 0.621554 | 2.4:+51506433 | MS.gene07729:CDS |
ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | 2.4:+51504039 | MS.gene07729:CDS |
TATGATTCAAGCTCCCCAGA+TGG | 0.634637 | 2.4:+51503944 | MS.gene07729:CDS |
CAGCTTAGGGTTACATACAT+GGG | 0.636587 | 2.4:+51506380 | MS.gene07729:intron |
AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | 2.4:+51504057 | MS.gene07729:CDS |
ATACATGGGAGAGAATACAA+TGG | 0.777577 | 2.4:+51506394 | MS.gene07729:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 51503731 | 51512122 | 51503731 | ID=MS.gene07729 |
chr2.4 | mRNA | 51503731 | 51512122 | 51503731 | ID=MS.gene07729.t1;Parent=MS.gene07729 |
chr2.4 | exon | 51503731 | 51503804 | 51503731 | ID=MS.gene07729.t1.exon1;Parent=MS.gene07729.t1 |
chr2.4 | CDS | 51503731 | 51503804 | 51503731 | ID=cds.MS.gene07729.t1;Parent=MS.gene07729.t1 |
chr2.4 | exon | 51503913 | 51504078 | 51503913 | ID=MS.gene07729.t1.exon2;Parent=MS.gene07729.t1 |
chr2.4 | CDS | 51503913 | 51504078 | 51503913 | ID=cds.MS.gene07729.t1;Parent=MS.gene07729.t1 |
chr2.4 | exon | 51504860 | 51505093 | 51504860 | ID=MS.gene07729.t1.exon3;Parent=MS.gene07729.t1 |
chr2.4 | CDS | 51504860 | 51505093 | 51504860 | ID=cds.MS.gene07729.t1;Parent=MS.gene07729.t1 |
chr2.4 | exon | 51506383 | 51506553 | 51506383 | ID=MS.gene07729.t1.exon4;Parent=MS.gene07729.t1 |
chr2.4 | CDS | 51506383 | 51506553 | 51506383 | ID=cds.MS.gene07729.t1;Parent=MS.gene07729.t1 |
chr2.4 | exon | 51512033 | 51512122 | 51512033 | ID=MS.gene07729.t1.exon5;Parent=MS.gene07729.t1 |
chr2.4 | CDS | 51512033 | 51512122 | 51512033 | ID=cds.MS.gene07729.t1;Parent=MS.gene07729.t1 |
Gene Sequence |
Protein sequence |