Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053218.t1 | XP_003604238.1 | 98.8 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 1.80E-191 | 678.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053218.t1 | Q9SAH9 | 74.0 | 315 | 82 | 0 | 15 | 329 | 6 | 320 | 3.4e-138 | 492.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053218.t1 | G7JEE5 | 98.8 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 1.3e-191 | 678.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053218 | MS.gene05470 | -0.800416 | 1.46E-48 | -1.69E-46 |
| MS.gene053218 | MS.gene061044 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene053218 | MS.gene061683 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene063145 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene063561 | -0.804659 | 1.94E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene06366 | 0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene072351 | 0.801844 | 7.43E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene07728 | 0.809148 | 2.18E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene07729 | 0.823663 | 1.23E-53 | -1.69E-46 |
| MS.gene053218 | MS.gene26474 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene053218 | MS.gene29699 | 0.81556 | 8.68E-52 | -1.69E-46 |
| MS.gene053218 | MS.gene32944 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene32945 | 0.815952 | 7.10E-52 | -1.69E-46 |
| MS.gene053218 | MS.gene33980 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene053218 | MS.gene36330 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene40310 | 0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene42631 | -0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene43207 | 0.801237 | 9.90E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene43825 | 0.807486 | 4.94E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene44954 | 0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene45693 | -0.806857 | 6.71E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene47799 | 0.80874 | 2.67E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene58351 | 0.80588 | 1.08E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene58466 | -0.820493 | 6.66E-53 | -1.69E-46 |
| MS.gene053218 | MS.gene61244 | 0.818807 | 1.62E-52 | -1.69E-46 |
| MS.gene053218 | MS.gene64829 | -0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene68200 | 0.80572 | 1.16E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene68793 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene71176 | 0.808127 | 3.61E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene76101 | 0.818288 | 2.12E-52 | -1.69E-46 |
| MS.gene053218 | MS.gene77492 | 0.808366 | 3.21E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene79856 | 0.820515 | 6.58E-53 | -1.69E-46 |
| MS.gene053218 | MS.gene87342 | 0.816688 | 4.86E-52 | -1.69E-46 |
| MS.gene053218 | MS.gene88666 | 0.825584 | 4.33E-54 | -1.69E-46 |
| MS.gene053218 | MS.gene90819 | 0.801209 | 1.00E-48 | -1.69E-46 |
| MS.gene053218 | MS.gene90969 | 0.820242 | 7.61E-53 | -1.69E-46 |
| MS.gene053218 | MS.gene95132 | 0.804453 | 2.14E-49 | -1.69E-46 |
| MS.gene053218 | MS.gene97437 | 0.806224 | 9.13E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene97726 | -0.802421 | 5.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053218 | MS.gene48491 | PPI |
| MS.gene38726 | MS.gene053218 | PPI |
| MS.gene053218 | MS.gene054632 | PPI |
| MS.gene053218 | MS.gene012993 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053218.t1 | MTR_4g006940 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| MS.gene053218.t1 | MTR_4g006940 | 99.286 | 280 | 2 | 0 | 1 | 280 | 1 | 280 | 0.0 | 574 |
| MS.gene053218.t1 | MTR_4g006940 | 99.286 | 280 | 2 | 0 | 1 | 280 | 1 | 280 | 0.0 | 574 |
| MS.gene053218.t1 | MTR_2g104960 | 81.155 | 329 | 59 | 2 | 7 | 335 | 12 | 337 | 0.0 | 536 |
| MS.gene053218.t1 | MTR_3g005170 | 51.242 | 322 | 148 | 6 | 9 | 323 | 2 | 321 | 2.76e-105 | 311 |
| MS.gene053218.t1 | MTR_3g005210 | 50.159 | 315 | 148 | 6 | 16 | 323 | 5 | 317 | 6.79e-104 | 308 |
| MS.gene053218.t1 | MTR_4g077100 | 48.125 | 320 | 157 | 6 | 11 | 323 | 5 | 322 | 1.23e-96 | 289 |
| MS.gene053218.t1 | MTR_5g072620 | 46.519 | 316 | 162 | 3 | 15 | 324 | 3 | 317 | 2.45e-96 | 288 |
| MS.gene053218.t1 | MTR_8g062440 | 47.531 | 324 | 160 | 6 | 10 | 326 | 1 | 321 | 1.52e-95 | 286 |
| MS.gene053218.t1 | MTR_4g077130 | 47.500 | 320 | 159 | 7 | 11 | 323 | 3 | 320 | 8.83e-95 | 285 |
| MS.gene053218.t1 | MTR_4g009040 | 46.296 | 324 | 162 | 4 | 11 | 326 | 4 | 323 | 1.35e-94 | 284 |
| MS.gene053218.t1 | MTR_4g009040 | 45.732 | 328 | 162 | 4 | 11 | 326 | 4 | 327 | 5.64e-94 | 283 |
| MS.gene053218.t1 | MTR_8g062440 | 47.385 | 325 | 160 | 7 | 10 | 326 | 1 | 322 | 1.49e-93 | 281 |
| MS.gene053218.t1 | MTR_8g062110 | 47.352 | 321 | 159 | 6 | 10 | 323 | 11 | 328 | 4.63e-93 | 280 |
| MS.gene053218.t1 | MTR_8g062110 | 47.352 | 321 | 159 | 6 | 10 | 323 | 2 | 319 | 4.66e-93 | 280 |
| MS.gene053218.t1 | MTR_3g005170 | 51.254 | 279 | 128 | 5 | 9 | 280 | 2 | 279 | 7.23e-91 | 273 |
| MS.gene053218.t1 | MTR_4g009690 | 46.914 | 324 | 160 | 4 | 11 | 326 | 4 | 323 | 1.26e-88 | 269 |
| MS.gene053218.t1 | MTR_3g005170 | 46.541 | 318 | 138 | 6 | 9 | 323 | 2 | 290 | 2.02e-88 | 267 |
| MS.gene053218.t1 | MTR_4g009690 | 47.222 | 324 | 158 | 5 | 11 | 326 | 4 | 322 | 3.79e-88 | 268 |
| MS.gene053218.t1 | MTR_4g077100 | 49.458 | 277 | 132 | 5 | 11 | 280 | 5 | 280 | 1.62e-84 | 257 |
| MS.gene053218.t1 | MTR_3g031650 | 42.089 | 316 | 176 | 3 | 15 | 324 | 3 | 317 | 1.65e-83 | 256 |
| MS.gene053218.t1 | MTR_8g062440 | 48.571 | 280 | 135 | 5 | 10 | 282 | 1 | 278 | 4.50e-82 | 252 |
| MS.gene053218.t1 | MTR_8g062110 | 47.842 | 278 | 136 | 5 | 10 | 280 | 2 | 277 | 6.41e-81 | 248 |
| MS.gene053218.t1 | MTR_8g062110 | 47.842 | 278 | 136 | 5 | 10 | 280 | 2 | 277 | 7.25e-81 | 248 |
| MS.gene053218.t1 | MTR_5g056600 | 41.456 | 316 | 177 | 5 | 18 | 326 | 5 | 319 | 4.04e-80 | 247 |
| MS.gene053218.t1 | MTR_1g022440 | 41.411 | 326 | 173 | 11 | 15 | 327 | 6 | 326 | 1.87e-76 | 238 |
| MS.gene053218.t1 | MTR_3g031650 | 44.569 | 267 | 142 | 2 | 15 | 275 | 3 | 269 | 3.64e-76 | 235 |
| MS.gene053218.t1 | MTR_2g028620 | 41.176 | 323 | 177 | 6 | 14 | 326 | 7 | 326 | 3.59e-75 | 234 |
| MS.gene053218.t1 | MTR_2g101330 | 39.506 | 324 | 185 | 5 | 17 | 332 | 5 | 325 | 1.02e-74 | 233 |
| MS.gene053218.t1 | MTR_1g022445 | 41.159 | 328 | 171 | 12 | 15 | 327 | 6 | 326 | 2.37e-73 | 230 |
| MS.gene053218.t1 | MTR_2g028620 | 42.336 | 274 | 146 | 5 | 14 | 277 | 7 | 278 | 4.96e-64 | 206 |
| MS.gene053218.t1 | MTR_4g092080 | 35.385 | 325 | 189 | 9 | 18 | 324 | 15 | 336 | 5.32e-54 | 180 |
| MS.gene053218.t1 | MTR_7g074880 | 33.333 | 327 | 201 | 9 | 13 | 326 | 4 | 326 | 5.52e-54 | 180 |
| MS.gene053218.t1 | MTR_8g062110 | 41.964 | 224 | 125 | 4 | 102 | 323 | 13 | 233 | 1.20e-52 | 174 |
| MS.gene053218.t1 | MTR_7g074820 | 33.837 | 331 | 197 | 12 | 13 | 326 | 4 | 329 | 1.61e-51 | 174 |
| MS.gene053218.t1 | MTR_7g074730 | 33.435 | 329 | 200 | 10 | 13 | 326 | 4 | 328 | 2.77e-51 | 173 |
| MS.gene053218.t1 | MTR_4g081440 | 34.328 | 335 | 190 | 10 | 18 | 327 | 21 | 350 | 1.28e-49 | 169 |
| MS.gene053218.t1 | MTR_4g081440 | 34.821 | 336 | 188 | 11 | 18 | 327 | 25 | 355 | 1.66e-49 | 169 |
| MS.gene053218.t1 | MTR_7g074850 | 32.432 | 333 | 199 | 12 | 13 | 326 | 4 | 329 | 6.53e-48 | 164 |
| MS.gene053218.t1 | MTR_4g023730 | 33.846 | 325 | 197 | 10 | 17 | 326 | 8 | 329 | 2.45e-44 | 155 |
| MS.gene053218.t1 | MTR_7g074710 | 32.622 | 328 | 202 | 12 | 13 | 326 | 4 | 326 | 4.53e-44 | 154 |
| MS.gene053218.t1 | MTR_8g062110 | 41.436 | 181 | 102 | 3 | 102 | 280 | 13 | 191 | 8.35e-41 | 141 |
| MS.gene053218.t1 | MTR_6g406250 | 34.333 | 300 | 178 | 8 | 13 | 299 | 51 | 344 | 4.14e-40 | 144 |
| MS.gene053218.t1 | MTR_0685s0030 | 41.875 | 160 | 91 | 2 | 164 | 323 | 2 | 159 | 1.84e-37 | 132 |
| MS.gene053218.t1 | MTR_7g074870 | 30.000 | 290 | 186 | 10 | 50 | 326 | 3 | 288 | 7.33e-34 | 126 |
| MS.gene053218.t1 | MTR_5g029990 | 30.449 | 312 | 192 | 10 | 2 | 306 | 3 | 296 | 1.25e-33 | 125 |
| MS.gene053218.t1 | MTR_2g013250 | 27.219 | 338 | 217 | 10 | 17 | 328 | 7 | 341 | 2.40e-28 | 112 |
| MS.gene053218.t1 | MTR_6g406250 | 33.491 | 212 | 128 | 5 | 13 | 213 | 51 | 260 | 2.17e-26 | 105 |
| MS.gene053218.t1 | MTR_7g117190 | 27.059 | 340 | 212 | 13 | 17 | 326 | 7 | 340 | 2.87e-26 | 107 |
| MS.gene053218.t1 | MTR_0164s0070 | 43.262 | 141 | 61 | 4 | 17 | 138 | 5 | 145 | 3.68e-26 | 103 |
| MS.gene053218.t1 | MTR_2g013230 | 27.874 | 348 | 202 | 13 | 17 | 328 | 8 | 342 | 3.75e-26 | 107 |
| MS.gene053218.t1 | MTR_0685s0030 | 42.735 | 117 | 66 | 1 | 164 | 280 | 2 | 117 | 1.00e-25 | 99.8 |
| MS.gene053218.t1 | MTR_2g013260 | 26.393 | 341 | 208 | 11 | 17 | 324 | 8 | 338 | 2.61e-25 | 104 |
| MS.gene053218.t1 | MTR_7g117190 | 28.620 | 297 | 180 | 12 | 17 | 284 | 7 | 300 | 5.65e-25 | 103 |
| MS.gene053218.t1 | MTR_2g013260 | 26.689 | 296 | 178 | 9 | 17 | 280 | 8 | 296 | 2.48e-23 | 98.2 |
| MS.gene053218.t1 | MTR_3g011130 | 41.667 | 108 | 60 | 3 | 108 | 212 | 35 | 142 | 2.19e-18 | 80.9 |
| MS.gene053218.t1 | MTR_8g062710 | 48.750 | 80 | 31 | 1 | 17 | 96 | 20 | 89 | 1.54e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053218.t1 | AT1G80820 | 73.968 | 315 | 82 | 0 | 15 | 329 | 6 | 320 | 2.96e-171 | 479 |
| MS.gene053218.t1 | AT1G15950 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.26e-167 | 469 |
| MS.gene053218.t1 | AT1G15950 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.26e-167 | 469 |
| MS.gene053218.t1 | AT1G15950 | 72.168 | 309 | 86 | 0 | 10 | 318 | 6 | 314 | 1.18e-159 | 450 |
| MS.gene053218.t1 | AT1G80820 | 73.308 | 266 | 71 | 0 | 15 | 280 | 6 | 271 | 3.98e-138 | 393 |
| MS.gene053218.t1 | AT1G15950 | 72.222 | 270 | 75 | 0 | 11 | 280 | 7 | 276 | 1.57e-136 | 389 |
| MS.gene053218.t1 | AT1G15950 | 71.533 | 274 | 78 | 0 | 11 | 284 | 7 | 280 | 1.83e-136 | 389 |
| MS.gene053218.t1 | AT1G15950 | 72.119 | 269 | 75 | 0 | 11 | 279 | 7 | 275 | 9.31e-136 | 387 |
| MS.gene053218.t1 | AT1G15950 | 75.893 | 224 | 54 | 0 | 103 | 326 | 1 | 224 | 7.11e-115 | 333 |
| MS.gene053218.t1 | AT5G19440 | 51.090 | 321 | 148 | 6 | 11 | 324 | 4 | 322 | 3.45e-105 | 311 |
| MS.gene053218.t1 | AT1G51410 | 48.457 | 324 | 156 | 7 | 11 | 326 | 3 | 323 | 3.23e-98 | 293 |
| MS.gene053218.t1 | AT5G58490 | 44.025 | 318 | 171 | 3 | 15 | 326 | 7 | 323 | 3.44e-87 | 265 |
| MS.gene053218.t1 | AT1G66800 | 47.385 | 325 | 150 | 8 | 10 | 323 | 1 | 315 | 1.05e-86 | 264 |
| MS.gene053218.t1 | AT1G09480 | 44.037 | 327 | 168 | 7 | 10 | 326 | 1 | 322 | 4.66e-86 | 262 |
| MS.gene053218.t1 | AT2G33590 | 47.436 | 312 | 154 | 5 | 17 | 322 | 9 | 316 | 1.21e-85 | 261 |
| MS.gene053218.t1 | AT1G09480 | 44.037 | 327 | 168 | 7 | 10 | 326 | 48 | 369 | 1.28e-85 | 263 |
| MS.gene053218.t1 | AT1G09510 | 45.031 | 322 | 166 | 7 | 10 | 323 | 1 | 319 | 3.15e-85 | 260 |
| MS.gene053218.t1 | AT1G09490 | 44.410 | 322 | 168 | 7 | 13 | 326 | 4 | 322 | 9.41e-85 | 259 |
| MS.gene053218.t1 | AT2G02400 | 41.509 | 318 | 177 | 4 | 15 | 326 | 4 | 318 | 9.18e-83 | 254 |
| MS.gene053218.t1 | AT1G09500 | 44.000 | 325 | 168 | 8 | 10 | 323 | 1 | 322 | 2.88e-81 | 250 |
| MS.gene053218.t1 | AT1G76470 | 43.614 | 321 | 171 | 3 | 15 | 327 | 5 | 323 | 4.05e-80 | 247 |
| MS.gene053218.t1 | AT4G35420 | 42.587 | 317 | 172 | 7 | 17 | 326 | 8 | 321 | 9.72e-80 | 246 |
| MS.gene053218.t1 | AT1G68540 | 40.379 | 317 | 179 | 5 | 19 | 326 | 6 | 321 | 7.01e-75 | 234 |
| MS.gene053218.t1 | AT1G09500 | 46.182 | 275 | 135 | 7 | 10 | 274 | 1 | 272 | 1.34e-74 | 231 |
| MS.gene053218.t1 | AT2G33600 | 45.513 | 312 | 160 | 5 | 17 | 322 | 9 | 316 | 1.20e-73 | 230 |
| MS.gene053218.t1 | AT1G25460 | 36.825 | 315 | 191 | 4 | 19 | 326 | 6 | 319 | 1.10e-66 | 213 |
| MS.gene053218.t1 | AT5G42800 | 39.264 | 326 | 182 | 10 | 15 | 328 | 6 | 327 | 7.08e-66 | 213 |
| MS.gene053218.t1 | AT1G09490 | 41.135 | 282 | 156 | 6 | 52 | 326 | 13 | 291 | 2.89e-64 | 205 |
| MS.gene053218.t1 | AT1G09500 | 41.667 | 288 | 154 | 8 | 47 | 323 | 4 | 288 | 2.38e-61 | 198 |
| MS.gene053218.t1 | AT2G45400 | 35.976 | 328 | 191 | 10 | 16 | 326 | 39 | 364 | 5.05e-53 | 179 |
| MS.gene053218.t1 | AT1G61720 | 34.084 | 311 | 185 | 9 | 13 | 306 | 9 | 316 | 6.78e-51 | 172 |
| MS.gene053218.t1 | AT2G45400 | 37.276 | 279 | 160 | 7 | 16 | 279 | 39 | 317 | 4.97e-49 | 167 |
| MS.gene053218.t1 | AT4G27250 | 35.647 | 317 | 171 | 12 | 18 | 306 | 14 | 325 | 1.31e-47 | 164 |
| MS.gene053218.t1 | AT4G27250 | 35.922 | 309 | 171 | 12 | 18 | 306 | 14 | 315 | 5.56e-47 | 162 |
| MS.gene053218.t1 | AT1G68540 | 37.441 | 211 | 130 | 2 | 117 | 326 | 5 | 214 | 3.26e-46 | 156 |
| MS.gene053218.t1 | AT2G23910 | 32.441 | 299 | 176 | 8 | 18 | 302 | 11 | 297 | 6.25e-44 | 153 |
| MS.gene053218.t1 | AT2G23910 | 32.971 | 276 | 160 | 7 | 18 | 280 | 11 | 274 | 7.22e-44 | 152 |
| MS.gene053218.t1 | AT2G23910 | 33.212 | 274 | 158 | 7 | 18 | 278 | 11 | 272 | 1.26e-43 | 151 |
| MS.gene053218.t1 | AT4G30470 | 30.952 | 294 | 186 | 6 | 18 | 302 | 11 | 296 | 1.21e-38 | 139 |
| MS.gene053218.t1 | AT2G45400 | 32.653 | 294 | 180 | 9 | 49 | 326 | 16 | 307 | 1.39e-35 | 131 |
| MS.gene053218.t1 | AT5G14700 | 33.213 | 277 | 161 | 8 | 12 | 270 | 50 | 320 | 1.70e-35 | 132 |
| MS.gene053218.t1 | AT2G23910 | 31.679 | 262 | 154 | 7 | 54 | 302 | 14 | 263 | 1.14e-34 | 128 |
| MS.gene053218.t1 | AT2G45400 | 37.037 | 216 | 122 | 6 | 16 | 217 | 39 | 254 | 5.29e-34 | 125 |
| MS.gene053218.t1 | AT5G14700 | 32.444 | 225 | 132 | 6 | 12 | 221 | 50 | 269 | 9.07e-27 | 107 |
| MS.gene053218.t1 | AT4G33360 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.10e-17 | 82.8 |
| MS.gene053218.t1 | AT4G33360 | 28.279 | 244 | 152 | 8 | 17 | 253 | 3 | 230 | 1.37e-17 | 82.8 |
| MS.gene053218.t1 | AT4G33360 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.78e-17 | 82.4 |
Find 77 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATCTCTACTCGTATT+TGG | 0.148678 | 4.2:+92676034 | None:intergenic |
| CTGGCGGGTTCATAGCTTCT+TGG | 0.234598 | 4.2:-92676729 | MS.gene053218:CDS |
| CACATCCTCAAGTACCTTAA+TGG | 0.244324 | 4.2:-92675688 | MS.gene053218:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.275623 | 4.2:-92675748 | MS.gene053218:CDS |
| TCTTTCAAGTGATCATTCTT+TGG | 0.278143 | 4.2:+92676410 | None:intergenic |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4.2:-92675533 | MS.gene053218:CDS |
| AAAAGAAAATCAAGTTGATT+TGG | 0.293241 | 4.2:-92675776 | MS.gene053218:CDS |
| ATCGATTGGAACGGTCTATA+TGG | 0.308610 | 4.2:-92676059 | MS.gene053218:CDS |
| GAATGATCACTTGAAAGAAT+TGG | 0.322640 | 4.2:-92676405 | MS.gene053218:CDS |
| TTGGCTTGTCAAACTTCTCT+TGG | 0.330178 | 4.2:-92676710 | MS.gene053218:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4.2:+92674303 | None:intergenic |
| TCTATCCAATCTGTTGTTCA+TGG | 0.337063 | 4.2:-92676329 | MS.gene053218:CDS |
| TATGAGACAAATTCTGCTTC+TGG | 0.341001 | 4.2:-92675589 | MS.gene053218:CDS |
| TTCTTTGTTCCATTCACTGC+TGG | 0.346517 | 4.2:+92676133 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4.2:-92674230 | MS.gene053218:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4.2:+92675660 | None:intergenic |
| GAAAGAGGTTACACTGTTAG+AGG | 0.360156 | 4.2:-92676688 | MS.gene053218:CDS |
| AAATTTGCATACCTGGGTTT+CGG | 0.363831 | 4.2:+92676659 | None:intergenic |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4.2:-92675835 | MS.gene053218:intron |
| CAACATCTCTACTCGTATTT+GGG | 0.380185 | 4.2:+92676035 | None:intergenic |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4.2:+92674183 | None:intergenic |
| ACAATCTTATGTTCATGTTA+AGG | 0.400887 | 4.2:-92675638 | MS.gene053218:CDS |
| ATCGTGTGTGTCACCGGTGC+TGG | 0.407046 | 4.2:-92676748 | MS.gene053218:CDS |
| CACCGGTGACACACACGATT+TGG | 0.409017 | 4.2:+92676752 | None:intergenic |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4.2:-92675834 | MS.gene053218:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4.2:+92675724 | None:intergenic |
| TCATATAAACATTGCTTCAC+AGG | 0.433601 | 4.2:+92674240 | None:intergenic |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4.2:+92675742 | None:intergenic |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4.2:+92675712 | None:intergenic |
| GTCAAACTTCTCTTGGAAAG+AGG | 0.467940 | 4.2:-92676703 | MS.gene053218:CDS |
| AAAATAACTCACAGGGTTGT+CGG | 0.470932 | 4.2:+92676271 | None:intergenic |
| AGAGAGGCTAACTTTGCATA+AGG | 0.471199 | 4.2:-92676372 | MS.gene053218:CDS |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4.2:-92674277 | MS.gene053218:CDS |
| GATAACACTTCATCAGTCTC+TGG | 0.493312 | 4.2:-92676781 | MS.gene053218:CDS |
| GACTGATGAAGTGTTATCAT+AGG | 0.499014 | 4.2:+92676786 | None:intergenic |
| CATATAATAGGATGAGATGT+TGG | 0.502572 | 4.2:-92676158 | MS.gene053218:intron |
| AACACTTACTTGGTAGGAAG+TGG | 0.504048 | 4.2:+92675490 | None:intergenic |
| TTATGTTCATGTTAAGGATG+TGG | 0.505241 | 4.2:-92675632 | MS.gene053218:CDS |
| GTTGTGTTCACTTCATCGAT+TGG | 0.505971 | 4.2:-92676073 | MS.gene053218:CDS |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4.2:-92674271 | MS.gene053218:CDS |
| CTCACAGGGTTGTCGGTGAC+AGG | 0.510560 | 4.2:+92676278 | None:intergenic |
| GACCAAATCGTGTGTGTCAC+CGG | 0.524328 | 4.2:-92676754 | MS.gene053218:CDS |
| AGCTATGAACCCGCCAGCAC+CGG | 0.525430 | 4.2:+92676735 | None:intergenic |
| TTGTAGTTGATGAATCGTAT+TGG | 0.525667 | 4.2:-92676015 | MS.gene053218:CDS |
| GGCAACCATGAACAACAGAT+TGG | 0.526807 | 4.2:+92676324 | None:intergenic |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4.2:+92674173 | None:intergenic |
| ATGTTGGAGCCAGCAGTGAA+TGG | 0.533675 | 4.2:-92676142 | MS.gene053218:CDS |
| TGTGTGTCACCGGTGCTGGC+GGG | 0.540247 | 4.2:-92676744 | MS.gene053218:CDS |
| GATGAAGTGTTATCATAGGC+AGG | 0.541028 | 4.2:+92676790 | None:intergenic |
| GTGTGTGTCACCGGTGCTGG+CGG | 0.544302 | 4.2:-92676745 | MS.gene053218:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4.2:-92674276 | MS.gene053218:CDS |
| TTGGTAGGAAGTGGGTACTC+AGG | 0.551005 | 4.2:+92675499 | None:intergenic |
| TCTGTTGTTCATGGTTGCCA+TGG | 0.552494 | 4.2:-92676320 | MS.gene053218:CDS |
| ATATGAAACACTTACTTGGT+AGG | 0.553678 | 4.2:+92675484 | None:intergenic |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4.2:+92674174 | None:intergenic |
| AGAGGAACCGTCCGAAACCC+AGG | 0.563011 | 4.2:-92676670 | MS.gene053218:intron |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4.2:-92674213 | MS.gene053218:CDS |
| GGTTGTTGTGAACCCAGTTG+TGG | 0.566597 | 4.2:-92675755 | MS.gene053218:CDS |
| TGGGTACTCAGGAAAATACT+TGG | 0.568031 | 4.2:+92675510 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4.2:+92674177 | None:intergenic |
| GATCACTTGAAAGAATTGGA+AGG | 0.576295 | 4.2:-92676401 | MS.gene053218:CDS |
| CAGCACCATTAAGGTACTTG+AGG | 0.581125 | 4.2:+92675683 | None:intergenic |
| TTGCATACCTGGGTTTCGGA+CGG | 0.587038 | 4.2:+92676663 | None:intergenic |
| GTTCACTTCATCGATTGGAA+CGG | 0.592538 | 4.2:-92676068 | MS.gene053218:CDS |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4.2:-92675548 | MS.gene053218:CDS |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4.2:-92675807 | MS.gene053218:CDS |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4.2:-92675806 | MS.gene053218:CDS |
| AACACTTCATCAGTCTCTGG+TGG | 0.644313 | 4.2:-92676778 | MS.gene053218:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4.2:+92674187 | None:intergenic |
| AATTGGAAGGAGCAAGAGAG+AGG | 0.645670 | 4.2:-92676388 | MS.gene053218:CDS |
| ACACTTACTTGGTAGGAAGT+GGG | 0.647055 | 4.2:+92675491 | None:intergenic |
| AAGCTGTGTGGAACACACCA+TGG | 0.653770 | 4.2:+92676303 | None:intergenic |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4.2:+92675743 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4.2:-92675553 | MS.gene053218:CDS |
| AGAGCATTGCAAGAACACCA+AGG | 0.704040 | 4.2:-92675984 | MS.gene053218:intron |
| CGGTGACAGGAGAAGCTGTG+TGG | 0.708743 | 4.2:+92676291 | None:intergenic |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4.2:-92675824 | MS.gene053218:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTATGATATATTCT+TGG | + | chr4.2:92676277-92676296 | None:intergenic | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | - | chr4.2:92676183-92676202 | MS.gene053218:intron | 10.0% |
| !! | CATTTAGTTAATTAATATAA+GGG | - | chr4.2:92676119-92676138 | MS.gene053218:CDS | 10.0% |
| !! | GTTAAGTTAAATAAATAATT+TGG | - | chr4.2:92674436-92674455 | MS.gene053218:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | - | chr4.2:92676184-92676203 | MS.gene053218:intron | 10.0% |
| !!! | TTTTATTTGTATATAATTAG+AGG | - | chr4.2:92674531-92674550 | MS.gene053218:intron | 10.0% |
| !!! | TTTTTAAGTTAATTATGTTA+TGG | - | chr4.2:92675518-92675537 | MS.gene053218:CDS | 10.0% |
| !! | ATTAAGATTAATTAATTAGG+TGG | - | chr4.2:92675086-92675105 | MS.gene053218:intron | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | - | chr4.2:92676554-92676573 | MS.gene053218:intron | 15.0% |
| !! | GCATTTAGTTAATTAATATA+AGG | - | chr4.2:92676118-92676137 | MS.gene053218:CDS | 15.0% |
| !! | TATTAATTAACTAAATGCTT+AGG | + | chr4.2:92676116-92676135 | None:intergenic | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | + | chr4.2:92675950-92675969 | None:intergenic | 15.0% |
| !! | TGTGAAATTAAATTTACAAA+TGG | + | chr4.2:92674730-92674749 | None:intergenic | 15.0% |
| !! | TTTATAAAGAGTAACTTATA+AGG | - | chr4.2:92674764-92674783 | MS.gene053218:intron | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | + | chr4.2:92676158-92676177 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | - | chr4.2:92676280-92676299 | MS.gene053218:intron | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | + | chr4.2:92676353-92676372 | None:intergenic | 15.0% |
| !! | AAATAATTGCTATGTTTATG+TGG | - | chr4.2:92674374-92674393 | MS.gene053218:intron | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | - | chr4.2:92676736-92676755 | MS.gene053218:CDS | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | - | chr4.2:92676240-92676259 | MS.gene053218:intron | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | - | chr4.2:92676553-92676572 | MS.gene053218:intron | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | - | chr4.2:92676239-92676258 | MS.gene053218:intron | 20.0% |
| !!! | AAAAGAAAATCAAGTTGATT+TGG | - | chr4.2:92675190-92675209 | MS.gene053218:intron | 20.0% |
| !!! | AAGGTGAATTAATCATTTTA+TGG | - | chr4.2:92674783-92674802 | MS.gene053218:intron | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | - | chr4.2:92675729-92675748 | MS.gene053218:CDS | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | + | chr4.2:92675944-92675963 | None:intergenic | 20.0% |
| !!! | ACTTTTGATCTCAAAATTTT+GGG | + | chr4.2:92675713-92675732 | None:intergenic | 20.0% |
| !!! | CATTTTATGGAACATATAAT+AGG | - | chr4.2:92674796-92674815 | MS.gene053218:intron | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | + | chr4.2:92676154-92676173 | None:intergenic | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | + | chr4.2:92676678-92676697 | None:intergenic | 20.0% |
| ! | AAACATAGAAAATAACTCAC+AGG | + | chr4.2:92674706-92674725 | None:intergenic | 25.0% |
| ! | AACATAGAAAATAACTCACA+GGG | + | chr4.2:92674705-92674724 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | - | chr4.2:92675328-92675347 | MS.gene053218:intron | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | + | chr4.2:92676269-92676288 | None:intergenic | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | + | chr4.2:92675917-92675936 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | + | chr4.2:92676468-92676487 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | + | chr4.2:92675257-92675276 | None:intergenic | 25.0% |
| ! | CTTATGACTTATCTAGATTA+GGG | - | chr4.2:92675558-92675577 | MS.gene053218:CDS | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | + | chr4.2:92675755-92675774 | None:intergenic | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | - | chr4.2:92676470-92676489 | MS.gene053218:intron | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | + | chr4.2:92675756-92675775 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | - | chr4.2:92676469-92676488 | MS.gene053218:intron | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | + | chr4.2:92676308-92676327 | None:intergenic | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | - | chr4.2:92675990-92676009 | MS.gene053218:CDS | 25.0% |
| !! | CTTTTGATCTCAAAATTTTG+GGG | + | chr4.2:92675712-92675731 | None:intergenic | 25.0% |
| !! | GACTTTTGATCTCAAAATTT+TGG | + | chr4.2:92675714-92675733 | None:intergenic | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | + | chr4.2:92675245-92675264 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTGTGCAGAAC+TGG | - | chr4.2:92675120-92675139 | MS.gene053218:intron | 25.0% |
| !!! | ATCGAGTTTTTTTGTTTGTT+AGG | + | chr4.2:92675852-92675871 | None:intergenic | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | + | chr4.2:92676597-92676616 | None:intergenic | 25.0% |
| !!! | TCGAGTTTTTTTGTTTGTTA+GGG | + | chr4.2:92675851-92675870 | None:intergenic | 25.0% |
| AAATCAAAAGCTGAAAGACT+TGG | - | chr4.2:92676689-92676708 | MS.gene053218:CDS | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | + | chr4.2:92676666-92676685 | None:intergenic | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | - | chr4.2:92676690-92676709 | MS.gene053218:CDS | 30.0% | |
| AGTAAAAGCTAATGAACACA+CGG | - | chr4.2:92676381-92676400 | MS.gene053218:CDS | 30.0% | |
| ATATGAAACACTTACTTGGT+AGG | + | chr4.2:92675485-92675504 | None:intergenic | 30.0% | |
| ATGACTTCTCCTAAAAATAG+TGG | + | chr4.2:92676058-92676077 | None:intergenic | 30.0% | |
| CATATAATAGGATGAGATGT+TGG | - | chr4.2:92674808-92674827 | MS.gene053218:intron | 30.0% | |
| GAAAAAAACTTAGTTGAGAG+AGG | + | chr4.2:92675603-92675622 | None:intergenic | 30.0% | |
| GAATGATCACTTGAAAGAAT+TGG | - | chr4.2:92674561-92674580 | MS.gene053218:intron | 30.0% | |
| GACTATATGAAACACTTACT+TGG | + | chr4.2:92675489-92675508 | None:intergenic | 30.0% | |
| GCTTATGACTTATCTAGATT+AGG | - | chr4.2:92675557-92675576 | MS.gene053218:CDS | 30.0% | |
| GTAGTGAATTAATCAAACCT+TGG | + | chr4.2:92675002-92675021 | None:intergenic | 30.0% | |
| TCATATAAACATTGCTTCAC+AGG | + | chr4.2:92676729-92676748 | None:intergenic | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | - | chr4.2:92675765-92675784 | MS.gene053218:CDS | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | - | chr4.2:92676531-92676550 | MS.gene053218:intron | 30.0% | |
| TTATGTTCATGTTAAGGATG+TGG | - | chr4.2:92675334-92675353 | MS.gene053218:intron | 30.0% | |
| ! | ATTTTACAGGTAAAAACGAG+TGG | - | chr4.2:92676003-92676022 | MS.gene053218:CDS | 30.0% |
| ! | TCTTTCAAGTGATCATTCTT+TGG | + | chr4.2:92674559-92674578 | None:intergenic | 30.0% |
| ! | TGTTGCATTCACATAAGTTT+TGG | + | chr4.2:92675309-92675328 | None:intergenic | 30.0% |
| !! | TGACTTGTTCATTCTAAACA+GGG | + | chr4.2:92675811-92675830 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | + | chr4.2:92675812-92675831 | None:intergenic | 30.0% |
| !! | TTGTAGTTGATGAATCGTAT+TGG | - | chr4.2:92674951-92674970 | MS.gene053218:intron | 30.0% |
| AAAATAACTCACAGGGTTGT+CGG | + | chr4.2:92674698-92674717 | None:intergenic | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | - | chr4.2:92675875-92675894 | MS.gene053218:intron | 35.0% | |
| AAATTTGCATACCTGGGTTT+CGG | + | chr4.2:92674310-92674329 | None:intergenic | 35.0% | |
| ACAACATCTCTACTCGTATT+TGG | + | chr4.2:92674935-92674954 | None:intergenic | 35.0% | |
| CAACATCTCTACTCGTATTT+GGG | + | chr4.2:92674934-92674953 | None:intergenic | 35.0% | |
| CGTGATAAATTTGCATACCT+GGG | + | chr4.2:92674316-92674335 | None:intergenic | 35.0% | |
| GATCACTTGAAAGAATTGGA+AGG | - | chr4.2:92674565-92674584 | MS.gene053218:intron | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | - | chr4.2:92675766-92675785 | MS.gene053218:CDS | 35.0% | |
| GTGTACATCTAACTTGATCT+TGG | - | chr4.2:92675764-92675783 | MS.gene053218:CDS | 35.0% | |
| TAATCTATAGTCGCAGAGAT+AGG | + | chr4.2:92676436-92676455 | None:intergenic | 35.0% | |
| TATGAGACAAATTCTGCTTC+TGG | - | chr4.2:92675377-92675396 | MS.gene053218:intron | 35.0% | |
| TCGTGATAAATTTGCATACC+TGG | + | chr4.2:92674317-92674336 | None:intergenic | 35.0% | |
| TCTATCCAATCTGTTGTTCA+TGG | - | chr4.2:92674637-92674656 | MS.gene053218:intron | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | - | chr4.2:92675132-92675151 | MS.gene053218:intron | 35.0% | |
| ! | GACTGATGAAGTGTTATCAT+AGG | + | chr4.2:92674183-92674202 | None:intergenic | 35.0% |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | - | chr4.2:92675433-92675452 | MS.gene053218:intron | 35.0% |
| !! | CATTACCAGCCACTATTTTT+AGG | - | chr4.2:92676046-92676065 | MS.gene053218:CDS | 35.0% |
| !! | GAACTCGAGATTTTGTTTAC+AGG | - | chr4.2:92675636-92675655 | MS.gene053218:CDS | 35.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | - | chr4.2:92676695-92676714 | MS.gene053218:CDS | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | + | chr4.2:92675479-92675498 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | + | chr4.2:92675478-92675497 | None:intergenic | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | - | chr4.2:92675879-92675898 | MS.gene053218:intron | 40.0% | |
| AGAGAGGCTAACTTTGCATA+AGG | - | chr4.2:92674594-92674613 | MS.gene053218:intron | 40.0% | |
| ATCGATTGGAACGGTCTATA+TGG | - | chr4.2:92674907-92674926 | MS.gene053218:intron | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | - | chr4.2:92675770-92675789 | MS.gene053218:CDS | 40.0% | |
| CACATCCTCAAGTACCTTAA+TGG | - | chr4.2:92675278-92675297 | MS.gene053218:intron | 40.0% | |
| CTTAGTTGAGAGAGGAGAAT+TGG | + | chr4.2:92675595-92675614 | None:intergenic | 40.0% | |
| CTTCTCCTAAAAATAGTGGC+TGG | + | chr4.2:92676054-92676073 | None:intergenic | 40.0% | |
| GAAAGAGGTTACACTGTTAG+AGG | - | chr4.2:92674278-92674297 | MS.gene053218:CDS | 40.0% | |
| GATAACACTTCATCAGTCTC+TGG | - | chr4.2:92674185-92674204 | MS.gene053218:CDS | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | - | chr4.2:92675142-92675161 | MS.gene053218:intron | 40.0% | |
| GTCAAACTTCTCTTGGAAAG+AGG | - | chr4.2:92674263-92674282 | MS.gene053218:CDS | 40.0% | |
| GTGCAGAACTGGTATTGTTA+TGG | - | chr4.2:92675131-92675150 | MS.gene053218:intron | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | + | chr4.2:92676083-92676102 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | + | chr4.2:92676087-92676106 | None:intergenic | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | - | chr4.2:92676753-92676772 | MS.gene053218:CDS | 40.0% | |
| GTTGTGTTCACTTCATCGAT+TGG | - | chr4.2:92674893-92674912 | MS.gene053218:intron | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | + | chr4.2:92676795-92676814 | None:intergenic | 40.0% | |
| TGGGTACTCAGGAAAATACT+TGG | + | chr4.2:92675459-92675478 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | + | chr4.2:92676796-92676815 | None:intergenic | 40.0% | |
| TTCTTTGTTCCATTCACTGC+TGG | + | chr4.2:92674836-92674855 | None:intergenic | 40.0% | |
| ! | ACACACGGTATTTGTTAACG+CGG | - | chr4.2:92676396-92676415 | MS.gene053218:CDS | 40.0% |
| ! | GATGAAGTGTTATCATAGGC+AGG | + | chr4.2:92674179-92674198 | None:intergenic | 40.0% |
| ! | GTTCACTTCATCGATTGGAA+CGG | - | chr4.2:92674898-92674917 | MS.gene053218:intron | 40.0% |
| !! | AAGTTTTGGCAGCACCATTA+AGG | + | chr4.2:92675295-92675314 | None:intergenic | 40.0% |
| !! | GTCAAAGTTGGTATACCTAG+AGG | + | chr4.2:92675905-92675924 | None:intergenic | 40.0% |
| !! | TTGGCTTGTCAAACTTCTCT+TGG | - | chr4.2:92674256-92674275 | MS.gene053218:CDS | 40.0% |
| AACACTTCATCAGTCTCTGG+TGG | - | chr4.2:92674188-92674207 | MS.gene053218:CDS | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | + | chr4.2:92675227-92675246 | None:intergenic | 45.0% | |
| AATTGGAAGGAGCAAGAGAG+AGG | - | chr4.2:92674578-92674597 | MS.gene053218:intron | 45.0% | |
| AGTGGCTGAACAATCAGCAT+GGG | - | chr4.2:92675160-92675179 | MS.gene053218:intron | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | + | chr4.2:92675226-92675245 | None:intergenic | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | - | chr4.2:92675878-92675897 | MS.gene053218:intron | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | - | chr4.2:92675769-92675788 | MS.gene053218:CDS | 45.0% | |
| GGCAACCATGAACAACAGAT+TGG | + | chr4.2:92674645-92674664 | None:intergenic | 45.0% | |
| GTCGCAGAGATAGGTACAAT+TGG | + | chr4.2:92676427-92676446 | None:intergenic | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | - | chr4.2:92675771-92675790 | MS.gene053218:CDS | 45.0% | |
| TCTGTTGTTCATGGTTGCCA+TGG | - | chr4.2:92674646-92674665 | MS.gene053218:intron | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | + | chr4.2:92676786-92676805 | None:intergenic | 45.0% | |
| TGTGAAACTGCTTTGCATCG+TGG | - | chr4.2:92675413-92675432 | MS.gene053218:intron | 45.0% | |
| ! | CAGCACCATTAAGGTACTTG+AGG | + | chr4.2:92675286-92675305 | None:intergenic | 45.0% |
| ! | CGGTATTTGTTAACGCGGTT+TGG | - | chr4.2:92676401-92676420 | MS.gene053218:CDS | 45.0% |
| !! | AGAGCATTGCAAGAACACCA+AGG | - | chr4.2:92674982-92675001 | MS.gene053218:intron | 45.0% |
| !! | AATATTAAGATTAATTAATT+AGG | - | chr4.2:92675083-92675102 | MS.gene053218:intron | 5.0% |
| AACTGCTTTGCATCGTGGTG+AGG | - | chr4.2:92675418-92675437 | MS.gene053218:intron | 50.0% | |
| AAGCTGTGTGGAACACACCA+TGG | + | chr4.2:92674666-92674685 | None:intergenic | 50.0% | |
| ATGTTGGAGCCAGCAGTGAA+TGG | - | chr4.2:92674824-92674843 | MS.gene053218:intron | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | - | chr4.2:92675159-92675178 | MS.gene053218:intron | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | + | chr4.2:92676782-92676801 | None:intergenic | 50.0% | |
| GACCAAATCGTGTGTGTCAC+CGG | - | chr4.2:92674212-92674231 | MS.gene053218:CDS | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | + | chr4.2:92675883-92675902 | None:intergenic | 50.0% | |
| GGTTGTTGTGAACCCAGTTG+TGG | - | chr4.2:92675211-92675230 | MS.gene053218:intron | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | - | chr4.2:92675218-92675237 | MS.gene053218:intron | 50.0% | |
| TTGCATACCTGGGTTTCGGA+CGG | + | chr4.2:92674306-92674325 | None:intergenic | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | + | chr4.2:92675470-92675489 | None:intergenic | 50.0% | |
| AACTTGATCTTGGGGTGGGG+TGG | - | chr4.2:92675774-92675793 | MS.gene053218:CDS | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | - | chr4.2:92675775-92675794 | MS.gene053218:CDS | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | - | chr4.2:92675887-92675906 | MS.gene053218:intron | 55.0% | |
| CACCGGTGACACACACGATT+TGG | + | chr4.2:92674217-92674236 | None:intergenic | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | + | chr4.2:92676792-92676811 | None:intergenic | 55.0% | |
| !! | CTGGCGGGTTCATAGCTTCT+TGG | - | chr4.2:92674237-92674256 | MS.gene053218:CDS | 55.0% |
| AGAGGAACCGTCCGAAACCC+AGG | - | chr4.2:92674296-92674315 | MS.gene053218:CDS | 60.0% | |
| AGCTATGAACCCGCCAGCAC+CGG | + | chr4.2:92674234-92674253 | None:intergenic | 60.0% | |
| ATCGTGTGTGTCACCGGTGC+TGG | - | chr4.2:92674218-92674237 | MS.gene053218:CDS | 60.0% | |
| CGGTGACAGGAGAAGCTGTG+TGG | + | chr4.2:92674678-92674697 | None:intergenic | 60.0% | |
| CTCACAGGGTTGTCGGTGAC+AGG | + | chr4.2:92674691-92674710 | None:intergenic | 60.0% | |
| ! | GTGTGTGTCACCGGTGCTGG+CGG | - | chr4.2:92674221-92674240 | MS.gene053218:CDS | 65.0% |
| !! | TGTGTGTCACCGGTGCTGGC+GGG | - | chr4.2:92674222-92674241 | MS.gene053218:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92674173 | 92676815 | 92674173 | ID=MS.gene053218 |
| chr4.2 | mRNA | 92674173 | 92676815 | 92674173 | ID=MS.gene053218.t1;Parent=MS.gene053218 |
| chr4.2 | exon | 92676671 | 92676815 | 92676671 | ID=MS.gene053218.t1.exon1;Parent=MS.gene053218.t1 |
| chr4.2 | CDS | 92676671 | 92676815 | 92676671 | ID=cds.MS.gene053218.t1;Parent=MS.gene053218.t1 |
| chr4.2 | exon | 92676283 | 92676437 | 92676283 | ID=MS.gene053218.t1.exon2;Parent=MS.gene053218.t1 |
| chr4.2 | CDS | 92676283 | 92676437 | 92676283 | ID=cds.MS.gene053218.t1;Parent=MS.gene053218.t1 |
| chr4.2 | exon | 92675985 | 92676170 | 92675985 | ID=MS.gene053218.t1.exon3;Parent=MS.gene053218.t1 |
| chr4.2 | CDS | 92675985 | 92676170 | 92675985 | ID=cds.MS.gene053218.t1;Parent=MS.gene053218.t1 |
| chr4.2 | exon | 92675499 | 92675851 | 92675499 | ID=MS.gene053218.t1.exon4;Parent=MS.gene053218.t1 |
| chr4.2 | CDS | 92675499 | 92675851 | 92675499 | ID=cds.MS.gene053218.t1;Parent=MS.gene053218.t1 |
| chr4.2 | exon | 92674173 | 92674344 | 92674173 | ID=MS.gene053218.t1.exon5;Parent=MS.gene053218.t1 |
| chr4.2 | CDS | 92674173 | 92674344 | 92674173 | ID=cds.MS.gene053218.t1;Parent=MS.gene053218.t1 |
| Gene Sequence |
| Protein sequence |
