Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07870.t1 | KEH18450.1 | 97.5 | 668 | 17 | 0 | 1 | 668 | 1 | 668 | 0.00E+00 | 1226.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07870.t1 | Q8L793 | 42.8 | 638 | 290 | 16 | 42 | 667 | 11 | 585 | 7.7e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07870.t1 | A0A072TY37 | 97.5 | 668 | 17 | 0 | 1 | 668 | 1 | 668 | 0.0e+00 | 1226.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059026 | MS.gene07870 | -0.834554 | 2.80E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07870.t1 | MTR_8g019560 | 97.455 | 668 | 17 | 0 | 1 | 668 | 1 | 668 | 0.0 | 1348 |
| MS.gene07870.t1 | MTR_8g019560 | 97.806 | 638 | 14 | 0 | 31 | 668 | 1 | 638 | 0.0 | 1291 |
| MS.gene07870.t1 | MTR_8g019560 | 97.492 | 638 | 14 | 1 | 31 | 668 | 1 | 636 | 0.0 | 1282 |
| MS.gene07870.t1 | MTR_2g099480 | 67.291 | 587 | 174 | 8 | 80 | 659 | 30 | 605 | 0.0 | 690 |
| MS.gene07870.t1 | MTR_3g051270 | 31.356 | 118 | 76 | 1 | 89 | 206 | 25 | 137 | 1.18e-12 | 71.2 |
| MS.gene07870.t1 | MTR_3g051270 | 31.356 | 118 | 76 | 1 | 89 | 206 | 25 | 137 | 1.33e-12 | 70.9 |
| MS.gene07870.t1 | MTR_3g051270 | 31.356 | 118 | 76 | 1 | 89 | 206 | 25 | 137 | 1.40e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07870.t1 | AT1G54170 | 45.383 | 639 | 272 | 17 | 42 | 667 | 11 | 585 | 1.32e-133 | 405 |
| MS.gene07870.t1 | AT3G14010 | 43.269 | 624 | 268 | 21 | 71 | 666 | 37 | 602 | 1.57e-131 | 400 |
| MS.gene07870.t1 | AT3G14010 | 43.109 | 624 | 269 | 20 | 71 | 666 | 29 | 594 | 1.84e-131 | 400 |
| MS.gene07870.t1 | AT3G14010 | 43.109 | 624 | 269 | 20 | 71 | 666 | 29 | 594 | 1.84e-131 | 400 |
| MS.gene07870.t1 | AT3G14010 | 43.109 | 624 | 269 | 20 | 71 | 666 | 29 | 594 | 1.84e-131 | 400 |
| MS.gene07870.t1 | AT3G14010 | 44.097 | 576 | 254 | 16 | 71 | 637 | 29 | 545 | 3.99e-130 | 395 |
| MS.gene07870.t1 | AT5G54920 | 39.583 | 96 | 52 | 2 | 89 | 184 | 25 | 114 | 1.39e-13 | 74.3 |
| MS.gene07870.t1 | AT5G54920 | 39.583 | 96 | 52 | 2 | 89 | 184 | 25 | 114 | 1.56e-13 | 73.9 |
| MS.gene07870.t1 | AT4G26990 | 40.698 | 86 | 46 | 1 | 91 | 176 | 23 | 103 | 1.88e-11 | 67.4 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56886 | gene | 8806 | 17858 | 8806 | ID=MS.gene07870 |
| 56886 | mRNA | 8806 | 17858 | 8806 | ID=MS.gene07870.t1;Parent=MS.gene07870 |
| 56886 | exon | 17796 | 17858 | 17796 | ID=MS.gene07870.t1.exon1;Parent=MS.gene07870.t1 |
| 56886 | CDS | 17796 | 17858 | 17796 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 17310 | 17463 | 17310 | ID=MS.gene07870.t1.exon2;Parent=MS.gene07870.t1 |
| 56886 | CDS | 17310 | 17463 | 17310 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 17075 | 17236 | 17075 | ID=MS.gene07870.t1.exon3;Parent=MS.gene07870.t1 |
| 56886 | CDS | 17075 | 17236 | 17075 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 16032 | 16168 | 16032 | ID=MS.gene07870.t1.exon4;Parent=MS.gene07870.t1 |
| 56886 | CDS | 16032 | 16168 | 16032 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 15639 | 15829 | 15639 | ID=MS.gene07870.t1.exon5;Parent=MS.gene07870.t1 |
| 56886 | CDS | 15639 | 15829 | 15639 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 13617 | 13800 | 13617 | ID=MS.gene07870.t1.exon6;Parent=MS.gene07870.t1 |
| 56886 | CDS | 13617 | 13800 | 13617 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 13284 | 13517 | 13284 | ID=MS.gene07870.t1.exon7;Parent=MS.gene07870.t1 |
| 56886 | CDS | 13284 | 13517 | 13284 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 10891 | 11006 | 10891 | ID=MS.gene07870.t1.exon8;Parent=MS.gene07870.t1 |
| 56886 | CDS | 10891 | 11006 | 10891 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 10668 | 10734 | 10668 | ID=MS.gene07870.t1.exon9;Parent=MS.gene07870.t1 |
| 56886 | CDS | 10668 | 10734 | 10668 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 10517 | 10550 | 10517 | ID=MS.gene07870.t1.exon10;Parent=MS.gene07870.t1 |
| 56886 | CDS | 10517 | 10550 | 10517 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 9918 | 10249 | 9918 | ID=MS.gene07870.t1.exon11;Parent=MS.gene07870.t1 |
| 56886 | CDS | 9918 | 10249 | 9918 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 9646 | 9792 | 9646 | ID=MS.gene07870.t1.exon12;Parent=MS.gene07870.t1 |
| 56886 | CDS | 9646 | 9792 | 9646 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 9474 | 9569 | 9474 | ID=MS.gene07870.t1.exon13;Parent=MS.gene07870.t1 |
| 56886 | CDS | 9474 | 9569 | 9474 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 9318 | 9377 | 9318 | ID=MS.gene07870.t1.exon14;Parent=MS.gene07870.t1 |
| 56886 | CDS | 9318 | 9377 | 9318 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| 56886 | exon | 8806 | 8835 | 8806 | ID=MS.gene07870.t1.exon15;Parent=MS.gene07870.t1 |
| 56886 | CDS | 8806 | 8835 | 8806 | ID=cds.MS.gene07870.t1;Parent=MS.gene07870.t1 |
| Gene Sequence |
| Protein sequence |
