AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059026


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059026.t1 MTR_1g069255 95.213 188 7 2 1 187 1 187 1.25e-109 311
MS.gene059026.t1 MTR_3g077570 50.000 96 47 1 87 182 22 116 2.86e-26 97.4
MS.gene059026.t1 MTR_7g035245 52.083 96 45 1 87 182 7 101 8.40e-26 95.9
MS.gene059026.t1 MTR_3g077560 47.000 100 50 2 87 184 25 123 3.36e-25 95.1
MS.gene059026.t1 MTR_2g038560 40.385 104 61 1 74 177 63 165 2.98e-23 91.3
MS.gene059026.t1 MTR_2g038560 40.385 104 61 1 74 177 19 121 3.15e-23 90.1
MS.gene059026.t1 MTR_2g038560 40.385 104 61 1 74 177 60 162 3.61e-23 90.9
MS.gene059026.t1 MTR_5g021090 42.391 92 52 1 86 177 36 126 1.96e-20 82.8
MS.gene059026.t1 MTR_4g119050 39.000 100 59 2 84 182 2 100 2.50e-16 71.2
MS.gene059026.t1 MTR_4g119030 39.000 100 59 2 84 182 2 100 2.50e-16 71.2
MS.gene059026.t1 MTR_4g119040 39.000 100 59 2 84 182 2 100 2.50e-16 71.2
MS.gene059026.t1 MTR_7g108200 36.170 94 59 1 84 177 2 94 1.65e-15 69.3
MS.gene059026.t1 MTR_1g088905 37.374 99 61 1 84 182 2 99 2.40e-15 68.6
MS.gene059026.t1 MTR_7g022690 39.000 100 59 2 84 182 31 129 4.97e-15 68.6
MS.gene059026.t1 MTR_1g088910 34.343 99 64 1 84 182 2 99 4.99e-15 67.8
MS.gene059026.t1 MTR_7g022550 38.000 100 60 2 84 182 31 129 6.34e-15 68.6
MS.gene059026.t1 MTR_7g108260 41.573 89 51 1 94 182 12 99 1.05e-14 67.0
MS.gene059026.t1 MTR_2g019900 36.364 99 62 1 84 182 2 99 1.28e-14 67.0
MS.gene059026.t1 MTR_7g026770 41.000 100 57 2 84 182 23 121 1.44e-14 70.5
MS.gene059026.t1 MTR_1g088925 32.979 94 62 1 84 177 2 94 1.27e-13 64.3
MS.gene059026.t1 MTR_2g019950 36.364 99 62 1 84 182 2 99 1.37e-13 64.3
MS.gene059026.t1 MTR_1g088920 32.979 94 62 1 84 177 2 94 1.77e-13 63.9
MS.gene059026.t1 MTR_7g022710 37.000 100 61 2 84 182 31 129 2.63e-13 64.3
MS.gene059026.t1 MTR_7g108250 35.354 99 63 1 84 182 2 99 5.19e-13 62.8
MS.gene059026.t1 MTR_7g108220 34.000 100 64 2 84 182 2 100 3.68e-12 60.5
MS.gene059026.t1 MTR_7g108210 34.000 100 64 2 84 182 2 100 2.00e-11 58.5
MS.gene059026.t1 MTR_1g088895 32.292 96 64 1 85 180 3 97 4.02e-11 57.8
MS.gene059026.t1 MTR_2g090755 35.000 100 65 0 83 182 38 137 8.74e-11 57.8
MS.gene059026.t1 MTR_2g048970 33.981 103 63 2 84 182 29 130 9.75e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059026.t1 AT4G28730 73.832 107 28 0 78 184 65 171 2.06e-60 186
MS.gene059026.t1 AT2G20270 70.874 103 30 0 82 184 74 176 2.99e-52 165
MS.gene059026.t1 AT2G20270 56.154 130 30 1 82 184 74 203 6.78e-46 150
MS.gene059026.t1 AT4G28730 75.000 76 19 0 78 153 65 140 4.83e-42 138
MS.gene059026.t1 AT5G63030 50.000 96 47 1 87 182 23 117 5.29e-25 94.4
MS.gene059026.t1 AT5G20500 40.476 126 60 3 60 185 21 131 8.53e-25 94.4
MS.gene059026.t1 AT5G40370 50.000 96 47 1 87 182 7 101 2.32e-24 92.4
MS.gene059026.t1 AT5G40370 50.000 86 42 1 97 182 42 126 2.95e-20 82.4
MS.gene059026.t1 AT1G77370 39.785 93 55 1 86 178 37 128 9.63e-20 80.9
MS.gene059026.t1 AT2G47870 35.789 95 59 2 84 177 2 95 8.94e-19 77.8
MS.gene059026.t1 AT1G77370 32.203 118 55 1 86 178 37 154 8.10e-17 73.9
MS.gene059026.t1 AT3G62950 34.000 100 64 2 84 182 2 100 2.23e-16 71.6
MS.gene059026.t1 AT5G18600 37.374 99 61 1 84 182 2 99 1.13e-15 69.7
MS.gene059026.t1 AT4G15700 35.354 99 63 1 84 182 2 99 3.30e-14 65.9
MS.gene059026.t1 AT3G21460 34.021 97 63 1 84 180 2 97 1.16e-13 64.3
MS.gene059026.t1 AT1G03020 36.364 99 62 1 84 182 2 99 1.21e-13 64.3
MS.gene059026.t1 AT4G15690 34.343 99 64 1 84 182 2 99 2.68e-13 63.5
MS.gene059026.t1 AT5G14070 34.286 105 60 2 86 182 34 137 3.88e-13 63.9
MS.gene059026.t1 AT4G15660 36.471 85 53 1 84 168 2 85 9.01e-13 62.0
MS.gene059026.t1 AT3G62930 34.343 99 64 1 84 182 2 99 1.51e-12 61.6
MS.gene059026.t1 AT4G15680 32.323 99 66 1 84 182 2 99 1.59e-12 61.2
MS.gene059026.t1 AT4G15670 35.294 85 54 1 84 168 2 85 1.94e-12 61.2
MS.gene059026.t1 AT3G62960 34.483 87 56 1 91 177 9 94 8.64e-12 59.3
MS.gene059026.t1 AT2G30540 35.632 87 55 1 91 177 9 94 3.34e-11 57.8

Find 49 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACAATTGCAGAAGTTAT+TGG 0.236945 1.2:-52069305 MS.gene059026:CDS
ACTGTCCCAAATGTCTTTAT+TGG 0.269990 1.2:-52069262 MS.gene059026:intron
TGCTTACCAATAAAGACATT+TGG 0.309384 1.2:+52069256 None:intergenic
GGTCATTGAATTGGACGAAT+TGG 0.311156 1.2:-52069433 MS.gene059026:CDS
TCTTCTTCTTCTCCTTCTTT+CGG 0.329684 1.2:-52069582 MS.gene059026:CDS
TCAACCATTGGTCATTGAAT+TGG 0.339849 1.2:-52069442 MS.gene059026:CDS
ATGGGTGAAGGAGTGGAAAT+GGG 0.349172 1.2:+52069687 None:intergenic
GATGGGTGAAGGAGTGGAAA+TGG 0.372694 1.2:+52069686 None:intergenic
GCTTACCAATAAAGACATTT+GGG 0.379345 1.2:+52069257 None:intergenic
GATTTAGAATAAACAACAAC+AGG 0.399918 1.2:+52069516 None:intergenic
TCCAATAACTTCTGCAATTG+TGG 0.404965 1.2:+52069304 None:intergenic
GTCATTGAATTGGACGAATT+GGG 0.409560 1.2:-52069432 MS.gene059026:intron
GGTGTAGAAAGTGAAAATTT+TGG 0.420415 1.2:+52069710 None:intergenic
AGACATTTGGGACAGTGTAT+TGG 0.422317 1.2:+52069269 None:intergenic
CAACACATTGGTGGCTGTAC+AGG 0.429960 1.2:-52067337 MS.gene059026:intron
TTGTTGTTTATTCTAAATCC+TGG 0.449421 1.2:-52069512 MS.gene059026:CDS
GTGAATAATGGCTTCATCAA+TGG 0.451455 1.2:-52069802 None:intergenic
CAGATACACTTAAGCTGTAC+AGG 0.473714 1.2:-52066838 MS.gene059026:CDS
TCGAGACGAGAGCCGAAAGA+AGG 0.476392 1.2:+52069570 None:intergenic
CTTCTGATAGCAGAGTTTCA+AGG 0.477656 1.2:+52066807 None:intergenic
TGATGCATTGGTGATGATGA+TGG 0.500169 1.2:+52069668 None:intergenic
GGAGAAGAAGAAGAGGGAGA+AGG 0.503916 1.2:+52069591 None:intergenic
AGACATGGCTCGAGGGAAAG+TGG 0.505541 1.2:+52069632 None:intergenic
TTCTGCAATTGTGGACCTTG+TGG 0.506196 1.2:+52069313 None:intergenic
CTCAGAGCAATAAGAGCACC+AGG 0.519483 1.2:+52069494 None:intergenic
AAGTTATTGGAAAGAATCAC+TGG 0.522538 1.2:-52069292 MS.gene059026:CDS
GAAAGAAGGAGAAGAAGAAG+AGG 0.525353 1.2:+52069584 None:intergenic
TGGGTGAAGGAGTGGAAATG+GGG 0.529038 1.2:+52069688 None:intergenic
ATTGCAGGTGGCCAACACAT+TGG 0.560668 1.2:-52067349 MS.gene059026:intron
TGCGCGGCGTGATGATGCAT+TGG 0.565062 1.2:+52069656 None:intergenic
GATGATGATGGGTGAAGGAG+TGG 0.565535 1.2:+52069680 None:intergenic
GACATGGCTCGAGGGAAAGT+GGG 0.576041 1.2:+52069633 None:intergenic
GAAACTCGGTACTCAACCAT+TGG 0.578067 1.2:-52069454 MS.gene059026:CDS
TCGTCCAATTCAATGACCAA+TGG 0.582756 1.2:+52069438 None:intergenic
CTCGAGGGAAAGTGGGTGCG+CGG 0.586414 1.2:+52069640 None:intergenic
AAAGAAGGAGAAGAAGAAGA+GGG 0.596305 1.2:+52069585 None:intergenic
GGGTGAAGGAGTGGAAATGG+GGG 0.597848 1.2:+52069689 None:intergenic
ACACTTAAGCTGTACAGGAA+AGG 0.605615 1.2:-52066833 MS.gene059026:CDS
AAATCCTTGTTCAAGAAACT+CGG 0.607350 1.2:-52069468 MS.gene059026:CDS
AGTACCGAGTTTCTTGAACA+AGG 0.611087 1.2:+52069464 None:intergenic
GCAGGTGGCCAACACATTGG+TGG 0.613270 1.2:-52067346 MS.gene059026:intron
AAGAAGAAGACATGGCTCGA+GGG 0.614920 1.2:+52069625 None:intergenic
GAAGAAGAAGACATGGCTCG+AGG 0.618686 1.2:+52069624 None:intergenic
TTTCTGTGTTTAGGTCCACA+AGG 0.618825 1.2:-52069328 MS.gene059026:intron
CTGGTGCTCTTATTGCTCTG+AGG 0.633125 1.2:-52069493 MS.gene059026:CDS
GATGCATTGGTGATGATGAT+GGG 0.639376 1.2:+52069669 None:intergenic
TTGGTGATGATGATGGGTGA+AGG 0.644107 1.2:+52069675 None:intergenic
CTGTACAGCCACCAATGTGT+TGG 0.647816 1.2:+52067338 None:intergenic
ATTTAGAATAAACAACAACA+GGG 0.680559 1.2:+52069517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAAACTTTCTTTTTT+TGG - chr1.2:52068963-52068982 MS.gene059026:intron 10.0%
!! AAAAGATAAAATTAAATGCA+GGG + chr1.2:52069169-52069188 None:intergenic 15.0%
!! AATAAATTGAAAAAAGCTTA+AGG - chr1.2:52067709-52067728 MS.gene059026:intron 15.0%
!! CAAATATAGTAATATTACAT+TGG - chr1.2:52068895-52068914 MS.gene059026:intron 15.0%
!! TGAAAATTATACGATATATA+GGG - chr1.2:52067911-52067930 MS.gene059026:intron 15.0%
!! TTGAAAATTATACGATATAT+AGG - chr1.2:52067910-52067929 MS.gene059026:intron 15.0%
!! TTGGATAAAAAAGTTTAATT+AGG - chr1.2:52067589-52067608 MS.gene059026:intron 15.0%
!!! ATTTAAAATTTAGGTTTTTG+TGG + chr1.2:52068266-52068285 None:intergenic 15.0%
!! AAGAATTGAAATACTATATC+AGG + chr1.2:52068805-52068824 None:intergenic 20.0%
!! AATATAAGGGTAATGTTAAT+TGG - chr1.2:52068847-52068866 MS.gene059026:intron 20.0%
!! AATGATTGATTATTTAACTG+GGG - chr1.2:52069286-52069305 MS.gene059026:CDS 20.0%
!! CAAAAGATAAAATTAAATGC+AGG + chr1.2:52069170-52069189 None:intergenic 20.0%
!! GAAATCCAACTTAAAAAATT+AGG - chr1.2:52068735-52068754 MS.gene059026:intron 20.0%
!! GAATGATTGATTATTTAACT+GGG - chr1.2:52069285-52069304 MS.gene059026:CDS 20.0%
!! TAGGATTAATATTTGACAAA+AGG + chr1.2:52067545-52067564 None:intergenic 20.0%
!! TGAATGATTGATTATTTAAC+TGG - chr1.2:52069284-52069303 MS.gene059026:CDS 20.0%
!! TTATATTAATCCATAGTTCA+AGG + chr1.2:52068834-52068853 None:intergenic 20.0%
!!! ATTTAGAATAAACAACAACA+GGG + chr1.2:52067062-52067081 None:intergenic 20.0%
!!! TAAACTTTTTTATCCAAACA+AGG + chr1.2:52067586-52067605 None:intergenic 20.0%
!!! TGAACTATGGATTAATATAA+GGG - chr1.2:52068834-52068853 MS.gene059026:intron 20.0%
!!! TTGAACTATGGATTAATATA+AGG - chr1.2:52068833-52068852 MS.gene059026:intron 20.0%
!!! TTTCACTGTTAAGATTTTTA+TGG + chr1.2:52069672-52069691 None:intergenic 20.0%
! AAAACATTGCATTGGAAATT+AGG + chr1.2:52068518-52068537 None:intergenic 25.0%
! AAAATAATGAGGGAAACAAA+AGG + chr1.2:52069710-52069729 None:intergenic 25.0%
! AGCAATAATTGAGGTTAATT+AGG + chr1.2:52067183-52067202 None:intergenic 25.0%
! ATCCATGAATAAATTTGCAA+TGG + chr1.2:52067208-52067227 None:intergenic 25.0%
! ATGATTGATTATTTAACTGG+GGG - chr1.2:52069287-52069306 MS.gene059026:CDS 25.0%
! GATATATAAGTAGTACTTCT+GGG - chr1.2:52067933-52067952 MS.gene059026:intron 25.0%
! GCAATAATTGAGGTTAATTA+GGG + chr1.2:52067182-52067201 None:intergenic 25.0%
! TAACCATTTAAATCCTCTTA+TGG - chr1.2:52069499-52069518 MS.gene059026:CDS 25.0%
! TGACAAATATCATTTCTGTT+TGG - chr1.2:52069608-52069627 MS.gene059026:CDS 25.0%
! TGATTAGGTTATCATAACTT+AGG - chr1.2:52067827-52067846 MS.gene059026:intron 25.0%
! TGCACAAGTAAAAATAATGA+GGG + chr1.2:52069720-52069739 None:intergenic 25.0%
! TTAATCCTAATTTAAACCCA+AGG - chr1.2:52067556-52067575 MS.gene059026:intron 25.0%
! TTAGAAATCATTAGATCCAA+AGG - chr1.2:52068432-52068451 MS.gene059026:intron 25.0%
!! ACGTGAAGCATTTAAAATTT+AGG + chr1.2:52068275-52068294 None:intergenic 25.0%
!! CTTAATTGATTTCTGTGTTT+AGG - chr1.2:52067239-52067258 MS.gene059026:intron 25.0%
!! GATTTAGAATAAACAACAAC+AGG + chr1.2:52067063-52067082 None:intergenic 25.0%
!!! ATATTTTAGTCATGCTGATT+AGG - chr1.2:52067812-52067831 MS.gene059026:intron 25.0%
!!! TTGTTGTTTATTCTAAATCC+TGG - chr1.2:52067064-52067083 MS.gene059026:intron 25.0%
AAATCCTTGTTCAAGAAACT+CGG - chr1.2:52067108-52067127 MS.gene059026:intron 30.0%
AAGCTGTTGCTAAAAATAAG+GGG - chr1.2:52069789-52069808 MS.gene059026:CDS 30.0%
AAGTTATCATGTAGAGCTTA+TGG - chr1.2:52067685-52067704 MS.gene059026:intron 30.0%
AAGTTATTGGAAAGAATCAC+TGG - chr1.2:52067284-52067303 MS.gene059026:intron 30.0%
ACTCCAATACATGTAATTGT+AGG - chr1.2:52068705-52068724 MS.gene059026:intron 30.0%
AGAAGCTGTTGCTAAAAATA+AGG - chr1.2:52069787-52069806 MS.gene059026:CDS 30.0%
AGAGGATTTAAATGGTTAAC+TGG + chr1.2:52069497-52069516 None:intergenic 30.0%
ATAGCAAGAGAAATTTCATC+TGG - chr1.2:52068083-52068102 MS.gene059026:intron 30.0%
ATGAAGAAGAAGAAGAAGAA+TGG + chr1.2:52066837-52066856 None:intergenic 30.0%
ATGATATTTGTCACAATGAG+AGG + chr1.2:52069601-52069620 None:intergenic 30.0%
ATGCAGACAATTTACATTTG+CGG + chr1.2:52069419-52069438 None:intergenic 30.0%
ATTGAAAAAAGCTTAAGGAC+AGG - chr1.2:52067714-52067733 MS.gene059026:intron 30.0%
CTGCAATGAAGAAAACTTTA+GGG + chr1.2:52069214-52069233 None:intergenic 30.0%
CTGCACAAGTAAAAATAATG+AGG + chr1.2:52069721-52069740 None:intergenic 30.0%
GAAGCTGTTGCTAAAAATAA+GGG - chr1.2:52069788-52069807 MS.gene059026:CDS 30.0%
GATATACGTTCTTTACAGAA+AGG + chr1.2:52068679-52068698 None:intergenic 30.0%
GCTTACCAATAAAGACATTT+GGG + chr1.2:52067322-52067341 None:intergenic 30.0%
GGATATATAAGTAGTACTTC+TGG - chr1.2:52067932-52067951 MS.gene059026:intron 30.0%
GTTGTCTAAAAACATTGCAT+TGG + chr1.2:52068526-52068545 None:intergenic 30.0%
TAGCAAGAGAAATTTCATCT+GGG - chr1.2:52068084-52068103 MS.gene059026:intron 30.0%
TATTCCATCATCTTATCTAC+TGG + chr1.2:52067766-52067785 None:intergenic 30.0%
TGATAAGCGCTTATACTATA+TGG + chr1.2:52067616-52067635 None:intergenic 30.0%
TGATTGAGAGTGGTTATATT+AGG - chr1.2:52067877-52067896 MS.gene059026:intron 30.0%
TGATTGATTATTTAACTGGG+GGG - chr1.2:52069288-52069307 MS.gene059026:CDS 30.0%
TGCAAACATAGAAATGAAGA+GGG + chr1.2:52068568-52068587 None:intergenic 30.0%
TGCCATTGCAAATTTATTCA+TGG - chr1.2:52067203-52067222 MS.gene059026:intron 30.0%
TGCTTACCAATAAAGACATT+TGG + chr1.2:52067323-52067342 None:intergenic 30.0%
TTACGTTTACATCCAATGAT+GGG + chr1.2:52067454-52067473 None:intergenic 30.0%
TTAGACAACTAAATTTCCCA+GGG - chr1.2:52068537-52068556 MS.gene059026:intron 30.0%
TTGCAAACATAGAAATGAAG+AGG + chr1.2:52068569-52068588 None:intergenic 30.0%
TTTACACATATATGCTTTGC+CGG - chr1.2:52067395-52067414 MS.gene059026:intron 30.0%
TTTACGTTTACATCCAATGA+TGG + chr1.2:52067455-52067474 None:intergenic 30.0%
TTTAGACAACTAAATTTCCC+AGG - chr1.2:52068536-52068555 MS.gene059026:intron 30.0%
! AGGAGGAACTTTTGAATATT+TGG - chr1.2:52068208-52068227 MS.gene059026:intron 30.0%
! ATTGAATCTGAAACACATAC+CGG + chr1.2:52067417-52067436 None:intergenic 30.0%
! GGTGTAGAAAGTGAAAATTT+TGG + chr1.2:52066869-52066888 None:intergenic 30.0%
! TACATGCATAACTGATAATG+TGG + chr1.2:52069562-52069581 None:intergenic 30.0%
!! AGTGAAAATTTTGGAGATAG+AGG + chr1.2:52066860-52066879 None:intergenic 30.0%
!! GTAACAGACTTATGTTGTTT+TGG + chr1.2:52069147-52069166 None:intergenic 30.0%
!!! AAACTCTTTTGAAACAACCA+CGG - chr1.2:52068165-52068184 MS.gene059026:intron 30.0%
!!! TGTGGCCTAATTTTTTAAGT+TGG + chr1.2:52068743-52068762 None:intergenic 30.0%
AAACTTTCTGCGATTGTGAA+TGG + chr1.2:52068770-52068789 None:intergenic 35.0%
AAAGAAGGAGAAGAAGAAGA+GGG + chr1.2:52066994-52067013 None:intergenic 35.0%
AATGGCAATGACAATGACAA+TGG + chr1.2:52068479-52068498 None:intergenic 35.0%
ACATTGCATTGGAAATTAGG+TGG + chr1.2:52068515-52068534 None:intergenic 35.0%
ACTGTCCCAAATGTCTTTAT+TGG - chr1.2:52067314-52067333 MS.gene059026:intron 35.0%
ATTGATTATTTAACTGGGGG+GGG - chr1.2:52069290-52069309 MS.gene059026:CDS 35.0%
CAACACTTGTATCAAACTCT+TGG + chr1.2:52068401-52068420 None:intergenic 35.0%
CAGCCATAAGAGGATTTAAA+TGG + chr1.2:52069505-52069524 None:intergenic 35.0%
CATTTAAATCCTCTTATGGC+TGG - chr1.2:52069503-52069522 MS.gene059026:CDS 35.0%
CCTGCAATGAAGAAAACTTT+AGG + chr1.2:52069215-52069234 None:intergenic 35.0%
GAAACAAAAGGAGAAGACAA+AGG + chr1.2:52069698-52069717 None:intergenic 35.0%
GAGCCTACAATTACATGTAT+TGG + chr1.2:52068711-52068730 None:intergenic 35.0%
GATCTCTACTATTTGCACAT+GGG - chr1.2:52068609-52068628 MS.gene059026:intron 35.0%
GATTGATTATTTAACTGGGG+GGG - chr1.2:52069289-52069308 MS.gene059026:CDS 35.0%
GTCATTGAATTGGACGAATT+GGG - chr1.2:52067144-52067163 MS.gene059026:intron 35.0%
GTGTTCCTTGGGTTTAAATT+AGG + chr1.2:52067564-52067583 None:intergenic 35.0%
TAATCCATAGTTCAAGGCAT+GGG + chr1.2:52068828-52068847 None:intergenic 35.0%
TATGCCAGTAGATAAGATGA+TGG - chr1.2:52067759-52067778 MS.gene059026:intron 35.0%
TCAACCATTGGTCATTGAAT+TGG - chr1.2:52067134-52067153 MS.gene059026:intron 35.0%
TCATTGTTAGCAAATAGCTG+AGG - chr1.2:52068297-52068316 MS.gene059026:intron 35.0%
TCCAATAACTTCTGCAATTG+TGG + chr1.2:52067275-52067294 None:intergenic 35.0%
TCCACAATTGCAGAAGTTAT+TGG - chr1.2:52067271-52067290 MS.gene059026:intron 35.0%
TCCTCCTTAACAAACTCATT+GGG + chr1.2:52068195-52068214 None:intergenic 35.0%
TCTTCTTCTTCTCCTTCTTT+CGG - chr1.2:52066994-52067013 MS.gene059026:intron 35.0%
TGAAGAAGAAGAAGAAGACA+TGG + chr1.2:52066962-52066981 None:intergenic 35.0%
TGAGAGTGGTTATATTAGGT+AGG - chr1.2:52067881-52067900 MS.gene059026:intron 35.0%
TTAATCCATAGTTCAAGGCA+TGG + chr1.2:52068829-52068848 None:intergenic 35.0%
TTCCTCCTTAACAAACTCAT+TGG + chr1.2:52068196-52068215 None:intergenic 35.0%
! AAAGTTTTCTTCATTGCAGG+TGG - chr1.2:52069215-52069234 MS.gene059026:intron 35.0%
! AATCATTCAACAAGAGCACA+AGG + chr1.2:52069273-52069292 None:intergenic 35.0%
! CCTAAAGTTTTCTTCATTGC+AGG - chr1.2:52069212-52069231 MS.gene059026:intron 35.0%
! TATCGCGATAATTTGTCTCA+CGG - chr1.2:52069468-52069487 MS.gene059026:CDS 35.0%
! TGATACAAGTGTTGCATTGA+AGG - chr1.2:52068407-52068426 MS.gene059026:intron 35.0%
! TTAACATTTTCTCCTTCTCC+CGG + chr1.2:52069068-52069087 None:intergenic 35.0%
!! GTTTCCCAATGAGTTTGTTA+AGG - chr1.2:52068188-52068207 MS.gene059026:intron 35.0%
!! TTGAGAAACGGTGTTTTTGA+TGG + chr1.2:52067037-52067056 None:intergenic 35.0%
!!! AACAACAGGGTTTTGAGAAA+CGG + chr1.2:52067049-52067068 None:intergenic 35.0%
!!! AACTCTTTTGAAACAACCAC+GGG - chr1.2:52068166-52068185 MS.gene059026:intron 35.0%
AAACTCTTGGAGGATACTTG+GGG + chr1.2:52068388-52068407 None:intergenic 40.0%
AAATTAGGTGGCAATGGCAA+TGG + chr1.2:52068503-52068522 None:intergenic 40.0%
ACACTTAAGCTGTACAGGAA+AGG - chr1.2:52069743-52069762 MS.gene059026:CDS 40.0%
ATGCATGTATGACGCTTTCA+TGG - chr1.2:52069573-52069592 MS.gene059026:CDS 40.0%
CAAACTCTTGGAGGATACTT+GGG + chr1.2:52068389-52068408 None:intergenic 40.0%
CACTTGTATCAAACTCTTGG+AGG + chr1.2:52068398-52068417 None:intergenic 40.0%
CAGATACACTTAAGCTGTAC+AGG - chr1.2:52069738-52069757 MS.gene059026:CDS 40.0%
CATTGGAAATTAGGTGGCAA+TGG + chr1.2:52068509-52068528 None:intergenic 40.0%
CGATCTCTACTATTTGCACA+TGG - chr1.2:52068608-52068627 MS.gene059026:intron 40.0%
CTTCTGATAGCAGAGTTTCA+AGG + chr1.2:52069772-52069791 None:intergenic 40.0%
GAAAGAAGGAGAAGAAGAAG+AGG + chr1.2:52066995-52067014 None:intergenic 40.0%
GAATAATGCTTCAGTCACTG+AGG + chr1.2:52069349-52069368 None:intergenic 40.0%
GCAATGGCAAGCAATAATTG+AGG + chr1.2:52067192-52067211 None:intergenic 40.0%
GGTCATTGAATTGGACGAAT+TGG - chr1.2:52067143-52067162 MS.gene059026:intron 40.0%
TCAAACTCTTGGAGGATACT+TGG + chr1.2:52068390-52068409 None:intergenic 40.0%
TCGTCCAATTCAATGACCAA+TGG + chr1.2:52067141-52067160 None:intergenic 40.0%
TGCTAGATGAACTTCTCCTT+TGG + chr1.2:52068451-52068470 None:intergenic 40.0%
TTTATGGAACTGTGCAACGT+TGG + chr1.2:52069656-52069675 None:intergenic 40.0%
TTTCTGTGTTTAGGTCCACA+AGG - chr1.2:52067248-52067267 MS.gene059026:intron 40.0%
TTTGTGCCAGAAAAGTGAGA+GGG - chr1.2:52068015-52068034 MS.gene059026:intron 40.0%
! AAGTAGTACTTCTGGGTTGA+AGG - chr1.2:52067940-52067959 MS.gene059026:intron 40.0%
! AGACATTTGGGACAGTGTAT+TGG + chr1.2:52067310-52067329 None:intergenic 40.0%
! AGTACCGAGTTTCTTGAACA+AGG + chr1.2:52067115-52067134 None:intergenic 40.0%
! ATCCAAACAAGGTGTTCCTT+GGG + chr1.2:52067575-52067594 None:intergenic 40.0%
! TATCCAAACAAGGTGTTCCT+TGG + chr1.2:52067576-52067595 None:intergenic 40.0%
! TCCTCAATGGCTTTTCCTTA+GGG + chr1.2:52068354-52068373 None:intergenic 40.0%
! TGGTGACTTTGAGAACGATT+GGG - chr1.2:52068228-52068247 MS.gene059026:intron 40.0%
! TGGTTTTTGTTGAAGTAGCG+AGG + chr1.2:52066817-52066836 None:intergenic 40.0%
! TTAACATACTGGTTGGGCTA+CGG - chr1.2:52069016-52069035 MS.gene059026:intron 40.0%
! TTGGTGACTTTGAGAACGAT+TGG - chr1.2:52068227-52068246 MS.gene059026:intron 40.0%
!! GATGCATTGGTGATGATGAT+GGG + chr1.2:52066910-52066929 None:intergenic 40.0%
!! TCCCAATGAGTTTGTTAAGG+AGG - chr1.2:52068191-52068210 MS.gene059026:intron 40.0%
!! TGATGCATTGGTGATGATGA+TGG + chr1.2:52066911-52066930 None:intergenic 40.0%
AAATGAAGAGGGATTCACCC+TGG + chr1.2:52068557-52068576 None:intergenic 45.0%
AACCCAAGGAACACCTTGTT+TGG - chr1.2:52067570-52067589 MS.gene059026:intron 45.0%
AAGAAGAAGACATGGCTCGA+GGG + chr1.2:52066954-52066973 None:intergenic 45.0%
AAGACAACGGGGTTCAAAAC+CGG - chr1.2:52069046-52069065 MS.gene059026:intron 45.0%
AATGAAGAGGGATTCACCCT+GGG + chr1.2:52068556-52068575 None:intergenic 45.0%
ACCCTAAGGAAAAGCCATTG+AGG - chr1.2:52068350-52068369 MS.gene059026:intron 45.0%
AGCCCAACCAGTATGTTAAC+CGG + chr1.2:52069015-52069034 None:intergenic 45.0%
ATGGGTGAAGGAGTGGAAAT+GGG + chr1.2:52066892-52066911 None:intergenic 45.0%
CAGACTTCTGTGATTGAGAG+TGG - chr1.2:52067867-52067886 MS.gene059026:intron 45.0%
CTGGCACAAACACAGATTCT+TGG + chr1.2:52068005-52068024 None:intergenic 45.0%
GAAACTCGGTACTCAACCAT+TGG - chr1.2:52067122-52067141 MS.gene059026:intron 45.0%
GGCTCAAAATGTCTCCTCAA+TGG + chr1.2:52068367-52068386 None:intergenic 45.0%
GTTTGTGCCAGAAAAGTGAG+AGG - chr1.2:52068014-52068033 MS.gene059026:intron 45.0%
TCTTCCCATGCCTTGAACTA+TGG - chr1.2:52068821-52068840 MS.gene059026:intron 45.0%
TTCTGCAATTGTGGACCTTG+TGG + chr1.2:52067266-52067285 None:intergenic 45.0%
TTGACGTGACAACCCATCAT+TGG - chr1.2:52067439-52067458 MS.gene059026:intron 45.0%
! CACCGGTTAACATACTGGTT+GGG - chr1.2:52069010-52069029 MS.gene059026:intron 45.0%
! CTACGGGTTGAAGAAGACAA+CGG - chr1.2:52069033-52069052 MS.gene059026:intron 45.0%
! CTATTTGCACATGGGTTGTG+AGG - chr1.2:52068617-52068636 MS.gene059026:intron 45.0%
! CTCCTCAATGGCTTTTCCTT+AGG + chr1.2:52068355-52068374 None:intergenic 45.0%
! GCATGTTTTCCAGCCATAAG+AGG + chr1.2:52069515-52069534 None:intergenic 45.0%
! GTAATGTTAATTGGTGCCCC+CGG - chr1.2:52068856-52068875 MS.gene059026:intron 45.0%
! TAACATACTGGTTGGGCTAC+GGG - chr1.2:52069017-52069036 MS.gene059026:intron 45.0%
! TAATGTTAATTGGTGCCCCC+GGG - chr1.2:52068857-52068876 MS.gene059026:intron 45.0%
! TACGGGTTGAAGAAGACAAC+GGG - chr1.2:52069034-52069053 MS.gene059026:intron 45.0%
!! TTCTCTCCCTCTCACTTTTC+TGG + chr1.2:52068024-52068043 None:intergenic 45.0%
!! TTGGTGATGATGATGGGTGA+AGG + chr1.2:52066904-52066923 None:intergenic 45.0%
!!! TATATTAGATTTTTTTTTAT+AGG + chr1.2:52069119-52069138 None:intergenic 5.0%
AGACAACGGGGTTCAAAACC+GGG - chr1.2:52069047-52069066 MS.gene059026:intron 50.0%
AGGAGACCTAGTAGCAGAAG+GGG - chr1.2:52068317-52068336 MS.gene059026:intron 50.0%
AGTAGCAGAAGGGGTTGTGA+GGG - chr1.2:52068326-52068345 MS.gene059026:intron 50.0%
ATTGCAGGTGGCCAACACAT+TGG - chr1.2:52069227-52069246 MS.gene059026:intron 50.0%
CAAACTCATTGGGAAACCCG+TGG + chr1.2:52068185-52068204 None:intergenic 50.0%
CTGGTGCTCTTATTGCTCTG+AGG - chr1.2:52067083-52067102 MS.gene059026:intron 50.0%
CTGTACAGCCACCAATGTGT+TGG + chr1.2:52069241-52069260 None:intergenic 50.0%
GAAGAAGAAGACATGGCTCG+AGG + chr1.2:52066955-52066974 None:intergenic 50.0%
GAGGAGACCTAGTAGCAGAA+GGG - chr1.2:52068316-52068335 MS.gene059026:intron 50.0%
GATGGGTGAAGGAGTGGAAA+TGG + chr1.2:52066893-52066912 None:intergenic 50.0%
GCGATTGTGAATGGTGAGTG+TGG + chr1.2:52068761-52068780 None:intergenic 50.0%
GGAGAAGAAGAAGAGGGAGA+AGG + chr1.2:52066988-52067007 None:intergenic 50.0%
TAGTAGCAGAAGGGGTTGTG+AGG - chr1.2:52068325-52068344 MS.gene059026:intron 50.0%
TCACAACCCCTTCTGCTACT+AGG + chr1.2:52068326-52068345 None:intergenic 50.0%
TGAGGAGACCTAGTAGCAGA+AGG - chr1.2:52068315-52068334 MS.gene059026:intron 50.0%
TGGGTGAAGGAGTGGAAATG+GGG + chr1.2:52066891-52066910 None:intergenic 50.0%
! AATGTTAATTGGTGCCCCCG+GGG - chr1.2:52068858-52068877 MS.gene059026:intron 50.0%
! ACGGGTTGAAGAAGACAACG+GGG - chr1.2:52069035-52069054 MS.gene059026:intron 50.0%
! CAACACATTGGTGGCTGTAC+AGG - chr1.2:52069239-52069258 MS.gene059026:intron 50.0%
! GTACTTCTGGGTTGAAGGCA+TGG - chr1.2:52067945-52067964 MS.gene059026:intron 50.0%
!! CTCAGAGCAATAAGAGCACC+AGG + chr1.2:52067085-52067104 None:intergenic 50.0%
!! GATGATGATGGGTGAAGGAG+TGG + chr1.2:52066899-52066918 None:intergenic 50.0%
!! GCACCGGTTAACATACTGGT+TGG - chr1.2:52069009-52069028 MS.gene059026:intron 50.0%
AGACATGGCTCGAGGGAAAG+TGG + chr1.2:52066947-52066966 None:intergenic 55.0%
AGTATGTTAACCGGTGCCCC+CGG + chr1.2:52069006-52069025 None:intergenic 55.0%
GACATGGCTCGAGGGAAAGT+GGG + chr1.2:52066946-52066965 None:intergenic 55.0%
GGGTGAAGGAGTGGAAATGG+GGG + chr1.2:52066890-52066909 None:intergenic 55.0%
GGTGGCAATGGCAATGGCAA+TGG + chr1.2:52068497-52068516 None:intergenic 55.0%
TCGAGACGAGAGCCGAAAGA+AGG + chr1.2:52067009-52067028 None:intergenic 55.0%
TTGCTCCTTAACCAGTGCCC+CGG + chr1.2:52068878-52068897 None:intergenic 55.0%
CGGGGTTCAAAACCGGGAGA+AGG - chr1.2:52069053-52069072 MS.gene059026:intron 60.0%
GCAGGTGGCCAACACATTGG+TGG - chr1.2:52069230-52069249 MS.gene059026:intron 60.0%
GGGGTTGTGAGGGAACCCTA+AGG - chr1.2:52068336-52068355 MS.gene059026:intron 60.0%
GGTTTCCTTAACCCGTGCCC+CGG - chr1.2:52068984-52069003 MS.gene059026:intron 60.0%
GTATGTTAACCGGTGCCCCC+GGG + chr1.2:52069005-52069024 None:intergenic 60.0%
GTTTCCTTAACCCGTGCCCC+GGG - chr1.2:52068985-52069004 MS.gene059026:intron 60.0%
TATGTTAACCGGTGCCCCCG+GGG + chr1.2:52069004-52069023 None:intergenic 60.0%
TGCTCCTTAACCAGTGCCCC+GGG + chr1.2:52068877-52068896 None:intergenic 60.0%
TTTCCTTAACCCGTGCCCCG+GGG - chr1.2:52068986-52069005 MS.gene059026:intron 60.0%
! TGCGCGGCGTGATGATGCAT+TGG + chr1.2:52066923-52066942 None:intergenic 60.0%
!! GGGGGCACCGGTTAACATAC+TGG - chr1.2:52069005-52069024 MS.gene059026:intron 60.0%
CTCCTTAACCAGTGCCCCGG+GGG + chr1.2:52068875-52068894 None:intergenic 65.0%
CTCGAGGGAAAGTGGGTGCG+CGG + chr1.2:52066939-52066958 None:intergenic 65.0%
GCTCCTTAACCAGTGCCCCG+GGG + chr1.2:52068876-52068895 None:intergenic 65.0%
TTCCTTAACCCGTGCCCCGG+GGG - chr1.2:52068987-52069006 MS.gene059026:intron 65.0%
! AATTGGTGCCCCCGGGGCAC+TGG - chr1.2:52068864-52068883 MS.gene059026:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr1.2:52068870-52068889 MS.gene059026:intron 70.0%
TAACCGGTGCCCCCGGGGCA+CGG + chr1.2:52068999-52069018 None:intergenic 75.0%
! TGCCCCCGGGGCACGGGTTA+AGG + chr1.2:52068992-52069011 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+GGG + chr1.2:52068998-52069017 None:intergenic 80.0%
!! AACCCGTGCCCCGGGGGCAC+CGG - chr1.2:52068993-52069012 MS.gene059026:intron 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 52066781 52069817 52066781 ID=MS.gene059026
chr1.2 mRNA 52066781 52069817 52066781 ID=MS.gene059026.t1;Parent=MS.gene059026
chr1.2 exon 52069433 52069817 52069433 ID=MS.gene059026.t1.exon1;Parent=MS.gene059026.t1
chr1.2 CDS 52069433 52069817 52069433 ID=cds.MS.gene059026.t1;Parent=MS.gene059026.t1
chr1.2 exon 52069263 52069337 52069263 ID=MS.gene059026.t1.exon2;Parent=MS.gene059026.t1
chr1.2 CDS 52069263 52069337 52069263 ID=cds.MS.gene059026.t1;Parent=MS.gene059026.t1
chr1.2 exon 52067338 52067364 52067338 ID=MS.gene059026.t1.exon3;Parent=MS.gene059026.t1
chr1.2 CDS 52067338 52067364 52067338 ID=cds.MS.gene059026.t1;Parent=MS.gene059026.t1
chr1.2 exon 52066781 52066857 52066781 ID=MS.gene059026.t1.exon4;Parent=MS.gene059026.t1
chr1.2 CDS 52066781 52066857 52066781 ID=cds.MS.gene059026.t1;Parent=MS.gene059026.t1
Gene Sequence

>MS.gene059026

ATGGCTTCATCAATGGCGAACACTTTCACTCTTCCTCGCTACTTCAACAAAAACCATTCTTCTTCTTCTTCTTCATCCTCTATCTCCAAAATTTTCACTTTCTACACCCCCATTTCCACTCCTTCACCCATCATCATCACCAATGCATCATCACGCCGCGCACCCACTTTCCCTCGAGCCATGTCTTCTTCTTCTTCTTCATCTCCTTCTCCCTCTTCTTCTTCTCCTTCTTTCGGCTCTCGTCTCGAAGAAACCATCAAAAACACCGTTTCTCAAAACCCTGTTGTTGTTTATTCTAAATCCTGGTGCTCTTATTGCTCTGAGGTCAAATCCTTGTTCAAGAAACTCGGTACTCAACCATTGGTCATTGAATTGGACGAATTGGGTATTCAACTCAACCCTAATTAACCTCAATTATTGCTTGCCATTGCAAATTTATTCATGGATTTTGTTTCTATCTTAATTGATTTCTGTGTTTAGGTCCACAAGGTCCACAATTGCAGAAGTTATTGGAAAGAATCACTGGCCAATACACTGTCCCAAATGTCTTTATTGGTAAGCAAAGCAATCACTCACTAGAGTTTAATTACTATACTGTGACAGTGCAAAATTATTTTACACATATATGCTTTGCCGGTATGTGTTTCAGATTCAATAATTGACGTGACAACCCATCATTGGATGTAAACGTAAAATAATTTTACACTTACTGTGCATAATAATTAAATTCTTACAGAGTATTATCATGTCTTTATTTTGTTCCTTTTGTCAAATATTAATCCTAATTTAAACCCAAGGAACACCTTGTTTGGATAAAAAAGTTTAATTAGGTCCATATAGTATAAGCGCTTATCATGTATGTGCTTATGTATCAAACGATAAAATAAAGTCAAATTGTTTTCATAAGTTATCATGTAGAGCTTATGGAAATAAATTGAAAAAAGCTTAAGGACAGGTTGTAAGTTGTTTCTATAAGTTTATGCCAGTAGATAAGATGATGGAATAAGAGCTTATAAGTTATATTAGCTTGTATATTTTAGTCATGCTGATTAGGTTATCATAACTTAGGTATTGAAAAATCTTGTGCAGACTTCTGTGATTGAGAGTGGTTATATTAGGTAGGTGTATATTGAAAATTATACGATATATAGGGATATATAAGTAGTACTTCTGGGTTGAAGGCATGGTGAACATGCTTAATATCTCTAGTGATTTATGAAACCAAGAATCTGTGTTTGTGCCAGAAAAGTGAGAGGGAGAGAATTGTATAAGCTCAGCTGAAAGTGTTTACTATTTTTTTCAATAGCAAGAGAAATTTCATCTGGGAGAAGAAAAAACATCTTCTAAGAAAATAGAGATGTAAAGATATAAATAAAAAATGCACAAACTCTTTTGAAACAACCACGGGTTTCCCAATGAGTTTGTTAAGGAGGAACTTTTGAATATTTGGTGACTTTGAGAACGATTGGGAAAAATAATAAACCACAAAAACCTAAATTTTAAATGCTTCACGTCATCATTGTTAGCAAATAGCTGAGGAGACCTAGTAGCAGAAGGGGTTGTGAGGGAACCCTAAGGAAAAGCCATTGAGGAGACATTTTGAGCCCCAAGTATCCTCCAAGAGTTTGATACAAGTGTTGCATTGAAGGTATTAGAAATCATTAGATCCAAAGGAGAAGTTCATCTAGCAGAATGCCATTGTCATTGTCATTGCCATTGCCATTGCCATTGCCACCTAATTTCCAATGCAATGTTTTTAGACAACTAAATTTCCCAGGGTGAATCCCTCTTCATTTCTATGTTTGCAACAATCTACAAGCACACAAGCGATCTCTACTATTTGCACATGGGTTGTGAGGCAGACTGATACTAGTTTTTTGATCTAATTTCAAAGTCCTTTCTGTAAAGAACGTATATCTTAGAAACTCCAATACATGTAATTGTAGGCTCTCTCGAAATCCAACTTAAAAAATTAGGCCACACTCACCATTCACAATCGCAGAAAGTTTTCACAGTCAGATCCTGATATAGTATTTCAATTCTTCCCATGCCTTGAACTATGGATTAATATAAGGGTAATGTTAATTGGTGCCCCCGGGGCACTGGTTAAGGAGCAAATATAGTAATATTACATTGGAACTCGTGCAGTCAACTCATTAAAAGTCTAAAAAGTATTTTTTTTAATTTAAAACTTTCTTTTTTTGGTTTCCTTAACCCGTGCCCCGGGGGCACCGGTTAACATACTGGTTGGGCTACGGGTTGAAGAAGACAACGGGGTTCAAAACCGGGAGAAGGAGAAAATGTTAATATACGAACAACTAATCACTAACATTTGCCTATAAAAAAAAATCTAATATAATTTTCCAAAACAACATAAGTCTGTTACCCTGCATTTAATTTTATCTTTTGAACAGAACAGTTTATTTCTGACCCTAAAGTTTTCTTCATTGCAGGTGGCCAACACATTGGTGGCTGTACAGGTATATTTTCCTTGTGCTCTTGTTGAATGATTGATTATTTAACTGGGGGGGGATGACTCTTGACTGTTCAAAACATTAGTCTTTTCCTCAGTGACTGAAGCATTATTCTTTTTATTTGTTTACACTCTTCTACTTTTACTTCAAAATGTATATGACCGCAAATGTAAATTGTCTGCATATATGAATTTCAATTTGATCAGTGCTAATTATCGCGATAATTTGTCTCACGGTTTCCAGTTAACCATTTAAATCCTCTTATGGCTGGAAAACATGCTTGTGAAATTGCATTAATATTGTGCCACATTATCAGTTATGCATGTATGACGCTTTCATGGATCCTCTCATTGTGACAAATATCATTTCTGTTTGGATTTCTTGCAGTTTCAGAAATACCAACGTTGCACAGTTCCATAAAAATCTTAACAGTGAAATTTCCTTTGTCTTCTCCTTTTGTTTCCCTCATTATTTTTACTTGTGCAGATACACTTAAGCTGTACAGGAAAGGAGACCTTGAAACTCTGCTATCAGAAGCTGTTGCTAAAAATAAGGGGAGCTAA

Protein sequence

>MS.gene059026.t1

MASSMANTFTLPRYFNKNHSSSSSSSSISKIFTFYTPISTPSPIIITNASSRRAPTFPRAMSSSSSSSPSPSSSSPSFGSRLEETIKNTVSQNPVVVYSKSWCSYCSEVKSLFKKLGTQPLVIELDELGPQGPQLQKLLERITGQYTVPNVFIGGQHIGGCTDTLKLYRKGDLETLLSEAVAKNKGS