Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07881.t1 | XP_003610307.1 | 90.6 | 127 | 11 | 1 | 132 | 258 | 66 | 191 | 3.70E-51 | 211.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07881.t1 | O82230 | 83.3 | 114 | 18 | 1 | 146 | 259 | 70 | 182 | 6.3e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07881.t1 | G7JFM1 | 90.6 | 127 | 11 | 1 | 132 | 258 | 66 | 191 | 2.6e-51 | 211.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059124 | MS.gene07881 | 0.802286 | 6.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07881.t1 | MTR_4g130730 | 88.333 | 120 | 13 | 1 | 128 | 247 | 62 | 180 | 3.67e-66 | 204 |
| MS.gene07881.t1 | MTR_0380s0040 | 87.719 | 114 | 13 | 1 | 146 | 259 | 76 | 188 | 8.41e-66 | 203 |
| MS.gene07881.t1 | MTR_4g130690 | 79.259 | 135 | 19 | 1 | 7 | 141 | 154 | 279 | 8.72e-66 | 212 |
| MS.gene07881.t1 | MTR_3g045840 | 59.259 | 135 | 49 | 4 | 9 | 141 | 108 | 238 | 6.86e-40 | 145 |
| MS.gene07881.t1 | MTR_4g129690 | 46.980 | 149 | 51 | 6 | 12 | 142 | 120 | 258 | 4.09e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07881.t1 | AT2G24020 | 83.333 | 114 | 18 | 1 | 146 | 259 | 70 | 182 | 2.22e-61 | 191 |
| MS.gene07881.t1 | AT2G24020 | 83.333 | 114 | 18 | 1 | 146 | 259 | 68 | 180 | 2.30e-61 | 191 |
| MS.gene07881.t1 | AT4G30620 | 84.211 | 114 | 16 | 2 | 146 | 259 | 69 | 180 | 7.86e-61 | 190 |
Find 56 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGACGAGCCTTATGAAAT+TGG | 0.208867 | 8.3:+70884424 | MS.gene07881:CDS |
| ATCACTCATCCTTTCCTTCA+TGG | 0.264347 | 8.3:-70887076 | None:intergenic |
| AGTCACAGAGGCTTACATTA+AGG | 0.296471 | 8.3:+70886938 | MS.gene07881:CDS |
| GTTGTTAATACAGCAAAGTT+AGG | 0.297094 | 8.3:+70884634 | MS.gene07881:CDS |
| AGTGATCTTGCTCAGAGTTT+AGG | 0.315621 | 8.3:+70887093 | MS.gene07881:CDS |
| CGCTTTGCACCATAGAGATC+GGG | 0.331763 | 8.3:-70884377 | None:intergenic |
| ACCGAGGCTGCTATGGAATT+AGG | 0.336676 | 8.3:+70886620 | MS.gene07881:CDS |
| TCACAACTCCACTCTTCCTT+TGG | 0.340735 | 8.3:-70884460 | None:intergenic |
| ATTTCATAAGGCTCGTCATT+AGG | 0.345456 | 8.3:-70884421 | None:intergenic |
| TCTCACTCGTGGCTTTGATT+TGG | 0.375387 | 8.3:-70884489 | None:intergenic |
| CTATGCAGAGCCGAGTTTGA+TGG | 0.393847 | 8.3:+70886240 | MS.gene07881:intron |
| AAGCACAAGGCCAAGGAAGC+AGG | 0.394860 | 8.3:+70884541 | MS.gene07881:CDS |
| TTCTTCAAACCAATTTCATA+AGG | 0.405524 | 8.3:-70884433 | None:intergenic |
| TCCTCAACCTTGCTTAGCTT+TGG | 0.410759 | 8.3:+70884684 | MS.gene07881:CDS |
| GAATGAGACTATGGTTGATA+AGG | 0.413873 | 8.3:+70884714 | MS.gene07881:CDS |
| AAGCCAGACCCCGATCTCTA+TGG | 0.420533 | 8.3:+70884368 | MS.gene07881:intron |
| ACAAATTACCGAGGCTGCTA+TGG | 0.426700 | 8.3:+70886613 | MS.gene07881:CDS |
| TTGTTAATACAGCAAAGTTA+GGG | 0.428938 | 8.3:+70884635 | MS.gene07881:CDS |
| GTATCCGATTTGATTCTACT+TGG | 0.436674 | 8.3:-70886107 | None:intergenic |
| GGCTCGTCATTAGGAGCATC+AGG | 0.436835 | 8.3:-70884412 | None:intergenic |
| GGAAGTCATGAATGAGACTA+TGG | 0.437246 | 8.3:+70884705 | MS.gene07881:CDS |
| GGAAGATTGATAAGTGCAAC+AGG | 0.444425 | 8.3:+70884572 | MS.gene07881:CDS |
| TCGCTTTGCACCATAGAGAT+CGG | 0.451936 | 8.3:-70884378 | None:intergenic |
| CTGTGAGGGTGAGTTAATAA+AGG | 0.456581 | 8.3:+70886266 | MS.gene07881:CDS |
| TCGGTAATTTGTGTTCGTAC+AGG | 0.488513 | 8.3:-70886602 | None:intergenic |
| TGATTATAGGGCGGAATGCT+CGG | 0.498257 | 8.3:+70886027 | MS.gene07881:intron |
| AGCACAAGGCCAAGGAAGCA+GGG | 0.500528 | 8.3:+70884542 | MS.gene07881:CDS |
| AATGAGACTATGGTTGATAA+GGG | 0.505568 | 8.3:+70884715 | MS.gene07881:CDS |
| TTAGGAATGCCACCAGGTCT+CGG | 0.506708 | 8.3:+70887111 | MS.gene07881:CDS |
| TCCTAATTCCATAGCAGCCT+CGG | 0.521629 | 8.3:-70886621 | None:intergenic |
| TCTGTTCGAGACTGTGAAGA+AGG | 0.525704 | 8.3:+70886071 | MS.gene07881:CDS |
| GGCTTGAATGCTCATCTGAA+TGG | 0.527599 | 8.3:+70884514 | MS.gene07881:CDS |
| GGAGCAATTTGTGGAGATGA+TGG | 0.527983 | 8.3:+70884759 | MS.gene07881:CDS |
| TTGTCCAAGTAGAATCAAAT+CGG | 0.528710 | 8.3:+70886103 | MS.gene07881:CDS |
| ATGCCACCAGGTCTCGGTGA+AGG | 0.535474 | 8.3:+70887117 | MS.gene07881:CDS |
| TCCAAAGCTAAGCAAGGTTG+AGG | 0.542347 | 8.3:-70884685 | None:intergenic |
| GGCGGAATGCTCGGTCAGCT+CGG | 0.544938 | 8.3:+70886036 | MS.gene07881:CDS |
| TGCCACCAGGTCTCGGTGAA+GGG | 0.550963 | 8.3:+70887118 | MS.gene07881:CDS |
| TTCAACCCTTCACCGAGACC+TGG | 0.556038 | 8.3:-70887123 | None:intergenic |
| TGCACAACAGAAGAGTGTCC+AGG | 0.557903 | 8.3:+70886962 | MS.gene07881:CDS |
| TGCTGAAAAGATTACTGAAG+CGG | 0.566990 | 8.3:+70884609 | MS.gene07881:CDS |
| TGGCAAGAAGCACAAGGCCA+AGG | 0.574163 | 8.3:+70884534 | MS.gene07881:CDS |
| GACTGTGAAGAAGGCGCAGG+CGG | 0.578245 | 8.3:+70886080 | MS.gene07881:CDS |
| ATCAAAGCCACGAGTGAGAG+TGG | 0.583066 | 8.3:+70884493 | MS.gene07881:CDS |
| ATGACTTCCAAAGCTAAGCA+AGG | 0.597385 | 8.3:-70884691 | None:intergenic |
| CTCACAGTAACCATCAAACT+CGG | 0.600828 | 8.3:-70886250 | None:intergenic |
| CGAGACTGTGAAGAAGGCGC+AGG | 0.604007 | 8.3:+70886077 | MS.gene07881:CDS |
| CAGAGTTTAGGAATGCCACC+AGG | 0.628036 | 8.3:+70887105 | MS.gene07881:CDS |
| GAGTTTGATGGTTACTGTGA+GGG | 0.628368 | 8.3:+70886252 | MS.gene07881:CDS |
| TCTGAATGGCAAGAAGCACA+AGG | 0.637711 | 8.3:+70884528 | MS.gene07881:CDS |
| GCTTTGCACCATAGAGATCG+GGG | 0.638919 | 8.3:-70884376 | None:intergenic |
| AACCCTTCACCGAGACCTGG+TGG | 0.649082 | 8.3:-70887120 | None:intergenic |
| ATTCAAGCCACTCTCACTCG+TGG | 0.655211 | 8.3:-70884500 | None:intergenic |
| TGTTAATACAGCAAAGTTAG+GGG | 0.659783 | 8.3:+70884636 | MS.gene07881:CDS |
| CGAGTTTGATGGTTACTGTG+AGG | 0.677449 | 8.3:+70886251 | MS.gene07881:CDS |
| TGTACGAACACAAATTACCG+AGG | 0.748644 | 8.3:+70886604 | MS.gene07881:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATATTTAAACATCTT+TGG | + | chr8.3:70886894-70886913 | MS.gene07881:intron | 15.0% |
| !! | TCGTAATATTCATAATATAA+GGG | + | chr8.3:70885984-70886003 | MS.gene07881:intron | 15.0% |
| !! | TTTAATACACATACAAAAAA+AGG | + | chr8.3:70885326-70885345 | MS.gene07881:intron | 15.0% |
| !! | TTTGATATTTAAACATCTTT+GGG | + | chr8.3:70886895-70886914 | MS.gene07881:intron | 15.0% |
| !!! | ACTTTTCAATAATCTAAATA+TGG | + | chr8.3:70886858-70886877 | MS.gene07881:intron | 15.0% |
| !!! | GTAAATTCTTTGATTTTTTT+AGG | + | chr8.3:70886784-70886803 | MS.gene07881:intron | 15.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr8.3:70885283-70885302 | None:intergenic | 20.0% |
| !! | AATAAGATTAGACCTTAAAA+AGG | + | chr8.3:70886733-70886752 | MS.gene07881:intron | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | - | chr8.3:70885285-70885304 | None:intergenic | 20.0% |
| !! | ATAATATAATAGATCTGCAA+TGG | + | chr8.3:70886446-70886465 | MS.gene07881:intron | 20.0% |
| !! | ATATTATTACTAATACGAAC+CGG | - | chr8.3:70884914-70884933 | None:intergenic | 20.0% |
| !! | ATTCATAATATAAGGGTAAT+TGG | + | chr8.3:70885991-70886010 | MS.gene07881:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | - | chr8.3:70885284-70885303 | None:intergenic | 20.0% |
| !! | GTCGTAATATTCATAATATA+AGG | + | chr8.3:70885983-70886002 | MS.gene07881:intron | 20.0% |
| !! | TTAAAAAGGTGAACAAAAAT+AGG | + | chr8.3:70886747-70886766 | MS.gene07881:intron | 20.0% |
| !!! | ATTTTATAAGGTTCTTAGTT+AGG | + | chr8.3:70885675-70885694 | MS.gene07881:intron | 20.0% |
| !!! | CAATTTTTAATTTGATGGAT+TGG | - | chr8.3:70885920-70885939 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTCACCTTTTTA+AGG | - | chr8.3:70886748-70886767 | None:intergenic | 20.0% |
| !!! | TTGTTTACTTGATTTTGATT+AGG | + | chr8.3:70886543-70886562 | MS.gene07881:intron | 20.0% |
| !!! | TTTGATTAGGTTTAATTTTC+AGG | + | chr8.3:70886556-70886575 | MS.gene07881:intron | 20.0% |
| !!! | TTTTATATTTCGGAAAATGT+TGG | + | chr8.3:70885844-70885863 | MS.gene07881:intron | 20.0% |
| ! | AACAAATCAACATACTACAA+AGG | - | chr8.3:70887028-70887047 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | + | chr8.3:70885408-70885427 | MS.gene07881:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | + | chr8.3:70885409-70885428 | MS.gene07881:intron | 25.0% |
| ! | AGTACACAAATATTGTGAAT+TGG | + | chr8.3:70885519-70885538 | MS.gene07881:intron | 25.0% |
| ! | AGTATGTTGTAAATTGTTTG+AGG | - | chr8.3:70885473-70885492 | None:intergenic | 25.0% |
| ! | ATAATATAAGGGTAATTGGT+GGG | + | chr8.3:70885995-70886014 | MS.gene07881:intron | 25.0% |
| ! | CATACAAAAAAAGGACAATT+TGG | + | chr8.3:70885335-70885354 | MS.gene07881:intron | 25.0% |
| ! | CCATCAAATTAAAAATTGTG+TGG | + | chr8.3:70885922-70885941 | MS.gene07881:intron | 25.0% |
| ! | GTACACAAATATTGTGAATT+GGG | + | chr8.3:70885520-70885539 | MS.gene07881:intron | 25.0% |
| ! | TAATGCAAGTTATTGAATGA+TGG | - | chr8.3:70884074-70884093 | None:intergenic | 25.0% |
| ! | TCTAAATATGGTCTAGAAAT+TGG | + | chr8.3:70886870-70886889 | MS.gene07881:intron | 25.0% |
| ! | TCTCACAAAATCTAAAAAAG+AGG | + | chr8.3:70884738-70884757 | MS.gene07881:CDS | 25.0% |
| ! | TTCTTCAAACCAATTTCATA+AGG | - | chr8.3:70884436-70884455 | None:intergenic | 25.0% |
| ! | TTGTTAATACAGCAAAGTTA+GGG | + | chr8.3:70884635-70884654 | MS.gene07881:CDS | 25.0% |
| ! | TTTGTTAATTGATTATAGGG+CGG | + | chr8.3:70886018-70886037 | MS.gene07881:intron | 25.0% |
| !! | ATGGTATTGAAATTGTTTGT+AGG | + | chr8.3:70884219-70884238 | MS.gene07881:intron | 25.0% |
| !! | GATGCACAACATATTTTATA+AGG | + | chr8.3:70885663-70885682 | MS.gene07881:intron | 25.0% |
| !! | GGTAAAAATAACTTTTCAAC+AGG | + | chr8.3:70886983-70887002 | MS.gene07881:intron | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr8.3:70885273-70885292 | None:intergenic | 25.0% |
| !! | TGGTATTGAAATTGTTTGTA+GGG | + | chr8.3:70884220-70884239 | MS.gene07881:intron | 25.0% |
| !!! | ATTTTTTATGCACTGAATGT+TGG | + | chr8.3:70886819-70886838 | MS.gene07881:intron | 25.0% |
| !!! | CCACACAATTTTTAATTTGA+TGG | - | chr8.3:70885925-70885944 | None:intergenic | 25.0% |
| !!! | GGGTTTGTTAATTGATTATA+GGG | + | chr8.3:70886015-70886034 | MS.gene07881:intron | 25.0% |
| !!! | GTTGAAAAGTTATTTTTACC+TGG | - | chr8.3:70886983-70887002 | None:intergenic | 25.0% |
| !!! | TGGGTTTGTTAATTGATTAT+AGG | + | chr8.3:70886014-70886033 | MS.gene07881:intron | 25.0% |
| !!! | TTTTTTATGCACTGAATGTT+GGG | + | chr8.3:70886820-70886839 | MS.gene07881:intron | 25.0% |
| AAAATGTTAGAGAAGAACCT+TGG | + | chr8.3:70886370-70886389 | MS.gene07881:intron | 30.0% | |
| AAACATATGCTTGAGTTAGT+AGG | - | chr8.3:70884119-70884138 | None:intergenic | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | + | chr8.3:70885411-70885430 | MS.gene07881:intron | 30.0% | |
| AGAAGAACATGAACAAAAAG+TGG | - | chr8.3:70885009-70885028 | None:intergenic | 30.0% | |
| ATGAAAGTGAAACCAAGAAA+CGG | - | chr8.3:70886523-70886542 | None:intergenic | 30.0% | |
| CACATAATTCGTGTAATCAA+GGG | - | chr8.3:70885201-70885220 | None:intergenic | 30.0% | |
| CATAATATAAGGGTAATTGG+TGG | + | chr8.3:70885994-70886013 | MS.gene07881:intron | 30.0% | |
| GAAACTTGGTAGAAGAAATT+AGG | - | chr8.3:70884979-70884998 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | + | chr8.3:70885410-70885429 | MS.gene07881:intron | 30.0% | |
| GTTGTTAATACAGCAAAGTT+AGG | + | chr8.3:70884634-70884653 | MS.gene07881:CDS | 30.0% | |
| TAAAAAAGAGGAGCAATTTG+TGG | + | chr8.3:70884750-70884769 | MS.gene07881:CDS | 30.0% | |
| TAAGTTAGATACAATCTGAC+AGG | - | chr8.3:70886699-70886718 | None:intergenic | 30.0% | |
| TATTGTGAATTGGGTAAAAG+AGG | + | chr8.3:70885529-70885548 | MS.gene07881:intron | 30.0% | |
| TCACATAATTCGTGTAATCA+AGG | - | chr8.3:70885202-70885221 | None:intergenic | 30.0% | |
| TCATGATATTGATCCATAAC+AGG | + | chr8.3:70885706-70885725 | MS.gene07881:intron | 30.0% | |
| TGGTTTGAAGAAAAAACCAA+AGG | + | chr8.3:70884444-70884463 | MS.gene07881:CDS | 30.0% | |
| TGTTAATACAGCAAAGTTAG+GGG | + | chr8.3:70884636-70884655 | MS.gene07881:CDS | 30.0% | |
| TTACACGAATTATGTGACTA+TGG | + | chr8.3:70885205-70885224 | MS.gene07881:intron | 30.0% | |
| TTACGAAATCTCATAATGAG+AGG | + | chr8.3:70885228-70885247 | MS.gene07881:intron | 30.0% | |
| TTGTCCAAGTAGAATCAAAT+CGG | + | chr8.3:70886103-70886122 | MS.gene07881:CDS | 30.0% | |
| ! | TTTTTATGCACTGAATGTTG+GGG | + | chr8.3:70886821-70886840 | MS.gene07881:intron | 30.0% |
| !! | AAACCACAAAAGTTTTAGTG+GGG | - | chr8.3:70885607-70885626 | None:intergenic | 30.0% |
| !! | AATGAGACTATGGTTGATAA+GGG | + | chr8.3:70884715-70884734 | MS.gene07881:CDS | 30.0% |
| !! | AGAAACCACAAAAGTTTTAG+TGG | - | chr8.3:70885609-70885628 | None:intergenic | 30.0% |
| !! | ATGTTGTTGCTTATGTTTTC+AGG | + | chr8.3:70887053-70887072 | MS.gene07881:intron | 30.0% |
| !! | GAAACCACAAAAGTTTTAGT+GGG | - | chr8.3:70885608-70885627 | None:intergenic | 30.0% |
| !!! | TGATTTTTTTAGGCTGCTTA+AGG | + | chr8.3:70886794-70886813 | MS.gene07881:intron | 30.0% |
| AAACCAAGAAACGGGTAATA+TGG | - | chr8.3:70886514-70886533 | None:intergenic | 35.0% | |
| AAATGAATCACCATGAGTTG+AGG | - | chr8.3:70885040-70885059 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | + | chr8.3:70885412-70885431 | MS.gene07881:intron | 35.0% | |
| AGAAAAAACCAAAGGAAGAG+TGG | + | chr8.3:70884452-70884471 | MS.gene07881:CDS | 35.0% | |
| AGAAGAATTCGGTACGTATA+GGG | + | chr8.3:70884868-70884887 | MS.gene07881:intron | 35.0% | |
| ATTTCATAAGGCTCGTCATT+AGG | - | chr8.3:70884424-70884443 | None:intergenic | 35.0% | |
| ATTTGAGTATCCCAATTTGC+AGG | + | chr8.3:70884343-70884362 | MS.gene07881:intron | 35.0% | |
| CGTAAATCATCCAACTCAAA+GGG | - | chr8.3:70885794-70885813 | None:intergenic | 35.0% | |
| CTCACATAAGCAAGCATAAA+AGG | - | chr8.3:70886342-70886361 | None:intergenic | 35.0% | |
| CTTCTATGGATCAAGTTTCT+TGG | - | chr8.3:70885584-70885603 | None:intergenic | 35.0% | |
| GAACATAGTCACATAATTCG+CGG | + | chr8.3:70884798-70884817 | MS.gene07881:intron | 35.0% | |
| GTAAATCATCCAACTCAAAG+GGG | - | chr8.3:70885793-70885812 | None:intergenic | 35.0% | |
| TCGTAAATCATCCAACTCAA+AGG | - | chr8.3:70885795-70885814 | None:intergenic | 35.0% | |
| TGAAAGTGAAACCAAGAAAC+GGG | - | chr8.3:70886522-70886541 | None:intergenic | 35.0% | |
| TGCTGAAAAGATTACTGAAG+CGG | + | chr8.3:70884609-70884628 | MS.gene07881:CDS | 35.0% | |
| TGTGATTATCTCGTACAACT+TGG | - | chr8.3:70886195-70886214 | None:intergenic | 35.0% | |
| TTCAGTTGAACATGATCATG+TGG | + | chr8.3:70885874-70885893 | MS.gene07881:intron | 35.0% | |
| TTGTGTAAGTAGATCAACGA+TGG | + | chr8.3:70884200-70884219 | MS.gene07881:intron | 35.0% | |
| ! | AATGACGAGCCTTATGAAAT+TGG | + | chr8.3:70884424-70884443 | MS.gene07881:CDS | 35.0% |
| ! | GAAATTGTTTGTAGGGTACT+CGG | + | chr8.3:70884227-70884246 | MS.gene07881:intron | 35.0% |
| ! | GAATGAGACTATGGTTGATA+AGG | + | chr8.3:70884714-70884733 | MS.gene07881:CDS | 35.0% |
| ! | GTATCCGATTTGATTCTACT+TGG | - | chr8.3:70886110-70886129 | None:intergenic | 35.0% |
| ! | TTGAATGATGGTGTGCAATA+CGG | - | chr8.3:70884062-70884081 | None:intergenic | 35.0% |
| !! | ACTTTCACTTTTAGTCACAG+AGG | + | chr8.3:70886926-70886945 | MS.gene07881:CDS | 35.0% |
| !!! | AATTTTCAGGTGACACTATC+AGG | + | chr8.3:70886569-70886588 | MS.gene07881:intron | 35.0% |
| !!! | ATTTTCAGGTGACACTATCA+GGG | + | chr8.3:70886570-70886589 | MS.gene07881:intron | 35.0% |
| !!! | CCTTTTTTTCAACCAATCAG+CGG | + | chr8.3:70885082-70885101 | MS.gene07881:intron | 35.0% |
| AAAGTGGAGAGTGAGAAACT+TGG | - | chr8.3:70884993-70885012 | None:intergenic | 40.0% | |
| AGTCACAGAGGCTTACATTA+AGG | + | chr8.3:70886938-70886957 | MS.gene07881:CDS | 40.0% | |
| AGTGATCTTGCTCAGAGTTT+AGG | + | chr8.3:70887093-70887112 | MS.gene07881:CDS | 40.0% | |
| ATCAAGGGAGAATTGCGAAT+TGG | - | chr8.3:70885186-70885205 | None:intergenic | 40.0% | |
| ATCACTCATCCTTTCCTTCA+TGG | - | chr8.3:70887079-70887098 | None:intergenic | 40.0% | |
| ATGACTTCCAAAGCTAAGCA+AGG | - | chr8.3:70884694-70884713 | None:intergenic | 40.0% | |
| CAAGTTTCTTGGATGCATAC+AGG | - | chr8.3:70885573-70885592 | None:intergenic | 40.0% | |
| CGCATTATCTTAATCGCACA+AGG | - | chr8.3:70884255-70884274 | None:intergenic | 40.0% | |
| CTCACAGTAACCATCAAACT+CGG | - | chr8.3:70886253-70886272 | None:intergenic | 40.0% | |
| CTCGTAACATTCGAATCACA+CGG | - | chr8.3:70886416-70886435 | None:intergenic | 40.0% | |
| CTGTGAGGGTGAGTTAATAA+AGG | + | chr8.3:70886266-70886285 | MS.gene07881:CDS | 40.0% | |
| GAAGAATTCGGTACGTATAG+GGG | + | chr8.3:70884869-70884888 | MS.gene07881:intron | 40.0% | |
| GAATTGGGTAAAAGAGGTTC+TGG | + | chr8.3:70885535-70885554 | MS.gene07881:intron | 40.0% | |
| GAGAAGAATTCGGTACGTAT+AGG | + | chr8.3:70884867-70884886 | MS.gene07881:intron | 40.0% | |
| GGAAGATTGATAAGTGCAAC+AGG | + | chr8.3:70884572-70884591 | MS.gene07881:CDS | 40.0% | |
| GGAAGTCATGAATGAGACTA+TGG | + | chr8.3:70884705-70884724 | MS.gene07881:CDS | 40.0% | |
| GTACCATATTACCCGTTTCT+TGG | + | chr8.3:70886508-70886527 | MS.gene07881:intron | 40.0% | |
| TGTACGAACACAAATTACCG+AGG | + | chr8.3:70886604-70886623 | MS.gene07881:CDS | 40.0% | |
| ! | AAGCCCCACTAAAACTTTTG+TGG | + | chr8.3:70885601-70885620 | MS.gene07881:intron | 40.0% |
| ! | CCGCTGATTGGTTGAAAAAA+AGG | - | chr8.3:70885085-70885104 | None:intergenic | 40.0% |
| ! | GAGTTTGATGGTTACTGTGA+GGG | + | chr8.3:70886252-70886271 | MS.gene07881:CDS | 40.0% |
| ! | TAACGATGGTGTTTTCGCTT+CGG | - | chr8.3:70885758-70885777 | None:intergenic | 40.0% |
| ! | TCGGTAATTTGTGTTCGTAC+AGG | - | chr8.3:70886605-70886624 | None:intergenic | 40.0% |
| ! | TGTTTTCGCTTCGGAATACA+AGG | - | chr8.3:70885749-70885768 | None:intergenic | 40.0% |
| !! | AAGTTTTAGTGGGGCTTCTA+TGG | - | chr8.3:70885598-70885617 | None:intergenic | 40.0% |
| !! | CTTATGTTTTCAGGCCATGA+AGG | + | chr8.3:70887062-70887081 | MS.gene07881:intron | 40.0% |
| AAAGCATGGTTACCGCTGAT+TGG | - | chr8.3:70885097-70885116 | None:intergenic | 45.0% | |
| AATCAGCGGTAACCATGCTT+TGG | + | chr8.3:70885096-70885115 | MS.gene07881:intron | 45.0% | |
| AATGGATCCAACCCTTTCCT+TGG | + | chr8.3:70886464-70886483 | MS.gene07881:intron | 45.0% | |
| ACAAATTACCGAGGCTGCTA+TGG | + | chr8.3:70886613-70886632 | MS.gene07881:CDS | 45.0% | |
| ACATAATTCGCGGTTCGTTC+CGG | + | chr8.3:70884808-70884827 | MS.gene07881:intron | 45.0% | |
| AGAGAAGAACCTTGGCACAA+TGG | + | chr8.3:70886378-70886397 | MS.gene07881:intron | 45.0% | |
| ATGGATCCAACCCTTTCCTT+GGG | + | chr8.3:70886465-70886484 | MS.gene07881:intron | 45.0% | |
| CAACTCTAACCATTGTGCCA+AGG | - | chr8.3:70886390-70886409 | None:intergenic | 45.0% | |
| CACAACATTAGAGAGAGAGC+AGG | - | chr8.3:70886303-70886322 | None:intergenic | 45.0% | |
| GAACATGATCATGTGGCACA+TGG | + | chr8.3:70885881-70885900 | MS.gene07881:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | + | chr8.3:70885424-70885443 | MS.gene07881:intron | 45.0% | |
| GCTCTCTCTCTAATGTTGTG+CGG | + | chr8.3:70886303-70886322 | MS.gene07881:intron | 45.0% | |
| GGAGCAATTTGTGGAGATGA+TGG | + | chr8.3:70884759-70884778 | MS.gene07881:CDS | 45.0% | |
| GGCGAGAACTACTTTAACGA+TGG | - | chr8.3:70885772-70885791 | None:intergenic | 45.0% | |
| GGCTTGAATGCTCATCTGAA+TGG | + | chr8.3:70884514-70884533 | MS.gene07881:CDS | 45.0% | |
| GGGTTACATTAAGGGAAGGA+GGG | + | chr8.3:70885432-70885451 | MS.gene07881:intron | 45.0% | |
| TAACCATGCTTTGGTACGCT+TGG | + | chr8.3:70885105-70885124 | MS.gene07881:intron | 45.0% | |
| TACGCGACAGGAGAAGAATT+CGG | + | chr8.3:70884857-70884876 | MS.gene07881:intron | 45.0% | |
| TCACAACTCCACTCTTCCTT+TGG | - | chr8.3:70884463-70884482 | None:intergenic | 45.0% | |
| TCCAAAGCTAAGCAAGGTTG+AGG | - | chr8.3:70884688-70884707 | None:intergenic | 45.0% | |
| TCCTAATTCCATAGCAGCCT+CGG | - | chr8.3:70886624-70886643 | None:intergenic | 45.0% | |
| TCCTCAACCTTGCTTAGCTT+TGG | + | chr8.3:70884684-70884703 | MS.gene07881:CDS | 45.0% | |
| TCGCTTTGCACCATAGAGAT+CGG | - | chr8.3:70884381-70884400 | None:intergenic | 45.0% | |
| TCTGTTCGAGACTGTGAAGA+AGG | + | chr8.3:70886071-70886090 | MS.gene07881:CDS | 45.0% | |
| TGATTATAGGGCGGAATGCT+CGG | + | chr8.3:70886027-70886046 | MS.gene07881:intron | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | + | chr8.3:70885423-70885442 | MS.gene07881:intron | 45.0% | |
| ! | AGTACCGAATTCGGGTACTT+CGG | - | chr8.3:70885157-70885176 | None:intergenic | 45.0% |
| ! | CGAGTTTGATGGTTACTGTG+AGG | + | chr8.3:70886251-70886270 | MS.gene07881:CDS | 45.0% |
| ! | CGTATAGGGGTATACAGCTT+CGG | + | chr8.3:70884882-70884901 | MS.gene07881:intron | 45.0% |
| ! | TCTGAATGGCAAGAAGCACA+AGG | + | chr8.3:70884528-70884547 | MS.gene07881:CDS | 45.0% |
| ! | TCTGGCTTAGCCTGCAAATT+GGG | - | chr8.3:70884356-70884375 | None:intergenic | 45.0% |
| !! | GTTTTCAGGCCATGAAGGAA+AGG | + | chr8.3:70887067-70887086 | MS.gene07881:intron | 45.0% |
| !! | TCTCACTCGTGGCTTTGATT+TGG | - | chr8.3:70884492-70884511 | None:intergenic | 45.0% |
| !! | TGGTACGTGAGTACCGAATT+CGG | - | chr8.3:70885166-70885185 | None:intergenic | 45.0% |
| !!! | AAAAAAATACTTTTATATTT+CGG | + | chr8.3:70885834-70885853 | MS.gene07881:intron | 5.0% |
| ACCGAGGCTGCTATGGAATT+AGG | + | chr8.3:70886620-70886639 | MS.gene07881:CDS | 50.0% | |
| AGGGGGGTTACATTAAGGGA+AGG | + | chr8.3:70885428-70885447 | MS.gene07881:intron | 50.0% | |
| ATCAAAGCCACGAGTGAGAG+TGG | + | chr8.3:70884493-70884512 | MS.gene07881:CDS | 50.0% | |
| ATTCAAGCCACTCTCACTCG+TGG | - | chr8.3:70884503-70884522 | None:intergenic | 50.0% | |
| ATTCGGGTACTTCGGCGTAT+TGG | - | chr8.3:70885149-70885168 | None:intergenic | 50.0% | |
| CAGAGTTTAGGAATGCCACC+AGG | + | chr8.3:70887105-70887124 | MS.gene07881:CDS | 50.0% | |
| CCAAGGAAGCAGGGCAAAAA+AGG | + | chr8.3:70884551-70884570 | MS.gene07881:CDS | 50.0% | |
| CGCTTTGCACCATAGAGATC+GGG | - | chr8.3:70884380-70884399 | None:intergenic | 50.0% | |
| CGGAATACAAGGCAGTGAAG+AGG | - | chr8.3:70885738-70885757 | None:intergenic | 50.0% | |
| CTATGCAGAGCCGAGTTTGA+TGG | + | chr8.3:70886240-70886259 | MS.gene07881:intron | 50.0% | |
| CTCACTCAGTCCTCAACTCA+TGG | + | chr8.3:70885027-70885046 | MS.gene07881:intron | 50.0% | |
| GAACCAAGCGTACCAAAGCA+TGG | - | chr8.3:70885111-70885130 | None:intergenic | 50.0% | |
| GCTTTGCACCATAGAGATCG+GGG | - | chr8.3:70884379-70884398 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGGGAAGG+AGG | + | chr8.3:70885431-70885450 | MS.gene07881:intron | 50.0% | |
| TAGTTCTCGCCCCTTTGAGT+TGG | + | chr8.3:70885781-70885800 | MS.gene07881:intron | 50.0% | |
| TATACAGCTTCGGTACGCTC+CGG | + | chr8.3:70884892-70884911 | MS.gene07881:intron | 50.0% | |
| TCAAACTCGGCTCTGCATAG+TGG | - | chr8.3:70886240-70886259 | None:intergenic | 50.0% | |
| TTAGGAATGCCACCAGGTCT+CGG | + | chr8.3:70887111-70887130 | MS.gene07881:CDS | 50.0% | |
| ! | AAGGGAAGGAGGGAGTACAT+CGG | + | chr8.3:70885442-70885461 | MS.gene07881:intron | 50.0% |
| ! | GTCTGGCTTAGCCTGCAAAT+TGG | - | chr8.3:70884357-70884376 | None:intergenic | 50.0% |
| ! | TACGCCGAAGTACCCGAATT+CGG | + | chr8.3:70885150-70885169 | MS.gene07881:intron | 50.0% |
| !! | GGTACGTGAGTACCGAATTC+GGG | - | chr8.3:70885165-70885184 | None:intergenic | 50.0% |
| !! | TGCACAACAGAAGAGTGTCC+AGG | + | chr8.3:70886962-70886981 | MS.gene07881:CDS | 50.0% |
| !!! | CCTTTTTTGCCCTGCTTCCT+TGG | - | chr8.3:70884554-70884573 | None:intergenic | 50.0% |
| AAGCACAAGGCCAAGGAAGC+AGG | + | chr8.3:70884541-70884560 | MS.gene07881:CDS | 55.0% | |
| AAGCCAGACCCCGATCTCTA+TGG | + | chr8.3:70884368-70884387 | MS.gene07881:intron | 55.0% | |
| ACAAGGCAGTGAAGAGGCGA+AGG | - | chr8.3:70885732-70885751 | None:intergenic | 55.0% | |
| ACCCTTTCCTTGGGTCTGCA+AGG | + | chr8.3:70886474-70886493 | MS.gene07881:intron | 55.0% | |
| AGCACAAGGCCAAGGAAGCA+GGG | + | chr8.3:70884542-70884561 | MS.gene07881:CDS | 55.0% | |
| CATGTGGCACATGGACAGCA+TGG | + | chr8.3:70885890-70885909 | MS.gene07881:intron | 55.0% | |
| GAAGAGGCGAAGGCCTGTTA+TGG | - | chr8.3:70885722-70885741 | None:intergenic | 55.0% | |
| GCCTTGCAGACCCAAGGAAA+GGG | - | chr8.3:70886478-70886497 | None:intergenic | 55.0% | |
| GTTCGTTCCGGTACGTGGTA+CGG | + | chr8.3:70884820-70884839 | MS.gene07881:intron | 55.0% | |
| TGCAGACCCAAGGAAAGGGT+TGG | - | chr8.3:70886474-70886493 | None:intergenic | 55.0% | |
| TGCCTTGCAGACCCAAGGAA+AGG | - | chr8.3:70886479-70886498 | None:intergenic | 55.0% | |
| TTCAACCCTTCACCGAGACC+TGG | - | chr8.3:70887126-70887145 | None:intergenic | 55.0% | |
| TTCGTTCCGGTACGTGGTAC+GGG | + | chr8.3:70884821-70884840 | MS.gene07881:intron | 55.0% | |
| ! | CTTTGGTACGCTTGGTTCGC+TGG | + | chr8.3:70885113-70885132 | MS.gene07881:intron | 55.0% |
| ! | TGGCAAGAAGCACAAGGCCA+AGG | + | chr8.3:70884534-70884553 | MS.gene07881:CDS | 55.0% |
| !! | GGCTCGTCATTAGGAGCATC+AGG | - | chr8.3:70884415-70884434 | None:intergenic | 55.0% |
| AACCCTTCACCGAGACCTGG+TGG | - | chr8.3:70887123-70887142 | None:intergenic | 60.0% | |
| AGCTCTGCCTTGCAGACCCA+AGG | - | chr8.3:70886484-70886503 | None:intergenic | 60.0% | |
| ATGCCACCAGGTCTCGGTGA+AGG | + | chr8.3:70887117-70887136 | MS.gene07881:CDS | 60.0% | |
| GCACCATAGAGATCGGGGTC+TGG | - | chr8.3:70884374-70884393 | None:intergenic | 60.0% | |
| TCCGGTACGTGGTACGGGTA+CGG | + | chr8.3:70884826-70884845 | MS.gene07881:intron | 60.0% | |
| TGCCACCAGGTCTCGGTGAA+GGG | + | chr8.3:70887118-70887137 | MS.gene07881:CDS | 60.0% | |
| ! | CGAGACTGTGAAGAAGGCGC+AGG | + | chr8.3:70886077-70886096 | MS.gene07881:CDS | 60.0% |
| ! | GACTGTGAAGAAGGCGCAGG+CGG | + | chr8.3:70886080-70886099 | MS.gene07881:CDS | 60.0% |
| CCCGTACCCGTACCACGTAC+CGG | - | chr8.3:70884830-70884849 | None:intergenic | 65.0% | |
| CCGGTACGTGGTACGGGTAC+GGG | + | chr8.3:70884827-70884846 | MS.gene07881:intron | 65.0% | |
| GGCGGAATGCTCGGTCAGCT+CGG | + | chr8.3:70886036-70886055 | MS.gene07881:CDS | 65.0% | |
| GTGGTACGGGTACGGGTTCG+CGG | + | chr8.3:70884834-70884853 | MS.gene07881:intron | 65.0% | |
| TCGCGGTTCGTTCCGGTACG+TGG | + | chr8.3:70884815-70884834 | MS.gene07881:intron | 65.0% | |
| ACGGGTTCGCGGTACGCGAC+AGG | + | chr8.3:70884845-70884864 | MS.gene07881:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 70884028 | 70887149 | 70884028 | ID=MS.gene07881 |
| chr8.3 | mRNA | 70884028 | 70887149 | 70884028 | ID=MS.gene07881.t1;Parent=MS.gene07881 |
| chr8.3 | exon | 70884028 | 70884044 | 70884028 | ID=MS.gene07881.t1.exon1;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70884028 | 70884044 | 70884028 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| chr8.3 | exon | 70884375 | 70884780 | 70884375 | ID=MS.gene07881.t1.exon2;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70884375 | 70884780 | 70884375 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| chr8.3 | exon | 70886036 | 70886145 | 70886036 | ID=MS.gene07881.t1.exon3;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70886036 | 70886145 | 70886036 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| chr8.3 | exon | 70886248 | 70886287 | 70886248 | ID=MS.gene07881.t1.exon4;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70886248 | 70886287 | 70886248 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| chr8.3 | exon | 70886578 | 70886649 | 70886578 | ID=MS.gene07881.t1.exon5;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70886578 | 70886649 | 70886578 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| chr8.3 | exon | 70886924 | 70886983 | 70886924 | ID=MS.gene07881.t1.exon6;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70886924 | 70886983 | 70886924 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| chr8.3 | exon | 70887075 | 70887149 | 70887075 | ID=MS.gene07881.t1.exon7;Parent=MS.gene07881.t1 |
| chr8.3 | CDS | 70887075 | 70887149 | 70887075 | ID=cds.MS.gene07881.t1;Parent=MS.gene07881.t1 |
| Gene Sequence |
| Protein sequence |
