AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059124


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059124.t1 MTR_0312s0030 95.692 325 14 0 1 325 1 325 0.0 648
MS.gene059124.t1 MTR_1g007520 95.692 325 14 0 1 325 1 325 0.0 648
MS.gene059124.t1 MTR_1g008590 96.000 325 13 0 1 325 1 325 0.0 621
MS.gene059124.t1 MTR_1g008510 75.380 329 74 5 1 325 1 326 8.27e-179 497
MS.gene059124.t1 MTR_1g008560 73.653 334 75 6 1 325 1 330 1.68e-175 489
MS.gene059124.t1 MTR_1g008500 64.010 389 72 7 1 325 1 385 2.47e-165 466
MS.gene059124.t1 MTR_1g008470 63.190 326 93 5 1 325 1 300 1.94e-142 404
MS.gene059124.t1 MTR_3g109490 59.633 327 121 6 1 323 1 320 2.11e-140 400
MS.gene059124.t1 MTR_1g008450 61.976 334 97 7 1 325 1 313 2.98e-139 397
MS.gene059124.t1 MTR_1g008460 59.394 330 96 7 1 325 1 297 1.43e-126 364
MS.gene059124.t1 MTR_1g008530 77.169 219 47 2 110 325 6 224 3.16e-123 353
MS.gene059124.t1 MTR_1g008580 79.412 170 34 1 155 323 1 170 1.33e-97 286
MS.gene059124.t1 MTR_3g107830 42.411 224 122 4 108 325 34 256 6.49e-56 182
MS.gene059124.t1 MTR_4g069680 42.857 224 121 5 108 325 65 287 1.70e-54 180
MS.gene059124.t1 MTR_3g116410 40.179 224 127 4 108 325 54 276 2.89e-53 176
MS.gene059124.t1 MTR_3g116380 42.342 222 120 6 108 323 82 301 4.36e-53 177
MS.gene059124.t1 MTR_1g008420 48.438 192 76 5 9 178 9 199 9.62e-45 152
MS.gene059124.t1 MTR_3g116270 38.605 215 124 4 113 322 292 503 4.40e-44 158
MS.gene059124.t1 MTR_3g116320 39.070 215 123 4 113 322 474 685 1.37e-43 159
MS.gene059124.t1 MTR_4g069040 36.441 236 139 7 95 323 277 508 7.46e-42 152
MS.gene059124.t1 MTR_4g069570 37.156 218 127 6 113 323 120 334 8.90e-42 148
MS.gene059124.t1 MTR_4g069550 36.697 218 128 6 113 323 247 461 4.19e-40 146
MS.gene059124.t1 MTR_8g064500 36.574 216 127 5 113 322 159 370 2.26e-38 140
MS.gene059124.t1 MTR_2g081610 29.846 325 152 13 4 323 5 258 1.82e-37 135
MS.gene059124.t1 MTR_4g069520 35.321 218 131 6 113 323 507 721 1.09e-35 137
MS.gene059124.t1 MTR_4g069520 35.321 218 131 6 113 323 493 707 1.57e-35 136
MS.gene059124.t1 MTR_2g081590 29.595 321 158 11 4 323 5 258 2.85e-35 129
MS.gene059124.t1 MTR_5g034320 33.333 213 138 4 113 322 415 626 7.36e-35 134
MS.gene059124.t1 MTR_8g064560 34.579 214 134 4 113 322 412 623 1.96e-34 133
MS.gene059124.t1 MTR_8g046000 38.073 218 103 9 112 323 30 221 1.06e-33 124
MS.gene059124.t1 MTR_2g081770 28.571 301 148 10 26 323 33 269 3.32e-33 124
MS.gene059124.t1 MTR_8g445170 40.260 154 86 4 170 323 235 382 4.00e-33 126
MS.gene059124.t1 MTR_8g045890 44.755 143 73 4 181 323 294 430 1.16e-32 126
MS.gene059124.t1 MTR_3g078090 33.953 215 134 4 113 322 413 624 1.88e-32 127
MS.gene059124.t1 MTR_8g045890 44.755 143 73 4 181 323 335 471 2.05e-32 125
MS.gene059124.t1 MTR_8g045890 44.755 143 73 4 181 323 372 508 2.26e-32 126
MS.gene059124.t1 MTR_8g445140 41.958 143 77 4 181 323 165 301 3.09e-32 122
MS.gene059124.t1 MTR_8g064530 33.333 213 138 4 113 322 429 640 8.12e-32 125
MS.gene059124.t1 MTR_6g086530 33.493 209 128 7 125 325 1 206 1.00e-31 118
MS.gene059124.t1 MTR_1g045860 27.914 326 164 10 1 323 1 258 3.43e-31 118
MS.gene059124.t1 MTR_4g133840 32.447 188 109 4 138 322 14 186 2.04e-30 114
MS.gene059124.t1 MTR_8g045880 42.759 145 77 4 179 323 175 313 1.11e-29 115
MS.gene059124.t1 MTR_8g045880 42.759 145 77 4 179 323 210 348 1.73e-29 116
MS.gene059124.t1 MTR_8g045880 42.759 145 77 4 179 323 212 350 2.17e-29 115
MS.gene059124.t1 MTR_8g044290 29.412 323 172 15 14 289 19 332 9.60e-25 104
MS.gene059124.t1 MTR_5g033340 26.852 216 152 4 111 322 164 377 4.19e-22 95.9
MS.gene059124.t1 MTR_5g033340 28.378 148 101 3 162 306 8 153 1.18e-12 68.6
MS.gene059124.t1 MTR_4g068420 35.556 135 68 5 192 323 1 119 2.11e-21 88.6
MS.gene059124.t1 MTR_5g033350 27.660 188 130 4 139 322 13 198 3.54e-19 84.7
MS.gene059124.t1 MTR_5g033330 25.926 216 154 4 111 322 403 616 4.17e-19 88.6
MS.gene059124.t1 MTR_5g033330 26.500 200 141 4 111 306 195 392 9.48e-17 81.3
MS.gene059124.t1 MTR_5g033330 26.744 172 120 4 139 306 15 184 7.64e-13 69.7
MS.gene059124.t1 MTR_8g075930 43.038 79 41 2 238 313 10 87 3.62e-17 75.9
MS.gene059124.t1 MTR_5g033360 25.116 215 139 5 111 322 25 220 3.52e-16 76.6
MS.gene059124.t1 MTR_5g033430 32.941 85 55 2 240 322 24 108 9.73e-12 61.6
MS.gene059124.t1 MTR_5g033440 32.558 86 56 2 240 323 24 109 2.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059124.t1 AT5G25610 44.103 390 141 11 5 323 7 390 6.88e-100 300
MS.gene059124.t1 AT1G49320 37.662 231 132 6 106 325 51 280 3.08e-47 160
MS.gene059124.t1 AT1G60390 36.111 216 128 5 113 322 409 620 6.90e-35 134
MS.gene059124.t1 AT1G70370 35.514 214 132 4 113 322 411 622 1.08e-33 130
MS.gene059124.t1 AT1G70370 35.514 214 132 4 113 322 411 622 1.08e-33 130
MS.gene059124.t1 AT1G23760 34.112 214 135 4 113 322 407 618 5.46e-31 123

Find 67 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGAAATGCCAAATGTTT+TGG 0.214978 1.2:+11230317 None:intergenic
AAATGTAGCACTCTTCTTTC+TGG 0.227762 1.2:-11230873 MS.gene059124:CDS
TCTTACCTCCTCAACTTTAC+TGG 0.262120 1.2:-11231704 MS.gene059124:CDS
ATTTATCTGAAGCTGGATAT+TGG 0.302370 1.2:-11231060 MS.gene059124:intron
GCAGCATAATTATAAATAAA+TGG 0.303775 1.2:+11230923 None:intergenic
TGTAACATCATTGGAGTCTA+TGG 0.322922 1.2:-11230618 MS.gene059124:CDS
TGCCTGAGGATCATGTTGTT+TGG 0.331746 1.2:-11230253 MS.gene059124:CDS
AGCAGATTAGTGATGGCTTT+TGG 0.347892 1.2:+11231654 None:intergenic
TTCCACCTTGTTTGATGAAA+AGG 0.348656 1.2:+11230751 None:intergenic
TAAAGCTTACTCTGTGCCTT+TGG 0.361974 1.2:-11230405 MS.gene059124:CDS
AAAGCTTTGTGTAACATCAT+TGG 0.398015 1.2:-11230627 MS.gene059124:CDS
TGACAGTAAAACACTGCATA+AGG 0.401155 1.2:+11230443 None:intergenic
AGCTTACTCTGTGCCTTTGG+AGG 0.418522 1.2:-11230402 MS.gene059124:CDS
TCAGGCAGGAGGTGACAAAC+TGG 0.434507 1.2:+11230269 None:intergenic
AGAAAGAAGAGTGCTACATT+TGG 0.440436 1.2:+11230875 None:intergenic
CAGCAATATACAATAGCATC+TGG 0.447095 1.2:-11230521 MS.gene059124:CDS
GTGCCTTTGGAGGGTGCTGA+TGG 0.447611 1.2:-11230392 MS.gene059124:CDS
TCCACCTTGTTTGATGAAAA+GGG 0.448369 1.2:+11230752 None:intergenic
AGAATGGAACCCAAAACATT+TGG 0.452431 1.2:-11230327 MS.gene059124:CDS
AGCACTCTTCTTTCTGGAAA+AGG 0.453598 1.2:-11230867 MS.gene059124:CDS
TCAAATGTAGCTTGTGGTAG+TGG 0.457950 1.2:-11231742 MS.gene059124:intron
CTGGAAAAGGACTTGCATCA+TGG 0.459024 1.2:-11230854 MS.gene059124:CDS
GATTTCACTACTTCAAAGCT+TGG 0.470526 1.2:-11230593 MS.gene059124:CDS
GCTTACTCTGTGCCTTTGGA+GGG 0.480708 1.2:-11230401 MS.gene059124:CDS
TGTGAAGAGCAAGGGATCAA+AGG 0.490839 1.2:-11230656 MS.gene059124:CDS
CAAGTACTCAAAGTTCAACC+TGG 0.499411 1.2:-11230299 MS.gene059124:CDS
GCATCTGGAGTGAAGAAGTT+GGG 0.513820 1.2:-11230506 MS.gene059124:CDS
ATCCAAACAACATGATCCTC+AGG 0.517927 1.2:+11230251 None:intergenic
GGAGTGAAGAGAAAGGAACT+TGG 0.518251 1.2:-11231039 MS.gene059124:CDS
GTCAGAAAGGGATACTATGA+AGG 0.523139 1.2:-11230983 MS.gene059124:CDS
GACAGTAAAACACTGCATAA+GGG 0.527238 1.2:+11230444 None:intergenic
GGCAAGGGTGGTGTAGATGT+TGG 0.529745 1.2:-11231007 MS.gene059124:CDS
AAAATCAAGAAAGGGTCAAA+GGG 0.531552 1.2:-11230710 MS.gene059124:CDS
AGCATCTGGAGTGAAGAAGT+TGG 0.536857 1.2:-11230507 MS.gene059124:CDS
TGTAGATGTTGGAGTCAGAA+AGG 0.539383 1.2:-11230996 MS.gene059124:CDS
CATTGAAGAGGTGGGAAGCA+TGG 0.540494 1.2:+11231677 None:intergenic
TGACAAACTGGAACAGTCCC+AGG 0.541759 1.2:+11230281 None:intergenic
AAAGGAACTTGGGTGGATGT+AGG 0.554611 1.2:-11231028 MS.gene059124:CDS
GGATATTGGAGTGAAGAGAA+AGG 0.556237 1.2:-11231046 MS.gene059124:CDS
AACTTGGGTGGATGTAGGCA+AGG 0.557293 1.2:-11231023 MS.gene059124:CDS
AGTTTGTCACCTCCTGCCTG+AGG 0.562196 1.2:-11230267 MS.gene059124:CDS
GTAGATGTTGGAGTCAGAAA+GGG 0.562316 1.2:-11230995 MS.gene059124:CDS
GTCAGTGAGTGTGAAGAGCA+AGG 0.568006 1.2:-11230665 MS.gene059124:CDS
CTTCCATCAGCACCCTCCAA+AGG 0.576677 1.2:+11230389 None:intergenic
TGAAGAGAAAGGAACTTGGG+TGG 0.577433 1.2:-11231035 MS.gene059124:CDS
TTGCTCTTCACACTCACTGA+CGG 0.578201 1.2:+11230667 None:intergenic
TGGGTGGATGTAGGCAAGGG+TGG 0.579389 1.2:-11231019 MS.gene059124:CDS
GAGTGAAGAGAAAGGAACTT+GGG 0.579403 1.2:-11231038 MS.gene059124:CDS
GGTGGCACTGATGTGAATGT+TGG 0.587969 1.2:-11230959 MS.gene059124:CDS
TCAGTGAGTGTGAAGAGCAA+GGG 0.599484 1.2:-11230664 MS.gene059124:CDS
AACTTGGCGCGGCAAGAATG+TGG 0.603165 1.2:+11230787 None:intergenic
GACTTCCAGTAAAGTTGAGG+AGG 0.605659 1.2:+11231699 None:intergenic
GTCACACTGATACATCAGAA+TGG 0.606500 1.2:-11230343 MS.gene059124:CDS
AAGGGATACTATGAAGGAGG+TGG 0.607188 1.2:-11230977 MS.gene059124:CDS
AAACAACATGATCCTCAGGC+AGG 0.608017 1.2:+11230255 None:intergenic
ATGGACTTCCAGTAAAGTTG+AGG 0.616898 1.2:+11231696 None:intergenic
AGGGTATTGAATTAGCAACT+TGG 0.619732 1.2:+11230771 None:intergenic
AAGTACTCAAAGTTCAACCT+GGG 0.622856 1.2:-11230298 MS.gene059124:CDS
AGGGTGTAGCAGATTAGTGA+TGG 0.623388 1.2:+11231647 None:intergenic
ATTGAATTAGCAACTTGGCG+CGG 0.637675 1.2:+11230776 None:intergenic
ACTGATGTGAATGTTGGAGT+TGG 0.647770 1.2:-11230953 MS.gene059124:CDS
CAACATGATCCTCAGGCAGG+AGG 0.654087 1.2:+11230258 None:intergenic
ACTTGGGTGGATGTAGGCAA+GGG 0.659855 1.2:-11231022 MS.gene059124:CDS
GAATGTGGCTGCATTTGAAG+TGG 0.663147 1.2:+11230802 None:intergenic
ATCACTAATCTGCTACACCC+TGG 0.665412 1.2:-11231645 MS.gene059124:intron
AGAGCAAGGGATCAAAGGAG+AGG 0.677572 1.2:-11230651 MS.gene059124:CDS
AGAAAGGGATACTATGAAGG+AGG 0.679610 1.2:-11230980 MS.gene059124:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAATAAAAAGTCTA+TGG - chr1.2:11230976-11230995 MS.gene059124:CDS 10.0%
!! AAATAAATAAACCAAGTAAT+TGG - chr1.2:11230842-11230861 MS.gene059124:CDS 15.0%
!! AATAAATAAACCAAGTAATT+GGG - chr1.2:11230843-11230862 MS.gene059124:CDS 15.0%
!! GTTAATTATTTGAAGAAAAT+TGG + chr1.2:11230308-11230327 None:intergenic 15.0%
!!! ATACTCATTTTATATATAGA+TGG - chr1.2:11230540-11230559 MS.gene059124:CDS 15.0%
!!! GTTTAAAATGATTTCATTTT+AGG - chr1.2:11230579-11230598 MS.gene059124:CDS 15.0%
!! AACAAGTTAAAAATCAAGAA+AGG - chr1.2:11231394-11231413 MS.gene059124:intron 20.0%
!! ACAAGTTAAAAATCAAGAAA+GGG - chr1.2:11231395-11231414 MS.gene059124:intron 20.0%
!! ACCATGAAAAAATTAATGAT+GGG + chr1.2:11230262-11230281 None:intergenic 20.0%
!! GCAGCATAATTATAAATAAA+TGG + chr1.2:11231193-11231212 None:intergenic 20.0%
!!! ATGAAATCATTTTAAACACA+TGG + chr1.2:11230576-11230595 None:intergenic 20.0%
! AAAGGACTTATGATATATGA+AGG - chr1.2:11230809-11230828 MS.gene059124:CDS 25.0%
! ATTTAATTCATGCACATTGT+CGG - chr1.2:11230602-11230621 MS.gene059124:CDS 25.0%
! CACCATGAAAAAATTAATGA+TGG + chr1.2:11230263-11230282 None:intergenic 25.0%
!!! TATTTTTTGTGTTAACTCTC+CGG + chr1.2:11230956-11230975 None:intergenic 25.0%
!!! TCCCATCATTAATTTTTTCA+TGG - chr1.2:11230258-11230277 MS.gene059124:CDS 25.0%
AAAAATCAAGAAAGGGTCAA+AGG - chr1.2:11231402-11231421 MS.gene059124:intron 30.0%
AAAATCAAGAAAGGGTCAAA+GGG - chr1.2:11231403-11231422 MS.gene059124:intron 30.0%
AAAGCTTGGAAAAAATGTTG+AGG - chr1.2:11231534-11231553 MS.gene059124:intron 30.0%
TTGAATTATTCGTCATAGAG+AGG + chr1.2:11230886-11230905 None:intergenic 30.0%
! AAAGCTTTGTGTAACATCAT+TGG - chr1.2:11231486-11231505 MS.gene059124:intron 30.0%
! AATACCCTTTTCATCAAACA+AGG - chr1.2:11231357-11231376 MS.gene059124:intron 30.0%
! ACTTGAAATGCCAAATGTTT+TGG + chr1.2:11231799-11231818 None:intergenic 30.0%
! ATTTATCTGAAGCTGGATAT+TGG - chr1.2:11231053-11231072 MS.gene059124:intron 30.0%
! CTTGAAATGCCAAATGTTTT+GGG + chr1.2:11231798-11231817 None:intergenic 30.0%
! TTACTCTATTTATCTGAAGC+TGG - chr1.2:11231046-11231065 MS.gene059124:CDS 30.0%
!!! ATTTTTTGTGTTAACTCTCC+GGG + chr1.2:11230955-11230974 None:intergenic 30.0%
AAATGTAGCACTCTTCTTTC+TGG - chr1.2:11231240-11231259 MS.gene059124:intron 35.0%
AAGTACTCAAAGTTCAACCT+GGG - chr1.2:11231815-11231834 MS.gene059124:intron 35.0%
ACCAAGTAATTGGGTTTAAG+TGG - chr1.2:11230852-11230871 MS.gene059124:CDS 35.0%
ACCACTTAAACCCAATTACT+TGG + chr1.2:11230856-11230875 None:intergenic 35.0%
AGAATGGAACCCAAAACATT+TGG - chr1.2:11231786-11231805 MS.gene059124:intron 35.0%
CAGCAATATACAATAGCATC+TGG - chr1.2:11231592-11231611 MS.gene059124:intron 35.0%
CTAGACTATGATACTAACCA+GGG + chr1.2:11230488-11230507 None:intergenic 35.0%
CTATTCTCAAATGTAGCTTG+TGG - chr1.2:11230365-11230384 MS.gene059124:CDS 35.0%
GACAGTAAAACACTGCATAA+GGG + chr1.2:11231672-11231691 None:intergenic 35.0%
GATTTCACTACTTCAAAGCT+TGG - chr1.2:11231520-11231539 MS.gene059124:intron 35.0%
TCAGATGATCTCTATCAGAA+AGG - chr1.2:11230791-11230810 MS.gene059124:CDS 35.0%
TCTAGACTATGATACTAACC+AGG + chr1.2:11230489-11230508 None:intergenic 35.0%
TGACAGTAAAACACTGCATA+AGG + chr1.2:11231673-11231692 None:intergenic 35.0%
TGTAACATCATTGGAGTCTA+TGG - chr1.2:11231495-11231514 MS.gene059124:intron 35.0%
! TCCACCTTGTTTGATGAAAA+GGG + chr1.2:11231364-11231383 None:intergenic 35.0%
! TTCCACCTTGTTTGATGAAA+AGG + chr1.2:11231365-11231384 None:intergenic 35.0%
!! AGAAAGAAGAGTGCTACATT+TGG + chr1.2:11231241-11231260 None:intergenic 35.0%
!! AGGGTATTGAATTAGCAACT+TGG + chr1.2:11231345-11231364 None:intergenic 35.0%
!!! TTTTTTGTGTTAACTCTCCG+GGG + chr1.2:11230954-11230973 None:intergenic 35.0%
ACTGATGTGAATGTTGGAGT+TGG - chr1.2:11231160-11231179 MS.gene059124:intron 40.0%
AGAAAGGGATACTATGAAGG+AGG - chr1.2:11231133-11231152 MS.gene059124:intron 40.0%
ATCCAAACAACATGATCCTC+AGG + chr1.2:11231865-11231884 None:intergenic 40.0%
ATGGACTTCCAGTAAAGTTG+AGG + chr1.2:11230420-11230439 None:intergenic 40.0%
ATTGAATTAGCAACTTGGCG+CGG + chr1.2:11231340-11231359 None:intergenic 40.0%
CAAGTACTCAAAGTTCAACC+TGG - chr1.2:11231814-11231833 MS.gene059124:intron 40.0%
GAGTGAAGAGAAAGGAACTT+GGG - chr1.2:11231075-11231094 MS.gene059124:intron 40.0%
GGATATTGGAGTGAAGAGAA+AGG - chr1.2:11231067-11231086 MS.gene059124:intron 40.0%
GTAGATGTTGGAGTCAGAAA+GGG - chr1.2:11231118-11231137 MS.gene059124:intron 40.0%
GTCACACTGATACATCAGAA+TGG - chr1.2:11231770-11231789 MS.gene059124:intron 40.0%
GTCAGAAAGGGATACTATGA+AGG - chr1.2:11231130-11231149 MS.gene059124:intron 40.0%
TAAAGCTTACTCTGTGCCTT+TGG - chr1.2:11231708-11231727 MS.gene059124:CDS 40.0%
TCTTACCTCCTCAACTTTAC+TGG - chr1.2:11230409-11230428 MS.gene059124:CDS 40.0%
TGTAGATGTTGGAGTCAGAA+AGG - chr1.2:11231117-11231136 MS.gene059124:intron 40.0%
! ACCCTTTTCATCAAACAAGG+TGG - chr1.2:11231360-11231379 MS.gene059124:intron 40.0%
! AGCACTCTTCTTTCTGGAAA+AGG - chr1.2:11231246-11231265 MS.gene059124:intron 40.0%
! AGCAGATTAGTGATGGCTTT+TGG + chr1.2:11230462-11230481 None:intergenic 40.0%
! TCAAATGTAGCTTGTGGTAG+TGG - chr1.2:11230371-11230390 MS.gene059124:CDS 40.0%
AAACAACATGATCCTCAGGC+AGG + chr1.2:11231861-11231880 None:intergenic 45.0%
AAAGGAACTTGGGTGGATGT+AGG - chr1.2:11231085-11231104 MS.gene059124:intron 45.0%
AAGGGATACTATGAAGGAGG+TGG - chr1.2:11231136-11231155 MS.gene059124:intron 45.0%
AGGGTGTAGCAGATTAGTGA+TGG + chr1.2:11230469-11230488 None:intergenic 45.0%
ATCACTAATCTGCTACACCC+TGG - chr1.2:11230468-11230487 MS.gene059124:CDS 45.0%
CTGGAAAAGGACTTGCATCA+TGG - chr1.2:11231259-11231278 MS.gene059124:intron 45.0%
GAATGTGGCTGCATTTGAAG+TGG + chr1.2:11231314-11231333 None:intergenic 45.0%
GACTTCCAGTAAAGTTGAGG+AGG + chr1.2:11230417-11230436 None:intergenic 45.0%
GGAGTGAAGAGAAAGGAACT+TGG - chr1.2:11231074-11231093 MS.gene059124:intron 45.0%
TCAGTGAGTGTGAAGAGCAA+GGG - chr1.2:11231449-11231468 MS.gene059124:intron 45.0%
TGAAGAGAAAGGAACTTGGG+TGG - chr1.2:11231078-11231097 MS.gene059124:intron 45.0%
TGCCTGAGGATCATGTTGTT+TGG - chr1.2:11231860-11231879 MS.gene059124:CDS 45.0%
TGTGAAGAGCAAGGGATCAA+AGG - chr1.2:11231457-11231476 MS.gene059124:intron 45.0%
TTGCTCTTCACACTCACTGA+CGG + chr1.2:11231449-11231468 None:intergenic 45.0%
! AGCATCTGGAGTGAAGAAGT+TGG - chr1.2:11231606-11231625 MS.gene059124:intron 45.0%
! GCATCTGGAGTGAAGAAGTT+GGG - chr1.2:11231607-11231626 MS.gene059124:intron 45.0%
!! GATGGCTTTTGGCATTGAAG+AGG + chr1.2:11230451-11230470 None:intergenic 45.0%
!! GCTTTTGGCATTGAAGAGGT+GGG + chr1.2:11230447-11230466 None:intergenic 45.0%
AACTTGGGTGGATGTAGGCA+AGG - chr1.2:11231090-11231109 MS.gene059124:intron 50.0%
ACTTGGGTGGATGTAGGCAA+GGG - chr1.2:11231091-11231110 MS.gene059124:intron 50.0%
AGAGCAAGGGATCAAAGGAG+AGG - chr1.2:11231462-11231481 MS.gene059124:intron 50.0%
AGCTTACTCTGTGCCTTTGG+AGG - chr1.2:11231711-11231730 MS.gene059124:CDS 50.0%
CATTGAAGAGGTGGGAAGCA+TGG + chr1.2:11230439-11230458 None:intergenic 50.0%
GCTTACTCTGTGCCTTTGGA+GGG - chr1.2:11231712-11231731 MS.gene059124:CDS 50.0%
GGAAGGGGGTCATAGTAATC+AGG + chr1.2:11230924-11230943 None:intergenic 50.0%
GTCAGTGAGTGTGAAGAGCA+AGG - chr1.2:11231448-11231467 MS.gene059124:intron 50.0%
GTTAACTCTCCGGGGTCTAA+GGG + chr1.2:11230946-11230965 None:intergenic 50.0%
TGACAAACTGGAACAGTCCC+AGG + chr1.2:11231835-11231854 None:intergenic 50.0%
TGTTAACTCTCCGGGGTCTA+AGG + chr1.2:11230947-11230966 None:intergenic 50.0%
TTAACTCTCCGGGGTCTAAG+GGG + chr1.2:11230945-11230964 None:intergenic 50.0%
!! GGCTTTTGGCATTGAAGAGG+TGG + chr1.2:11230448-11230467 None:intergenic 50.0%
!! GGTGGCACTGATGTGAATGT+TGG - chr1.2:11231154-11231173 MS.gene059124:intron 50.0%
AACTTGGCGCGGCAAGAATG+TGG + chr1.2:11231329-11231348 None:intergenic 55.0%
AGTTTGTCACCTCCTGCCTG+AGG - chr1.2:11231846-11231865 MS.gene059124:intron 55.0%
CAACATGATCCTCAGGCAGG+AGG + chr1.2:11231858-11231877 None:intergenic 55.0%
CTTCCATCAGCACCCTCCAA+AGG + chr1.2:11231727-11231746 None:intergenic 55.0%
GGCAAGGGTGGTGTAGATGT+TGG - chr1.2:11231106-11231125 MS.gene059124:intron 55.0%
TCAGGCAGGAGGTGACAAAC+TGG + chr1.2:11231847-11231866 None:intergenic 55.0%
TCTCCGGGGTCTAAGGGGAA+GGG + chr1.2:11230940-11230959 None:intergenic 60.0%
TGGGTGGATGTAGGCAAGGG+TGG - chr1.2:11231094-11231113 MS.gene059124:intron 60.0%
!! GTGCCTTTGGAGGGTGCTGA+TGG - chr1.2:11231721-11231740 MS.gene059124:CDS 60.0%
ACCCCCTTCCCCTTAGACCC+CGG - chr1.2:11230934-11230953 MS.gene059124:CDS 65.0%
CTCCGGGGTCTAAGGGGAAG+GGG + chr1.2:11230939-11230958 None:intergenic 65.0%
CTCTCCGGGGTCTAAGGGGA+AGG + chr1.2:11230941-11230960 None:intergenic 65.0%
TCCGGGGTCTAAGGGGAAGG+GGG + chr1.2:11230938-11230957 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11230241 11231894 11230241 ID=MS.gene059124
chr1.2 mRNA 11230241 11231894 11230241 ID=MS.gene059124.t1;Parent=MS.gene059124
chr1.2 exon 11231856 11231894 11231856 ID=MS.gene059124.t1.exon1;Parent=MS.gene059124.t1
chr1.2 CDS 11231856 11231894 11231856 ID=cds.MS.gene059124.t1;Parent=MS.gene059124.t1
chr1.2 exon 11231646 11231754 11231646 ID=MS.gene059124.t1.exon2;Parent=MS.gene059124.t1
chr1.2 CDS 11231646 11231754 11231646 ID=cds.MS.gene059124.t1;Parent=MS.gene059124.t1
chr1.2 exon 11230241 11231070 11230241 ID=MS.gene059124.t1.exon3;Parent=MS.gene059124.t1
chr1.2 CDS 11230241 11231070 11230241 ID=cds.MS.gene059124.t1;Parent=MS.gene059124.t1
Gene Sequence

>MS.gene059124

ATGGATTTTCATCTTGTTCCCATCATTAATTTTTTCATGGTGAGCTTCAACTACATAAATTCAACCAATTTTCTTCAAATAATTAACTATTTGCTTGTCAAGATAATAATTTACTAATGTTAAACTATTCTCAAATGTAGCTTGTGGTAGTGGCAACTAATGCTGCAATCTTACCTCCTCAACTTTACTGGAAGTCCATGCTTCCCACCTCTTCAATGCCAAAAGCCATCACTAATCTGCTACACCCTGGTTAGTATCATAGTCTAGAACTGATGTCTATATAATATCTGAAAATTCTCATACTCATTTTATATATAGATGGAATTTTACTTCCATGTGTTTAAAATGATTTCATTTTAGGATTTAATTCATGCACATTGTCGGTGTAAAAAGAAAATTATATTGTCAAACAATTCTAATAATCAAATTATTAATAACATTTGACTTTAATCATAACTACTTCAAAAATCACACATATGATTAATTGTACTTTGTTCACAGTGTAAAACTTTTAACACTAACAATGTATCAGAACTAAATCTTATTTCTATCAGATGATCTCTATCAGAAAGGACTTATGATATATGAAGGACTAAATTTAAAATAAATAAACCAAGTAATTGGGTTTAAGTGGTTAATGAGCCTCTCTATGACGAATAATTCAATCATATGATTGAACTCCTGATTACTATGACCCCCTTCCCCTTAGACCCCGGAGAGTTAACACAAAAAATATTAAATAAATAAAAAGTCTATGGATCAAAAAGTAAAAATAACTATTGTATAAATTTTAATATATTTCAATTTACTCTATTTATCTGAAGCTGGATATTGGAGTGAAGAGAAAGGAACTTGGGTGGATGTAGGCAAGGGTGGTGTAGATGTTGGAGTCAGAAAGGGATACTATGAAGGAGGTGGCACTGATGTGAATGTTGGAGTTGGACGTTCTCCATTTATTTATAATTATGCTGCAAGTGAGACTCAGTTACATGATAAACCAAATGTAGCACTCTTCTTTCTGGAAAAGGACTTGCATCATGGAACAAAACTGAACTTGCAATTCACTAAGACCACTTCAAATGCAGCCACATTCTTGCCGCGCCAAGTTGCTAATTCAATACCCTTTTCATCAAACAAGGTGGAATACATAATCAACAAGTTAAAAATCAAGAAAGGGTCAAAGGGTGCTCAGATTGTGAAGAACACCGTCAGTGAGTGTGAAGAGCAAGGGATCAAAGGAGAGGAAAAGCTTTGTGTAACATCATTGGAGTCTATGGTTGATTTCACTACTTCAAAGCTTGGAAAAAATGTTGAGGCTGTTTCAACAGAAGTGAACAAAGAAAGTAATTTACAGCAATATACAATAGCATCTGGAGTGAAGAAGTTGGGTGAGAAGAACAAAGCTGTTGTGTGTCACAAAGAGAATTACCCTTATGCAGTGTTTTACTGTCACAAAACAGATACAACTAAAGCTTACTCTGTGCCTTTGGAGGGTGCTGATGGAAGCAGAGTTAAAGCTATTGCTGTGTGTCACACTGATACATCAGAATGGAACCCAAAACATTTGGCATTTCAAGTACTCAAAGTTCAACCTGGGACTGTTCCAGTTTGTCACCTCCTGCCTGAGGATCATGTTGTTTGGATTCGCAAGTAG

Protein sequence

>MS.gene059124.t1

MDFHLVPIINFFMLVVVATNAAILPPQLYWKSMLPTSSMPKAITNLLHPAGYWSEEKGTWVDVGKGGVDVGVRKGYYEGGGTDVNVGVGRSPFIYNYAASETQLHDKPNVALFFLEKDLHHGTKLNLQFTKTTSNAATFLPRQVANSIPFSSNKVEYIINKLKIKKGSKGAQIVKNTVSECEEQGIKGEEKLCVTSLESMVDFTTSKLGKNVEAVSTEVNKESNLQQYTIASGVKKLGEKNKAVVCHKENYPYAVFYCHKTDTTKAYSVPLEGADGSRVKAIAVCHTDTSEWNPKHLAFQVLKVQPGTVPVCHLLPEDHVVWIRK