Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07909.t1 | KEH18476.1 | 91.8 | 183 | 15 | 0 | 1 | 183 | 26 | 208 | 1.30E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07909.t1 | Q9SPV4 | 55.5 | 182 | 71 | 4 | 4 | 183 | 29 | 202 | 4.6e-49 | 195.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07909.t1 | G7L6V5 | 91.8 | 183 | 15 | 0 | 1 | 183 | 26 | 208 | 9.2e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene07909 | 0.849571 | 2.97E-60 | -1.69E-46 |
| MS.gene051131 | MS.gene07909 | 0.916187 | 2.41E-85 | -1.69E-46 |
| MS.gene059955 | MS.gene07909 | 0.818479 | 1.92E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07909.t1 | MTR_8g020700 | 91.803 | 183 | 15 | 0 | 1 | 183 | 26 | 208 | 1.14e-121 | 344 |
| MS.gene07909.t1 | MTR_8g020700 | 91.803 | 183 | 15 | 0 | 1 | 183 | 26 | 208 | 5.80e-121 | 346 |
| MS.gene07909.t1 | MTR_8g020690 | 78.689 | 183 | 39 | 0 | 1 | 183 | 26 | 208 | 1.09e-104 | 305 |
| MS.gene07909.t1 | MTR_3g467270 | 71.271 | 181 | 52 | 0 | 3 | 183 | 27 | 207 | 4.65e-97 | 286 |
| MS.gene07909.t1 | MTR_8g076900 | 72.376 | 181 | 50 | 0 | 3 | 183 | 28 | 208 | 5.55e-96 | 279 |
| MS.gene07909.t1 | MTR_4g018820 | 71.823 | 181 | 51 | 0 | 3 | 183 | 28 | 208 | 1.78e-95 | 281 |
| MS.gene07909.t1 | MTR_8g076900 | 74.011 | 177 | 46 | 0 | 7 | 183 | 32 | 208 | 1.57e-94 | 279 |
| MS.gene07909.t1 | MTR_6g056070 | 68.508 | 181 | 57 | 0 | 3 | 183 | 29 | 209 | 2.28e-90 | 268 |
| MS.gene07909.t1 | MTR_8g077040 | 68.508 | 181 | 57 | 0 | 3 | 183 | 28 | 208 | 5.72e-90 | 268 |
| MS.gene07909.t1 | MTR_5g020940 | 62.637 | 182 | 67 | 1 | 3 | 183 | 38 | 219 | 1.55e-85 | 256 |
| MS.gene07909.t1 | MTR_8g077030 | 56.667 | 180 | 56 | 2 | 4 | 183 | 29 | 186 | 3.18e-63 | 203 |
| MS.gene07909.t1 | MTR_3g117060 | 50.276 | 181 | 84 | 1 | 7 | 181 | 32 | 212 | 3.16e-62 | 197 |
| MS.gene07909.t1 | MTR_5g046110 | 45.745 | 188 | 96 | 1 | 2 | 183 | 87 | 274 | 9.98e-52 | 171 |
| MS.gene07909.t1 | MTR_3g467560 | 46.629 | 178 | 89 | 2 | 10 | 181 | 59 | 236 | 2.29e-50 | 167 |
| MS.gene07909.t1 | MTR_7g084620 | 46.154 | 182 | 87 | 4 | 7 | 180 | 32 | 210 | 1.99e-46 | 156 |
| MS.gene07909.t1 | MTR_7g084350 | 41.848 | 184 | 101 | 2 | 3 | 180 | 26 | 209 | 4.35e-45 | 152 |
| MS.gene07909.t1 | MTR_1g022455 | 46.471 | 170 | 78 | 3 | 27 | 183 | 55 | 224 | 1.90e-39 | 138 |
| MS.gene07909.t1 | MTR_1g022465 | 43.878 | 196 | 94 | 4 | 4 | 183 | 29 | 224 | 1.82e-38 | 135 |
| MS.gene07909.t1 | MTR_1g108660 | 42.857 | 168 | 77 | 4 | 20 | 181 | 33 | 187 | 1.94e-36 | 129 |
| MS.gene07909.t1 | MTR_7g084330 | 39.326 | 178 | 97 | 5 | 10 | 179 | 18 | 192 | 1.84e-33 | 121 |
| MS.gene07909.t1 | MTR_3g054330 | 37.888 | 161 | 91 | 3 | 29 | 180 | 63 | 223 | 5.65e-31 | 115 |
| MS.gene07909.t1 | MTR_5g093900 | 38.788 | 165 | 91 | 4 | 25 | 180 | 69 | 232 | 1.82e-29 | 112 |
| MS.gene07909.t1 | MTR_3g052700 | 37.805 | 164 | 94 | 3 | 25 | 180 | 67 | 230 | 2.49e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07909.t1 | AT2G14060 | 47.879 | 165 | 83 | 1 | 18 | 182 | 49 | 210 | 5.34e-52 | 167 |
| MS.gene07909.t1 | AT5G04380 | 47.778 | 180 | 88 | 2 | 3 | 181 | 53 | 227 | 1.34e-51 | 169 |
| MS.gene07909.t1 | AT5G04380 | 51.592 | 157 | 71 | 1 | 25 | 181 | 9 | 160 | 1.49e-51 | 168 |
| MS.gene07909.t1 | AT5G04380 | 47.778 | 180 | 88 | 2 | 3 | 181 | 57 | 231 | 1.57e-51 | 170 |
| MS.gene07909.t1 | AT2G14060 | 48.171 | 164 | 82 | 1 | 18 | 181 | 49 | 209 | 9.23e-51 | 167 |
| MS.gene07909.t1 | AT3G21950 | 49.677 | 155 | 75 | 1 | 27 | 181 | 50 | 201 | 1.55e-50 | 167 |
| MS.gene07909.t1 | AT3G21950 | 50.327 | 153 | 73 | 1 | 27 | 179 | 50 | 199 | 2.90e-50 | 167 |
| MS.gene07909.t1 | AT5G04370 | 51.923 | 156 | 69 | 2 | 27 | 181 | 85 | 235 | 2.95e-50 | 167 |
| MS.gene07909.t1 | AT5G38020 | 46.369 | 179 | 92 | 2 | 4 | 181 | 26 | 201 | 5.03e-50 | 165 |
| MS.gene07909.t1 | AT5G04370 | 51.923 | 156 | 69 | 2 | 27 | 181 | 90 | 240 | 5.62e-50 | 166 |
| MS.gene07909.t1 | AT5G04370 | 51.923 | 156 | 69 | 2 | 27 | 181 | 104 | 254 | 5.62e-50 | 166 |
| MS.gene07909.t1 | AT5G38020 | 50.323 | 155 | 74 | 1 | 27 | 181 | 11 | 162 | 1.37e-49 | 163 |
| MS.gene07909.t1 | AT5G66430 | 47.742 | 155 | 76 | 1 | 27 | 181 | 45 | 194 | 1.63e-49 | 164 |
| MS.gene07909.t1 | AT3G11480 | 49.032 | 155 | 76 | 1 | 27 | 181 | 75 | 226 | 9.48e-49 | 162 |
| MS.gene07909.t1 | AT4G36470 | 45.078 | 193 | 89 | 4 | 2 | 181 | 30 | 218 | 5.08e-45 | 152 |
| MS.gene07909.t1 | AT1G19640 | 43.500 | 200 | 95 | 4 | 2 | 183 | 27 | 226 | 9.53e-39 | 136 |
| MS.gene07909.t1 | AT1G68040 | 41.818 | 165 | 79 | 3 | 24 | 183 | 58 | 210 | 4.76e-37 | 131 |
| MS.gene07909.t1 | AT3G44840 | 44.693 | 179 | 79 | 6 | 12 | 183 | 35 | 200 | 5.87e-34 | 123 |
| MS.gene07909.t1 | AT4G26420 | 37.696 | 191 | 99 | 7 | 4 | 183 | 33 | 214 | 2.73e-32 | 116 |
| MS.gene07909.t1 | AT4G26420 | 37.696 | 191 | 99 | 7 | 4 | 183 | 21 | 202 | 4.22e-32 | 116 |
| MS.gene07909.t1 | AT4G26420 | 37.696 | 191 | 99 | 7 | 4 | 183 | 33 | 214 | 3.39e-31 | 116 |
| MS.gene07909.t1 | AT3G44860 | 42.021 | 188 | 89 | 6 | 1 | 181 | 24 | 198 | 3.52e-31 | 115 |
| MS.gene07909.t1 | AT5G38100 | 42.515 | 167 | 71 | 7 | 29 | 183 | 58 | 211 | 3.73e-31 | 113 |
| MS.gene07909.t1 | AT5G38100 | 42.515 | 167 | 71 | 7 | 29 | 183 | 58 | 211 | 3.86e-31 | 113 |
| MS.gene07909.t1 | AT5G38780 | 40.964 | 166 | 78 | 5 | 28 | 183 | 9 | 164 | 1.59e-30 | 113 |
| MS.gene07909.t1 | AT5G38100 | 42.515 | 167 | 71 | 7 | 29 | 183 | 35 | 188 | 2.25e-30 | 113 |
| MS.gene07909.t1 | AT5G38780 | 40.964 | 166 | 78 | 5 | 28 | 183 | 58 | 213 | 2.88e-30 | 114 |
| MS.gene07909.t1 | AT5G37970 | 39.594 | 197 | 92 | 7 | 3 | 183 | 29 | 214 | 3.71e-30 | 113 |
| MS.gene07909.t1 | AT5G38100 | 42.515 | 167 | 71 | 7 | 29 | 183 | 58 | 211 | 4.46e-30 | 113 |
| MS.gene07909.t1 | AT3G44870 | 39.572 | 187 | 92 | 6 | 1 | 181 | 24 | 195 | 1.14e-29 | 112 |
| MS.gene07909.t1 | AT5G55250 | 36.025 | 161 | 95 | 3 | 31 | 183 | 32 | 192 | 1.22e-29 | 112 |
| MS.gene07909.t1 | AT5G55250 | 36.025 | 161 | 95 | 3 | 31 | 183 | 70 | 230 | 2.10e-29 | 112 |
| MS.gene07909.t1 | AT1G15125 | 39.752 | 161 | 78 | 5 | 29 | 182 | 48 | 196 | 2.39e-29 | 108 |
| MS.gene07909.t1 | AT1G66700 | 36.898 | 187 | 95 | 5 | 7 | 183 | 32 | 205 | 1.26e-28 | 107 |
| MS.gene07909.t1 | AT1G15125 | 39.752 | 161 | 78 | 5 | 29 | 182 | 48 | 196 | 1.88e-28 | 108 |
| MS.gene07909.t1 | AT1G66700 | 36.898 | 187 | 95 | 5 | 7 | 183 | 32 | 205 | 3.43e-28 | 108 |
| MS.gene07909.t1 | AT5G37990 | 38.579 | 197 | 94 | 8 | 3 | 183 | 29 | 214 | 7.97e-28 | 107 |
| MS.gene07909.t1 | AT5G56300 | 33.862 | 189 | 110 | 5 | 3 | 183 | 43 | 224 | 6.92e-27 | 105 |
| MS.gene07909.t1 | AT1G66720 | 36.207 | 174 | 91 | 4 | 16 | 181 | 42 | 203 | 7.50e-27 | 104 |
| MS.gene07909.t1 | AT1G66690 | 36.158 | 177 | 90 | 5 | 13 | 179 | 38 | 201 | 2.49e-24 | 97.8 |
Find 34 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGGCTTCATCTCTTAT+TGG | 0.171047 | 8.3:-70461569 | None:intergenic |
| AAATGAAATCAAAACTAAAA+TGG | 0.175532 | 8.3:+70461820 | MS.gene07909:CDS |
| ATGGGTCCTTGTTACTTCTT+TGG | 0.197736 | 8.3:+70461839 | MS.gene07909:CDS |
| TGTTACTTCTTTGGGGTTCC+TGG | 0.212711 | 8.3:+70461848 | MS.gene07909:CDS |
| AACCTTGCAATTGCAGATTT+AGG | 0.230846 | 8.3:+70461620 | MS.gene07909:CDS |
| TGGGTCCTTGTTACTTCTTT+GGG | 0.234467 | 8.3:+70461840 | MS.gene07909:CDS |
| GCAGATTTAGGTTGTTCTTC+TGG | 0.263073 | 8.3:+70461632 | MS.gene07909:CDS |
| TATAGGGAAATGCAGTTTCT+TGG | 0.287192 | 8.3:+70461540 | None:intergenic |
| TCAATTTAAAAGAGACTTCT+CGG | 0.358277 | 8.3:+70462337 | MS.gene07909:CDS |
| GAGATGAATGGTTCAATTGT+TGG | 0.392209 | 8.3:-70461709 | None:intergenic |
| ATTCCTCTTACAGCCTTCAT+TGG | 0.426219 | 8.3:+70461918 | MS.gene07909:CDS |
| TAGAAAGTGTGTTGGAGTAA+AGG | 0.429689 | 8.3:-70461595 | None:intergenic |
| AATGAAATCAAAACTAAAAT+GGG | 0.439241 | 8.3:+70461821 | MS.gene07909:CDS |
| TATGCTTTAACAACATTTGA+GGG | 0.450868 | 8.3:-70462308 | None:intergenic |
| ATGAAATGCAAACTTTGATC+AGG | 0.468189 | 8.3:-70461893 | None:intergenic |
| TTTGGTATCAGACATTATCA+TGG | 0.479161 | 8.3:+70461670 | MS.gene07909:CDS |
| GTTGGAGTAAAGGCTTGTTA+TGG | 0.479472 | 8.3:-70461585 | None:intergenic |
| CAGCCTTCATTGGCTATCAA+AGG | 0.487208 | 8.3:+70461928 | MS.gene07909:CDS |
| GTATGCTTTAACAACATTTG+AGG | 0.517154 | 8.3:-70462309 | None:intergenic |
| GGGTCCTTGTTACTTCTTTG+GGG | 0.519835 | 8.3:+70461841 | MS.gene07909:CDS |
| TAGCCAATGAAGGCTGTAAG+AGG | 0.535843 | 8.3:-70461921 | None:intergenic |
| CGTGCAGAGGAACTAGTTGA+AGG | 0.536965 | 8.3:+70462374 | MS.gene07909:CDS |
| TAACCTTTGATAGCCAATGA+AGG | 0.548055 | 8.3:-70461931 | None:intergenic |
| TCTTGTACTCGGGAGATGAA+TGG | 0.553449 | 8.3:-70461721 | None:intergenic |
| GTGCAGAGGAACTAGTTGAA+GGG | 0.554125 | 8.3:+70462375 | MS.gene07909:CDS |
| AACCTAAATCTGCAATTGCA+AGG | 0.554611 | 8.3:-70461622 | None:intergenic |
| TGTGTAGTTGATGTAAATGT+TGG | 0.562245 | 8.3:-70462282 | None:intergenic |
| TTATTGTTCTCTATACCCTC+CGG | 0.563075 | 8.3:-70462257 | None:intergenic |
| TGCAGAGGAACTAGTTGAAG+GGG | 0.594526 | 8.3:+70462376 | MS.gene07909:CDS |
| GGGAATTATTAGGTTCCGGA+GGG | 0.604890 | 8.3:+70462242 | MS.gene07909:intron |
| GGGGAATTATTAGGTTCCGG+AGG | 0.634746 | 8.3:+70462241 | MS.gene07909:intron |
| GGAACCCCAAAGAAGTAACA+AGG | 0.641016 | 8.3:-70461845 | None:intergenic |
| ACTCTGTTATAGAAAGAACC+AGG | 0.668917 | 8.3:-70461866 | None:intergenic |
| GCAGAGGAACTAGTTGAAGG+GGG | 0.710839 | 8.3:+70462377 | MS.gene07909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTAATGTTTTTTTTTTTT+TGG | - | chr8.3:70462188-70462207 | None:intergenic | 10.0% |
| !!! | TGATTTTATTTGTTAATTAT+GGG | + | chr8.3:70462221-70462240 | MS.gene07909:intron | 10.0% |
| !!! | TTGATTTTATTTGTTAATTA+TGG | + | chr8.3:70462220-70462239 | MS.gene07909:intron | 10.0% |
| !! | AAATGAAATCAAAACTAAAA+TGG | + | chr8.3:70461820-70461839 | MS.gene07909:CDS | 15.0% |
| !! | AATGAAATCAAAACTAAAAT+GGG | + | chr8.3:70461821-70461840 | MS.gene07909:CDS | 15.0% |
| !!! | GATTTTATTTGTTAATTATG+GGG | + | chr8.3:70462222-70462241 | MS.gene07909:intron | 15.0% |
| !! | ATTGAAAAATATCTTGTACT+CGG | - | chr8.3:70461735-70461754 | None:intergenic | 20.0% |
| !! | GAAACACAATATAAAATATG+AGG | - | chr8.3:70461966-70461985 | None:intergenic | 20.0% |
| !!! | ATATTTTTCAATGATGTTTC+AGG | + | chr8.3:70461743-70461762 | MS.gene07909:CDS | 20.0% |
| ! | GTTAATTATGGGGAATTATT+AGG | + | chr8.3:70462232-70462251 | MS.gene07909:intron | 25.0% |
| ! | TACCAATTGAACTACATTTA+CGG | - | chr8.3:70462067-70462086 | None:intergenic | 25.0% |
| ! | TATGCTTTAACAACATTTGA+GGG | - | chr8.3:70462311-70462330 | None:intergenic | 25.0% |
| ! | TCAATTTAAAAGAGACTTCT+CGG | + | chr8.3:70462337-70462356 | MS.gene07909:CDS | 25.0% |
| ! | TTGAAAAATATCTTGTACTC+GGG | - | chr8.3:70461734-70461753 | None:intergenic | 25.0% |
| ACCAATTGAACTACATTTAC+GGG | - | chr8.3:70462066-70462085 | None:intergenic | 30.0% | |
| AGATTCACACATATTATGTG+TGG | - | chr8.3:70462147-70462166 | None:intergenic | 30.0% | |
| ATGAAATGCAAACTTTGATC+AGG | - | chr8.3:70461896-70461915 | None:intergenic | 30.0% | |
| GTATGCTTTAACAACATTTG+AGG | - | chr8.3:70462312-70462331 | None:intergenic | 30.0% | |
| TTCCAGGGATAATTTATACA+GGG | + | chr8.3:70462089-70462108 | MS.gene07909:intron | 30.0% | |
| TTTGGTATCAGACATTATCA+TGG | + | chr8.3:70461670-70461689 | MS.gene07909:CDS | 30.0% | |
| ! | GATACCAAAAACAAAGTGTT+TGG | - | chr8.3:70461659-70461678 | None:intergenic | 30.0% |
| ! | TGTGTAGTTGATGTAAATGT+TGG | - | chr8.3:70462285-70462304 | None:intergenic | 30.0% |
| !! | AAGGTTTTTAGAAAGTGTGT+TGG | - | chr8.3:70461606-70461625 | None:intergenic | 30.0% |
| AACCTAAATCTGCAATTGCA+AGG | - | chr8.3:70461625-70461644 | None:intergenic | 35.0% | |
| AACCTTGCAATTGCAGATTT+AGG | + | chr8.3:70461620-70461639 | MS.gene07909:CDS | 35.0% | |
| ACATATTATGTGTGGAGAAG+TGG | - | chr8.3:70462139-70462158 | None:intergenic | 35.0% | |
| ACTCTGTTATAGAAAGAACC+AGG | - | chr8.3:70461869-70461888 | None:intergenic | 35.0% | |
| ATATTATGTGTGGAGAAGTG+GGG | - | chr8.3:70462137-70462156 | None:intergenic | 35.0% | |
| CATATTATGTGTGGAGAAGT+GGG | - | chr8.3:70462138-70462157 | None:intergenic | 35.0% | |
| CTTCCAGGGATAATTTATAC+AGG | + | chr8.3:70462088-70462107 | MS.gene07909:intron | 35.0% | |
| GAGATGAATGGTTCAATTGT+TGG | - | chr8.3:70461712-70461731 | None:intergenic | 35.0% | |
| GTTATGGCTTCATCTCTTAT+TGG | - | chr8.3:70461572-70461591 | None:intergenic | 35.0% | |
| TATGGGGAATTATTAGGTTC+CGG | + | chr8.3:70462238-70462257 | MS.gene07909:intron | 35.0% | |
| TATGTGTGAATCTAGTCACT+AGG | + | chr8.3:70462154-70462173 | MS.gene07909:intron | 35.0% | |
| TCCAGGGATAATTTATACAG+GGG | + | chr8.3:70462090-70462109 | MS.gene07909:intron | 35.0% | |
| TCCCGTAAATGTAGTTCAAT+TGG | + | chr8.3:70462062-70462081 | MS.gene07909:intron | 35.0% | |
| TTATTGTTCTCTATACCCTC+CGG | - | chr8.3:70462260-70462279 | None:intergenic | 35.0% | |
| ! | TAACCTTTGATAGCCAATGA+AGG | - | chr8.3:70461934-70461953 | None:intergenic | 35.0% |
| ! | TAGAAAGTGTGTTGGAGTAA+AGG | - | chr8.3:70461598-70461617 | None:intergenic | 35.0% |
| !!! | TGGACCAAACACTTTGTTTT+TGG | + | chr8.3:70461652-70461671 | MS.gene07909:CDS | 35.0% |
| ATTCCTCTTACAGCCTTCAT+TGG | + | chr8.3:70461918-70461937 | MS.gene07909:CDS | 40.0% | |
| GATAATTTATACAGGGGCCA+GGG | + | chr8.3:70462096-70462115 | MS.gene07909:intron | 40.0% | |
| ! | AGTTCAATTGGTAGCTTCCA+GGG | + | chr8.3:70462074-70462093 | MS.gene07909:intron | 40.0% |
| ! | ATGGGTCCTTGTTACTTCTT+TGG | + | chr8.3:70461839-70461858 | MS.gene07909:CDS | 40.0% |
| ! | TAGTTCAATTGGTAGCTTCC+AGG | + | chr8.3:70462073-70462092 | MS.gene07909:intron | 40.0% |
| ! | TGGGTCCTTGTTACTTCTTT+GGG | + | chr8.3:70461840-70461859 | MS.gene07909:CDS | 40.0% |
| !! | GCAGATTTAGGTTGTTCTTC+TGG | + | chr8.3:70461632-70461651 | MS.gene07909:CDS | 40.0% |
| !! | GTTGGAGTAAAGGCTTGTTA+TGG | - | chr8.3:70461588-70461607 | None:intergenic | 40.0% |
| !! | TTTTCTCAAGTATCGTGCAG+AGG | + | chr8.3:70462361-70462380 | MS.gene07909:CDS | 40.0% |
| GCCCCTGTATAAATTATCCC+TGG | - | chr8.3:70462094-70462113 | None:intergenic | 45.0% | |
| GGAACCCCAAAGAAGTAACA+AGG | - | chr8.3:70461848-70461867 | None:intergenic | 45.0% | |
| GGATAATTTATACAGGGGCC+AGG | + | chr8.3:70462095-70462114 | MS.gene07909:intron | 45.0% | |
| GGGAATTATTAGGTTCCGGA+GGG | + | chr8.3:70462242-70462261 | MS.gene07909:intron | 45.0% | |
| GTGCAGAGGAACTAGTTGAA+GGG | + | chr8.3:70462375-70462394 | MS.gene07909:CDS | 45.0% | |
| TAGCCAATGAAGGCTGTAAG+AGG | - | chr8.3:70461924-70461943 | None:intergenic | 45.0% | |
| TCTTGTACTCGGGAGATGAA+TGG | - | chr8.3:70461724-70461743 | None:intergenic | 45.0% | |
| TGCAGAGGAACTAGTTGAAG+GGG | + | chr8.3:70462376-70462395 | MS.gene07909:CDS | 45.0% | |
| ! | CAGCCTTCATTGGCTATCAA+AGG | + | chr8.3:70461928-70461947 | MS.gene07909:CDS | 45.0% |
| ! | GGGTCCTTGTTACTTCTTTG+GGG | + | chr8.3:70461841-70461860 | MS.gene07909:CDS | 45.0% |
| !! | TGTTACTTCTTTGGGGTTCC+TGG | + | chr8.3:70461848-70461867 | MS.gene07909:CDS | 45.0% |
| CAGAGGAACTAGTTGAAGGG+GGG | + | chr8.3:70462378-70462397 | MS.gene07909:CDS | 50.0% | |
| CGTGCAGAGGAACTAGTTGA+AGG | + | chr8.3:70462374-70462393 | MS.gene07909:CDS | 50.0% | |
| GCAGAGGAACTAGTTGAAGG+GGG | + | chr8.3:70462377-70462396 | MS.gene07909:CDS | 50.0% | |
| GGGGAATTATTAGGTTCCGG+AGG | + | chr8.3:70462241-70462260 | MS.gene07909:intron | 50.0% | |
| GTGTGGAGAAGTGGGGAATC+CGG | - | chr8.3:70462130-70462149 | None:intergenic | 55.0% | |
| TGTGGAGAAGTGGGGAATCC+GGG | - | chr8.3:70462129-70462148 | None:intergenic | 55.0% | |
| GTGGAGAAGTGGGGAATCCG+GGG | - | chr8.3:70462128-70462147 | None:intergenic | 60.0% | |
| GGAATCCGGGGTTCGAACCC+TGG | - | chr8.3:70462116-70462135 | None:intergenic | 65.0% | |
| AGGGGCCAGGGTTCGAACCC+CGG | + | chr8.3:70462108-70462127 | MS.gene07909:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 70461545 | 70462398 | 70461545 | ID=MS.gene07909 |
| chr8.3 | mRNA | 70461545 | 70462398 | 70461545 | ID=MS.gene07909.t1;Parent=MS.gene07909 |
| chr8.3 | exon | 70461545 | 70461949 | 70461545 | ID=MS.gene07909.t1.exon1;Parent=MS.gene07909.t1 |
| chr8.3 | CDS | 70461545 | 70461949 | 70461545 | ID=cds.MS.gene07909.t1;Parent=MS.gene07909.t1 |
| chr8.3 | exon | 70462254 | 70462398 | 70462254 | ID=MS.gene07909.t1.exon2;Parent=MS.gene07909.t1 |
| chr8.3 | CDS | 70462254 | 70462398 | 70462254 | ID=cds.MS.gene07909.t1;Parent=MS.gene07909.t1 |
| Gene Sequence |
| Protein sequence |
