Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07959.t1 | GAU48222.1 | 57.3 | 471 | 120 | 6 | 65 | 502 | 7 | 429 | 1.70E-132 | 483 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07959.t1 | A0A2Z6PEX1 | 57.3 | 471 | 120 | 6 | 65 | 502 | 7 | 429 | 1.2e-132 | 483.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057576 | MS.gene07959 | 0.804602 | 2.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07959.t1 | MTR_1325s0020 | 89.815 | 108 | 11 | 0 | 405 | 512 | 2 | 109 | 4.17e-64 | 204 |
| MS.gene07959.t1 | MTR_1325s0010 | 96.591 | 88 | 3 | 0 | 254 | 341 | 1 | 88 | 2.10e-58 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGGGATGCATCTTATT+TGG | 0.145304 | 6.3:-30794260 | MS.gene07959:CDS |
| AATGAAAGATGAGTTATTTA+AGG | 0.170608 | 6.3:-30793662 | MS.gene07959:CDS |
| ATCACAGTTGATGCCATTAT+TGG | 0.200449 | 6.3:-30792726 | MS.gene07959:CDS |
| TACTTCTGCCTTCATTCCTT+TGG | 0.225653 | 6.3:+30793394 | None:intergenic |
| AGAAGTTAACTCGGTGAATT+TGG | 0.240545 | 6.3:-30793438 | MS.gene07959:CDS |
| TAACAACATACATCATTTCT+TGG | 0.279472 | 6.3:+30794569 | None:intergenic |
| GCTTCATCTGCAGAGTTTAC+TGG | 0.300268 | 6.3:-30792824 | MS.gene07959:CDS |
| CAAAAGTCTGTCTCGTCTTA+TGG | 0.305607 | 6.3:+30792882 | None:intergenic |
| ACTTCTGCCTTCATTCCTTT+GGG | 0.317850 | 6.3:+30793395 | None:intergenic |
| ACTTTGGTGAACACAAAATA+AGG | 0.326758 | 6.3:-30793256 | MS.gene07959:CDS |
| AATATCACGGGTCACAGTTT+GGG | 0.329052 | 6.3:+30793747 | None:intergenic |
| AAGGAATGAAGGCAGAAGTA+TGG | 0.329512 | 6.3:-30793391 | MS.gene07959:CDS |
| TAATATCACGGGTCACAGTT+TGG | 0.333241 | 6.3:+30793746 | None:intergenic |
| TGAGTTATTTAAGGAATTTA+CGG | 0.348018 | 6.3:-30793653 | MS.gene07959:intron |
| GATATGATTGGCTCCAATAA+TGG | 0.354752 | 6.3:+30792713 | None:intergenic |
| TGAAGGGATGCATCTTATTT+GGG | 0.365880 | 6.3:-30794259 | MS.gene07959:CDS |
| AAAGGTACGGCAGGAAGTTT+AGG | 0.369105 | 6.3:-30794048 | MS.gene07959:CDS |
| AGTGTTCATTCAACTCTCTA+TGG | 0.375638 | 6.3:-30794354 | MS.gene07959:CDS |
| CGCCAACCACTATAGTTAGA+TGG | 0.379771 | 6.3:+30794378 | None:intergenic |
| AGACAAAATCATGGACTGCC+TGG | 0.392320 | 6.3:-30794318 | MS.gene07959:CDS |
| TGACCCGTGATATTATATCT+AGG | 0.394681 | 6.3:-30793738 | MS.gene07959:CDS |
| GCAGAGAGGCATGCAACATA+TGG | 0.411033 | 6.3:-30794613 | MS.gene07959:CDS |
| GCAGAGAGGCATGCAACATA+TGG | 0.411033 | 6.3:-30794805 | MS.gene07959:CDS |
| TCATGAGATCCTTCAGTTGA+AGG | 0.418974 | 6.3:+30793937 | None:intergenic |
| GGGATGGCTTGGTCGACATT+TGG | 0.420534 | 6.3:-30793370 | MS.gene07959:CDS |
| AAGATGAACAACGCTACTTT+GGG | 0.421905 | 6.3:-30794009 | MS.gene07959:CDS |
| TGATCAGATCACCATTCAAC+AGG | 0.425038 | 6.3:-30794461 | MS.gene07959:intron |
| CCTGTGTGCAACACTGCATC+AGG | 0.426150 | 6.3:+30793290 | None:intergenic |
| GAAGATGAACAACGCTACTT+TGG | 0.426393 | 6.3:-30794010 | MS.gene07959:CDS |
| TCCTTTGGGTGCATGACCCT+TGG | 0.428211 | 6.3:+30793409 | None:intergenic |
| AACTCATCTTTCATTTCACT+TGG | 0.429996 | 6.3:+30793670 | None:intergenic |
| GGCAGTTGATTCTAACTTGT+GGG | 0.441974 | 6.3:-30792921 | MS.gene07959:CDS |
| CAACTGAAGGATCTCATGAT+AGG | 0.443027 | 6.3:-30793933 | MS.gene07959:CDS |
| ACTGCCATGCTGGAAAAGTA+TGG | 0.445663 | 6.3:-30792965 | MS.gene07959:CDS |
| ACTGAAGTTGAGTTGTTAGT+TGG | 0.448820 | 6.3:+30793961 | None:intergenic |
| TAATCTTTCCACTTCTCAGC+TGG | 0.451939 | 6.3:+30793694 | None:intergenic |
| GACATATGACACTGCCATGC+TGG | 0.457913 | 6.3:-30792975 | MS.gene07959:CDS |
| CCCTAGCCAGTCCATGATCT+TGG | 0.459900 | 6.3:+30794761 | None:intergenic |
| GATACAAATGATTCAAGAAA+AGG | 0.462903 | 6.3:-30794213 | MS.gene07959:intron |
| GTGGGTCGCAGCTTAGACCT+TGG | 0.466543 | 6.3:-30792860 | MS.gene07959:CDS |
| GACAAAATCATGGACTGCCT+GGG | 0.472346 | 6.3:-30794317 | MS.gene07959:CDS |
| GTCGCAGCTTAGACCTTGGT+GGG | 0.478997 | 6.3:-30792856 | MS.gene07959:CDS |
| ATTAGAAATTGTCAAGGGAG+AGG | 0.482467 | 6.3:-30794429 | MS.gene07959:CDS |
| TTGCATTGGTGCTTTGTGCA+TGG | 0.488919 | 6.3:+30792679 | None:intergenic |
| TCTCAACCATCTAACTATAG+TGG | 0.489438 | 6.3:-30794384 | MS.gene07959:CDS |
| GGCAGAAGTATGGGATGGCT+TGG | 0.489800 | 6.3:-30793381 | MS.gene07959:CDS |
| CTTTGGATGATGCGAAGAAA+AGG | 0.491252 | 6.3:-30794934 | None:intergenic |
| TCAGACTTCTTCTTCCACTC+TGG | 0.493139 | 6.3:+30793341 | None:intergenic |
| ATATGGGATGAGGCAGGGGT+TGG | 0.496425 | 6.3:-30794788 | MS.gene07959:CDS |
| GATGAATATAATGCAAGAAA+AGG | 0.497952 | 6.3:-30794736 | MS.gene07959:intron |
| CAACATATGGGATGAGGCAG+GGG | 0.502945 | 6.3:-30794600 | MS.gene07959:CDS |
| CAACATATGGGATGAGGCAG+GGG | 0.502945 | 6.3:-30794792 | MS.gene07959:CDS |
| TTCTGATGTAGCTAAGATGT+TGG | 0.511128 | 6.3:+30792796 | None:intergenic |
| GTGAATTTGGTTGACACCAA+GGG | 0.512099 | 6.3:-30793425 | MS.gene07959:CDS |
| TCACCATTCAACAGGAAAAG+AGG | 0.514218 | 6.3:-30794453 | MS.gene07959:CDS |
| GGTCGCAGCTTAGACCTTGG+TGG | 0.517562 | 6.3:-30792857 | MS.gene07959:CDS |
| TATAATGATAGTGAAGATGA+AGG | 0.519013 | 6.3:-30794276 | MS.gene07959:CDS |
| CACCGAGTTAACTTCTCGTA+AGG | 0.521322 | 6.3:+30793445 | None:intergenic |
| GGGTTGGATGACCAAGATCA+TGG | 0.525821 | 6.3:-30794772 | MS.gene07959:CDS |
| GAAGTTGAGTTGTTAGTTGG+TGG | 0.526674 | 6.3:+30793964 | None:intergenic |
| TTAGATGGTTGAGAAGGCTT+CGG | 0.526734 | 6.3:+30794393 | None:intergenic |
| CATGCATGTTCTTTCCCACA+CGG | 0.531477 | 6.3:+30793508 | None:intergenic |
| CAGAGAGGCATGCAACATAT+GGG | 0.531859 | 6.3:-30794612 | MS.gene07959:CDS |
| CAGAGAGGCATGCAACATAT+GGG | 0.531859 | 6.3:-30794804 | MS.gene07959:CDS |
| GTGTTCATTCAACTCTCTAT+GGG | 0.533675 | 6.3:-30794353 | MS.gene07959:CDS |
| CTGAAGGTCACATGGATGCT+AGG | 0.535747 | 6.3:-30792646 | MS.gene07959:CDS |
| CGGCAGTTGATTCTAACTTG+TGG | 0.536084 | 6.3:-30792922 | MS.gene07959:CDS |
| TCAGCGAATTCACCTTGCAT+TGG | 0.536256 | 6.3:+30792665 | None:intergenic |
| TGCAACATATGGGATGAGGC+AGG | 0.538030 | 6.3:-30794602 | MS.gene07959:CDS |
| TGCAACATATGGGATGAGGC+AGG | 0.538030 | 6.3:-30794794 | MS.gene07959:CDS |
| GTTGATAAAAGACAAAATCA+TGG | 0.538431 | 6.3:-30794327 | MS.gene07959:CDS |
| TGCCTACTCCAGCTGAGAAG+TGG | 0.541113 | 6.3:-30793702 | MS.gene07959:CDS |
| ACAGGAGGCTCTATAAACTT+TGG | 0.546299 | 6.3:-30793272 | MS.gene07959:CDS |
| AGGAATGAAGGCAGAAGTAT+GGG | 0.547959 | 6.3:-30793390 | MS.gene07959:CDS |
| GACCCGTGATATTATATCTA+GGG | 0.548986 | 6.3:-30793737 | MS.gene07959:CDS |
| AGAGGAATTAGAAATTGTCA+AGG | 0.549374 | 6.3:-30794435 | MS.gene07959:CDS |
| TCATGCACCCAAAGGAATGA+AGG | 0.549651 | 6.3:-30793402 | MS.gene07959:CDS |
| CTACTTTGGGTTCATTCCCA+CGG | 0.550189 | 6.3:-30793996 | MS.gene07959:CDS |
| AATGCAACAAAAGGTACGGC+AGG | 0.551052 | 6.3:-30794057 | MS.gene07959:CDS |
| CACCCTAGATATAATATCAC+GGG | 0.552020 | 6.3:+30793735 | None:intergenic |
| GTGCAACACTGCATCAGGTA+AGG | 0.558789 | 6.3:+30793295 | None:intergenic |
| GATTGAATCAGTGATATGAT+TGG | 0.560626 | 6.3:+30792701 | None:intergenic |
| TTCATTCAACTCTCTATGGG+AGG | 0.562260 | 6.3:-30794350 | MS.gene07959:CDS |
| CCAAGATCATGGACTGGCTA+GGG | 0.563308 | 6.3:-30794761 | MS.gene07959:CDS |
| ACCAAGATCATGGACTGGCT+AGG | 0.567510 | 6.3:-30794762 | MS.gene07959:CDS |
| GATGGTTGAGAAGGCTTCGG+TGG | 0.567603 | 6.3:+30794396 | None:intergenic |
| CTATAGTTAGATGGTTGAGA+AGG | 0.571661 | 6.3:+30794387 | None:intergenic |
| GATGTAGCTAAGATGTTGGA+AGG | 0.573672 | 6.3:+30792800 | None:intergenic |
| TCATTCAACTCTCTATGGGA+GGG | 0.574330 | 6.3:-30794349 | MS.gene07959:CDS |
| GCAACATATGGGATGAGGCA+GGG | 0.578384 | 6.3:-30794601 | MS.gene07959:CDS |
| GCAACATATGGGATGAGGCA+GGG | 0.578384 | 6.3:-30794793 | MS.gene07959:CDS |
| GGCATGCAACATATGGGATG+AGG | 0.578560 | 6.3:-30794606 | MS.gene07959:CDS |
| GGCATGCAACATATGGGATG+AGG | 0.578560 | 6.3:-30794798 | MS.gene07959:CDS |
| GAGGAATTAGAAATTGTCAA+GGG | 0.578776 | 6.3:-30794434 | MS.gene07959:CDS |
| AACCATCTAACTATAGTGGT+TGG | 0.581730 | 6.3:-30794380 | MS.gene07959:CDS |
| TTCCACTTCTCAGCTGGAGT+AGG | 0.583500 | 6.3:+30793700 | None:intergenic |
| ATATCACGGGTCACAGTTTG+GGG | 0.587701 | 6.3:+30793748 | None:intergenic |
| AGAATCAACTGCCGGATGAG+TGG | 0.589995 | 6.3:+30792931 | None:intergenic |
| GAGAAAAGTTATATCTGTTG+AGG | 0.597798 | 6.3:-30793911 | MS.gene07959:CDS |
| GCATAACATTCATCAGCCCC+AGG | 0.599662 | 6.3:+30794300 | None:intergenic |
| CACAAGTTAGAATCAACTGC+CGG | 0.599971 | 6.3:+30792923 | None:intergenic |
| TGAATTCGCTGAAGGTCACA+TGG | 0.601074 | 6.3:-30792654 | MS.gene07959:CDS |
| GGTGAATTTGGTTGACACCA+AGG | 0.603373 | 6.3:-30793426 | MS.gene07959:CDS |
| ATAATGATAGTGAAGATGAA+GGG | 0.606353 | 6.3:-30794275 | MS.gene07959:CDS |
| TAATATGTCAAGAACCGTGT+GGG | 0.607360 | 6.3:-30793522 | MS.gene07959:CDS |
| CGTGTGGGAAAGAACATGCA+TGG | 0.611634 | 6.3:-30793507 | MS.gene07959:CDS |
| ACTTCAGTACCTTCAACTGA+AGG | 0.614576 | 6.3:-30793946 | MS.gene07959:CDS |
| ATGCACAAAGCACCAATGCA+AGG | 0.624945 | 6.3:-30792677 | MS.gene07959:CDS |
| TGGTGAACACAAAATAAGGA+TGG | 0.626778 | 6.3:-30793252 | MS.gene07959:intron |
| ATGCAAGGTGAATTCGCTGA+AGG | 0.627682 | 6.3:-30792662 | MS.gene07959:CDS |
| GGATGACCAAGATCATGGAC+TGG | 0.628479 | 6.3:-30794767 | MS.gene07959:CDS |
| ACAAAATCATGGACTGCCTG+GGG | 0.638168 | 6.3:-30794316 | MS.gene07959:CDS |
| ACCAAGGGTCATGCACCCAA+AGG | 0.640771 | 6.3:-30793410 | MS.gene07959:CDS |
| TTGGTGGATCAGTAGACCGT+GGG | 0.641476 | 6.3:+30793980 | None:intergenic |
| TCACCCTAGATATAATATCA+CGG | 0.642680 | 6.3:+30793734 | None:intergenic |
| GGCCTTACGAGAAGTTAACT+CGG | 0.652110 | 6.3:-30793447 | MS.gene07959:CDS |
| ATGAAGGCAGAAGTATGGGA+TGG | 0.655095 | 6.3:-30793386 | MS.gene07959:CDS |
| GATGCAGTGTTGCACACAGG+AGG | 0.664451 | 6.3:-30793287 | MS.gene07959:CDS |
| CCTGATGCAGTGTTGCACAC+AGG | 0.666838 | 6.3:-30793290 | MS.gene07959:CDS |
| GTTGGTGGATCAGTAGACCG+TGG | 0.668860 | 6.3:+30793979 | None:intergenic |
| TATATACAGCTTCAGCAGAG+AGG | 0.676750 | 6.3:-30794627 | MS.gene07959:intron |
| TATATACAGCTTCAGCAGAG+AGG | 0.676750 | 6.3:-30794819 | MS.gene07959:intron |
| AAGCTGACACAAACCCACCA+AGG | 0.689462 | 6.3:+30792843 | None:intergenic |
| ACATTTGGTTGAAACCAGAG+TGG | 0.690890 | 6.3:-30793355 | MS.gene07959:CDS |
| GTAATATGTCAAGAACCGTG+TGG | 0.718467 | 6.3:-30793523 | MS.gene07959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATAGTTGTATTATAA+TGG | - | chr6.3:30793986-30794005 | MS.gene07959:CDS | 10.0% |
| !! | CAAAATAATTGTGTTATATA+TGG | - | chr6.3:30792687-30792706 | MS.gene07959:CDS | 15.0% |
| !! | GTTTATCAACAATAAAAATT+GGG | + | chr6.3:30793409-30793428 | None:intergenic | 15.0% |
| !! | TATTCTAATAAATGTGTTAT+AGG | - | chr6.3:30794383-30794402 | MS.gene07959:CDS | 15.0% |
| !! | TCCTAAAAATAAATTATACA+AGG | + | chr6.3:30793961-30793980 | None:intergenic | 15.0% |
| !! | TGTTTATCAACAATAAAAAT+TGG | + | chr6.3:30793410-30793429 | None:intergenic | 15.0% |
| !! | TTTAAAAAATGCAAGAAAAA+TGG | - | chr6.3:30794100-30794119 | MS.gene07959:intron | 15.0% |
| !! | AAATATCAAGTGTTAATATC+AGG | + | chr6.3:30793763-30793782 | None:intergenic | 20.0% |
| !! | AATGAAAGATGAGTTATTTA+AGG | - | chr6.3:30793906-30793925 | MS.gene07959:CDS | 20.0% |
| !! | ACTGAAGTTATTATATCTAA+AGG | - | chr6.3:30792664-30792683 | MS.gene07959:CDS | 20.0% |
| !! | TGAGTTATTTAAGGAATTTA+CGG | - | chr6.3:30793915-30793934 | MS.gene07959:CDS | 20.0% |
| !! | TTATTGTGTAATATGAACAT+AGG | - | chr6.3:30794532-30794551 | MS.gene07959:intron | 20.0% |
| !!! | ATATCTGAAATATGTTTTTC+AGG | - | chr6.3:30794569-30794588 | MS.gene07959:intron | 20.0% |
| !!! | ATTGATTCTAATTAATGATG+TGG | - | chr6.3:30793071-30793090 | MS.gene07959:intron | 20.0% |
| !!! | GCCTTGTATAATTTATTTTT+AGG | - | chr6.3:30793957-30793976 | MS.gene07959:CDS | 20.0% |
| !!! | TGTGAATTTTAAGTGATTTA+TGG | - | chr6.3:30793722-30793741 | MS.gene07959:CDS | 20.0% |
| !!! | TTTTCTTGCATTATATTCAT+CGG | + | chr6.3:30792833-30792852 | None:intergenic | 20.0% |
| ! | AAAAAATGCAACAAAAGGTA+CGG | - | chr6.3:30793507-30793526 | MS.gene07959:CDS | 25.0% |
| ! | AAGAAAACAATTATATCGCA+TGG | + | chr6.3:30793463-30793482 | None:intergenic | 25.0% |
| ! | AATAAATGTGTTATAGGAGA+AGG | - | chr6.3:30794389-30794408 | MS.gene07959:CDS | 25.0% |
| ! | CGAATGATATAATTTCTACA+CGG | - | chr6.3:30793432-30793451 | MS.gene07959:CDS | 25.0% |
| ! | GATACAAAAAATGCAACAAA+AGG | - | chr6.3:30793502-30793521 | MS.gene07959:CDS | 25.0% |
| ! | GATACAAATGATTCAAGAAA+AGG | - | chr6.3:30793355-30793374 | MS.gene07959:CDS | 25.0% |
| ! | GATGAATATAATGCAAGAAA+AGG | - | chr6.3:30792832-30792851 | MS.gene07959:CDS | 25.0% |
| ! | TAACAACATACATCATTTCT+TGG | + | chr6.3:30793002-30793021 | None:intergenic | 25.0% |
| !! | ATAATGATAGTGAAGATGAA+GGG | - | chr6.3:30793293-30793312 | MS.gene07959:CDS | 25.0% |
| !! | CGTTTTTATATACACATACA+TGG | - | chr6.3:30794350-30794369 | MS.gene07959:CDS | 25.0% |
| !! | GTTGATAAAAGACAAAATCA+TGG | - | chr6.3:30793241-30793260 | MS.gene07959:intron | 25.0% |
| !! | TATAATGATAGTGAAGATGA+AGG | - | chr6.3:30793292-30793311 | MS.gene07959:CDS | 25.0% |
| !! | TTTTTAAATGATCAGGATAG+CGG | + | chr6.3:30794088-30794107 | None:intergenic | 25.0% |
| !!! | CATCTTTTTTCTTATGAACA+CGG | + | chr6.3:30794452-30794471 | None:intergenic | 25.0% |
| !!! | CTTGCATTTTTTAAATGATC+AGG | + | chr6.3:30794095-30794114 | None:intergenic | 25.0% |
| AACTCATCTTTCATTTCACT+TGG | + | chr6.3:30793901-30793920 | None:intergenic | 30.0% | |
| ACTTTGGTGAACACAAAATA+AGG | - | chr6.3:30794312-30794331 | MS.gene07959:CDS | 30.0% | |
| AGAGGAATTAGAAATTGTCA+AGG | - | chr6.3:30793133-30793152 | MS.gene07959:CDS | 30.0% | |
| AGTTGTATTATAATGGTGCA+GGG | - | chr6.3:30793993-30794012 | MS.gene07959:CDS | 30.0% | |
| CGTGTTCATAAGAAAAAAGA+TGG | - | chr6.3:30794450-30794469 | MS.gene07959:CDS | 30.0% | |
| CTAATTAATGATGTGGATGA+TGG | - | chr6.3:30793078-30793097 | MS.gene07959:intron | 30.0% | |
| GAGAAAAGTTATATCTGTTG+AGG | - | chr6.3:30793657-30793676 | MS.gene07959:CDS | 30.0% | |
| GAGGAATTAGAAATTGTCAA+GGG | - | chr6.3:30793134-30793153 | MS.gene07959:CDS | 30.0% | |
| GATTGAATCAGTGATATGAT+TGG | + | chr6.3:30794870-30794889 | None:intergenic | 30.0% | |
| TAGTTGTATTATAATGGTGC+AGG | - | chr6.3:30793992-30794011 | MS.gene07959:CDS | 30.0% | |
| TCACCCTAGATATAATATCA+CGG | + | chr6.3:30793837-30793856 | None:intergenic | 30.0% | |
| !!! | GTTTTCTTTTCTGAAATGCA+AGG | - | chr6.3:30793475-30793494 | MS.gene07959:CDS | 30.0% |
| AACCATCTAACTATAGTGGT+TGG | - | chr6.3:30793188-30793207 | MS.gene07959:intron | 35.0% | |
| AGTGTTCATTCAACTCTCTA+TGG | - | chr6.3:30793214-30793233 | MS.gene07959:intron | 35.0% | |
| ATGAAGGGATGCATCTTATT+TGG | - | chr6.3:30793308-30793327 | MS.gene07959:CDS | 35.0% | |
| ATTAGAAATTGTCAAGGGAG+AGG | - | chr6.3:30793139-30793158 | MS.gene07959:CDS | 35.0% | |
| CACCCTAGATATAATATCAC+GGG | + | chr6.3:30793836-30793855 | None:intergenic | 35.0% | |
| CTATAGTTAGATGGTTGAGA+AGG | + | chr6.3:30793184-30793203 | None:intergenic | 35.0% | |
| GACCCGTGATATTATATCTA+GGG | - | chr6.3:30793831-30793850 | MS.gene07959:intron | 35.0% | |
| GTGTTCATTCAACTCTCTAT+GGG | - | chr6.3:30793215-30793234 | MS.gene07959:intron | 35.0% | |
| TAATATGTCAAGAACCGTGT+GGG | - | chr6.3:30794046-30794065 | MS.gene07959:CDS | 35.0% | |
| TAGAACTCATGAGCATCTTA+CGG | + | chr6.3:30793694-30793713 | None:intergenic | 35.0% | |
| TCTCAACCATCTAACTATAG+TGG | - | chr6.3:30793184-30793203 | MS.gene07959:intron | 35.0% | |
| TGACCCGTGATATTATATCT+AGG | - | chr6.3:30793830-30793849 | MS.gene07959:intron | 35.0% | |
| TGGTGAACACAAAATAAGGA+TGG | - | chr6.3:30794316-30794335 | MS.gene07959:CDS | 35.0% | |
| TTCTGATGTAGCTAAGATGT+TGG | + | chr6.3:30794775-30794794 | None:intergenic | 35.0% | |
| ! | AAGATGAACAACGCTACTTT+GGG | - | chr6.3:30793559-30793578 | MS.gene07959:intron | 35.0% |
| ! | ACTGAAGTTGAGTTGTTAGT+TGG | + | chr6.3:30793610-30793629 | None:intergenic | 35.0% |
| ! | AGAAGTTAACTCGGTGAATT+TGG | - | chr6.3:30794130-30794149 | MS.gene07959:intron | 35.0% |
| ! | AGATGATTTTTCCACTCATC+CGG | - | chr6.3:30794626-30794645 | MS.gene07959:intron | 35.0% |
| ! | ATCACAGTTGATGCCATTAT+TGG | - | chr6.3:30794842-30794861 | MS.gene07959:intron | 35.0% |
| ! | ATTCCTCTTTTCCTGTTGAA+TGG | + | chr6.3:30793121-30793140 | None:intergenic | 35.0% |
| ! | GATATGATTGGCTCCAATAA+TGG | + | chr6.3:30794858-30794877 | None:intergenic | 35.0% |
| ! | TGAAGGGATGCATCTTATTT+GGG | - | chr6.3:30793309-30793328 | MS.gene07959:CDS | 35.0% |
| AAGGAATGAAGGCAGAAGTA+TGG | - | chr6.3:30794177-30794196 | MS.gene07959:intron | 40.0% | |
| AATATCACGGGTCACAGTTT+GGG | + | chr6.3:30793824-30793843 | None:intergenic | 40.0% | |
| ACAGGAGGCTCTATAAACTT+TGG | - | chr6.3:30794296-30794315 | MS.gene07959:CDS | 40.0% | |
| ACATTTGGTTGAAACCAGAG+TGG | - | chr6.3:30794213-30794232 | MS.gene07959:intron | 40.0% | |
| ACTTCAGTACCTTCAACTGA+AGG | - | chr6.3:30793622-30793641 | MS.gene07959:intron | 40.0% | |
| ACTTCTGCCTTCATTCCTTT+GGG | + | chr6.3:30794176-30794195 | None:intergenic | 40.0% | |
| AGAACTCATGAGCATCTTAC+GGG | + | chr6.3:30793693-30793712 | None:intergenic | 40.0% | |
| CAAAAGTCTGTCTCGTCTTA+TGG | + | chr6.3:30794689-30794708 | None:intergenic | 40.0% | |
| CAACTGAAGGATCTCATGAT+AGG | - | chr6.3:30793635-30793654 | MS.gene07959:intron | 40.0% | |
| CACAAGTTAGAATCAACTGC+CGG | + | chr6.3:30794648-30794667 | None:intergenic | 40.0% | |
| GAAGATGAACAACGCTACTT+TGG | - | chr6.3:30793558-30793577 | MS.gene07959:intron | 40.0% | |
| GATGTAGCTAAGATGTTGGA+AGG | + | chr6.3:30794771-30794790 | None:intergenic | 40.0% | |
| GTAATATGTCAAGAACCGTG+TGG | - | chr6.3:30794045-30794064 | MS.gene07959:CDS | 40.0% | |
| GTGAATTTGGTTGACACCAA+GGG | - | chr6.3:30794143-30794162 | MS.gene07959:intron | 40.0% | |
| TAATATCACGGGTCACAGTT+TGG | + | chr6.3:30793825-30793844 | None:intergenic | 40.0% | |
| TAATCTTTCCACTTCTCAGC+TGG | + | chr6.3:30793877-30793896 | None:intergenic | 40.0% | |
| TACTTCTGCCTTCATTCCTT+TGG | + | chr6.3:30794177-30794196 | None:intergenic | 40.0% | |
| TATATACAGCTTCAGCAGAG+AGG | - | chr6.3:30792749-30792768 | MS.gene07959:CDS | 40.0% | |
| TCACCATTCAACAGGAAAAG+AGG | - | chr6.3:30793115-30793134 | MS.gene07959:CDS | 40.0% | |
| TCATGAGATCCTTCAGTTGA+AGG | + | chr6.3:30793634-30793653 | None:intergenic | 40.0% | |
| TCATTCAACTCTCTATGGGA+GGG | - | chr6.3:30793219-30793238 | MS.gene07959:intron | 40.0% | |
| TGATCAGATCACCATTCAAC+AGG | - | chr6.3:30793107-30793126 | MS.gene07959:CDS | 40.0% | |
| TTAGATGGTTGAGAAGGCTT+CGG | + | chr6.3:30793178-30793197 | None:intergenic | 40.0% | |
| TTCATTCAACTCTCTATGGG+AGG | - | chr6.3:30793218-30793237 | MS.gene07959:intron | 40.0% | |
| ! | AAGACGAGACAGACTTTTGT+GGG | - | chr6.3:30794690-30794709 | MS.gene07959:intron | 40.0% |
| ! | AGGAATGAAGGCAGAAGTAT+GGG | - | chr6.3:30794178-30794197 | MS.gene07959:intron | 40.0% |
| ! | ATCTCCATACTTTTCCAGCA+TGG | + | chr6.3:30794610-30794629 | None:intergenic | 40.0% |
| ! | GAAGTTGAGTTGTTAGTTGG+TGG | + | chr6.3:30793607-30793626 | None:intergenic | 40.0% |
| ! | GGCAGTTGATTCTAACTTGT+GGG | - | chr6.3:30794647-30794666 | MS.gene07959:intron | 40.0% |
| ! | TAAGACGAGACAGACTTTTG+TGG | - | chr6.3:30794689-30794708 | MS.gene07959:intron | 40.0% |
| ACTGCCATGCTGGAAAAGTA+TGG | - | chr6.3:30794603-30794622 | MS.gene07959:CDS | 45.0% | |
| ATATCACGGGTCACAGTTTG+GGG | + | chr6.3:30793823-30793842 | None:intergenic | 45.0% | |
| ATGCAAGGTGAATTCGCTGA+AGG | - | chr6.3:30794906-30794925 | MS.gene07959:intron | 45.0% | |
| CACCGAGTTAACTTCTCGTA+AGG | + | chr6.3:30794126-30794145 | None:intergenic | 45.0% | |
| CATGCATGTTCTTTCCCACA+CGG | + | chr6.3:30794063-30794082 | None:intergenic | 45.0% | |
| CGCCAACCACTATAGTTAGA+TGG | + | chr6.3:30793193-30793212 | None:intergenic | 45.0% | |
| GCTTCATCTGCAGAGTTTAC+TGG | - | chr6.3:30794744-30794763 | MS.gene07959:CDS | 45.0% | |
| GGCCTTACGAGAAGTTAACT+CGG | - | chr6.3:30794121-30794140 | MS.gene07959:intron | 45.0% | |
| GGTGAATTTGGTTGACACCA+AGG | - | chr6.3:30794142-30794161 | MS.gene07959:intron | 45.0% | |
| TCAGACTTCTTCTTCCACTC+TGG | + | chr6.3:30794230-30794249 | None:intergenic | 45.0% | |
| TCAGCGAATTCACCTTGCAT+TGG | + | chr6.3:30794906-30794925 | None:intergenic | 45.0% | |
| TCATGCACCCAAAGGAATGA+AGG | - | chr6.3:30794166-30794185 | MS.gene07959:intron | 45.0% | |
| TGAATTCGCTGAAGGTCACA+TGG | - | chr6.3:30794914-30794933 | MS.gene07959:intron | 45.0% | |
| ! | AAAGGTACGGCAGGAAGTTT+AGG | - | chr6.3:30793520-30793539 | MS.gene07959:CDS | 45.0% |
| ! | AATGCAACAAAAGGTACGGC+AGG | - | chr6.3:30793511-30793530 | MS.gene07959:CDS | 45.0% |
| ! | ACAAAATCATGGACTGCCTG+GGG | - | chr6.3:30793252-30793271 | MS.gene07959:intron | 45.0% |
| ! | AGACAAAATCATGGACTGCC+TGG | - | chr6.3:30793250-30793269 | MS.gene07959:intron | 45.0% |
| ! | ATGAAGGCAGAAGTATGGGA+TGG | - | chr6.3:30794182-30794201 | MS.gene07959:intron | 45.0% |
| ! | ATGCACAAAGCACCAATGCA+AGG | - | chr6.3:30794891-30794910 | MS.gene07959:intron | 45.0% |
| ! | CAAACTTGTTTCCCACTTGC+AGG | - | chr6.3:30793785-30793804 | MS.gene07959:intron | 45.0% |
| ! | CAGAGAGGCATGCAACATAT+GGG | - | chr6.3:30792764-30792783 | MS.gene07959:CDS | 45.0% |
| ! | CGGCAGTTGATTCTAACTTG+TGG | - | chr6.3:30794646-30794665 | MS.gene07959:intron | 45.0% |
| ! | CTACTTTGGGTTCATTCCCA+CGG | - | chr6.3:30793572-30793591 | MS.gene07959:intron | 45.0% |
| ! | GACAAAATCATGGACTGCCT+GGG | - | chr6.3:30793251-30793270 | MS.gene07959:intron | 45.0% |
| ! | TTGCATTGGTGCTTTGTGCA+TGG | + | chr6.3:30794892-30794911 | None:intergenic | 45.0% |
| AACAAACCTCCTCCTGCAAG+TGG | + | chr6.3:30793800-30793819 | None:intergenic | 50.0% | |
| AAGCTGACACAAACCCACCA+AGG | + | chr6.3:30794728-30794747 | None:intergenic | 50.0% | |
| ACAAACCTCCTCCTGCAAGT+GGG | + | chr6.3:30793799-30793818 | None:intergenic | 50.0% | |
| ACTTGTTTCCCACTTGCAGG+AGG | - | chr6.3:30793788-30793807 | MS.gene07959:intron | 50.0% | |
| AGAATCAACTGCCGGATGAG+TGG | + | chr6.3:30794640-30794659 | None:intergenic | 50.0% | |
| CAACATATGGGATGAGGCAG+GGG | - | chr6.3:30792776-30792795 | MS.gene07959:CDS | 50.0% | |
| CGTGTGGGAAAGAACATGCA+TGG | - | chr6.3:30794061-30794080 | MS.gene07959:CDS | 50.0% | |
| CTGAAGGTCACATGGATGCT+AGG | - | chr6.3:30794922-30794941 | MS.gene07959:intron | 50.0% | |
| GACATATGACACTGCCATGC+TGG | - | chr6.3:30794593-30794612 | MS.gene07959:CDS | 50.0% | |
| GCAACATATGGGATGAGGCA+GGG | - | chr6.3:30792775-30792794 | MS.gene07959:CDS | 50.0% | |
| GCATAACATTCATCAGCCCC+AGG | + | chr6.3:30793271-30793290 | None:intergenic | 50.0% | |
| GGATGACCAAGATCATGGAC+TGG | - | chr6.3:30792801-30792820 | MS.gene07959:CDS | 50.0% | |
| GGCATGCAACATATGGGATG+AGG | - | chr6.3:30792770-30792789 | MS.gene07959:CDS | 50.0% | |
| GGGTTGGATGACCAAGATCA+TGG | - | chr6.3:30792796-30792815 | MS.gene07959:CDS | 50.0% | |
| GTGCAACACTGCATCAGGTA+AGG | + | chr6.3:30794276-30794295 | None:intergenic | 50.0% | |
| TGCAACATATGGGATGAGGC+AGG | - | chr6.3:30792774-30792793 | MS.gene07959:CDS | 50.0% | |
| TTCCACTTCTCAGCTGGAGT+AGG | + | chr6.3:30793871-30793890 | None:intergenic | 50.0% | |
| ! | GCAGAGAGGCATGCAACATA+TGG | - | chr6.3:30792763-30792782 | MS.gene07959:CDS | 50.0% |
| ! | TTGGTGGATCAGTAGACCGT+GGG | + | chr6.3:30793591-30793610 | None:intergenic | 50.0% |
| !! | ACCAAGATCATGGACTGGCT+AGG | - | chr6.3:30792806-30792825 | MS.gene07959:CDS | 50.0% |
| !! | CCAAGATCATGGACTGGCTA+GGG | - | chr6.3:30792807-30792826 | MS.gene07959:CDS | 50.0% |
| ACCAAGGGTCATGCACCCAA+AGG | - | chr6.3:30794158-30794177 | MS.gene07959:intron | 55.0% | |
| ATATGGGATGAGGCAGGGGT+TGG | - | chr6.3:30792780-30792799 | MS.gene07959:CDS | 55.0% | |
| CCCTAGCCAGTCCATGATCT+TGG | + | chr6.3:30792810-30792829 | None:intergenic | 55.0% | |
| CCTGATGCAGTGTTGCACAC+AGG | - | chr6.3:30794278-30794297 | MS.gene07959:CDS | 55.0% | |
| CCTGTGTGCAACACTGCATC+AGG | + | chr6.3:30794281-30794300 | None:intergenic | 55.0% | |
| GATGCAGTGTTGCACACAGG+AGG | - | chr6.3:30794281-30794300 | MS.gene07959:CDS | 55.0% | |
| GATGGTTGAGAAGGCTTCGG+TGG | + | chr6.3:30793175-30793194 | None:intergenic | 55.0% | |
| GTCGCAGCTTAGACCTTGGT+GGG | - | chr6.3:30794712-30794731 | MS.gene07959:intron | 55.0% | |
| TCCTTTGGGTGCATGACCCT+TGG | + | chr6.3:30794162-30794181 | None:intergenic | 55.0% | |
| TGCCTACTCCAGCTGAGAAG+TGG | - | chr6.3:30793866-30793885 | MS.gene07959:intron | 55.0% | |
| TGTTTCCCACTTGCAGGAGG+AGG | - | chr6.3:30793791-30793810 | MS.gene07959:intron | 55.0% | |
| ! | GGCAGAAGTATGGGATGGCT+TGG | - | chr6.3:30794187-30794206 | MS.gene07959:intron | 55.0% |
| ! | GTTGGTGGATCAGTAGACCG+TGG | + | chr6.3:30793592-30793611 | None:intergenic | 55.0% |
| !! | GGGATGGCTTGGTCGACATT+TGG | - | chr6.3:30794198-30794217 | MS.gene07959:intron | 55.0% |
| GGTCGCAGCTTAGACCTTGG+TGG | - | chr6.3:30794711-30794730 | MS.gene07959:intron | 60.0% | |
| GTGGGTCGCAGCTTAGACCT+TGG | - | chr6.3:30794708-30794727 | MS.gene07959:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 30792643 | 30794947 | 30792643 | ID=MS.gene07959 |
| chr6.3 | mRNA | 30792643 | 30794947 | 30792643 | ID=MS.gene07959.t1;Parent=MS.gene07959 |
| chr6.3 | exon | 30794935 | 30794947 | 30794935 | ID=MS.gene07959.t1.exon1;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30794935 | 30794947 | 30794935 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30794737 | 30794832 | 30794737 | ID=MS.gene07959.t1.exon2;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30794737 | 30794832 | 30794737 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30794580 | 30794640 | 30794580 | ID=MS.gene07959.t1.exon3;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30794580 | 30794640 | 30794580 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30794214 | 30794476 | 30794214 | ID=MS.gene07959.t1.exon4;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30794214 | 30794476 | 30794214 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30793898 | 30794093 | 30793898 | ID=MS.gene07959.t1.exon5;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30793898 | 30794093 | 30793898 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30793654 | 30793783 | 30793654 | ID=MS.gene07959.t1.exon6;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30793654 | 30793783 | 30793654 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30793253 | 30793576 | 30793253 | ID=MS.gene07959.t1.exon7;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30793253 | 30793576 | 30793253 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30793084 | 30793185 | 30793084 | ID=MS.gene07959.t1.exon8;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30793084 | 30793185 | 30793084 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| chr6.3 | exon | 30792643 | 30792999 | 30792643 | ID=MS.gene07959.t1.exon9;Parent=MS.gene07959.t1 |
| chr6.3 | CDS | 30792643 | 30792999 | 30792643 | ID=cds.MS.gene07959.t1;Parent=MS.gene07959.t1 |
| Gene Sequence |
| Protein sequence |
