AlfalfaGEDB | MS.gene07993

M. sativa cultivar XinJiangDaYe / MS.gene07993

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00560.36 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07993.t1	RHN51146.1	85	527	79	0	10	536	592	1118	1.00E-135	493.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07993.t1	Q6JN46	49.2	528	257	8	10	533	489	1009	7.0e-37	156.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07993.t1	A0A072U8L9	85.0	527	79	0	10	536	592	1118	7.2e-136	493.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052637	MS.gene07993	0.801388	9.22E-49	-1.69E-46
MS.gene053147	MS.gene07993	0.836421	9.45E-57	-1.69E-46
MS.gene054093	MS.gene07993	0.802634	5.11E-49	-1.69E-46
MS.gene054468	MS.gene07993	0.800094	1.69E-48	-1.69E-46
MS.gene054581	MS.gene07993	0.82487	6.39E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07993.t1	MTR_6g038940	83.871	527	85	0	10	536	592	1118	0.0	868
MS.gene07993.t1	MTR_6g038940	28.883	412	217	10	130	478	124	522	9.17e-23	103
MS.gene07993.t1	MTR_6g038940	27.273	484	288	15	11	435	344	822	6.46e-21	97.4
MS.gene07993.t1	MTR_6g038940	25.431	464	210	13	32	435	146	533	7.15e-19	91.3
MS.gene07993.t1	MTR_6g038940	30.046	436	246	18	48	447	113	525	1.80e-18	89.7
MS.gene07993.t1	MTR_6g038940	26.027	438	236	14	48	435	304	703	1.85e-13	73.9
MS.gene07993.t1	MTR_6g039180	81.025	527	100	0	10	536	658	1184	0.0	865
MS.gene07993.t1	MTR_6g039180	28.281	442	242	16	43	444	128	534	2.17e-18	89.7
MS.gene07993.t1	MTR_6g039180	26.515	396	220	13	102	434	80	467	7.79e-14	75.1
MS.gene07993.t1	MTR_6g039180	25.826	484	251	16	32	434	189	645	1.13e-12	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07993.t1	AT2G34930	37.288	472	244	9	17	465	460	902	1.63e-80	270
MS.gene07993.t1	AT2G34930	27.650	434	239	13	69	437	235	658	3.26e-19	92.0
MS.gene07993.t1	AT2G34930	26.897	290	160	7	6	293	639	878	1.40e-17	87.0
MS.gene07993.t1	AT2G34930	29.843	382	216	14	80	437	87	440	8.51e-16	81.3
MS.gene07993.t1	AT4G13810	32.500	520	310	19	11	511	20	517	3.56e-62	213
MS.gene07993.t1	AT4G04220	34.649	456	274	10	28	470	323	767	1.04e-61	217
MS.gene07993.t1	AT4G04220	31.926	379	201	10	86	435	110	460	6.05e-27	115
MS.gene07993.t1	AT4G04220	29.386	456	261	15	10	437	158	580	5.36e-23	103
MS.gene07993.t1	AT4G04220	33.486	218	129	4	219	428	101	310	5.54e-16	81.6
MS.gene07993.t1	AT4G04220	29.904	311	164	7	176	435	106	413	3.95e-15	79.0

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Find 83 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGATAACAAATAACAA+TGG	0.662615	6.3:+32497668	None:intergenic
AAATGATTATTTCTTTCACT+GGG	0.546165	6.3:-32499189	MS.gene07993:intron
AACTGCAAGCATTACTATTG+AGG	0.546054	6.3:-32497381	MS.gene07993:CDS
AAGATTATCTTCGTAAAAGG+AGG	0.598696	6.3:+32496646	None:intergenic
AATAGCAAATTTGATTCAAT+TGG	0.342657	6.3:-32496885	MS.gene07993:CDS
AATTCGCTTCCAATCCAATA+AGG	0.260922	6.3:+32497262	None:intergenic
AATTGAGTGCATTCTTGACA+TGG	0.597819	6.3:-32497003	MS.gene07993:CDS
ACAAATCTAACACATTAAGA+CGG	0.668098	6.3:+32496726	None:intergenic
ACAAGTGATCCCATTGAAGT+AGG	0.541466	6.3:+32497406	None:intergenic
ACGGTCTATGTGAGAAAGAC+TGG	0.424686	6.3:+32496745	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAGTGAAAACGGAAT+GGG	-	chr6.3:32497119-32497138	MS.gene07993:CDS	30.0%
AAGATTATCTTCGTAAAAGG+AGG	+	chr6.3:32498936-32498955	None:intergenic	30.0%
AATGACTCAAAAAGCTTCAT+CGG	-	chr6.3:32498490-32498509	MS.gene07993:intron	30.0%
AGATTAAGGTTTCAATTTGG+GGG	-	chr6.3:32497242-32497261	MS.gene07993:CDS	30.0%
AGTGAACCAAATGAAATTGT+GGG	-	chr6.3:32497153-32497172	MS.gene07993:CDS	30.0%
AGTGTGAAAATGAGTGAAAA+CGG	-	chr6.3:32497113-32497132	MS.gene07993:CDS	30.0%
ATAATGTGAAGTTGAAATGG+CGG	+	chr6.3:32497684-32497703	None:intergenic	30.0%
ATATTTACGTGAAATGCAGA+TGG	-	chr6.3:32499179-32499198	MS.gene07993:intron	30.0%
ATGAGTTCAAACTCATTAAG+TGG	-	chr6.3:32497561-32497580	MS.gene07993:CDS	30.0%
ATGCCAAATTTCTTGTAGTA+AGG	-	chr6.3:32497529-32497548	MS.gene07993:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	32496385	32499216	32496385	ID=MS.gene07993
chr6.3	mRNA	32496385	32499216	32496385	ID=MS.gene07993.t1;Parent=MS.gene07993
chr6.3	exon	32499190	32499216	32499190	ID=MS.gene07993.t1.exon1;Parent=MS.gene07993.t1
chr6.3	CDS	32499190	32499216	32499190	ID=cds.MS.gene07993.t1;Parent=MS.gene07993.t1
chr6.3	exon	32496385	32497974	32496385	ID=MS.gene07993.t1.exon2;Parent=MS.gene07993.t1
chr6.3	CDS	32496385	32497974	32496385	ID=cds.MS.gene07993.t1;Parent=MS.gene07993.t1

Gene Sequence

>MS.gene07993

ATGAGAAATGATTATTTCTTTCACTGGGTAAATATTTTCATTTTTCAACTACATAGAATCAAATATCGAAATCATTAACAATGAACGGAATCTGAATTCTGAACTTTGTCCACATTTTTCAGCTACTAAGGATCAAAATGCCAAATCTTTAAACAATGAACTTAATATGAACCAACCCACATTTCAAATTTATATTTTGAATCCGATGTATTAATCGATCCATAGTCCCGAATTACATGATTGTTTAAAAATCATCACTTTTGAACAATAGAGAATCTAAATCCCAAATTTTAAACTATGAACTTAATTCAGAGCATGAAAATTTTCAAGTTTAAACTTTGAATCCAATTTATTAATCATCCATCAACAATTTCAATTTACTCTTCATTTTCCAACTAATTAGAATGCAACTCCCAAATCCTTTTACAATGAACAAAACTGAAGGAAAAAAAATTAACAATAACAACAATAATAATAATAACAATACAAAAAATTAAGTAGATGAAAACGACCATCCAAAATCTGAAATCAAAGGTTGGATACTTACTTGTAAATCTGTGAAACGAGAACAAGAACCCAGTGGAAATCTGAAAATCTGTGAAATGAGAACAAGAACCCAGCCGGAAATCTGTTGAAAATATGAATGGGTCGAGCTAGAGAGTGAACCCAGCAGAAATCTGTTGAAAACGAGAGCTTAATGATAGTGAACCGAATGAGATTGTGGGTCGAGTGTGAAAATGAGTGAAAACGGAATGGGTCGAGCTAGAGAGTGAACCAAATGAAATTGTGGGTGAGAGCTTAAATTGAAATTAGGAAATGAAATTGGGGGAATGCTTCGATTGAGTTATGGGTGGTAGAGATTAAGGTTTCAATTTGGGGGAAAGTGAGATTGTGGATGAGAGGGGTGGAGATTTAGGTTTCAATTTGGGGGAAAGTGAATAGAATTTGGTTTTAGGGTTTTGGAGGTGTGGGAGGGAGAATGAAAATGGAAAAGTGGGAGTGATAGATATTTGGCTAAAAGAAGTGCGTTTGAAAAAAAAAGTTATAAAAGCTGCGACCCTTAAGCCCAACAGTCGCAATAACAGTCGCAAAAGTGCAATCTGTGACGGTTCTAAGCCAAGGGTCGCAGAGTAAGTGTCGCAAAATGCCAAATTTCTTGTAGTAAGGACACTACAAATGAGTTCAAACTCATTAAGTGGTGTGATCTCTGACTTCTATTTTTCTGGTATGTCAATGTTAAAGGAATTAGACTTGTCTGACAATTCACTAGCATTGACATTTACTGAAAATTGGGTCCCGCCATTTCAACTTCACATTATAGGATTGAGATCATGCAAACTTGGTCTTAAATTTCCTAAATGGATTCAGACACAAAAACACTTGACTGATCTCGATATTTCTAATGCTGGAATTTCTGGTAATGTTCCGGAGTGGTTTTGGTCTAAACTATCATCACAAGAGTGCAACTACATCAACATTTCAAACAACAATCTCAAAGGATCAATTCCAAATCTTCAAGTAAAAAACCATTGTTATTTGTTATCTCTTTCATCAAATGATTTTGAAGGGCCTATTCCACCATTTCTACGAGGTTCTGGTATTATTGATCTGTCCAAAAACAAATTCTTTGATTCTCGTCCATTCTTATGTGAAAATGGTATAGATGCAACGTTAGCTCAGTTTGAAGTTTTGAATAATCAATTATCTGGACAAGTTCCAAACTGTTGGAGAAATTTCAAGTCATTAGCTTATGTAGACTTAAGCCACAATAATTTTTCAGGGAAGATTCCTACTTCAATGGGATCACTTGTAGAACTGCAAGCATTACTATTGAGGAACAACAGCTTAACAGGGGAGATCCCTTTCTCCTTAATGAACTGCACAAAGTTGGTAATGCTTGATTTGAGAGACAACAGATTAGAAGGACTAATCCCTTATTGGATTGGAAGCGAATTAAAAGAGTTGCAAGTTTTAAGCTTACAAAAGAATCATTTCTTTGGAAGTTTACCTCTTGAAATTTGCTATCTACAAAACATCCAACTCTTTGATCTCTCATTCAACAAACTTTCTGGACGGATTCCAAAATGCATTAAAAATTTCACTTCAATGACTCAAAAAGCTTCATCGGAAGATTTAAGCAGTCATTGGTATGATATCAACCGAGGATTATACAATATGAGTCAAACATATGAATTGAGTGCATTCTTGACATGGAAAGGTGTAGAACAAGTGTTCAACAACAATGAATTGTTTCTTCTAAAAAGCATAGACCTCTCAAGCAATCACTTTTCCGGAGAGATTCTACCTGAAATAGCAAATTTGATTCAATTGGTCTCATTGAACTTATCAAGAAACAACTTCACAGGGAACATTCCTTCAAATATTGGAAAGCTAACATCACTTGACTTTCTTGATTTGTCACGAAACAAGTTGCTTGGTTCAATTCCTCCCAGTCTTTCTCACATAGACCGTCTTAATGTGTTAGATTTGTCGCATAATCAATTATCTGGAGAAATTCCAATGAGTACACAACTACAAAGTTTCAATGCCTCCTTTTACGAAGATAATCTTGATCTTTGTGGTCCACCACTTGTAAAATTGTGCCCTGAAGGAGAGACAACACGTGAAACAAAAGTAAAAATTCAAGACGATGAAGATTTGCTTCTCAATCGTGGATTTTACATCAGTCTGACATTCGGATTTATTATAGGCTTCTGGGGAGTGTTTGGCTCAATCATAATCAAGCATTCTTGGAGACATGCTTATTTCAAGTTCATGAACAATTTAGTGGATAATATTTACGTGAAATGCAGATGGTGGCTCAATTATTAA

Protein sequence

>MS.gene07993.t1

MRNDYFFHWELDLSDNSLALTFTENWVPPFQLHIIGLRSCKLGLKFPKWIQTQKHLTDLDISNAGISGNVPEWFWSKLSSQECNYINISNNNLKGSIPNLQVKNHCYLLSLSSNDFEGPIPPFLRGSGIIDLSKNKFFDSRPFLCENGIDATLAQFEVLNNQLSGQVPNCWRNFKSLAYVDLSHNNFSGKIPTSMGSLVELQALLLRNNSLTGEIPFSLMNCTKLVMLDLRDNRLEGLIPYWIGSELKELQVLSLQKNHFFGSLPLEICYLQNIQLFDLSFNKLSGRIPKCIKNFTSMTQKASSEDLSSHWYDINRGLYNMSQTYELSAFLTWKGVEQVFNNNELFLLKSIDLSSNHFSGEILPEIANLIQLVSLNLSRNNFTGNIPSNIGKLTSLDFLDLSRNKLLGSIPPSLSHIDRLNVLDLSHNQLSGEIPMSTQLQSFNASFYEDNLDLCGPPLVKLCPEGETTRETKVKIQDDEDLLLNRGFYISLTFGFIIGFWGVFGSIIIKHSWRHAYFKFMNNLVDNIYVKCRWWLNY