AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054468


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054468.t1 MTR_8g089895 97.468 237 6 0 1 237 1 237 1.09e-168 467
MS.gene054468.t1 MTR_3g086790 62.719 228 67 8 1 213 1 225 2.10e-83 251
MS.gene054468.t1 MTR_3g080100 44.811 212 108 4 1 207 1 208 1.27e-51 168
MS.gene054468.t1 MTR_3g080100 52.564 156 70 2 53 208 19 170 7.68e-45 149
MS.gene054468.t1 MTR_8g469430 50.000 164 63 3 45 207 81 226 8.09e-42 144
MS.gene054468.t1 MTR_5g038280 66.667 108 35 1 43 150 77 183 9.28e-42 145
MS.gene054468.t1 MTR_6g011610 49.007 151 71 2 4 149 23 172 2.26e-40 139
MS.gene054468.t1 MTR_6g007647 61.111 108 42 0 53 160 32 139 1.47e-39 137
MS.gene054468.t1 MTR_5g039000 45.455 176 87 3 40 208 65 238 2.29e-39 137
MS.gene054468.t1 MTR_6g007647 61.111 108 42 0 53 160 66 173 3.54e-39 137
MS.gene054468.t1 MTR_6g011610 45.902 183 82 5 43 209 86 267 5.75e-39 136
MS.gene054468.t1 MTR_8g468210 63.265 98 36 0 52 149 75 172 5.19e-38 134
MS.gene054468.t1 MTR_4g107650 54.400 125 56 1 26 150 68 191 3.98e-35 127
MS.gene054468.t1 MTR_7g010020 58.763 97 40 0 53 149 79 175 1.41e-30 114
MS.gene054468.t1 MTR_8g026960 48.544 103 53 0 61 163 41 143 1.16e-28 108
MS.gene054468.t1 MTR_7g103340 51.485 101 42 1 53 153 62 155 1.53e-27 105
MS.gene054468.t1 MTR_1g061660 41.135 141 73 3 53 193 58 188 2.40e-26 102
MS.gene054468.t1 MTR_3g092150 53.846 91 42 0 56 146 40 130 4.69e-26 102
MS.gene054468.t1 MTR_5g019680 54.455 101 37 1 54 154 53 144 1.02e-23 94.7
MS.gene054468.t1 MTR_4g100550 52.525 99 40 1 50 148 116 207 9.52e-22 91.3
MS.gene054468.t1 MTR_5g019650 61.972 71 27 0 54 124 53 123 3.20e-21 88.6
MS.gene054468.t1 MTR_4g097600 48.113 106 46 2 43 148 118 214 1.18e-18 82.8
MS.gene054468.t1 MTR_5g013010 49.495 99 43 1 50 148 132 223 1.22e-18 83.2
MS.gene054468.t1 MTR_4g126900 47.253 91 41 1 57 147 91 174 1.50e-18 81.6
MS.gene054468.t1 MTR_1g054285 44.000 125 60 2 27 148 124 241 2.19e-18 82.4
MS.gene054468.t1 MTR_1g017090 50.000 96 41 1 53 148 129 217 3.98e-18 81.6
MS.gene054468.t1 MTR_2g061030 44.340 106 52 1 43 148 189 287 9.40e-18 81.3
MS.gene054468.t1 MTR_5g014890 47.423 97 44 1 52 148 121 210 3.34e-17 78.6
MS.gene054468.t1 MTR_8g006705 48.958 96 42 1 53 148 145 233 4.11e-17 79.0
MS.gene054468.t1 MTR_7g093430 46.875 96 44 1 53 148 159 247 5.84e-17 78.6
MS.gene054468.t1 MTR_3g103590 49.351 77 39 0 49 125 140 216 2.57e-14 71.2
MS.gene054468.t1 MTR_4g084750 46.154 91 48 1 49 139 61 150 1.13e-13 67.8
MS.gene054468.t1 MTR_2g038625 42.017 119 56 4 43 161 76 181 3.97e-13 66.6
MS.gene054468.t1 MTR_2g038580 42.017 119 56 4 43 161 76 181 3.97e-13 66.6
MS.gene054468.t1 MTR_5g013010 55.357 56 25 0 50 105 132 187 4.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054468.t1 AT2G22430 56.221 217 73 5 1 198 2 215 5.03e-71 219
MS.gene054468.t1 AT4G40060 50.204 245 98 9 1 231 1 235 1.17e-65 205
MS.gene054468.t1 AT5G65310 56.140 171 57 5 1 153 1 171 1.01e-55 181
MS.gene054468.t1 AT5G65310 62.308 130 39 1 34 153 24 153 2.23e-52 171
MS.gene054468.t1 AT3G01470 63.107 103 38 0 53 155 67 169 8.25e-39 135
MS.gene054468.t1 AT1G69780 58.559 111 46 0 52 162 83 193 1.90e-38 135
MS.gene054468.t1 AT3G01220 56.364 110 48 0 40 149 73 182 9.92e-37 130
MS.gene054468.t1 AT5G15150 41.148 209 101 7 1 209 69 255 1.31e-36 131
MS.gene054468.t1 AT1G26960 56.757 111 48 0 52 162 69 179 2.93e-34 123
MS.gene054468.t1 AT2G46680 50.400 125 60 1 55 177 33 157 4.35e-33 120
MS.gene054468.t1 AT2G46680 48.780 123 63 0 55 177 33 155 7.77e-32 117
MS.gene054468.t1 AT1G27045 56.481 108 46 1 54 161 68 174 1.04e-29 111
MS.gene054468.t1 AT3G61890 52.632 95 45 0 57 151 33 127 1.20e-29 111
MS.gene054468.t1 AT1G27045 56.481 108 46 1 54 161 25 131 1.29e-29 109
MS.gene054468.t1 AT1G27045 56.481 108 46 1 54 161 25 131 1.29e-29 109
MS.gene054468.t1 AT1G27045 56.481 108 46 1 54 161 17 123 1.44e-29 109
MS.gene054468.t1 AT1G27045 58.065 93 39 0 54 146 68 160 1.02e-26 103
MS.gene054468.t1 AT5G03790 53.000 100 40 1 54 153 77 169 1.13e-26 103
MS.gene054468.t1 AT5G03790 62.500 72 27 0 54 125 77 148 1.08e-24 97.1
MS.gene054468.t1 AT2G36610 45.794 107 43 2 53 151 70 169 4.53e-23 92.8
MS.gene054468.t1 AT2G18550 36.047 172 80 5 54 215 61 212 5.29e-22 90.9
MS.gene054468.t1 AT5G66700 59.459 74 30 0 54 127 71 144 9.44e-22 90.1
MS.gene054468.t1 AT4G36740 52.577 97 39 1 54 150 55 144 3.05e-21 88.6
MS.gene054468.t1 AT4G36740 52.577 97 39 1 54 150 56 145 3.42e-21 88.6
MS.gene054468.t1 AT5G53980 44.444 99 55 0 54 152 11 109 2.88e-20 84.3
MS.gene054468.t1 AT5G06710 50.000 102 42 2 49 148 183 277 7.75e-19 84.3
MS.gene054468.t1 AT3G60390 46.226 106 50 1 43 148 151 249 1.23e-17 80.5
MS.gene054468.t1 AT4G37790 46.226 106 47 2 43 148 118 213 2.84e-17 79.0
MS.gene054468.t1 AT4G16780 48.958 96 42 1 53 148 128 216 4.49e-17 78.6
MS.gene054468.t1 AT2G44910 47.917 96 43 1 53 148 162 250 1.04e-16 78.2
MS.gene054468.t1 AT2G22800 46.226 106 47 2 43 148 105 200 2.33e-16 76.6
MS.gene054468.t1 AT4G17460 46.226 106 50 1 43 148 124 222 5.48e-16 75.5
MS.gene054468.t1 AT5G47370 46.226 106 50 1 43 148 119 217 1.78e-15 74.3
MS.gene054468.t1 AT2G01430 36.111 144 81 3 40 179 122 258 1.98e-15 73.9
MS.gene054468.t1 AT5G06710 52.381 63 26 1 43 105 183 241 5.62e-12 64.3
MS.gene054468.t1 AT2G01430 47.143 70 34 1 40 106 122 191 1.35e-11 62.4

Find 0 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAATGAAGAAAAAA+AGG - 57384:11906-11925 MS.gene054468:intergenic 10.0%
!! TAAAATACATTTATATGCTA+AGG - 57384:12798-12817 MS.gene054468:intergenic 15.0%
!!! AAAAAGGTATTACTTTTTAA+AGG - 57384:11890-11909 MS.gene054468:intergenic 15.0%
!! AATATAGTGAATAAAAAGGA+AGG - 57384:11958-11977 MS.gene054468:intergenic 20.0%
!! ATAACTATACTATACTTCTT+TGG + 57384:12606-12625 MS.gene054468:intron 20.0%
!! ATGCAATATAGTGAATAAAA+AGG - 57384:11962-11981 MS.gene054468:intergenic 20.0%
!! TTAGTGTATTAGATATTCAA+GGG - 57384:12718-12737 MS.gene054468:intergenic 20.0%
!! TTGAATATCTAATACACTAA+GGG + 57384:12718-12737 MS.gene054468:intron 20.0%
!!! TTTGTATCATATGCTTATTT+TGG + 57384:12897-12916 MS.gene054468:intron 20.0%
! AAACAATTGGAAAGAGATTA+TGG + 57384:12500-12519 MS.gene054468:CDS 25.0%
! AACTACGATTGTTTCAAAAA+CGG + 57384:13076-13095 MS.gene054468:CDS 25.0%
! AAGTTTAAGTGCATCATAAT+TGG - 57384:12537-12556 MS.gene054468:intergenic 25.0%
! AATATGAATTAACCTGTTGT+TGG - 57384:11748-11767 MS.gene054468:intergenic 25.0%
! AGGAATCAAGCATAAAAAAT+TGG - 57384:11938-11957 MS.gene054468:intergenic 25.0%
! ATAATCTCTTTCCAATTGTT+TGG - 57384:12501-12520 MS.gene054468:intergenic 25.0%
! ATATGAATTAACCTGTTGTT+GGG - 57384:11747-11766 MS.gene054468:intergenic 25.0%
! CTTAGTGTATTAGATATTCA+AGG - 57384:12719-12738 MS.gene054468:intergenic 25.0%
! CTTGAATATCTAATACACTA+AGG + 57384:12717-12736 MS.gene054468:intron 25.0%
! TACACTCTATAAAGATACTT+CGG - 57384:12845-12864 MS.gene054468:intergenic 25.0%
! TACTGTCATGTTTGATATTA+GGG + 57384:12007-12026 MS.gene054468:intron 25.0%
! TAGTGTATTAGATATTCAAG+GGG - 57384:12717-12736 MS.gene054468:intergenic 25.0%
! TTACTGTCATGTTTGATATT+AGG + 57384:12006-12025 MS.gene054468:intron 25.0%
!!! TAGTTGATTTGTCAGAATTA+CGG - 57384:12119-12138 MS.gene054468:intergenic 25.0%
AATATCTAATACACTAAGGG+CGG + 57384:12721-12740 MS.gene054468:intron 30.0%
AATCTCTTTGCATATAATGC+TGG + 57384:12749-12768 MS.gene054468:intron 30.0%
AGTGTATTAGATATTCAAGG+GGG - 57384:12716-12735 MS.gene054468:intergenic 30.0%
ATTGCAAGAATCAGAAAACA+CGG + 57384:13009-13028 MS.gene054468:CDS 30.0%
GTAGTTTAAGTCCTTAGAAT+CGG - 57384:13062-13081 MS.gene054468:intergenic 30.0%
!!! TATCATATGCTTATTTTGGC+AGG + 57384:12901-12920 MS.gene054468:intron 30.0%
AAAACAAGCTTGAACCAGAT+AGG + 57384:12393-12412 MS.gene054468:CDS 35.0%
ACTAAGTGTGGATCAAGTTA+AGG + 57384:12346-12365 MS.gene054468:CDS 35.0%
ATACTTCGGTACAATTCAGA+TGG - 57384:12831-12850 MS.gene054468:intergenic 35.0%
ATATAGAAGAAGAGAGTCCA+AGG + 57384:12231-12250 MS.gene054468:intron 35.0%
ATATCTAATACACTAAGGGC+GGG + 57384:12722-12741 MS.gene054468:intron 35.0%
CAATGAAACCTTACTCAAAG+AGG + 57384:12580-12599 MS.gene054468:CDS 35.0%
CAATGCATCTCAACTGAATT+AGG + 57384:12153-12172 MS.gene054468:intron 35.0%
CATTCTTAGATCCGATTCTA+AGG + 57384:13048-13067 MS.gene054468:CDS 35.0%
CTTAGAATCGGATCTAAGAA+TGG - 57384:13050-13069 MS.gene054468:intergenic 35.0%
GATTGTTTCAAAAACGGTGA+TGG + 57384:13082-13101 MS.gene054468:CDS 35.0%
GTGTATTAGATATTCAAGGG+GGG - 57384:12715-12734 MS.gene054468:intergenic 35.0%
GTTATGTACCTCTTTGAGTA+AGG - 57384:12591-12610 MS.gene054468:intergenic 35.0%
TAGATGGAAGACCAAACAAT+TGG + 57384:12487-12506 MS.gene054468:CDS 35.0%
TGTATTAGATATTCAAGGGG+GGG - 57384:12714-12733 MS.gene054468:intergenic 35.0%
!!! ATGCTTATTTTGGCAGGTTA+AGG + 57384:12907-12926 MS.gene054468:intron 35.0%
AACGCAGCAATTTCTTCATC+TGG + 57384:13184-13203 MS.gene054468:CDS 40.0%
ACGCAGCAATTTCTTCATCT+GGG + 57384:13185-13204 MS.gene054468:CDS 40.0%
AGAATCGGATCTAAGAATGG+CGG - 57384:13047-13066 MS.gene054468:intergenic 40.0%
AGTTGCTTCACTATTTCCTC+CGG + 57384:13105-13124 MS.gene054468:CDS 40.0%
ATGACAATTTGCCCAACAAC+AGG + 57384:11733-11752 MS.gene054468:CDS 40.0%
ATGGAAGGACTAGATGAAGA+AGG + 57384:12290-12309 MS.gene054468:CDS 40.0%
GAAATTCCCTTCCATACACT+TGG - 57384:12262-12281 MS.gene054468:intergenic 40.0%
GAACAACCAAGTGTATGGAA+GGG + 57384:12253-12272 MS.gene054468:CDS 40.0%
GAAGAAACGAAGACTAAGTG+TGG + 57384:12334-12353 MS.gene054468:CDS 40.0%
GTAAGGTTTCATTGTCACGT+TGG - 57384:12574-12593 MS.gene054468:intergenic 40.0%
TGTGGATCAAGTTAAGGCTT+TGG + 57384:12352-12371 MS.gene054468:CDS 40.0%
TTCATCTAGTCCTTCCATCA+CGG - 57384:12288-12307 MS.gene054468:intergenic 40.0%
TTTCCTCCGGATTTCAAAGA+CGG + 57384:13118-13137 MS.gene054468:CDS 40.0%
! AAGGATGTGTTGATGAACCA+GGG + 57384:12309-12328 MS.gene054468:CDS 40.0%
!! CATGAGAGCACCTAAAGAAT+CGG - 57384:11716-11735 MS.gene054468:intergenic 40.0%
!! GAAGAACCGTCTTTGAAATC+CGG - 57384:13127-13146 MS.gene054468:intergenic 40.0%
AACCAAACAGCAACCTGTCT+TGG - 57384:12452-12471 MS.gene054468:intergenic 45.0%
AAGGGAATTTCAGTCCGTGA+TGG + 57384:12271-12290 MS.gene054468:CDS 45.0%
CCAAGGAACAACCAAGTGTA+TGG + 57384:12248-12267 MS.gene054468:CDS 45.0%
CCATACACTTGGTTGTTCCT+TGG - 57384:12251-12270 MS.gene054468:intergenic 45.0%
GCAAGCTTCACTTTCCTATC+TGG - 57384:12410-12429 MS.gene054468:intergenic 45.0%
GGAACAACCAAGTGTATGGA+AGG + 57384:12252-12271 MS.gene054468:CDS 45.0%
TTCAAAACCGTCGTGCTAGA+TGG + 57384:12471-12490 MS.gene054468:CDS 45.0%
! AACCAAGACAGGTTGCTGTT+TGG + 57384:12447-12466 MS.gene054468:CDS 45.0%
! GAAGGATGTGTTGATGAACC+AGG + 57384:12308-12327 MS.gene054468:CDS 45.0%
! GAATTTCAGTCCGTGATGGA+AGG + 57384:12275-12294 MS.gene054468:CDS 45.0%
!! TAAAAAAAAATAAAATACTA+TGG + 57384:12039-12058 MS.gene054468:intron 5.0%
AGTCTTCGTTTCTTCTGCCC+TGG - 57384:12329-12348 MS.gene054468:intergenic 50.0%
CTTGGCAGCTCCGATTCTTT+AGG + 57384:11703-11722 MS.gene054468:CDS 50.0%
TGGTCTTCCATCTAGCACGA+CGG - 57384:12481-12500 MS.gene054468:intergenic 50.0%
! GTGAAGCTTGCTCAAGAGCT+TGG + 57384:12419-12438 MS.gene054468:CDS 50.0%
!! GAACCGTCTTTGAAATCCGG+AGG - 57384:13124-13143 MS.gene054468:intergenic 50.0%
!! GCTTGGTTTGCAACCAAGAC+AGG + 57384:12436-12455 MS.gene054468:CDS 50.0%


Chromosome Type Strat End Strand Name
57384 gene 11694 13207 11694 ID=MS.gene054468
57384 mRNA 11694 13207 11694 ID=MS.gene054468.t1;Parent=MS.gene054468
57384 exon 11694 11754 11694 ID=MS.gene054468.t1.exon1;Parent=MS.gene054468.t1
57384 CDS 11694 11754 11694 ID=cds.MS.gene054468.t1;Parent=MS.gene054468.t1
57384 exon 12237 12601 12237 ID=MS.gene054468.t1.exon2;Parent=MS.gene054468.t1
57384 CDS 12237 12601 12237 ID=cds.MS.gene054468.t1;Parent=MS.gene054468.t1
57384 exon 12923 13207 12923 ID=MS.gene054468.t1.exon3;Parent=MS.gene054468.t1
57384 CDS 12923 13207 12923 ID=cds.MS.gene054468.t1;Parent=MS.gene054468.t1
Gene Sequence

>MS.gene054468

ATGAAGAGACTTGGCAGCTCCGATTCTTTAGGTGCTCTCATGACAATTTGCCCAACAACAGGTTAATTCATATTTCAGACTTTATTTTATTTTTGTGCTACATATTAATTCAGACATAATATTCATAGTGCGTGTTTGTTCTTTGTTGTCATGTCTCAACATTTTTTACAATCTAGCATCTCATGTGTTTAGACCTTTAAAAAGTAATACCTTTTTTTCTTCATTATTTATTTATCTTACTCCAATTTTTTATGCTTGATTCCTTCCTTTTTATTCACTATATTGCATTACAACTCATCATTTTTAGTTCAATTACTGTCATGTTTGATATTAGGGTGAATTTATTAAAAAAAAATAAAATACTATGGTCTGATTTTTTTTAAAATTATACTTTGTAGCTTTTGCAAAATCACTTCAGATCACCGTAATTCTGACAAATCAACTATGATACAAAACATTCAATGCATCTCAACTGAATTAGGCTTGATAGTAACTGTTACTATGTGTACTTATATGTGTGATTTCTTGCATTGATTGATATAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCGTGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCTCAAGAGCTTGGTTTGCAACCAAGACAGGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAGACCAAACAATTGGAAAGAGATTATGGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAATTGTGAGAATCTCCAACGTGACAATGAAACCTTACTCAAAGAGGTACATAACTATACTATACTTCTTTGGCTGTAAAATTATTTTTTCAAATAGTGTTACAAAGATTTTTACTATATTTGTTTCTTTAACTAGTGTTACAGAGATACTAATGCCCCCCCTTGAATATCTAATACACTAAGGGCGGGTTCGAATCTCTTTGCATATAATGCTGGAGAATTACGAGTTTGATTTTACACCTTAGCATATAAATGTATTTTACAATCTTTTACCATCTGAATTGTACCGAAGTATCTTTATAGAGTGTATAGTGAAGAATAATATAAAGAGTTCTAAGAAATTTGTATCATATGCTTATTTTGGCAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACGGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGATTGTTTCAAAAACGGTGATGGAGTTGCTTCACTATTTCCTCCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGACGAAAGCAACGCAGCAATTTCTTCATCTGGG

Protein sequence

>MS.gene054468.t1

MKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSVMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCENLQRDNETLLKEVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNYDCFKNGDGVASLFPPDFKDGSSDSDSSAILNDESNAAISSSG