Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08021.t1 | AES75245.1 | 96.2 | 710 | 25 | 1 | 1 | 708 | 1 | 710 | 0.00E+00 | 1189.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08021.t1 | O80548 | 67.3 | 572 | 182 | 3 | 136 | 702 | 109 | 680 | 1.8e-218 | 760.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08021.t1 | G7KQ72 | 96.2 | 710 | 25 | 1 | 1 | 708 | 1 | 710 | 0.0e+00 | 1189.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08021 | MS.gene011370 | PPI |
| MS.gene08021 | MS.gene059971 | PPI |
| MS.gene08021 | MS.gene48290 | PPI |
| MS.gene08021 | MS.gene033329 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08021.t1 | MTR_6g034560 | 97.324 | 710 | 17 | 1 | 1 | 708 | 1 | 710 | 0.0 | 1424 |
| MS.gene08021.t1 | MTR_4g104360 | 54.314 | 707 | 302 | 7 | 1 | 697 | 1 | 696 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08021.t1 | AT1G22730 | 61.898 | 706 | 241 | 11 | 11 | 707 | 2 | 688 | 0.0 | 842 |
| MS.gene08021.t1 | AT5G63190 | 52.827 | 672 | 298 | 8 | 31 | 697 | 39 | 696 | 0.0 | 691 |
| MS.gene08021.t1 | AT5G63190 | 52.827 | 672 | 298 | 8 | 31 | 697 | 39 | 696 | 0.0 | 691 |
| MS.gene08021.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 662 |
| MS.gene08021.t1 | AT4G24800 | 41.639 | 305 | 173 | 3 | 97 | 401 | 397 | 696 | 3.05e-68 | 238 |
| MS.gene08021.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 662 |
| MS.gene08021.t1 | AT4G24800 | 41.639 | 305 | 173 | 3 | 97 | 401 | 397 | 696 | 3.05e-68 | 238 |
| MS.gene08021.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 662 |
| MS.gene08021.t1 | AT4G24800 | 41.639 | 305 | 173 | 3 | 97 | 401 | 397 | 696 | 3.05e-68 | 238 |
| MS.gene08021.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 662 |
| MS.gene08021.t1 | AT4G24800 | 41.639 | 305 | 173 | 3 | 97 | 401 | 397 | 696 | 3.05e-68 | 238 |
| MS.gene08021.t1 | AT3G48390 | 53.072 | 586 | 260 | 6 | 115 | 697 | 54 | 627 | 0.0 | 620 |
| MS.gene08021.t1 | AT3G48390 | 43.729 | 295 | 161 | 3 | 98 | 392 | 334 | 623 | 7.20e-72 | 246 |
| MS.gene08021.t1 | AT3G48390 | 42.193 | 301 | 160 | 6 | 412 | 706 | 52 | 344 | 8.83e-59 | 210 |
Find 113 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGTGAAGTTAGAGAAAT+TGG | 0.216068 | 6.3:+33408520 | MS.gene08021:CDS |
| ACAAAATAGTAACTGTATTC+TGG | 0.239051 | 6.3:-33408547 | None:intergenic |
| ACTATGTATCAAATGGTTAA+AGG | 0.247508 | 6.3:+33410056 | MS.gene08021:CDS |
| ATCAGCCGATTCGACTAATT+TGG | 0.249351 | 6.3:-33408689 | None:intergenic |
| TGAAGAAGCTCTTGATGATT+TGG | 0.280860 | 6.3:+33410091 | MS.gene08021:CDS |
| CTTCCGTTGACTTGCGCCTT+TGG | 0.295265 | 6.3:-33407160 | None:intergenic |
| AGTCGAATCGGCTGATGATT+TGG | 0.305301 | 6.3:+33408696 | MS.gene08021:CDS |
| TATCAAATGGTTAAAGGGTT+TGG | 0.310183 | 6.3:+33410062 | MS.gene08021:CDS |
| TGTCATTGTACAGGTGGTTT+TGG | 0.326317 | 6.3:+33408043 | MS.gene08021:intron |
| CTTTGGAGACCTTGGAGACT+TGG | 0.330870 | 6.3:-33407143 | None:intergenic |
| CTGTCATAGTTCGGATCATT+GGG | 0.332315 | 6.3:-33408121 | None:intergenic |
| CATCAGCTGCTTCTTTCAAT+AGG | 0.338447 | 6.3:-33409119 | None:intergenic |
| AGCTCTTGATGATTTGGCTT+TGG | 0.347710 | 6.3:+33410097 | MS.gene08021:CDS |
| ATCTTGAGATGTTGGGGTGG+GGG | 0.350219 | 6.3:+33409801 | MS.gene08021:CDS |
| CTATGTATCAAATGGTTAAA+GGG | 0.356224 | 6.3:+33410057 | MS.gene08021:CDS |
| CGGAAATCATCGAGCGGCGC+TGG | 0.358374 | 6.3:+33408896 | MS.gene08021:CDS |
| GAAGATGTGAAGGATATGAT+AGG | 0.358734 | 6.3:+33409852 | MS.gene08021:CDS |
| TGAGGTTGTTAAGAAAAGTT+TGG | 0.364181 | 6.3:+33409962 | MS.gene08021:CDS |
| TTGCTAAAAGCAAGACTTGC+TGG | 0.369049 | 6.3:+33409771 | MS.gene08021:CDS |
| ATGAAGCTCGAGATGCTCTT+TGG | 0.383039 | 6.3:-33407062 | None:intergenic |
| TTCAAGAATGCAACAGAGAA+TGG | 0.383703 | 6.3:+33410200 | MS.gene08021:CDS |
| TCAGCTCCTTTAGAATCATT+TGG | 0.390417 | 6.3:-33408826 | None:intergenic |
| TGCAAAGGAGAAACAGTTAC+TGG | 0.401474 | 6.3:-33407109 | None:intergenic |
| AGTGAAAAGAGCTCTTATAA+TGG | 0.408893 | 6.3:+33409059 | MS.gene08021:CDS |
| TGAAGTATTCCGCGTGCGTT+CGG | 0.411426 | 6.3:-33409222 | None:intergenic |
| CGCTATGTTTCTTGCAAGAT+CGG | 0.413923 | 6.3:+33409647 | MS.gene08021:CDS |
| ACATCTTCAATTTCCCATCC+TGG | 0.421189 | 6.3:-33409837 | None:intergenic |
| ACTATTTCATGATGAAAGAA+AGG | 0.422014 | 6.3:-33409039 | None:intergenic |
| TGTAGATGCATGAAAGAGTT+AGG | 0.427178 | 6.3:+33409921 | MS.gene08021:CDS |
| TGAGAGAATCTTGAGATGTT+GGG | 0.443902 | 6.3:+33409794 | MS.gene08021:CDS |
| TTGAAGCACTTTGCTTCCAA+TGG | 0.444863 | 6.3:-33409736 | None:intergenic |
| GCTGTCATAGTTCGGATCAT+TGG | 0.450298 | 6.3:-33408122 | None:intergenic |
| GGTGGTAAAGGCACCTGGGG+TGG | 0.450402 | 6.3:+33408064 | MS.gene08021:CDS |
| AACACAAGCCAAATGTCAAA+AGG | 0.450721 | 6.3:+33409153 | MS.gene08021:CDS |
| AAAGCTTGTTTCGATGTCAA+TGG | 0.452801 | 6.3:+33408573 | MS.gene08021:CDS |
| AAAAGAAGAATGAGAGATTG+TGG | 0.455584 | 6.3:+33409997 | MS.gene08021:CDS |
| ACCTCAGTGCTGTCATAGTT+CGG | 0.456364 | 6.3:-33408130 | None:intergenic |
| GGAAATCATCGAGCGGCGCT+GGG | 0.456552 | 6.3:+33408897 | MS.gene08021:CDS |
| ATTGCGATGGATTTCAATGA+TGG | 0.460383 | 6.3:+33407031 | None:intergenic |
| ATTAATAACTATGTATCAAA+TGG | 0.462836 | 6.3:+33410049 | MS.gene08021:CDS |
| TTGAAAGAGTATGTAGTAAG+TGG | 0.463749 | 6.3:+33408973 | MS.gene08021:CDS |
| AATCTTGAGATGTTGGGGTG+GGG | 0.469675 | 6.3:+33409800 | MS.gene08021:CDS |
| GCAAACTGATTCTTAGCATC+AGG | 0.470425 | 6.3:-33410125 | None:intergenic |
| GCTAGAATATCAACCGTGTC+CGG | 0.480548 | 6.3:-33408730 | None:intergenic |
| GGATATGATAGGGAAATTGT+TGG | 0.481307 | 6.3:+33409863 | MS.gene08021:CDS |
| TTTGGAGACCTTGGAGACTT+GGG | 0.482915 | 6.3:-33407142 | None:intergenic |
| AAAGAATAGAGAGAAAGAAA+TGG | 0.492573 | 6.3:+33409506 | MS.gene08021:CDS |
| ACTTGCGCCTTTGGAGACCT+TGG | 0.497395 | 6.3:-33407151 | None:intergenic |
| AAAGAAGAATGAGAGATTGT+GGG | 0.498648 | 6.3:+33409998 | MS.gene08021:CDS |
| GTGAGAGAATCTTGAGATGT+TGG | 0.499361 | 6.3:+33409793 | MS.gene08021:CDS |
| TTGAAAGAAGCAGCTGATGA+AGG | 0.506085 | 6.3:+33409123 | MS.gene08021:CDS |
| ATTCACCAAATTAGTCGAAT+CGG | 0.507940 | 6.3:+33408684 | MS.gene08021:CDS |
| AAACCACTCACAACATCATC+GGG | 0.513681 | 6.3:-33409561 | None:intergenic |
| GAATCTTGAGATGTTGGGGT+GGG | 0.520362 | 6.3:+33409799 | MS.gene08021:CDS |
| TTGTTGGAGGAATATGAATC+TGG | 0.521956 | 6.3:+33409879 | MS.gene08021:CDS |
| TGGAAGCAAAGTGCTTCAAA+TGG | 0.525673 | 6.3:+33409740 | MS.gene08021:CDS |
| GCGAGATCTTCAACAACTAC+AGG | 0.525699 | 6.3:-33409627 | None:intergenic |
| TCTTTCAATAGGTCTAATAA+CGG | 0.526486 | 6.3:-33409108 | None:intergenic |
| AACGATGGACGTCCAAAGAA+AGG | 0.527199 | 6.3:+33407223 | MS.gene08021:CDS |
| TAGAGAGAAAGAAATGGCTT+CGG | 0.528261 | 6.3:+33409512 | MS.gene08021:CDS |
| AAGATGTGAAGGATATGATA+GGG | 0.528908 | 6.3:+33409853 | MS.gene08021:CDS |
| TGGAAGTAGCAAACCAGGAT+GGG | 0.530192 | 6.3:+33409824 | MS.gene08021:CDS |
| GTGGAAGTAGCAAACCAGGA+TGG | 0.539492 | 6.3:+33409823 | MS.gene08021:CDS |
| TGATTTGGTCGTAGATATAC+CGG | 0.539884 | 6.3:+33408711 | MS.gene08021:CDS |
| GCCTGAAAAGAACACAATAC+AGG | 0.542008 | 6.3:+33409314 | MS.gene08021:CDS |
| TCGATGATTTCCGCGTGTAA+AGG | 0.546232 | 6.3:-33408886 | None:intergenic |
| AAGAGCTCTTATAATGGCGA+TGG | 0.546680 | 6.3:+33409065 | MS.gene08021:CDS |
| AAAACCACTCACAACATCAT+CGG | 0.549432 | 6.3:-33409562 | None:intergenic |
| AATCCTTTGTAAACTTGTGA+AGG | 0.549640 | 6.3:-33408664 | None:intergenic |
| TGTATAAGTCAAGATTCCAT+TGG | 0.552180 | 6.3:+33409720 | MS.gene08021:CDS |
| TTTCTTCTCCCAAGTCTCCA+AGG | 0.552330 | 6.3:+33407134 | MS.gene08021:CDS |
| TCTCCAAAGGCGCAAGTCAA+CGG | 0.554371 | 6.3:+33407157 | MS.gene08021:CDS |
| ACACAAGCCAAATGTCAAAA+GGG | 0.556517 | 6.3:+33409154 | MS.gene08021:CDS |
| AAAGCTAATAACATTAGCAA+TGG | 0.558746 | 6.3:+33409479 | MS.gene08021:CDS |
| ATCATCGAGCGGCGCTGGGG+AGG | 0.563878 | 6.3:+33408901 | MS.gene08021:CDS |
| ATGGGAAATTGAAGATGTGA+AGG | 0.563972 | 6.3:+33409842 | MS.gene08021:CDS |
| TTTGGTGGTAAAGGCACCTG+GGG | 0.566061 | 6.3:+33408061 | MS.gene08021:CDS |
| CCGCAACATCTCGAAGATGT+TGG | 0.567897 | 6.3:+33409690 | MS.gene08021:CDS |
| TACAACAGTTGATGATGTGA+AGG | 0.568694 | 6.3:+33408933 | MS.gene08021:CDS |
| TGTCTCAAGCAATCCACCCC+AGG | 0.573534 | 6.3:-33408077 | None:intergenic |
| CACCCTTCACAAGTTTACAA+AGG | 0.573720 | 6.3:+33408661 | MS.gene08021:CDS |
| TTGGGAGAAGAAAGTTGCAA+AGG | 0.576893 | 6.3:-33407124 | None:intergenic |
| CGAAAGCCGCGTCCGATGGT+TGG | 0.577219 | 6.3:+33409256 | MS.gene08021:CDS |
| CCAACATCTTCGAGATGTTG+CGG | 0.578099 | 6.3:-33409690 | None:intergenic |
| ATGTCGAAAGCCGCGTCCGA+TGG | 0.580182 | 6.3:+33409252 | MS.gene08021:CDS |
| GGTTGACGACATTCTTCCAC+CGG | 0.583258 | 6.3:+33408774 | MS.gene08021:CDS |
| TATGATAGGGAAATTGTTGG+AGG | 0.589950 | 6.3:+33409866 | MS.gene08021:CDS |
| ACATAACCAACCATCGGACG+CGG | 0.592261 | 6.3:-33409262 | None:intergenic |
| TTGTGAAGGGTGAATTATGT+CGG | 0.594576 | 6.3:-33408650 | None:intergenic |
| CAAGTCTCCAAGGTCTCCAA+AGG | 0.596354 | 6.3:+33407144 | MS.gene08021:CDS |
| AACTTGCCAAATGATTCTAA+AGG | 0.596703 | 6.3:+33408820 | MS.gene08021:CDS |
| AGAATCTTGAGATGTTGGGG+TGG | 0.600770 | 6.3:+33409798 | MS.gene08021:CDS |
| CCACCCGATGATGTTGTGAG+TGG | 0.605323 | 6.3:+33409558 | MS.gene08021:CDS |
| AAGAAGAATGAGAGATTGTG+GGG | 0.613511 | 6.3:+33409999 | MS.gene08021:CDS |
| CAGTTGATGATGTGAAGGCA+AGG | 0.614475 | 6.3:+33408938 | MS.gene08021:CDS |
| AAATGATTCTAAAGGAGCTG+AGG | 0.620031 | 6.3:+33408828 | MS.gene08021:CDS |
| AAATGTCAAAAGGGTTCACA+AGG | 0.623824 | 6.3:+33409163 | MS.gene08021:CDS |
| GAGAGAATCTTGAGATGTTG+GGG | 0.624381 | 6.3:+33409795 | MS.gene08021:CDS |
| CTCGATATACCGAACGCACG+CGG | 0.625689 | 6.3:+33409213 | MS.gene08021:CDS |
| ATCCTTTGTAAACTTGTGAA+GGG | 0.631092 | 6.3:-33408663 | None:intergenic |
| CAATCACATTCTTCAAACGA+TGG | 0.637153 | 6.3:+33407208 | MS.gene08021:CDS |
| CTTTGCCACAGATGATGTTG+TGG | 0.639840 | 6.3:+33408492 | MS.gene08021:CDS |
| GAAATCATCGAGCGGCGCTG+GGG | 0.644477 | 6.3:+33408898 | MS.gene08021:CDS |
| ATCGAGCGATAAATCATCGA+CGG | 0.647255 | 6.3:-33409196 | None:intergenic |
| TGAAACACATAACCAACCAT+CGG | 0.652386 | 6.3:-33409268 | None:intergenic |
| TGTTGCCACAACATCATCTG+TGG | 0.665084 | 6.3:-33408497 | None:intergenic |
| CCACTCACAACATCATCGGG+TGG | 0.665991 | 6.3:-33409558 | None:intergenic |
| GGTCGTAGATATACCGGACA+CGG | 0.696720 | 6.3:+33408717 | MS.gene08021:CDS |
| TGTCATAGTTCGGATCATTG+GGG | 0.697339 | 6.3:-33408120 | None:intergenic |
| TACACGCGGAAATCATCGAG+CGG | 0.700364 | 6.3:+33408890 | MS.gene08021:CDS |
| TTGGAGGAATATGAATCTGG+TGG | 0.719160 | 6.3:+33409882 | MS.gene08021:CDS |
| TCTAACAGCACCTTTACACG+CGG | 0.727798 | 6.3:+33408876 | MS.gene08021:CDS |
| TCCGAACTATGACAGCACTG+AGG | 0.805865 | 6.3:+33408129 | MS.gene08021:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAACTATGTATCAAA+TGG | + | chr6.3:33410049-33410068 | MS.gene08021:CDS | 15.0% |
| !!! | AACTATTTATATTGTTTTGT+AGG | + | chr6.3:33408387-33408406 | MS.gene08021:intron | 15.0% |
| !! | ATAAATAGTTTCATAGTTGT+TGG | - | chr6.3:33408377-33408396 | None:intergenic | 20.0% |
| !! | ATTCAAGTCCAAAAAATAAT+AGG | + | chr6.3:33407185-33407204 | MS.gene08021:CDS | 20.0% |
| !! | CATCGAAAATATTTATATTG+TGG | - | chr6.3:33407380-33407399 | None:intergenic | 20.0% |
| !!! | AAATCAGTATTGGTAAATAT+CGG | + | chr6.3:33408207-33408226 | MS.gene08021:intron | 20.0% |
| !!! | TATTTATCACGTATATTTTG+TGG | - | chr6.3:33407316-33407335 | None:intergenic | 20.0% |
| ! | AAAGAATAGAGAGAAAGAAA+TGG | + | chr6.3:33409506-33409525 | MS.gene08021:CDS | 25.0% |
| ! | AAAGCTAATAACATTAGCAA+TGG | + | chr6.3:33409479-33409498 | MS.gene08021:CDS | 25.0% |
| ! | AAGTTGCTACAATAAGATAA+TGG | - | chr6.3:33408173-33408192 | None:intergenic | 25.0% |
| ! | ACAAAATAGTAACTGTATTC+TGG | - | chr6.3:33408550-33408569 | None:intergenic | 25.0% |
| ! | ACTATGTATCAAATGGTTAA+AGG | + | chr6.3:33410056-33410075 | MS.gene08021:CDS | 25.0% |
| ! | ACTATTTCATGATGAAAGAA+AGG | - | chr6.3:33409042-33409061 | None:intergenic | 25.0% |
| ! | AGGATTTATCATAATGAAAC+AGG | - | chr6.3:33407850-33407869 | None:intergenic | 25.0% |
| ! | ATCAAATGACTAAACAAAAG+AGG | - | chr6.3:33407929-33407948 | None:intergenic | 25.0% |
| ! | ATCTGAACTTTCTAAATACT+TGG | + | chr6.3:33407543-33407562 | MS.gene08021:intron | 25.0% |
| ! | CTATCACAATGAGAAAAAAT+CGG | - | chr6.3:33407517-33407536 | None:intergenic | 25.0% |
| ! | CTATGTATCAAATGGTTAAA+GGG | + | chr6.3:33410057-33410076 | MS.gene08021:CDS | 25.0% |
| ! | TATATGGATCAAATCAGTAT+TGG | + | chr6.3:33408197-33408216 | MS.gene08021:intron | 25.0% |
| ! | TCTTTCAATAGGTCTAATAA+CGG | - | chr6.3:33409111-33409130 | None:intergenic | 25.0% |
| ! | TGTGTGTGTAAATTATACAA+GGG | + | chr6.3:33407600-33407619 | MS.gene08021:intron | 25.0% |
| ! | TTCAAAATAGATACACACTA+GGG | - | chr6.3:33407808-33407827 | None:intergenic | 25.0% |
| ! | TTGAAAAGTGAAAAGACAAA+TGG | - | chr6.3:33407265-33407284 | None:intergenic | 25.0% |
| ! | TTGTAGCAACTTACATTATA+TGG | + | chr6.3:33408181-33408200 | MS.gene08021:intron | 25.0% |
| ! | TTTCAAAATAGATACACACT+AGG | - | chr6.3:33407809-33407828 | None:intergenic | 25.0% |
| !!! | ATTCAAGAGTACTTTTTATC+AGG | + | chr6.3:33409378-33409397 | MS.gene08021:CDS | 25.0% |
| !!! | CTTAAAGAATGTTTTGAATC+TGG | + | chr6.3:33410026-33410045 | MS.gene08021:CDS | 25.0% |
| !!! | TAAAAAGTACTCTTGAATGA+TGG | - | chr6.3:33409376-33409395 | None:intergenic | 25.0% |
| !!! | TGAATCTTGAGTTATTTTGA+TGG | + | chr6.3:33407957-33407976 | MS.gene08021:intron | 25.0% |
| !!! | TGTGATTGCCTATTATTTTT+TGG | - | chr6.3:33407196-33407215 | None:intergenic | 25.0% |
| AAAAAGCAAAGAATGAAGGA+TGG | + | chr6.3:33410159-33410178 | MS.gene08021:CDS | 30.0% | |
| AAAAGAAGAATGAGAGATTG+TGG | + | chr6.3:33409997-33410016 | MS.gene08021:CDS | 30.0% | |
| AAAGAAAAAGAACACTGCAT+TGG | + | chr6.3:33408429-33408448 | MS.gene08021:CDS | 30.0% | |
| AAAGAAGAATGAGAGATTGT+GGG | + | chr6.3:33409998-33410017 | MS.gene08021:CDS | 30.0% | |
| AAATCAAAATATTGAGACCC+TGG | - | chr6.3:33407661-33407680 | None:intergenic | 30.0% | |
| AACTTGCCAAATGATTCTAA+AGG | + | chr6.3:33408820-33408839 | MS.gene08021:CDS | 30.0% | |
| AAGATGTGAAGGATATGATA+GGG | + | chr6.3:33409853-33409872 | MS.gene08021:CDS | 30.0% | |
| AATCCTTTGTAAACTTGTGA+AGG | - | chr6.3:33408667-33408686 | None:intergenic | 30.0% | |
| AATGTGATCCGTATAAGTTT+AGG | - | chr6.3:33407882-33407901 | None:intergenic | 30.0% | |
| ACAACCTCATGATGAAAAAA+TGG | - | chr6.3:33409951-33409970 | None:intergenic | 30.0% | |
| ACACGACAAAGAAAAAGAAA+TGG | + | chr6.3:33408600-33408619 | MS.gene08021:CDS | 30.0% | |
| AGTGAAAAGAGCTCTTATAA+TGG | + | chr6.3:33409059-33409078 | MS.gene08021:CDS | 30.0% | |
| ATCCTTTGTAAACTTGTGAA+GGG | - | chr6.3:33408666-33408685 | None:intergenic | 30.0% | |
| ATTCACCAAATTAGTCGAAT+CGG | + | chr6.3:33408684-33408703 | MS.gene08021:CDS | 30.0% | |
| ATTCAGCACCTAAACTTATA+CGG | + | chr6.3:33407871-33407890 | MS.gene08021:intron | 30.0% | |
| CTTGATATTGCGACAAATAT+GGG | - | chr6.3:33407453-33407472 | None:intergenic | 30.0% | |
| GTGTGTGTGTAAATTATACA+AGG | + | chr6.3:33407599-33407618 | MS.gene08021:intron | 30.0% | |
| GTTATGTTCAAATCGCATAA+CGG | - | chr6.3:33408004-33408023 | None:intergenic | 30.0% | |
| GTTGAAAAAGCAAAGAATGA+AGG | + | chr6.3:33410155-33410174 | MS.gene08021:CDS | 30.0% | |
| TATCAAATGGTTAAAGGGTT+TGG | + | chr6.3:33410062-33410081 | MS.gene08021:CDS | 30.0% | |
| TGAACAAACAGAATGTATTC+TGG | + | chr6.3:33408270-33408289 | MS.gene08021:intron | 30.0% | |
| TGAGGTTGTTAAGAAAAGTT+TGG | + | chr6.3:33409962-33409981 | MS.gene08021:CDS | 30.0% | |
| TGATATTGCAACCTTAATTG+CGG | + | chr6.3:33407409-33407428 | MS.gene08021:intron | 30.0% | |
| TGATGGTTGAATCTTGAAAT+AGG | + | chr6.3:33407974-33407993 | MS.gene08021:intron | 30.0% | |
| TGTATAAGTCAAGATTCCAT+TGG | + | chr6.3:33409720-33409739 | MS.gene08021:CDS | 30.0% | |
| ! | ACTAGGGATTCATATTGATT+GGG | - | chr6.3:33407792-33407811 | None:intergenic | 30.0% |
| ! | ATCTGTTTCTTCAAAAATGC+CGG | - | chr6.3:33408796-33408815 | None:intergenic | 30.0% |
| ! | TTGAAAGAGTATGTAGTAAG+TGG | + | chr6.3:33408973-33408992 | MS.gene08021:CDS | 30.0% |
| !! | ATAGACGTAGTTTTACATTG+CGG | + | chr6.3:33407335-33407354 | MS.gene08021:intron | 30.0% |
| !!! | CTTATACGGATCACATTTTT+TGG | + | chr6.3:33407885-33407904 | MS.gene08021:intron | 30.0% |
| !!! | TATGCCATTTTTTCATCATG+AGG | + | chr6.3:33409944-33409963 | MS.gene08021:CDS | 30.0% |
| AAAAACACTCCACCTTTCTT+TGG | - | chr6.3:33407238-33407257 | None:intergenic | 35.0% | |
| AAAACCACTCACAACATCAT+CGG | - | chr6.3:33409565-33409584 | None:intergenic | 35.0% | |
| AAATGTCAAAAGGGTTCACA+AGG | + | chr6.3:33409163-33409182 | MS.gene08021:CDS | 35.0% | |
| AACACAAGCCAAATGTCAAA+AGG | + | chr6.3:33409153-33409172 | MS.gene08021:CDS | 35.0% | |
| AAGAAGAATGAGAGATTGTG+GGG | + | chr6.3:33409999-33410018 | MS.gene08021:CDS | 35.0% | |
| ACACAAGCCAAATGTCAAAA+GGG | + | chr6.3:33409154-33409173 | MS.gene08021:CDS | 35.0% | |
| ACATTCACAAGATTCAACCA+TGG | - | chr6.3:33408026-33408045 | None:intergenic | 35.0% | |
| ATGCGATTTGAACATAACCA+TGG | + | chr6.3:33408006-33408025 | MS.gene08021:intron | 35.0% | |
| ATGGGAAATTGAAGATGTGA+AGG | + | chr6.3:33409842-33409861 | MS.gene08021:CDS | 35.0% | |
| CAAGAGAACAACAAAAACTG+TGG | + | chr6.3:33409432-33409451 | MS.gene08021:CDS | 35.0% | |
| CAATCACATTCTTCAAACGA+TGG | + | chr6.3:33407208-33407227 | MS.gene08021:CDS | 35.0% | |
| CACTAGGGATTCATATTGAT+TGG | - | chr6.3:33407793-33407812 | None:intergenic | 35.0% | |
| CCATATTTGTCGCAATATCA+AGG | + | chr6.3:33407451-33407470 | MS.gene08021:intron | 35.0% | |
| CCTTGATATTGCGACAAATA+TGG | - | chr6.3:33407454-33407473 | None:intergenic | 35.0% | |
| CTGAGTGAAGTTAGAGAAAT+TGG | + | chr6.3:33408520-33408539 | MS.gene08021:CDS | 35.0% | |
| GAAGATGTGAAGGATATGAT+AGG | + | chr6.3:33409852-33409871 | MS.gene08021:CDS | 35.0% | |
| GGATATGATAGGGAAATTGT+TGG | + | chr6.3:33409863-33409882 | MS.gene08021:CDS | 35.0% | |
| TAGAGAGAAAGAAATGGCTT+CGG | + | chr6.3:33409512-33409531 | MS.gene08021:CDS | 35.0% | |
| TATGATAGGGAAATTGTTGG+AGG | + | chr6.3:33409866-33409885 | MS.gene08021:CDS | 35.0% | |
| TCTTGTGAATGTCATTGTAC+AGG | + | chr6.3:33408034-33408053 | MS.gene08021:intron | 35.0% | |
| TGAAACACATAACCAACCAT+CGG | - | chr6.3:33409271-33409290 | None:intergenic | 35.0% | |
| TGAGAGAATCTTGAGATGTT+GGG | + | chr6.3:33409794-33409813 | MS.gene08021:CDS | 35.0% | |
| TGTAGATGCATGAAAGAGTT+AGG | + | chr6.3:33409921-33409940 | MS.gene08021:CDS | 35.0% | |
| TTCAAGAATGCAACAGAGAA+TGG | + | chr6.3:33410200-33410219 | MS.gene08021:CDS | 35.0% | |
| TTGTGAAGGGTGAATTATGT+CGG | - | chr6.3:33408653-33408672 | None:intergenic | 35.0% | |
| TTGTTGGAGGAATATGAATC+TGG | + | chr6.3:33409879-33409898 | MS.gene08021:CDS | 35.0% | |
| ! | AAAGCTTGTTTCGATGTCAA+TGG | + | chr6.3:33408573-33408592 | MS.gene08021:CDS | 35.0% |
| ! | AAATGATTCTAAAGGAGCTG+AGG | + | chr6.3:33408828-33408847 | MS.gene08021:CDS | 35.0% |
| ! | ATCTGGTGGTGATAAAAAAG+AGG | + | chr6.3:33409896-33409915 | MS.gene08021:CDS | 35.0% |
| ! | CTTGATAACTTCTTCCACTA+CGG | + | chr6.3:33407287-33407306 | MS.gene08021:intron | 35.0% |
| ! | TCCTGTATTGTGTTCTTTTC+AGG | - | chr6.3:33409318-33409337 | None:intergenic | 35.0% |
| ! | TGAAGAAGCTCTTGATGATT+TGG | + | chr6.3:33410091-33410110 | MS.gene08021:CDS | 35.0% |
| ! | TTGTGAACCCTTTTGACATT+TGG | - | chr6.3:33409164-33409183 | None:intergenic | 35.0% |
| !! | ATAAGTTTAGGTGCTGAATG+AGG | - | chr6.3:33407870-33407889 | None:intergenic | 35.0% |
| !! | TACAACAGTTGATGATGTGA+AGG | + | chr6.3:33408933-33408952 | MS.gene08021:CDS | 35.0% |
| !! | TCAGCTCCTTTAGAATCATT+TGG | - | chr6.3:33408829-33408848 | None:intergenic | 35.0% |
| !! | TGAGAAAGTGTTTGTGTTCA+TGG | + | chr6.3:33407711-33407730 | MS.gene08021:intron | 35.0% |
| !! | TGATTTGGTCGTAGATATAC+CGG | + | chr6.3:33408711-33408730 | MS.gene08021:CDS | 35.0% |
| AAAAGAGGCTGACGATACAA+AGG | - | chr6.3:33407914-33407933 | None:intergenic | 40.0% | |
| AAACCACTCACAACATCATC+GGG | - | chr6.3:33409564-33409583 | None:intergenic | 40.0% | |
| AAATCGGCACCTTGATATCA+TGG | - | chr6.3:33407501-33407520 | None:intergenic | 40.0% | |
| AAGAGCTCTTATAATGGCGA+TGG | + | chr6.3:33409065-33409084 | MS.gene08021:CDS | 40.0% | |
| ACATCTTCAATTTCCCATCC+TGG | - | chr6.3:33409840-33409859 | None:intergenic | 40.0% | |
| ATCGAGCGATAAATCATCGA+CGG | - | chr6.3:33409199-33409218 | None:intergenic | 40.0% | |
| ATGACTCATGACATACACCA+GGG | + | chr6.3:33407641-33407660 | MS.gene08021:intron | 40.0% | |
| ATGGGAAAATGAGGCTAATG+CGG | - | chr6.3:33407435-33407454 | None:intergenic | 40.0% | |
| CACCCTTCACAAGTTTACAA+AGG | + | chr6.3:33408661-33408680 | MS.gene08021:CDS | 40.0% | |
| CATCAGCTGCTTCTTTCAAT+AGG | - | chr6.3:33409122-33409141 | None:intergenic | 40.0% | |
| CGCTATGTTTCTTGCAAGAT+CGG | + | chr6.3:33409647-33409666 | MS.gene08021:CDS | 40.0% | |
| CTGTCATAGTTCGGATCATT+GGG | - | chr6.3:33408124-33408143 | None:intergenic | 40.0% | |
| GAGAGAATCTTGAGATGTTG+GGG | + | chr6.3:33409795-33409814 | MS.gene08021:CDS | 40.0% | |
| GCCTGAAAAGAACACAATAC+AGG | + | chr6.3:33409314-33409333 | MS.gene08021:CDS | 40.0% | |
| GCGACAAATATGGGAAAATG+AGG | - | chr6.3:33407444-33407463 | None:intergenic | 40.0% | |
| GTGAGAGAATCTTGAGATGT+TGG | + | chr6.3:33409793-33409812 | MS.gene08021:CDS | 40.0% | |
| TGATCCAGTAATGTCAATCG+CGG | - | chr6.3:33408305-33408324 | None:intergenic | 40.0% | |
| TGCAAAGGAGAAACAGTTAC+TGG | - | chr6.3:33407112-33407131 | None:intergenic | 40.0% | |
| TGTCATAGTTCGGATCATTG+GGG | - | chr6.3:33408123-33408142 | None:intergenic | 40.0% | |
| TGTGAATGTCATTGTACAGG+TGG | + | chr6.3:33408037-33408056 | MS.gene08021:intron | 40.0% | |
| TGTTTCTTCAAAAATGCCGG+TGG | - | chr6.3:33408793-33408812 | None:intergenic | 40.0% | |
| TTGAAAGAAGCAGCTGATGA+AGG | + | chr6.3:33409123-33409142 | MS.gene08021:CDS | 40.0% | |
| TTGCTAAAAGCAAGACTTGC+TGG | + | chr6.3:33409771-33409790 | MS.gene08021:CDS | 40.0% | |
| TTGGAGGAATATGAATCTGG+TGG | + | chr6.3:33409882-33409901 | MS.gene08021:CDS | 40.0% | |
| TTGGGAGAAGAAAGTTGCAA+AGG | - | chr6.3:33407127-33407146 | None:intergenic | 40.0% | |
| ! | AGCTCTTGATGATTTGGCTT+TGG | + | chr6.3:33410097-33410116 | MS.gene08021:CDS | 40.0% |
| ! | GCAAACTGATTCTTAGCATC+AGG | - | chr6.3:33410128-33410147 | None:intergenic | 40.0% |
| ! | TGGAAGCAAAGTGCTTCAAA+TGG | + | chr6.3:33409740-33409759 | MS.gene08021:CDS | 40.0% |
| ! | TGTCATTGTACAGGTGGTTT+TGG | + | chr6.3:33408043-33408062 | MS.gene08021:intron | 40.0% |
| ! | TTGAAGCACTTTGCTTCCAA+TGG | - | chr6.3:33409739-33409758 | None:intergenic | 40.0% |
| !! | ATCAGCCGATTCGACTAATT+TGG | - | chr6.3:33408692-33408711 | None:intergenic | 40.0% |
| AACGATGGACGTCCAAAGAA+AGG | + | chr6.3:33407223-33407242 | MS.gene08021:CDS | 45.0% | |
| AATCTTGAGATGTTGGGGTG+GGG | + | chr6.3:33409800-33409819 | MS.gene08021:CDS | 45.0% | |
| ACCTCAGTGCTGTCATAGTT+CGG | - | chr6.3:33408133-33408152 | None:intergenic | 45.0% | |
| AGAATCTTGAGATGTTGGGG+TGG | + | chr6.3:33409798-33409817 | MS.gene08021:CDS | 45.0% | |
| AGTCGAATCGGCTGATGATT+TGG | + | chr6.3:33408696-33408715 | MS.gene08021:CDS | 45.0% | |
| ATGAAGCTCGAGATGCTCTT+TGG | - | chr6.3:33407065-33407084 | None:intergenic | 45.0% | |
| ATTCTGCTATGCAACGTGTG+TGG | - | chr6.3:33408249-33408268 | None:intergenic | 45.0% | |
| CAACTGCAGCCATGATATCA+AGG | + | chr6.3:33407489-33407508 | MS.gene08021:intron | 45.0% | |
| CATGACTCATGACATACACC+AGG | + | chr6.3:33407640-33407659 | MS.gene08021:intron | 45.0% | |
| CCAACATCTTCGAGATGTTG+CGG | - | chr6.3:33409693-33409712 | None:intergenic | 45.0% | |
| CTTTGCCACAGATGATGTTG+TGG | + | chr6.3:33408492-33408511 | MS.gene08021:CDS | 45.0% | |
| GAATCTTGAGATGTTGGGGT+GGG | + | chr6.3:33409799-33409818 | MS.gene08021:CDS | 45.0% | |
| GCGAGATCTTCAACAACTAC+AGG | - | chr6.3:33409630-33409649 | None:intergenic | 45.0% | |
| GCTAGAATATCAACCGTGTC+CGG | - | chr6.3:33408733-33408752 | None:intergenic | 45.0% | |
| GCTGTCATAGTTCGGATCAT+TGG | - | chr6.3:33408125-33408144 | None:intergenic | 45.0% | |
| TCGATGATTTCCGCGTGTAA+AGG | - | chr6.3:33408889-33408908 | None:intergenic | 45.0% | |
| TCTAACAGCACCTTTACACG+CGG | + | chr6.3:33408876-33408895 | MS.gene08021:CDS | 45.0% | |
| TGGAAGTAGCAAACCAGGAT+GGG | + | chr6.3:33409824-33409843 | MS.gene08021:CDS | 45.0% | |
| TGTTGCCACAACATCATCTG+TGG | - | chr6.3:33408500-33408519 | None:intergenic | 45.0% | |
| TTTCTTCTCCCAAGTCTCCA+AGG | + | chr6.3:33407134-33407153 | MS.gene08021:CDS | 45.0% | |
| TTTGGAGACCTTGGAGACTT+GGG | - | chr6.3:33407145-33407164 | None:intergenic | 45.0% | |
| ! | ATATTTTGTGGCAGCCGTAG+TGG | - | chr6.3:33407304-33407323 | None:intergenic | 45.0% |
| ! | GCTTTTCATAGCTAGAGCTG+TGG | + | chr6.3:33408753-33408772 | MS.gene08021:CDS | 45.0% |
| !! | CAGTTGATGATGTGAAGGCA+AGG | + | chr6.3:33408938-33408957 | MS.gene08021:CDS | 45.0% |
| !!! | ACAGGTGGTTTTGGTGGTAA+AGG | + | chr6.3:33408052-33408071 | MS.gene08021:intron | 45.0% |
| !!! | CATTGTACAGGTGGTTTTGG+TGG | + | chr6.3:33408046-33408065 | MS.gene08021:intron | 45.0% |
| !!! | TTTTGGTGGTAAAGGCACCT+GGG | + | chr6.3:33408060-33408079 | MS.gene08021:CDS | 45.0% |
| ACATAACCAACCATCGGACG+CGG | - | chr6.3:33409265-33409284 | None:intergenic | 50.0% | |
| ATCTTGAGATGTTGGGGTGG+GGG | + | chr6.3:33409801-33409820 | MS.gene08021:CDS | 50.0% | |
| CAAGTCTCCAAGGTCTCCAA+AGG | + | chr6.3:33407144-33407163 | MS.gene08021:CDS | 50.0% | |
| CCGCAACATCTCGAAGATGT+TGG | + | chr6.3:33409690-33409709 | MS.gene08021:CDS | 50.0% | |
| CGATCCGCGATTGACATTAC+TGG | + | chr6.3:33408298-33408317 | MS.gene08021:intron | 50.0% | |
| GATGGACGTCCAAAGAAAGG+TGG | + | chr6.3:33407226-33407245 | MS.gene08021:intron | 50.0% | |
| GCGGTCTACTACTGCAATTG+AGG | + | chr6.3:33407354-33407373 | MS.gene08021:intron | 50.0% | |
| GGCGATGGAAAAACGACAAG+CGG | + | chr6.3:33409080-33409099 | MS.gene08021:CDS | 50.0% | |
| GGTCGTAGATATACCGGACA+CGG | + | chr6.3:33408717-33408736 | MS.gene08021:CDS | 50.0% | |
| GGTTGACGACATTCTTCCAC+CGG | + | chr6.3:33408774-33408793 | MS.gene08021:CDS | 50.0% | |
| GTGGAAGTAGCAAACCAGGA+TGG | + | chr6.3:33409823-33409842 | MS.gene08021:CDS | 50.0% | |
| TACACGCGGAAATCATCGAG+CGG | + | chr6.3:33408890-33408909 | MS.gene08021:CDS | 50.0% | |
| TCCGAACTATGACAGCACTG+AGG | + | chr6.3:33408129-33408148 | MS.gene08021:CDS | 50.0% | |
| ! | CTTTGGAGACCTTGGAGACT+TGG | - | chr6.3:33407146-33407165 | None:intergenic | 50.0% |
| ! | TCTCCAAAGGCGCAAGTCAA+CGG | + | chr6.3:33407157-33407176 | MS.gene08021:CDS | 50.0% |
| ! | TGAAGTATTCCGCGTGCGTT+CGG | - | chr6.3:33409225-33409244 | None:intergenic | 50.0% |
| !! | TTTGGTGGTAAAGGCACCTG+GGG | + | chr6.3:33408061-33408080 | MS.gene08021:CDS | 50.0% |
| !!! | GTTTTGGTGGTAAAGGCACC+TGG | + | chr6.3:33408059-33408078 | MS.gene08021:CDS | 50.0% |
| CCACCCGATGATGTTGTGAG+TGG | + | chr6.3:33409558-33409577 | MS.gene08021:CDS | 55.0% | |
| CCACTCACAACATCATCGGG+TGG | - | chr6.3:33409561-33409580 | None:intergenic | 55.0% | |
| CTCGATATACCGAACGCACG+CGG | + | chr6.3:33409213-33409232 | MS.gene08021:CDS | 55.0% | |
| GGCTAATGCGGCCGCAATTA+AGG | - | chr6.3:33407423-33407442 | None:intergenic | 55.0% | |
| TGTCTCAAGCAATCCACCCC+AGG | - | chr6.3:33408080-33408099 | None:intergenic | 55.0% | |
| ! | ACTTGCGCCTTTGGAGACCT+TGG | - | chr6.3:33407154-33407173 | None:intergenic | 55.0% |
| !! | CTTCCGTTGACTTGCGCCTT+TGG | - | chr6.3:33407163-33407182 | None:intergenic | 55.0% |
| ATGTCGAAAGCCGCGTCCGA+TGG | + | chr6.3:33409252-33409271 | MS.gene08021:CDS | 60.0% | |
| GAAATCATCGAGCGGCGCTG+GGG | + | chr6.3:33408898-33408917 | MS.gene08021:CDS | 60.0% | |
| GGAAATCATCGAGCGGCGCT+GGG | + | chr6.3:33408897-33408916 | MS.gene08021:CDS | 60.0% | |
| GGGGGTGGAAGTAGCAAACC+AGG | + | chr6.3:33409819-33409838 | MS.gene08021:CDS | 60.0% | |
| TTGAGATGTTGGGGTGGGGG+TGG | + | chr6.3:33409804-33409823 | MS.gene08021:CDS | 60.0% | |
| CGAAAGCCGCGTCCGATGGT+TGG | + | chr6.3:33409256-33409275 | MS.gene08021:CDS | 65.0% | |
| CGGAAATCATCGAGCGGCGC+TGG | + | chr6.3:33408896-33408915 | MS.gene08021:CDS | 65.0% | |
| !! | GGTGGTAAAGGCACCTGGGG+TGG | + | chr6.3:33408064-33408083 | MS.gene08021:CDS | 65.0% |
| ! | ATCATCGAGCGGCGCTGGGG+AGG | + | chr6.3:33408901-33408920 | MS.gene08021:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 33407037 | 33410232 | 33407037 | ID=MS.gene08021 |
| chr6.3 | mRNA | 33407037 | 33410232 | 33407037 | ID=MS.gene08021.t1;Parent=MS.gene08021 |
| chr6.3 | exon | 33407037 | 33407244 | 33407037 | ID=MS.gene08021.t1.exon1;Parent=MS.gene08021.t1 |
| chr6.3 | CDS | 33407037 | 33407244 | 33407037 | ID=cds.MS.gene08021.t1;Parent=MS.gene08021.t1 |
| chr6.3 | exon | 33408056 | 33408150 | 33408056 | ID=MS.gene08021.t1.exon2;Parent=MS.gene08021.t1 |
| chr6.3 | CDS | 33408056 | 33408150 | 33408056 | ID=cds.MS.gene08021.t1;Parent=MS.gene08021.t1 |
| chr6.3 | exon | 33408409 | 33410232 | 33408409 | ID=MS.gene08021.t1.exon3;Parent=MS.gene08021.t1 |
| chr6.3 | CDS | 33408409 | 33410232 | 33408409 | ID=cds.MS.gene08021.t1;Parent=MS.gene08021.t1 |
| Gene Sequence |
| Protein sequence |
