Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08079.t1 | AES70718.2 | 97.3 | 329 | 9 | 0 | 1 | 329 | 21 | 349 | 2.40E-164 | 588.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08079.t1 | Q9LXV5 | 53.8 | 273 | 116 | 8 | 1 | 268 | 1 | 268 | 4.7e-60 | 233.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08079.t1 | G7IYA5 | 97.3 | 329 | 9 | 0 | 1 | 329 | 1 | 329 | 1.7e-164 | 588.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08079.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene08079 | -0.821502 | 3.90E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene08079 | -0.809006 | 2.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08079.t1 | MTR_3g061510 | 98.784 | 329 | 4 | 0 | 1 | 329 | 1 | 329 | 0.0 | 666 |
| MS.gene08079.t1 | MTR_3g061510 | 98.784 | 329 | 4 | 0 | 1 | 329 | 21 | 349 | 0.0 | 665 |
| MS.gene08079.t1 | MTR_8g037270 | 46.445 | 211 | 87 | 7 | 20 | 226 | 21 | 209 | 1.71e-46 | 159 |
| MS.gene08079.t1 | MTR_2g041090 | 60.577 | 104 | 36 | 3 | 128 | 226 | 30 | 133 | 1.57e-35 | 129 |
| MS.gene08079.t1 | MTR_2g030170 | 56.731 | 104 | 40 | 1 | 144 | 242 | 81 | 184 | 2.03e-32 | 120 |
| MS.gene08079.t1 | MTR_8g019540 | 54.717 | 106 | 44 | 2 | 124 | 226 | 116 | 220 | 3.61e-32 | 122 |
| MS.gene08079.t1 | MTR_2g099490 | 54.545 | 121 | 50 | 3 | 112 | 229 | 114 | 232 | 2.14e-31 | 120 |
| MS.gene08079.t1 | MTR_2g030170 | 59.551 | 89 | 36 | 0 | 154 | 242 | 129 | 217 | 1.06e-30 | 116 |
| MS.gene08079.t1 | MTR_7g106450 | 41.579 | 190 | 88 | 8 | 104 | 285 | 106 | 280 | 2.62e-30 | 117 |
| MS.gene08079.t1 | MTR_2g099490 | 48.889 | 135 | 52 | 3 | 112 | 229 | 114 | 248 | 3.18e-29 | 115 |
| MS.gene08079.t1 | MTR_1g056530 | 50.427 | 117 | 44 | 4 | 124 | 237 | 126 | 231 | 1.55e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08079.t1 | AT5G12840 | 55.859 | 256 | 105 | 6 | 16 | 268 | 17 | 267 | 9.44e-86 | 259 |
| MS.gene08079.t1 | AT5G12840 | 55.859 | 256 | 105 | 6 | 16 | 268 | 17 | 267 | 9.44e-86 | 259 |
| MS.gene08079.t1 | AT5G12840 | 55.642 | 257 | 105 | 7 | 16 | 268 | 17 | 268 | 5.93e-84 | 255 |
| MS.gene08079.t1 | AT5G12840 | 55.642 | 257 | 105 | 7 | 16 | 268 | 17 | 268 | 5.93e-84 | 255 |
| MS.gene08079.t1 | AT5G12840 | 55.642 | 257 | 105 | 7 | 16 | 268 | 17 | 268 | 5.93e-84 | 255 |
| MS.gene08079.t1 | AT3G20910 | 59.361 | 219 | 59 | 7 | 116 | 329 | 110 | 303 | 5.09e-74 | 231 |
| MS.gene08079.t1 | AT1G30500 | 59.091 | 110 | 40 | 3 | 124 | 231 | 52 | 158 | 3.08e-33 | 121 |
| MS.gene08079.t1 | AT1G30500 | 56.757 | 111 | 45 | 2 | 124 | 231 | 52 | 162 | 3.84e-32 | 119 |
| MS.gene08079.t1 | AT1G72830 | 57.143 | 98 | 39 | 2 | 132 | 226 | 137 | 234 | 3.92e-31 | 120 |
| MS.gene08079.t1 | AT2G34720 | 45.714 | 140 | 70 | 2 | 125 | 258 | 48 | 187 | 5.63e-31 | 116 |
| MS.gene08079.t1 | AT2G34720 | 47.015 | 134 | 65 | 2 | 131 | 258 | 19 | 152 | 4.91e-30 | 112 |
| MS.gene08079.t1 | AT2G34720 | 47.015 | 134 | 65 | 2 | 131 | 258 | 19 | 152 | 4.91e-30 | 112 |
| MS.gene08079.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 132 | 226 | 135 | 227 | 7.93e-30 | 116 |
| MS.gene08079.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 132 | 226 | 135 | 227 | 7.93e-30 | 116 |
| MS.gene08079.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 132 | 226 | 135 | 227 | 7.93e-30 | 116 |
| MS.gene08079.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 132 | 226 | 135 | 227 | 7.93e-30 | 116 |
| MS.gene08079.t1 | AT1G72830 | 56.566 | 99 | 39 | 3 | 132 | 226 | 137 | 235 | 1.90e-29 | 115 |
| MS.gene08079.t1 | AT1G54160 | 43.066 | 137 | 68 | 3 | 95 | 226 | 102 | 233 | 8.56e-29 | 113 |
| MS.gene08079.t1 | AT3G14020 | 54.167 | 96 | 39 | 3 | 135 | 226 | 132 | 226 | 6.31e-27 | 108 |
| MS.gene08079.t1 | AT3G14020 | 54.167 | 96 | 39 | 3 | 135 | 226 | 132 | 226 | 6.31e-27 | 108 |
| MS.gene08079.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 9.25e-22 | 93.2 |
| MS.gene08079.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 9.25e-22 | 93.2 |
| MS.gene08079.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 9.25e-22 | 93.2 |
| MS.gene08079.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 9.25e-22 | 93.2 |
| MS.gene08079.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 130 | 235 | 5 | 100 | 1.23e-21 | 90.5 |
| MS.gene08079.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 130 | 235 | 5 | 100 | 1.23e-21 | 90.5 |
| MS.gene08079.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 130 | 235 | 51 | 146 | 5.51e-21 | 90.1 |
| MS.gene08079.t1 | AT3G05690 | 44.928 | 138 | 55 | 6 | 114 | 242 | 88 | 213 | 8.15e-21 | 91.3 |
| MS.gene08079.t1 | AT3G05690 | 34.468 | 235 | 110 | 11 | 22 | 242 | 46 | 250 | 1.46e-20 | 91.3 |
| MS.gene08079.t1 | AT1G72830 | 48.421 | 95 | 27 | 2 | 132 | 226 | 137 | 209 | 6.65e-19 | 86.3 |
Find 106 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATCAGGATCCATATTA+TGG | 0.185298 | 3.3:-49399693 | MS.gene08079:CDS |
| CCTCGGTTGATTTGCAGTTT+CGG | 0.272870 | 3.3:+49400457 | None:intergenic |
| TTCCTCATTCATCTCACTAT+TGG | 0.285307 | 3.3:+49400274 | None:intergenic |
| CATGCAATCTTCAAGGTATC+AGG | 0.308064 | 3.3:-49398298 | MS.gene08079:CDS |
| TTGATTTGCAGTTTCGGACT+TGG | 0.313960 | 3.3:+49400463 | None:intergenic |
| CTCAAGGGGCAAAGGCATTC+TGG | 0.314340 | 3.3:+49399485 | None:intergenic |
| GTGGAAGAAGGGGACTGTTC+AGG | 0.315135 | 3.3:-49398267 | MS.gene08079:CDS |
| GCATGAGGCACTCCTATAAA+AGG | 0.333358 | 3.3:+49399507 | None:intergenic |
| CCAGACATTGTTTGCGCTAC+AGG | 0.346287 | 3.3:+49400365 | None:intergenic |
| TGTTTAGCGTTCACATAAAC+AGG | 0.347626 | 3.3:+49399450 | None:intergenic |
| CAAAGACTGGCCTTCCTCAT+TGG | 0.355087 | 3.3:+49400298 | None:intergenic |
| TCGCATGTTGGGAGAATTCC+AGG | 0.360834 | 3.3:+49398380 | None:intergenic |
| GCAAGAGGATCAAACGAAAA+TGG | 0.361215 | 3.3:-49398351 | MS.gene08079:CDS |
| TACTAAAGCACCTGATTGAT+TGG | 0.366090 | 3.3:+49400214 | None:intergenic |
| TTCTTCTTGATAGGAAATTA+CGG | 0.368800 | 3.3:-49400058 | MS.gene08079:intron |
| GCATGCCATTGTTGTTGTTA+TGG | 0.372368 | 3.3:+49398316 | None:intergenic |
| ATGTGCTACAAATCCTTATC+AGG | 0.378434 | 3.3:-49399706 | MS.gene08079:CDS |
| CTTGCATCTTGTCGCATGTT+GGG | 0.394811 | 3.3:+49398369 | None:intergenic |
| CTTATCAGGATCCATATTAT+GGG | 0.407754 | 3.3:-49399692 | MS.gene08079:CDS |
| TCGCAATCAATTAGTTCATC+TGG | 0.408092 | 3.3:-49398435 | MS.gene08079:CDS |
| GAAAACTGATGGTGAGGCCT+CGG | 0.419006 | 3.3:-49398490 | MS.gene08079:CDS |
| GAGGCCTCGGGAAAGGATAA+TGG | 0.429841 | 3.3:-49398477 | MS.gene08079:CDS |
| CCTGTAGCGCAAACAATGTC+TGG | 0.435636 | 3.3:-49400365 | MS.gene08079:CDS |
| ACAATCAAGAGAGGATGAAT+TGG | 0.445592 | 3.3:+49400340 | None:intergenic |
| TCCTCTCTTGATTGTCCCAA+TGG | 0.445841 | 3.3:-49400332 | MS.gene08079:CDS |
| TGTCTAGATTCATGAAGATA+TGG | 0.448950 | 3.3:+49398561 | None:intergenic |
| CCATAATATGGATCCTGATA+AGG | 0.451848 | 3.3:+49399693 | None:intergenic |
| CTTCAGACTCTGCGGAAACC+TGG | 0.454407 | 3.3:-49398398 | MS.gene08079:CDS |
| CCTCTGCGATGCCTCGTTCG+AGG | 0.460703 | 3.3:+49398224 | None:intergenic |
| TCTTGCATCTTGTCGCATGT+TGG | 0.462937 | 3.3:+49398368 | None:intergenic |
| TGATTTGCAGTTTCGGACTT+GGG | 0.466356 | 3.3:+49400464 | None:intergenic |
| TGGAAGAAGGGGACTGTTCA+GGG | 0.467131 | 3.3:-49398266 | MS.gene08079:CDS |
| TTGAGAAGGGCAAGAGGCAC+CGG | 0.467176 | 3.3:-49398528 | MS.gene08079:CDS |
| CCTGCTGCTCCCAATCAATC+AGG | 0.469165 | 3.3:-49400224 | MS.gene08079:intron |
| CCTGATTGATTGGGAGCAGC+AGG | 0.471231 | 3.3:+49400224 | None:intergenic |
| AATGCCTTTGCCCCTTGAGA+TGG | 0.476507 | 3.3:-49399481 | MS.gene08079:CDS |
| GTCTTCGCCTCAGAATTCCT+TGG | 0.480874 | 3.3:+49399424 | None:intergenic |
| ATTGATTGCGACGACAAGAC+TGG | 0.480972 | 3.3:+49398447 | None:intergenic |
| ACTCCTCAGCTGGAACTTGT+TGG | 0.498120 | 3.3:-49399971 | MS.gene08079:CDS |
| TCGGGAAAGGATAATGGCTC+TGG | 0.498937 | 3.3:-49398471 | MS.gene08079:CDS |
| ATTGGATTCTGAATCACCAT+TGG | 0.502864 | 3.3:+49400316 | None:intergenic |
| CAGGGTGAAAGAGTGGAAGA+AGG | 0.503255 | 3.3:-49398279 | MS.gene08079:CDS |
| TTGGATTCTGAATCACCATT+GGG | 0.505994 | 3.3:+49400317 | None:intergenic |
| ACTAAAGCACCTGATTGATT+GGG | 0.506570 | 3.3:+49400215 | None:intergenic |
| ACAATGGCATGCAATCTTCA+AGG | 0.506878 | 3.3:-49398305 | MS.gene08079:CDS |
| TTTCTTTGCAAATCGTCCTC+CGG | 0.509061 | 3.3:+49398509 | None:intergenic |
| AAAACTGATGGTGAGGCCTC+GGG | 0.514204 | 3.3:-49398489 | MS.gene08079:CDS |
| GAACCTTGGTGGCGTGGTGT+TGG | 0.516801 | 3.3:-49400395 | MS.gene08079:CDS |
| CCTCACACAGACTCCTCAGC+TGG | 0.517659 | 3.3:-49399981 | MS.gene08079:CDS |
| GCCATTGTTGTTGTTATGGT+AGG | 0.518190 | 3.3:+49398320 | None:intergenic |
| GAAGCTCATAAAATCTAGAA+AGG | 0.519482 | 3.3:-49399373 | MS.gene08079:intron |
| GTGCTAAAGCAGAGCTTGAA+AGG | 0.520912 | 3.3:-49399395 | MS.gene08079:CDS |
| AGGGTGAAAGAGTGGAAGAA+GGG | 0.525419 | 3.3:-49398278 | MS.gene08079:CDS |
| TGATGGTGAGGCCTCGGGAA+AGG | 0.531610 | 3.3:-49398484 | MS.gene08079:CDS |
| GTGGTGTTTATTCTGAACCT+TGG | 0.535143 | 3.3:-49400409 | MS.gene08079:CDS |
| CAGGTTCTTGAGCCATCTCA+AGG | 0.541180 | 3.3:+49399469 | None:intergenic |
| AGCTTATCCTCACCAGCCGT+TGG | 0.544838 | 3.3:-49399658 | MS.gene08079:intron |
| TCTCACTATTGGACAAAGAC+TGG | 0.550556 | 3.3:+49400285 | None:intergenic |
| GACATCAGCATGCTTTGAGA+AGG | 0.559068 | 3.3:-49398542 | MS.gene08079:CDS |
| TGAGCCATCTCAAGGGGCAA+AGG | 0.560137 | 3.3:+49399477 | None:intergenic |
| CAGGTTTCCGCAGAGTCTGA+AGG | 0.567519 | 3.3:+49398399 | None:intergenic |
| GATCCTCATTCCTTTCAGCC+CGG | 0.568473 | 3.3:-49400431 | MS.gene08079:CDS |
| ATAAACACCACCGGGCTGAA+AGG | 0.570819 | 3.3:+49400421 | None:intergenic |
| TCACATACCAACGGCTGGTG+AGG | 0.579630 | 3.3:+49399651 | None:intergenic |
| AAGGTATCAGGGTGAAAGAG+TGG | 0.579884 | 3.3:-49398286 | MS.gene08079:CDS |
| GTGTTTATTCTGAACCTTGG+TGG | 0.581264 | 3.3:-49400406 | MS.gene08079:CDS |
| AGGTTCAGAATAAACACCAC+CGG | 0.582494 | 3.3:+49400412 | None:intergenic |
| GGAAGATGATGATGCTGCTA+AGG | 0.583652 | 3.3:-49400255 | MS.gene08079:CDS |
| TAATGTCACATACCAACGGC+TGG | 0.588332 | 3.3:+49399646 | None:intergenic |
| TATTCTGAACCTTGGTGGCG+TGG | 0.589853 | 3.3:-49400401 | MS.gene08079:CDS |
| TGCAAAGAAAACTGATGGTG+AGG | 0.591393 | 3.3:-49398496 | MS.gene08079:CDS |
| GGATCAAACGAAAATGGTGG+TGG | 0.592838 | 3.3:-49398345 | MS.gene08079:CDS |
| ATGCAATCTTCAAGGTATCA+GGG | 0.599536 | 3.3:-49398297 | MS.gene08079:CDS |
| GGAAATTACGGACAAGAACA+AGG | 0.600249 | 3.3:-49400046 | MS.gene08079:CDS |
| TTATCAGGATCCATATTATG+GGG | 0.600718 | 3.3:-49399691 | MS.gene08079:CDS |
| AGGTTCTTGAGCCATCTCAA+GGG | 0.605218 | 3.3:+49399470 | None:intergenic |
| CCTCATTCCTTTCAGCCCGG+TGG | 0.605967 | 3.3:-49400428 | MS.gene08079:CDS |
| CATGCTTTGAGAAGGGCAAG+AGG | 0.607747 | 3.3:-49398534 | MS.gene08079:CDS |
| GGTTCTTGAGCCATCTCAAG+GGG | 0.609159 | 3.3:+49399471 | None:intergenic |
| GTCCAATAGTGAGATGAATG+AGG | 0.611764 | 3.3:-49400276 | MS.gene08079:CDS |
| GATTCAGAATCCAATGAGGA+AGG | 0.616324 | 3.3:-49400308 | MS.gene08079:CDS |
| ACATCAGCATGCTTTGAGAA+GGG | 0.618856 | 3.3:-49398541 | MS.gene08079:CDS |
| GACTGTTCAGGGCAGCTACG+TGG | 0.623934 | 3.3:-49398255 | MS.gene08079:CDS |
| CGATTTGCAAAGAAAACTGA+TGG | 0.624607 | 3.3:-49398501 | MS.gene08079:CDS |
| CCACCGGGCTGAAAGGAATG+AGG | 0.626610 | 3.3:+49400428 | None:intergenic |
| TCCTACCATAACAACAACAA+TGG | 0.632034 | 3.3:-49398321 | MS.gene08079:CDS |
| GGCAAAGGCATTCTGGCATG+AGG | 0.634023 | 3.3:+49399492 | None:intergenic |
| AGAAGGGCAAGAGGCACCGG+AGG | 0.637214 | 3.3:-49398525 | MS.gene08079:CDS |
| GGGTGAAAGAGTGGAAGAAG+GGG | 0.642943 | 3.3:-49398277 | MS.gene08079:CDS |
| CCAGCTGAGGAGTCTGTGTG+AGG | 0.649225 | 3.3:+49399981 | None:intergenic |
| GGTTCAGAATAAACACCACC+GGG | 0.650774 | 3.3:+49400413 | None:intergenic |
| AACAATACCAAGGAATTCTG+AGG | 0.651910 | 3.3:-49399431 | MS.gene08079:CDS |
| AGAGCCATTATCCTTTCCCG+AGG | 0.653284 | 3.3:+49398473 | None:intergenic |
| ACCATTGGGACAATCAAGAG+AGG | 0.663692 | 3.3:+49400331 | None:intergenic |
| TGAGGCACTCCTATAAAAGG+AGG | 0.667807 | 3.3:+49399510 | None:intergenic |
| TGGAAGCATCTCCTCGAACG+AGG | 0.669556 | 3.3:-49398235 | MS.gene08079:CDS |
| AAGGAATGAGGATCTGACCT+CGG | 0.671701 | 3.3:+49400440 | None:intergenic |
| TGACCAACAAGTTCCAGCTG+AGG | 0.675734 | 3.3:+49399968 | None:intergenic |
| TATCAGGATCCATATTATGG+GGG | 0.690554 | 3.3:-49399690 | MS.gene08079:CDS |
| AGAGGATCAAACGAAAATGG+TGG | 0.692972 | 3.3:-49398348 | MS.gene08079:CDS |
| GTGAACGCTAAACAATACCA+AGG | 0.697540 | 3.3:-49399441 | MS.gene08079:CDS |
| AACATGCGACAAGATGCAAG+AGG | 0.706089 | 3.3:-49398366 | MS.gene08079:CDS |
| TATCCAACACCACGCCACCA+AGG | 0.707510 | 3.3:+49400392 | None:intergenic |
| TGGTGATTCAGAATCCAATG+AGG | 0.715370 | 3.3:-49400312 | MS.gene08079:CDS |
| CCTCGAACGAGGCATCGCAG+AGG | 0.718093 | 3.3:-49398224 | MS.gene08079:CDS |
| CCGAAACTGCAAATCAACCG+AGG | 0.722272 | 3.3:-49400457 | MS.gene08079:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATAGTAAAAAAAAAATA+TGG | + | chr3.3:49399140-49399159 | None:intergenic | 10.0% |
| !! | TATTTACTAACAATTAAATA+GGG | - | chr3.3:49398496-49398515 | MS.gene08079:CDS | 10.0% |
| !! | TTATTTACTAACAATTAAAT+AGG | - | chr3.3:49398495-49398514 | MS.gene08079:CDS | 10.0% |
| !!! | CATATTTTTTTTTTACTATT+AGG | - | chr3.3:49399138-49399157 | MS.gene08079:intron | 10.0% |
| !!! | CATTTTTTTTTTTTTTTTGA+AGG | + | chr3.3:49399689-49399708 | None:intergenic | 10.0% |
| !!! | TATAAATGTTTCTAATATAT+AGG | - | chr3.3:49399539-49399558 | MS.gene08079:intron | 10.0% |
| !! | AAAAAATAACAATAAAGCTT+AGG | + | chr3.3:49398752-49398771 | None:intergenic | 15.0% |
| !! | ATTTACTAACAATTAAATAG+GGG | - | chr3.3:49398497-49398516 | MS.gene08079:CDS | 15.0% |
| !!! | TATTTTTTTTTCTTCTTGAT+AGG | - | chr3.3:49398609-49398628 | MS.gene08079:intron | 15.0% |
| !! | ATCAAGAAAATAGAACAAAA+TGG | + | chr3.3:49399082-49399101 | None:intergenic | 20.0% |
| !! | CATCTAATTTAATGTTTAGA+TGG | - | chr3.3:49399757-49399776 | MS.gene08079:intron | 20.0% |
| !! | CTGCTTAAAAAAAAAATCAA+AGG | + | chr3.3:49399579-49399598 | None:intergenic | 20.0% |
| !! | TAAAAAAACAAATATCCCAA+AGG | + | chr3.3:49399370-49399389 | None:intergenic | 20.0% |
| !! | TCTTGATTAATGGTAATATT+TGG | - | chr3.3:49399095-49399114 | MS.gene08079:intron | 20.0% |
| !!! | ACCAAATACTATTGATTTAA+AGG | - | chr3.3:49398573-49398592 | MS.gene08079:intron | 20.0% |
| !!! | TCAAATCAGTAATTTTATTC+TGG | - | chr3.3:49398822-49398841 | MS.gene08079:intron | 20.0% |
| !!! | TGTTCTATTTTCTTGATTAA+TGG | - | chr3.3:49399085-49399104 | MS.gene08079:intron | 20.0% |
| !!! | TTACTACATAAACTTTTTGT+GGG | - | chr3.3:49399936-49399955 | MS.gene08079:intron | 20.0% |
| !!! | TTGTTTTTTTATATGCAGAA+AGG | - | chr3.3:49399379-49399398 | MS.gene08079:CDS | 20.0% |
| !!! | TTTACTACATAAACTTTTTG+TGG | - | chr3.3:49399935-49399954 | MS.gene08079:intron | 20.0% |
| ! | AAAAAAAATCAAAGGCTCTA+TGG | + | chr3.3:49399571-49399590 | None:intergenic | 25.0% |
| ! | AAAAGAATTGGAAGAATACT+AGG | + | chr3.3:49398941-49398960 | None:intergenic | 25.0% |
| ! | ATTCGTGCATATAATTTCAA+TGG | - | chr3.3:49398862-49398881 | MS.gene08079:intron | 25.0% |
| ! | GCCTTTAAATCAATAGTATT+TGG | + | chr3.3:49398577-49398596 | None:intergenic | 25.0% |
| ! | TTCTTCTTGATAGGAAATTA+CGG | - | chr3.3:49398618-49398637 | MS.gene08079:intron | 25.0% |
| !! | ATGATATTTTCCTTTCCTTT+GGG | - | chr3.3:49399352-49399371 | MS.gene08079:intron | 25.0% |
| !! | TATGATATTTTCCTTTCCTT+TGG | - | chr3.3:49399351-49399370 | MS.gene08079:intron | 25.0% |
| AAACAAATATCCCAAAGGAA+AGG | + | chr3.3:49399365-49399384 | None:intergenic | 30.0% | |
| AGATTAATGTCACATACCAA+CGG | + | chr3.3:49399037-49399056 | None:intergenic | 30.0% | |
| CCATTATTATGCTGTATTGA+CGG | - | chr3.3:49399614-49399633 | MS.gene08079:intron | 30.0% | |
| CTTAACAACTTGAAAGCAAT+TGG | + | chr3.3:49398782-49398801 | None:intergenic | 30.0% | |
| CTTATCAGGATCCATATTAT+GGG | - | chr3.3:49398984-49399003 | MS.gene08079:intron | 30.0% | |
| GAAGCTCATAAAATCTAGAA+AGG | - | chr3.3:49399303-49399322 | MS.gene08079:intron | 30.0% | |
| GTCGTATGAAATTGTGTAAA+AGG | + | chr3.3:49399415-49399434 | None:intergenic | 30.0% | |
| TAACAATAAAGCTTAGGCAA+AGG | + | chr3.3:49398746-49398765 | None:intergenic | 30.0% | |
| TAGGGGAAAAATAAACAGAT+TGG | - | chr3.3:49398514-49398533 | MS.gene08079:CDS | 30.0% | |
| TGCACAAATGTCAAGAAAAA+TGG | - | chr3.3:49399885-49399904 | MS.gene08079:intron | 30.0% | |
| TGTCTAGATTCATGAAGATA+TGG | + | chr3.3:49400118-49400137 | None:intergenic | 30.0% | |
| TTATCAGGATCCATATTATG+GGG | - | chr3.3:49398985-49399004 | MS.gene08079:intron | 30.0% | |
| ! | ACAGTTGCTTAGTCTTTATA+TGG | - | chr3.3:49399433-49399452 | MS.gene08079:CDS | 30.0% |
| ! | TTAATCTGTTACTTGCTTCA+AGG | - | chr3.3:49399050-49399069 | MS.gene08079:intron | 30.0% |
| ! | TTGTTGCTTGTTTCAAAAGT+GGG | + | chr3.3:49399737-49399756 | None:intergenic | 30.0% |
| AAAAATAAGCTCTCAGATGC+AGG | - | chr3.3:49399842-49399861 | MS.gene08079:intron | 35.0% | |
| AACAATACCAAGGAATTCTG+AGG | - | chr3.3:49399245-49399264 | MS.gene08079:intron | 35.0% | |
| ACAATCAAGAGAGGATGAAT+TGG | + | chr3.3:49398339-49398358 | None:intergenic | 35.0% | |
| ACTACATACACTGGCAAAAT+TGG | + | chr3.3:49399969-49399988 | None:intergenic | 35.0% | |
| ATGAATGTGACTACATACAC+TGG | + | chr3.3:49399978-49399997 | None:intergenic | 35.0% | |
| ATGTGCTACAAATCCTTATC+AGG | - | chr3.3:49398970-49398989 | MS.gene08079:intron | 35.0% | |
| ATTGGATTCTGAATCACCAT+TGG | + | chr3.3:49398363-49398382 | None:intergenic | 35.0% | |
| CCATAATATGGATCCTGATA+AGG | + | chr3.3:49398986-49399005 | None:intergenic | 35.0% | |
| CCGTCAATACAGCATAATAA+TGG | + | chr3.3:49399617-49399636 | None:intergenic | 35.0% | |
| CCTTATCAGGATCCATATTA+TGG | - | chr3.3:49398983-49399002 | MS.gene08079:intron | 35.0% | |
| CGATTTGCAAAGAAAACTGA+TGG | - | chr3.3:49400175-49400194 | MS.gene08079:intron | 35.0% | |
| GGACTCATGCAAGTAAAAAA+TGG | + | chr3.3:49400043-49400062 | None:intergenic | 35.0% | |
| GTCTCACTTGAAACATATTC+TGG | + | chr3.3:49400064-49400083 | None:intergenic | 35.0% | |
| TATCAGGATCCATATTATGG+GGG | - | chr3.3:49398986-49399005 | MS.gene08079:intron | 35.0% | |
| TATCCTTGTCTGCAAGAATT+AGG | - | chr3.3:49399814-49399833 | MS.gene08079:intron | 35.0% | |
| TCCTACCATAACAACAACAA+TGG | - | chr3.3:49400355-49400374 | MS.gene08079:CDS | 35.0% | |
| TCGCAATCAATTAGTTCATC+TGG | - | chr3.3:49400241-49400260 | MS.gene08079:CDS | 35.0% | |
| TGTTTAGCGTTCACATAAAC+AGG | + | chr3.3:49399229-49399248 | None:intergenic | 35.0% | |
| TTCCTCATTCATCTCACTAT+TGG | + | chr3.3:49398405-49398424 | None:intergenic | 35.0% | |
| TTGGATTCTGAATCACCATT+GGG | + | chr3.3:49398362-49398381 | None:intergenic | 35.0% | |
| ! | ACTAAAGCACCTGATTGATT+GGG | + | chr3.3:49398464-49398483 | None:intergenic | 35.0% |
| ! | ATGCAATCTTCAAGGTATCA+GGG | - | chr3.3:49400379-49400398 | MS.gene08079:CDS | 35.0% |
| ! | GTTGTTGCTTGTTTCAAAAG+TGG | + | chr3.3:49399738-49399757 | None:intergenic | 35.0% |
| ! | TACTAAAGCACCTGATTGAT+TGG | + | chr3.3:49398465-49398484 | None:intergenic | 35.0% |
| ! | TAGGGATATCCTCCTTTTAT+AGG | - | chr3.3:49399157-49399176 | MS.gene08079:intron | 35.0% |
| ! | TCTTCCAATTCTTTTGATGC+AGG | - | chr3.3:49398946-49398965 | MS.gene08079:intron | 35.0% |
| ACAATGGCATGCAATCTTCA+AGG | - | chr3.3:49400371-49400390 | MS.gene08079:CDS | 40.0% | |
| AGAGGATCAAACGAAAATGG+TGG | - | chr3.3:49400328-49400347 | MS.gene08079:CDS | 40.0% | |
| AGCTTGTAGTTGCATGCATT+TGG | - | chr3.3:49398902-49398921 | MS.gene08079:intron | 40.0% | |
| AGGTTCAGAATAAACACCAC+CGG | + | chr3.3:49398267-49398286 | None:intergenic | 40.0% | |
| ATACACTGGCAAAATTGGAG+TGG | + | chr3.3:49399964-49399983 | None:intergenic | 40.0% | |
| CAACCTAATTCTTGCAGACA+AGG | + | chr3.3:49399820-49399839 | None:intergenic | 40.0% | |
| CATGCCTGCATCAAAAGAAT+TGG | + | chr3.3:49398953-49398972 | None:intergenic | 40.0% | |
| GATTCAGAATCCAATGAGGA+AGG | - | chr3.3:49398368-49398387 | MS.gene08079:CDS | 40.0% | |
| GCAAGAGGATCAAACGAAAA+TGG | - | chr3.3:49400325-49400344 | MS.gene08079:CDS | 40.0% | |
| GGAAATTACGGACAAGAACA+AGG | - | chr3.3:49398630-49398649 | MS.gene08079:intron | 40.0% | |
| GTCCAATAGTGAGATGAATG+AGG | - | chr3.3:49398400-49398419 | MS.gene08079:CDS | 40.0% | |
| GTGAACGCTAAACAATACCA+AGG | - | chr3.3:49399235-49399254 | MS.gene08079:intron | 40.0% | |
| GTGGTGTTTATTCTGAACCT+TGG | - | chr3.3:49398267-49398286 | MS.gene08079:CDS | 40.0% | |
| GTGTTTATTCTGAACCTTGG+TGG | - | chr3.3:49398270-49398289 | MS.gene08079:CDS | 40.0% | |
| TATATGCGCTGTTGTCTGTA+AGG | - | chr3.3:49399510-49399529 | MS.gene08079:CDS | 40.0% | |
| TCTCACTATTGGACAAAGAC+TGG | + | chr3.3:49398394-49398413 | None:intergenic | 40.0% | |
| TGGTGATTCAGAATCCAATG+AGG | - | chr3.3:49398364-49398383 | MS.gene08079:CDS | 40.0% | |
| TGTTTAGATGGATCTGCTGT+TGG | - | chr3.3:49399769-49399788 | MS.gene08079:intron | 40.0% | |
| TTTCTTTGCAAATCGTCCTC+CGG | + | chr3.3:49400170-49400189 | None:intergenic | 40.0% | |
| ! | CATGCAATCTTCAAGGTATC+AGG | - | chr3.3:49400378-49400397 | MS.gene08079:CDS | 40.0% |
| ! | GCATGCCATTGTTGTTGTTA+TGG | + | chr3.3:49400363-49400382 | None:intergenic | 40.0% |
| ! | GCCATTGTTGTTGTTATGGT+AGG | + | chr3.3:49400359-49400378 | None:intergenic | 40.0% |
| ! | TGATTTGCAGTTTCGGACTT+GGG | + | chr3.3:49398215-49398234 | None:intergenic | 40.0% |
| ! | TGCAAAGAAAACTGATGGTG+AGG | - | chr3.3:49400180-49400199 | MS.gene08079:intron | 40.0% |
| !! | ACATCAGCATGCTTTGAGAA+GGG | - | chr3.3:49400135-49400154 | MS.gene08079:intron | 40.0% |
| !! | TTGATTTGCAGTTTCGGACT+TGG | + | chr3.3:49398216-49398235 | None:intergenic | 40.0% |
| AACATGCGACAAGATGCAAG+AGG | - | chr3.3:49400310-49400329 | MS.gene08079:CDS | 45.0% | |
| AAGGAATGAGGATCTGACCT+CGG | + | chr3.3:49398239-49398258 | None:intergenic | 45.0% | |
| ACCATTGGGACAATCAAGAG+AGG | + | chr3.3:49398348-49398367 | None:intergenic | 45.0% | |
| AGGGTGAAAGAGTGGAAGAA+GGG | - | chr3.3:49400398-49400417 | MS.gene08079:CDS | 45.0% | |
| AGGTTCTTGAGCCATCTCAA+GGG | + | chr3.3:49399209-49399228 | None:intergenic | 45.0% | |
| ATTGATTGCGACGACAAGAC+TGG | + | chr3.3:49400232-49400251 | None:intergenic | 45.0% | |
| CTTGCATCTTGTCGCATGTT+GGG | + | chr3.3:49400310-49400329 | None:intergenic | 45.0% | |
| GGATCAAACGAAAATGGTGG+TGG | - | chr3.3:49400331-49400350 | MS.gene08079:CDS | 45.0% | |
| GGTTCAGAATAAACACCACC+GGG | + | chr3.3:49398266-49398285 | None:intergenic | 45.0% | |
| GTAGTTGCATGCATTTGGAC+TGG | - | chr3.3:49398907-49398926 | MS.gene08079:intron | 45.0% | |
| GTGCTAAAGCAGAGCTTGAA+AGG | - | chr3.3:49399281-49399300 | MS.gene08079:intron | 45.0% | |
| TAATGTCACATACCAACGGC+TGG | + | chr3.3:49399033-49399052 | None:intergenic | 45.0% | |
| TCCTCTCTTGATTGTCCCAA+TGG | - | chr3.3:49398344-49398363 | MS.gene08079:CDS | 45.0% | |
| TCTTGCATCTTGTCGCATGT+TGG | + | chr3.3:49400311-49400330 | None:intergenic | 45.0% | |
| TTAGATGGATCTGCTGTTGG+AGG | - | chr3.3:49399772-49399791 | MS.gene08079:intron | 45.0% | |
| ! | AAGGTATCAGGGTGAAAGAG+TGG | - | chr3.3:49400390-49400409 | MS.gene08079:CDS | 45.0% |
| ! | ACTTTTGCCTTCAGACTCTG+CGG | - | chr3.3:49400270-49400289 | MS.gene08079:CDS | 45.0% |
| ! | GCATGAGGCACTCCTATAAA+AGG | + | chr3.3:49399172-49399191 | None:intergenic | 45.0% |
| ! | GGAAGATGATGATGCTGCTA+AGG | - | chr3.3:49398421-49398440 | MS.gene08079:CDS | 45.0% |
| ! | TCCATATTATGGGGGCATGA+TGG | - | chr3.3:49398994-49399013 | MS.gene08079:intron | 45.0% |
| ! | TGAGGCACTCCTATAAAAGG+AGG | + | chr3.3:49399169-49399188 | None:intergenic | 45.0% |
| ! | TGCATGCATTTGGACTGGAT+GGG | - | chr3.3:49398912-49398931 | MS.gene08079:intron | 45.0% |
| ! | TTGCATGCATTTGGACTGGA+TGG | - | chr3.3:49398911-49398930 | MS.gene08079:intron | 45.0% |
| !! | CCTCGGTTGATTTGCAGTTT+CGG | + | chr3.3:49398222-49398241 | None:intergenic | 45.0% |
| !! | GACATCAGCATGCTTTGAGA+AGG | - | chr3.3:49400134-49400153 | MS.gene08079:intron | 45.0% |
| !!! | ATATTTTTTTTTTACTATTA+GGG | - | chr3.3:49399139-49399158 | MS.gene08079:intron | 5.0% |
| AATGCCTTTGCCCCTTGAGA+TGG | - | chr3.3:49399195-49399214 | MS.gene08079:intron | 50.0% | |
| ACTCCTCAGCTGGAACTTGT+TGG | - | chr3.3:49398705-49398724 | MS.gene08079:intron | 50.0% | |
| AGAGCCATTATCCTTTCCCG+AGG | + | chr3.3:49400206-49400225 | None:intergenic | 50.0% | |
| ATAAACACCACCGGGCTGAA+AGG | + | chr3.3:49398258-49398277 | None:intergenic | 50.0% | |
| CAGGGTGAAAGAGTGGAAGA+AGG | - | chr3.3:49400397-49400416 | MS.gene08079:CDS | 50.0% | |
| CAGGTTCTTGAGCCATCTCA+AGG | + | chr3.3:49399210-49399229 | None:intergenic | 50.0% | |
| CCAGACATTGTTTGCGCTAC+AGG | + | chr3.3:49398314-49398333 | None:intergenic | 50.0% | |
| CCGAAACTGCAAATCAACCG+AGG | - | chr3.3:49398219-49398238 | MS.gene08079:CDS | 50.0% | |
| CCTGTAGCGCAAACAATGTC+TGG | - | chr3.3:49398311-49398330 | MS.gene08079:CDS | 50.0% | |
| GATCCTCATTCCTTTCAGCC+CGG | - | chr3.3:49398245-49398264 | MS.gene08079:CDS | 50.0% | |
| GCCATCATGCCCCCATAATA+TGG | + | chr3.3:49398998-49399017 | None:intergenic | 50.0% | |
| GGGTGAAAGAGTGGAAGAAG+GGG | - | chr3.3:49400399-49400418 | MS.gene08079:CDS | 50.0% | |
| GGTTCTTGAGCCATCTCAAG+GGG | + | chr3.3:49399208-49399227 | None:intergenic | 50.0% | |
| GTCTTCGCCTCAGAATTCCT+TGG | + | chr3.3:49399255-49399274 | None:intergenic | 50.0% | |
| GTTGGAGGCTCAAGGAAGTT+AGG | - | chr3.3:49399787-49399806 | MS.gene08079:intron | 50.0% | |
| TCGCATGTTGGGAGAATTCC+AGG | + | chr3.3:49400299-49400318 | None:intergenic | 50.0% | |
| TGACCAACAAGTTCCAGCTG+AGG | + | chr3.3:49398711-49398730 | None:intergenic | 50.0% | |
| TGGAAGAAGGGGACTGTTCA+GGG | - | chr3.3:49400410-49400429 | MS.gene08079:CDS | 50.0% | |
| ! | AAAACTGATGGTGAGGCCTC+GGG | - | chr3.3:49400187-49400206 | MS.gene08079:intron | 50.0% |
| ! | GAAAACTGATGGTGAGGCCT+CGG | - | chr3.3:49400186-49400205 | MS.gene08079:intron | 50.0% |
| ! | TCGGGAAAGGATAATGGCTC+TGG | - | chr3.3:49400205-49400224 | MS.gene08079:intron | 50.0% |
| !! | CAAAGACTGGCCTTCCTCAT+TGG | + | chr3.3:49398381-49398400 | None:intergenic | 50.0% |
| !! | CATGCTTTGAGAAGGGCAAG+AGG | - | chr3.3:49400142-49400161 | MS.gene08079:intron | 50.0% |
| !! | TATTCTGAACCTTGGTGGCG+TGG | - | chr3.3:49398275-49398294 | MS.gene08079:CDS | 50.0% |
| AAGCTCTCAGATGCAGGCAG+TGG | - | chr3.3:49399848-49399867 | MS.gene08079:intron | 55.0% | |
| AGCTTATCCTCACCAGCCGT+TGG | - | chr3.3:49399018-49399037 | MS.gene08079:intron | 55.0% | |
| CAGGTTTCCGCAGAGTCTGA+AGG | + | chr3.3:49400280-49400299 | None:intergenic | 55.0% | |
| CCTGATTGATTGGGAGCAGC+AGG | + | chr3.3:49398455-49398474 | None:intergenic | 55.0% | |
| CCTGCTGCTCCCAATCAATC+AGG | - | chr3.3:49398452-49398471 | MS.gene08079:CDS | 55.0% | |
| CTTCAGACTCTGCGGAAACC+TGG | - | chr3.3:49400278-49400297 | MS.gene08079:CDS | 55.0% | |
| GAGGCCTCGGGAAAGGATAA+TGG | - | chr3.3:49400199-49400218 | MS.gene08079:intron | 55.0% | |
| GATCTGCTGTTGGAGGCTCA+AGG | - | chr3.3:49399779-49399798 | MS.gene08079:intron | 55.0% | |
| GTGGAAGAAGGGGACTGTTC+AGG | - | chr3.3:49400409-49400428 | MS.gene08079:CDS | 55.0% | |
| TATCCAACACCACGCCACCA+AGG | + | chr3.3:49398287-49398306 | None:intergenic | 55.0% | |
| TCACATACCAACGGCTGGTG+AGG | + | chr3.3:49399028-49399047 | None:intergenic | 55.0% | |
| TGAGCCATCTCAAGGGGCAA+AGG | + | chr3.3:49399202-49399221 | None:intergenic | 55.0% | |
| ! | TTGAGAAGGGCAAGAGGCAC+CGG | - | chr3.3:49400148-49400167 | MS.gene08079:intron | 55.0% |
| !! | CTCAAGGGGCAAAGGCATTC+TGG | + | chr3.3:49399194-49399213 | None:intergenic | 55.0% |
| !! | GGCAAAGGCATTCTGGCATG+AGG | + | chr3.3:49399187-49399206 | None:intergenic | 55.0% |
| !! | TGGAAGCATCTCCTCGAACG+AGG | - | chr3.3:49400441-49400460 | MS.gene08079:CDS | 55.0% |
| CCACCGGGCTGAAAGGAATG+AGG | + | chr3.3:49398251-49398270 | None:intergenic | 60.0% | |
| CCAGCTGAGGAGTCTGTGTG+AGG | + | chr3.3:49398698-49398717 | None:intergenic | 60.0% | |
| CCTCACACAGACTCCTCAGC+TGG | - | chr3.3:49398695-49398714 | MS.gene08079:intron | 60.0% | |
| CCTCATTCCTTTCAGCCCGG+TGG | - | chr3.3:49398248-49398267 | MS.gene08079:CDS | 60.0% | |
| GACTGTTCAGGGCAGCTACG+TGG | - | chr3.3:49400421-49400440 | MS.gene08079:CDS | 60.0% | |
| ! | TGATGGTGAGGCCTCGGGAA+AGG | - | chr3.3:49400192-49400211 | MS.gene08079:intron | 60.0% |
| !! | GAACCTTGGTGGCGTGGTGT+TGG | - | chr3.3:49398281-49398300 | MS.gene08079:CDS | 60.0% |
| CCTCTGCGATGCCTCGTTCG+AGG | + | chr3.3:49400455-49400474 | None:intergenic | 65.0% | |
| !! | AGAAGGGCAAGAGGCACCGG+AGG | - | chr3.3:49400151-49400170 | MS.gene08079:intron | 65.0% |
| !! | CCTCGAACGAGGCATCGCAG+AGG | - | chr3.3:49400452-49400471 | MS.gene08079:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49398206 | 49400492 | 49398206 | ID=MS.gene08079 |
| chr3.3 | mRNA | 49398206 | 49400492 | 49398206 | ID=MS.gene08079.t1;Parent=MS.gene08079 |
| chr3.3 | exon | 49400225 | 49400492 | 49400225 | ID=MS.gene08079.t1.exon1;Parent=MS.gene08079.t1 |
| chr3.3 | CDS | 49400225 | 49400492 | 49400225 | ID=cds.MS.gene08079.t1;Parent=MS.gene08079.t1 |
| chr3.3 | exon | 49399961 | 49400067 | 49399961 | ID=MS.gene08079.t1.exon2;Parent=MS.gene08079.t1 |
| chr3.3 | CDS | 49399961 | 49400067 | 49399961 | ID=cds.MS.gene08079.t1;Parent=MS.gene08079.t1 |
| chr3.3 | exon | 49399659 | 49399730 | 49399659 | ID=MS.gene08079.t1.exon3;Parent=MS.gene08079.t1 |
| chr3.3 | CDS | 49399659 | 49399730 | 49399659 | ID=cds.MS.gene08079.t1;Parent=MS.gene08079.t1 |
| chr3.3 | exon | 49399374 | 49399538 | 49399374 | ID=MS.gene08079.t1.exon4;Parent=MS.gene08079.t1 |
| chr3.3 | CDS | 49399374 | 49399538 | 49399374 | ID=cds.MS.gene08079.t1;Parent=MS.gene08079.t1 |
| chr3.3 | exon | 49398206 | 49398583 | 49398206 | ID=MS.gene08079.t1.exon5;Parent=MS.gene08079.t1 |
| chr3.3 | CDS | 49398206 | 49398583 | 49398206 | ID=cds.MS.gene08079.t1;Parent=MS.gene08079.t1 |
| Gene Sequence |
| Protein sequence |
