AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049887


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049887.t1 MTR_8g085780 94.766 363 5 2 1 350 212 573 0.0 716
MS.gene049887.t1 MTR_5g069410 52.846 369 148 4 1 350 200 561 5.43e-138 404
MS.gene049887.t1 MTR_8g106395 22.837 289 178 9 72 336 91 358 2.76e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049887.t1 AT4G08810 75.824 364 64 4 1 350 199 552 0.0 562
MS.gene049887.t1 AT4G12700 51.771 367 152 5 1 350 198 556 1.33e-132 390
MS.gene049887.t1 AT2G04280 51.491 369 154 6 1 350 201 563 5.74e-132 389
MS.gene049887.t1 AT3G56750 25.620 242 154 9 72 291 103 340 2.34e-12 68.2
MS.gene049887.t1 AT2G41150 23.967 242 159 7 72 291 103 341 7.12e-12 66.6

Find 91 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGAGTTATGGCCTAATT+TGG 0.171963 4.3:-15109781 MS.gene049887:CDS
CCTTCTTCATCTTTATTACT+AGG 0.181955 4.3:+15110194 None:intergenic
TTTATCAAAGTAATTATAAT+AGG 0.195025 4.3:+15109671 None:intergenic
GCCCTTCTTGAGAAGCTTAA+AGG 0.218876 4.3:-15109738 MS.gene049887:CDS
CGCCTGAGCCAGAGAATTAT+TGG 0.236292 4.3:-15109962 MS.gene049887:CDS
TCATTTGCTTGATGATTATA+AGG 0.272334 4.3:-15109628 MS.gene049887:CDS
CATGCTGGTGGATTTCATTC+TGG 0.279493 4.3:-15110506 MS.gene049887:CDS
TAATGACACGATACCGAGTT+TGG 0.304440 4.3:-15110390 MS.gene049887:CDS
GCCAGAGAATTATTGGTATA+GGG 0.325203 4.3:-15109955 MS.gene049887:CDS
TGAGTAACAACTTTCCTAAC+AGG 0.348932 4.3:+15110047 None:intergenic
TTGACAAAAGATTGCAAAGA+TGG 0.358588 4.3:-15109459 MS.gene049887:CDS
TGGGATCGGAGACTAATTTC+AGG 0.373502 4.3:-15110370 MS.gene049887:CDS
CCCTTCTTGAGAAGCTTAAA+GGG 0.378859 4.3:-15109737 MS.gene049887:CDS
TGGAGAGAAAGCTCAAAATA+AGG 0.379163 4.3:-15109799 MS.gene049887:CDS
AGCCAGAGAATTATTGGTAT+AGG 0.384183 4.3:-15109956 MS.gene049887:CDS
CCAATCCGTGGCCGTGGCAC+TGG 0.386217 4.3:+15110464 None:intergenic
TTTGAGGGATTGGAAGAGAT+GGG 0.394414 4.3:-15110099 MS.gene049887:CDS
TAGGAAAGTTGTTACTCATA+AGG 0.399578 4.3:-15110042 MS.gene049887:CDS
GGAAAGCCTGTTGAGTTTGA+TGG 0.399767 4.3:-15109552 MS.gene049887:CDS
AACATTGTTACTGAGATTAG+TGG 0.401648 4.3:-15109861 MS.gene049887:CDS
CTTCTTCATCTTTATTACTA+GGG 0.403674 4.3:+15110195 None:intergenic
GCCACGGATTGGTGGTGGTA+AGG 0.404830 4.3:-15110453 MS.gene049887:CDS
AAGATAAGAGCACTGTCATT+TGG 0.406687 4.3:-15109998 MS.gene049887:CDS
TTATCAAAGTAATTATAATA+GGG 0.406913 4.3:+15109672 None:intergenic
TACTGAGATTAGTGGAAGAA+TGG 0.408267 4.3:-15109853 MS.gene049887:CDS
CGCTATAAGGTTATTCATGC+TGG 0.431242 4.3:-15110521 None:intergenic
GCGGGGTGGTGATTATTGTA+AGG 0.437445 4.3:-15110324 MS.gene049887:CDS
CCACGGATTGGTGGTGGTAA+GGG 0.441656 4.3:-15110452 MS.gene049887:CDS
GAAGTATCGGAATCCAAATT+AGG 0.442142 4.3:+15109768 None:intergenic
ATGTATCCATCAAACTCAAC+AGG 0.446898 4.3:+15109546 None:intergenic
AGATTAGTGGAAGAATGGAT+TGG 0.466631 4.3:-15109848 MS.gene049887:CDS
ACCCTATACCAATAATTCTC+TGG 0.468769 4.3:+15109954 None:intergenic
AAGCTCAAAATAAGGAGTTA+TGG 0.469344 4.3:-15109791 MS.gene049887:CDS
AAGGGCATCCGGCGAAGTAT+CGG 0.470739 4.3:+15109755 None:intergenic
TACCAATAATTCTCTGGCTC+AGG 0.472091 4.3:+15109960 None:intergenic
AAGGGTTGGTTCAACCTTGG+AGG 0.472963 4.3:-15109719 MS.gene049887:CDS
AATGACACGATACCGAGTTT+GGG 0.473052 4.3:-15110389 MS.gene049887:CDS
AGCTTCTCAAGAAGGGCATC+CGG 0.474618 4.3:+15109744 None:intergenic
CCCTTTAAGCTTCTCAAGAA+GGG 0.478566 4.3:+15109737 None:intergenic
TAAACTGAGAGCGAACTTCA+AGG 0.482035 4.3:-15109652 MS.gene049887:CDS
CCACCACCAATCCGTGGCCG+TGG 0.482081 4.3:+15110458 None:intergenic
ACCCTTTAAGCTTCTCAAGA+AGG 0.482908 4.3:+15109736 None:intergenic
GATTAGTGGAAGAATGGATT+GGG 0.486657 4.3:-15109847 MS.gene049887:CDS
CGGAGACTAATTTCAGGAAT+GGG 0.487253 4.3:-15110364 MS.gene049887:CDS
CCTAGTAATAAAGATGAAGA+AGG 0.488499 4.3:-15110194 MS.gene049887:CDS
GTGCCACGGCCACGGATTGG+TGG 0.497501 4.3:-15110461 MS.gene049887:CDS
TTATCTTTCTGAAGTTGCAT+AGG 0.506393 4.3:+15110014 None:intergenic
GAAGTATTTGTATTATTCGC+GGG 0.508790 4.3:-15110342 MS.gene049887:CDS
CACGGATTGGTGGTGGTAAG+GGG 0.509278 4.3:-15110451 MS.gene049887:CDS
TCGGAGACTAATTTCAGGAA+TGG 0.517619 4.3:-15110365 MS.gene049887:CDS
CGGGGTGGTGATTATTGTAA+GGG 0.526101 4.3:-15110323 MS.gene049887:intron
CCAGTGCCACGGCCACGGAT+TGG 0.526126 4.3:-15110464 MS.gene049887:CDS
TCTTGAGAAGCTTAAAGGGT+TGG 0.526288 4.3:-15109733 MS.gene049887:CDS
GAAATCCAGTGCCACGGCCA+CGG 0.538894 4.3:-15110469 MS.gene049887:CDS
TTAAAGGGTTGGTTCAACCT+TGG 0.539372 4.3:-15109722 MS.gene049887:CDS
GATGCGGTTCATGTGGTTCG+TGG 0.542624 4.3:-15109819 MS.gene049887:CDS
GGAAGTATTTGTATTATTCG+CGG 0.544116 4.3:-15110343 MS.gene049887:CDS
CAAAGTATATTCAGAGACCT+TGG 0.544755 4.3:-15109914 MS.gene049887:CDS
TAATAAAGATGAAGAAGGGA+AGG 0.546402 4.3:-15110189 MS.gene049887:CDS
CCACGGCCACGGATTGGTGG+TGG 0.548013 4.3:-15110458 MS.gene049887:CDS
AGAGACCTTGGCATGCGTTG+TGG 0.558542 4.3:-15109902 MS.gene049887:CDS
AGAGGTTGCTTCTATTGTTG+AGG 0.559157 4.3:-15110132 MS.gene049887:CDS
GTTGCTTCTATTGTTGAGGA+AGG 0.559966 4.3:-15110128 MS.gene049887:CDS
ATGGATTTGAGTGTCTGTCT+AGG 0.566597 4.3:-15110230 MS.gene049887:CDS
GATTTCCACAACGCATGCCA+AGG 0.569572 4.3:+15109897 None:intergenic
TTCATTCTGGAGTAAATGCA+AGG 0.575495 4.3:-15110493 MS.gene049887:CDS
TTTGGATTCCGATACTTCGC+CGG 0.577771 4.3:-15109763 MS.gene049887:CDS
ATAAGAGCACTGTCATTTGG+AGG 0.583632 4.3:-15109995 MS.gene049887:CDS
TATAAGGTTATTCATGCTGG+TGG 0.583826 4.3:-15110518 None:intergenic
TGATGATTATAAGGAACTGT+GGG 0.584010 4.3:-15109619 MS.gene049887:CDS
TATTGGTATAGGGTTTGTGA+AGG 0.587545 4.3:-15109945 MS.gene049887:CDS
CACGATACCGAGTTTGGGAT+CGG 0.588112 4.3:-15110384 MS.gene049887:CDS
CCCTTACCACCACCAATCCG+TGG 0.590155 4.3:+15110452 None:intergenic
GCAATATACAAATTCCTCCA+AGG 0.607602 4.3:+15109705 None:intergenic
TTAGTCTCCGATCCCAAACT+CGG 0.610596 4.3:+15110377 None:intergenic
CTAGTAATAAAGATGAAGAA+GGG 0.614175 4.3:-15110193 MS.gene049887:CDS
GAAACTAGTCTTCTTAACAA+TGG 0.615471 4.3:-15109573 MS.gene049887:CDS
AAGTATTTGTATTATTCGCG+GGG 0.616803 4.3:-15110341 MS.gene049887:CDS
TTTCCACACGAGTCTTTCCA+CGG 0.619276 4.3:+15109493 None:intergenic
TATTTGTATTATTCGCGGGG+TGG 0.628601 4.3:-15110338 MS.gene049887:CDS
CAAGGAGAAATCCAGTGCCA+CGG 0.633555 4.3:-15110475 MS.gene049887:CDS
TTGATGATTATAAGGAACTG+TGG 0.636411 4.3:-15109620 MS.gene049887:CDS
GAGAGTTGCGGTGGATACAG+AGG 0.638410 4.3:-15109523 MS.gene049887:CDS
ATGCGTTGTGGAAATCAAAG+AGG 0.654360 4.3:-15109890 MS.gene049887:CDS
TTACCGTGGAAAGACTCGTG+TGG 0.682838 4.3:-15109496 MS.gene049887:CDS
TGGATACATGAGAGTTGCGG+TGG 0.686702 4.3:-15109532 MS.gene049887:CDS
GTAAGGGGAAAACTTTGCCG+CGG 0.691348 4.3:-15110436 MS.gene049887:CDS
ATGATTATAAGGAACTGTGG+GGG 0.695717 4.3:-15109617 MS.gene049887:CDS
GATGATTATAAGGAACTGTG+GGG 0.695989 4.3:-15109618 MS.gene049887:CDS
TCATCACGATTCGTTATCCG+CGG 0.702312 4.3:+15110419 None:intergenic
TGATGGATACATGAGAGTTG+CGG 0.703444 4.3:-15109535 MS.gene049887:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATCAAAGTAATTATAATA+GGG + chr4.3:15110286-15110305 None:intergenic 10.0%
!! TTTATCAAAGTAATTATAAT+AGG + chr4.3:15110287-15110306 None:intergenic 10.0%
!!! TTTGAATAGAACTTTTGTTA+TGG - chr4.3:15109706-15109725 MS.gene049887:CDS 20.0%
! CTAGTAATAAAGATGAAGAA+GGG - chr4.3:15109762-15109781 MS.gene049887:CDS 25.0%
! CTTCTTCATCTTTATTACTA+GGG + chr4.3:15109763-15109782 None:intergenic 25.0%
!! TCATTTGCTTGATGATTATA+AGG - chr4.3:15110327-15110346 MS.gene049887:CDS 25.0%
!!! TTTATGTGGAGTTTTTTATG+TGG - chr4.3:15109665-15109684 MS.gene049887:CDS 25.0%
AACATTGTTACTGAGATTAG+TGG - chr4.3:15110094-15110113 MS.gene049887:CDS 30.0%
AAGCTCAAAATAAGGAGTTA+TGG - chr4.3:15110164-15110183 MS.gene049887:CDS 30.0%
AAGTATTTGTATTATTCGCG+GGG - chr4.3:15109614-15109633 MS.gene049887:CDS 30.0%
CCTAGTAATAAAGATGAAGA+AGG - chr4.3:15109761-15109780 MS.gene049887:CDS 30.0%
CCTTCTTCATCTTTATTACT+AGG + chr4.3:15109764-15109783 None:intergenic 30.0%
GACTCATCTTAAGAAAAAGA+AGG - chr4.3:15109883-15109902 MS.gene049887:CDS 30.0%
TAATAAAGATGAAGAAGGGA+AGG - chr4.3:15109766-15109785 MS.gene049887:CDS 30.0%
TAGGAAAGTTGTTACTCATA+AGG - chr4.3:15109913-15109932 MS.gene049887:CDS 30.0%
TGATGATTATAAGGAACTGT+GGG - chr4.3:15110336-15110355 MS.gene049887:CDS 30.0%
TTGACAAAAGATTGCAAAGA+TGG - chr4.3:15110496-15110515 MS.gene049887:CDS 30.0%
! AGGGTATGAATCATTTTATG+TGG - chr4.3:15109651-15109670 MS.gene049887:CDS 30.0%
! GAAGTATTTGTATTATTCGC+GGG - chr4.3:15109613-15109632 MS.gene049887:CDS 30.0%
! TGATTTTGAGCATTTGAAAG+AGG - chr4.3:15109805-15109824 MS.gene049887:CDS 30.0%
! TTGATGATTATAAGGAACTG+TGG - chr4.3:15110335-15110354 MS.gene049887:CDS 30.0%
!! GAAACTAGTCTTCTTAACAA+TGG - chr4.3:15110382-15110401 MS.gene049887:CDS 30.0%
!! GGAAGTATTTGTATTATTCG+CGG - chr4.3:15109612-15109631 MS.gene049887:CDS 30.0%
!! TTATCTTTCTGAAGTTGCAT+AGG + chr4.3:15109944-15109963 None:intergenic 30.0%
!!! TGGAGTTTTTTATGTGGTTT+AGG - chr4.3:15109671-15109690 MS.gene049887:CDS 30.0%
ACCCTATACCAATAATTCTC+TGG + chr4.3:15110004-15110023 None:intergenic 35.0%
AGAAAAAGAAGGTTCCTGTT+AGG - chr4.3:15109894-15109913 MS.gene049887:CDS 35.0%
AGATTAGTGGAAGAATGGAT+TGG - chr4.3:15110107-15110126 MS.gene049887:CDS 35.0%
AGCCAGAGAATTATTGGTAT+AGG - chr4.3:15109999-15110018 MS.gene049887:CDS 35.0%
ATGATTATAAGGAACTGTGG+GGG - chr4.3:15110338-15110357 MS.gene049887:CDS 35.0%
ATGTATCCATCAAACTCAAC+AGG + chr4.3:15110412-15110431 None:intergenic 35.0%
CAAAGTATATTCAGAGACCT+TGG - chr4.3:15110041-15110060 MS.gene049887:CDS 35.0%
GATGATTATAAGGAACTGTG+GGG - chr4.3:15110337-15110356 MS.gene049887:CDS 35.0%
GCAATATACAAATTCCTCCA+AGG + chr4.3:15110253-15110272 None:intergenic 35.0%
GCCAGAGAATTATTGGTATA+GGG - chr4.3:15110000-15110019 MS.gene049887:CDS 35.0%
TAAGGAGTTATGGCCTAATT+TGG - chr4.3:15110174-15110193 MS.gene049887:CDS 35.0%
TACTGAGATTAGTGGAAGAA+TGG - chr4.3:15110102-15110121 MS.gene049887:CDS 35.0%
TATTGGTATAGGGTTTGTGA+AGG - chr4.3:15110010-15110029 MS.gene049887:CDS 35.0%
TGAGTAACAACTTTCCTAAC+AGG + chr4.3:15109911-15109930 None:intergenic 35.0%
TGGAGAGAAAGCTCAAAATA+AGG - chr4.3:15110156-15110175 MS.gene049887:CDS 35.0%
! ATGAAGAAGGGAAGGATTTT+AGG - chr4.3:15109774-15109793 MS.gene049887:CDS 35.0%
! GATTAGTGGAAGAATGGATT+GGG - chr4.3:15110108-15110127 MS.gene049887:CDS 35.0%
!! AAGATAAGAGCACTGTCATT+TGG - chr4.3:15109957-15109976 MS.gene049887:CDS 35.0%
!! GAAGTATCGGAATCCAAATT+AGG + chr4.3:15110190-15110209 None:intergenic 35.0%
!! TTCATTCTGGAGTAAATGCA+AGG - chr4.3:15109462-15109481 MS.gene049887:CDS 35.0%
!!! AATGGATTGGGATTTTGATG+CGG - chr4.3:15110120-15110139 MS.gene049887:CDS 35.0%
AATGACACGATACCGAGTTT+GGG - chr4.3:15109566-15109585 MS.gene049887:CDS 40.0%
ACCCTTTAAGCTTCTCAAGA+AGG + chr4.3:15110222-15110241 None:intergenic 40.0%
AGAGGTTGCTTCTATTGTTG+AGG - chr4.3:15109823-15109842 MS.gene049887:CDS 40.0%
ATGCGTTGTGGAAATCAAAG+AGG - chr4.3:15110065-15110084 MS.gene049887:CDS 40.0%
ATGGATTTGAGTGTCTGTCT+AGG - chr4.3:15109725-15109744 MS.gene049887:CDS 40.0%
CCCTTCTTGAGAAGCTTAAA+GGG - chr4.3:15110218-15110237 MS.gene049887:CDS 40.0%
CCCTTTAAGCTTCTCAAGAA+GGG + chr4.3:15110221-15110240 None:intergenic 40.0%
CGGAGACTAATTTCAGGAAT+GGG - chr4.3:15109591-15109610 MS.gene049887:CDS 40.0%
GTTGCTTCTATTGTTGAGGA+AGG - chr4.3:15109827-15109846 MS.gene049887:CDS 40.0%
TAAACTGAGAGCGAACTTCA+AGG - chr4.3:15110303-15110322 MS.gene049887:intron 40.0%
TAATGACACGATACCGAGTT+TGG - chr4.3:15109565-15109584 MS.gene049887:CDS 40.0%
TATTTGTATTATTCGCGGGG+TGG - chr4.3:15109617-15109636 MS.gene049887:CDS 40.0%
TCGGAGACTAATTTCAGGAA+TGG - chr4.3:15109590-15109609 MS.gene049887:CDS 40.0%
TCTTGAGAAGCTTAAAGGGT+TGG - chr4.3:15110222-15110241 MS.gene049887:CDS 40.0%
TTTGAGGGATTGGAAGAGAT+GGG - chr4.3:15109856-15109875 MS.gene049887:CDS 40.0%
! TACCAATAATTCTCTGGCTC+AGG + chr4.3:15109998-15110017 None:intergenic 40.0%
! TGAGGAAGGTGAGTTTTTGA+GGG - chr4.3:15109841-15109860 MS.gene049887:CDS 40.0%
! TGATGGATACATGAGAGTTG+CGG - chr4.3:15110420-15110439 MS.gene049887:CDS 40.0%
! TTGAGGAAGGTGAGTTTTTG+AGG - chr4.3:15109840-15109859 MS.gene049887:CDS 40.0%
!! AAGGTGAGTTTTTGAGGGAT+TGG - chr4.3:15109846-15109865 MS.gene049887:CDS 40.0%
!! ATAAGAGCACTGTCATTTGG+AGG - chr4.3:15109960-15109979 MS.gene049887:CDS 40.0%
!! TTAAAGGGTTGGTTCAACCT+TGG - chr4.3:15110233-15110252 MS.gene049887:CDS 40.0%
!! TTTTGAGGGATTGGAAGAGA+TGG - chr4.3:15109855-15109874 MS.gene049887:CDS 40.0%
CGGGGTGGTGATTATTGTAA+GGG - chr4.3:15109632-15109651 MS.gene049887:CDS 45.0%
GCCCTTCTTGAGAAGCTTAA+AGG - chr4.3:15110217-15110236 MS.gene049887:CDS 45.0%
GGAAAGCCTGTTGAGTTTGA+TGG - chr4.3:15110403-15110422 MS.gene049887:CDS 45.0%
TCATCACGATTCGTTATCCG+CGG + chr4.3:15109539-15109558 None:intergenic 45.0%
TGGGATCGGAGACTAATTTC+AGG - chr4.3:15109585-15109604 MS.gene049887:CDS 45.0%
TTAGTCTCCGATCCCAAACT+CGG + chr4.3:15109581-15109600 None:intergenic 45.0%
TTTCCACACGAGTCTTTCCA+CGG + chr4.3:15110465-15110484 None:intergenic 45.0%
TTTGGATTCCGATACTTCGC+CGG - chr4.3:15110192-15110211 MS.gene049887:CDS 45.0%
! GATACAGAGGTCTTTTACCG+TGG - chr4.3:15110445-15110464 MS.gene049887:CDS 45.0%
!! CATGCTGGTGGATTTCATTC+TGG - chr4.3:15109449-15109468 MS.gene049887:CDS 45.0%
!! GGATTTTGATGCGGTTCATG+TGG - chr4.3:15110129-15110148 MS.gene049887:CDS 45.0%
CAAGGAGAAATCCAGTGCCA+CGG - chr4.3:15109480-15109499 MS.gene049887:CDS 50.0%
CGCCTGAGCCAGAGAATTAT+TGG - chr4.3:15109993-15110012 MS.gene049887:CDS 50.0%
GATTTCCACAACGCATGCCA+AGG + chr4.3:15110061-15110080 None:intergenic 50.0%
GCGGGGTGGTGATTATTGTA+AGG - chr4.3:15109631-15109650 MS.gene049887:CDS 50.0%
GTAAGGGGAAAACTTTGCCG+CGG - chr4.3:15109519-15109538 MS.gene049887:CDS 50.0%
TGGATACATGAGAGTTGCGG+TGG - chr4.3:15110423-15110442 MS.gene049887:CDS 50.0%
TGTGGGGGAATTCGAGTGAA+TGG - chr4.3:15110353-15110372 MS.gene049887:CDS 50.0%
TTACCGTGGAAAGACTCGTG+TGG - chr4.3:15110459-15110478 MS.gene049887:CDS 50.0%
! CACGATACCGAGTTTGGGAT+CGG - chr4.3:15109571-15109590 MS.gene049887:CDS 50.0%
!! AAGGGTTGGTTCAACCTTGG+AGG - chr4.3:15110236-15110255 MS.gene049887:CDS 50.0%
!! AGCTTCTCAAGAAGGGCATC+CGG + chr4.3:15110214-15110233 None:intergenic 50.0%
AGAGACCTTGGCATGCGTTG+TGG - chr4.3:15110053-15110072 MS.gene049887:CDS 55.0%
GAGAGTTGCGGTGGATACAG+AGG - chr4.3:15110432-15110451 MS.gene049887:CDS 55.0%
GATGCGGTTCATGTGGTTCG+TGG - chr4.3:15110136-15110155 MS.gene049887:CDS 55.0%
!! AAGGGCATCCGGCGAAGTAT+CGG + chr4.3:15110203-15110222 None:intergenic 55.0%
!! CACGGATTGGTGGTGGTAAG+GGG - chr4.3:15109504-15109523 MS.gene049887:CDS 55.0%
!! CCACGGATTGGTGGTGGTAA+GGG - chr4.3:15109503-15109522 MS.gene049887:CDS 55.0%
CCCTTACCACCACCAATCCG+TGG + chr4.3:15109506-15109525 None:intergenic 60.0%
GAAATCCAGTGCCACGGCCA+CGG - chr4.3:15109486-15109505 MS.gene049887:CDS 60.0%
!! GCCACGGATTGGTGGTGGTA+AGG - chr4.3:15109502-15109521 MS.gene049887:CDS 60.0%
CCAATCCGTGGCCGTGGCAC+TGG + chr4.3:15109494-15109513 None:intergenic 70.0%
CCACCACCAATCCGTGGCCG+TGG + chr4.3:15109500-15109519 None:intergenic 70.0%
CCAGTGCCACGGCCACGGAT+TGG - chr4.3:15109491-15109510 MS.gene049887:CDS 70.0%
!! CCACGGCCACGGATTGGTGG+TGG - chr4.3:15109497-15109516 MS.gene049887:CDS 70.0%
!! GTGCCACGGCCACGGATTGG+TGG - chr4.3:15109494-15109513 MS.gene049887:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 15109443 15110534 15109443 ID=MS.gene049887
chr4.3 mRNA 15109443 15110534 15109443 ID=MS.gene049887.t1;Parent=MS.gene049887
chr4.3 exon 15110324 15110534 15110324 ID=MS.gene049887.t1.exon1;Parent=MS.gene049887.t1
chr4.3 CDS 15110324 15110534 15110324 ID=cds.MS.gene049887.t1;Parent=MS.gene049887.t1
chr4.3 exon 15109443 15110284 15109443 ID=MS.gene049887.t1.exon2;Parent=MS.gene049887.t1
chr4.3 CDS 15109443 15110284 15109443 ID=cds.MS.gene049887.t1;Parent=MS.gene049887.t1
Gene Sequence

>MS.gene049887

GTTATTCATGCTGGTGGATTTCATTCTGGAGTAAATGCAAGGAGAAATCCAGTGCCACGGCCACGGATTGGTGGTGGTAAGGGGAAAACTTTGCCGCGGATAACGAATCGTGATGATCAGATTAATGACACGATACCGAGTTTGGGATCGGAGACTAATTTCAGGAATGGGAAGTATTTGTATTATTCGCGGGGTGGTGATTATTGTAAGGGTATGAATCATTTTATGTGGAGTTTTTTATGTGGTTTAGGTGAAGCTATGTTTTTGAATAGAACTTTTGTTATGGATTTGAGTGTCTGTCTAGGTGCAATGTATAACCCTAGTAATAAAGATGAAGAAGGGAAGGATTTTAGGTATTACTTTGATTTTGAGCATTTGAAAGAGGTTGCTTCTATTGTTGAGGAAGGTGAGTTTTTGAGGGATTGGAAGAGATGGGATAAGACTCATCTTAAGAAAAAGAAGGTTCCTGTTAGGAAAGTTGTTACTCATAAGGTAACTCCTATGCAACTTCAGAAAGATAAGAGCACTGTCATTTGGAGGCAATTTGATTCGCCTGAGCCAGAGAATTATTGGTATAGGGTTTGTGAAGGTCAAGCTGCAAAGTATATTCAGAGACCTTGGCATGCGTTGTGGAAATCAAAGAGGTTAATGAACATTGTTACTGAGATTAGTGGAAGAATGGATTGGGATTTTGATGCGGTTCATGTGGTTCGTGGAGAGAAAGCTCAAAATAAGGAGTTATGGCCTAATTTGGATTCCGATACTTCGCCGGATGCCCTTCTTGAGAAGCTTAAAGGGTTGGTTCAACCTTGGAGGAATTTGTATATTGCTACTAATGAGCCCTATTATAATTACTTTGATAAACTGAGAGCGAACTTCAAGGTTCATTTGCTTGATGATTATAAGGAACTGTGGGGGAATTCGAGTGAATGGTACAATGAAACTAGTCTTCTTAACAATGGAAAGCCTGTTGAGTTTGATGGATACATGAGAGTTGCGGTGGATACAGAGGTCTTTTACCGTGGAAAGACTCGTGTGGAAACATTTTATAATTTGACAAAAGATTGCAAAGATGGAATTAATACATGCTGA

Protein sequence

>MS.gene049887.t1

VIHAGGFHSGVNARRNPVPRPRIGGGKGKTLPRITNRDDQINDTIPSLGSETNFRNGKYLYYSRGGDYCKGEAMFLNRTFVMDLSVCLGAMYNPSNKDEEGKDFRYYFDFEHLKEVASIVEEGEFLRDWKRWDKTHLKKKKVPVRKVVTHKVTPMQLQKDKSTVIWRQFDSPEPENYWYRVCEGQAAKYIQRPWHALWKSKRLMNIVTEISGRMDWDFDAVHVVRGEKAQNKELWPNLDSDTSPDALLEKLKGLVQPWRNLYIATNEPYYNYFDKLRANFKVHLLDDYKELWGNSSEWYNETSLLNNGKPVEFDGYMRVAVDTEVFYRGKTRVETFYNLTKDCKDGINTC