AlfalfaGEDB | MS.gene08112

M. sativa cultivar XinJiangDaYe / MS.gene08112

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08112.t1	XP_013460118.1	96.3	164	6	0	2	165	3	166	3.00E-83	317.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08112.t1	B7FGG7	96.3	164	6	0	2	165	3	166	2.2e-83	317.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052309	MS.gene08112	-0.812151	4.90E-51	-1.69E-46
MS.gene058201	MS.gene08112	0.801879	7.31E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08112.t1	MTR_3g462220	96.341	164	6	0	2	165	3	166	3.54e-117	328
MS.gene08112.t1	MTR_5g016450	38.372	172	91	6	5	165	10	177	6.40e-27	100
MS.gene08112.t1	MTR_5g016450	38.596	171	91	6	5	165	10	176	1.02e-26	99.8
MS.gene08112.t1	MTR_5g016450	38.816	152	80	5	5	147	10	157	1.89e-25	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08112.t1	AT4G37300	39.205	176	92	6	1	165	1	172	2.53e-26	98.6

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Find 24 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATACCTCACTGAAAGGAGC+TGG	0.537040	3.3:-49930772	None:intergenic
ACAATTCAGACAAACCTAAC+AGG	0.431560	3.3:+49930895	MS.gene08112:CDS
AGATGAGTGTCACTTCTGTT+TGG	0.417853	3.3:-49928995	None:intergenic
AGGAGCTGGAACCCAGTCAT+TGG	0.486673	3.3:-49930758	None:intergenic
ATGTAAAATACCTCACTGAA+AGG	0.593015	3.3:-49930778	None:intergenic
CAATCCAGCAACCAATGACT+GGG	0.590043	3.3:+49930747	MS.gene08112:CDS
CGTAGACAAACATCATCACA+CGG	0.672277	3.3:+49929880	MS.gene08112:CDS
CGTTGAAATTGTAGCATTTC+AGG	0.143934	3.3:-49929157	None:intergenic
CTTTCACCACAGACAGGAAA+AGG	0.363878	3.3:+49930640	MS.gene08112:intron
GAAGCATACTCACTACGTTG+AGG	0.680375	3.3:-49929097	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTAATGGTCATCAAAGAT+AGG	+	chr3.3:49930240-49930259	MS.gene08112:intron	30.0%
ATGTAAAATACCTCACTGAA+AGG	-	chr3.3:49930781-49930800	None:intergenic	30.0%
CAACAAAGTATGTACATGAA+TGG	-	chr3.3:49929972-49929991	None:intergenic	30.0%
CCAATTTCTGAACATAATTG+TGG	-	chr3.3:49929796-49929815	None:intergenic	30.0%
CCACAATTATGTTCAGAAAT+TGG	+	chr3.3:49929793-49929812	MS.gene08112:intron	30.0%
CGTGGAAATAAAACTTTAAG+AGG	-	chr3.3:49929234-49929253	None:intergenic	30.0%
GTTAATGGTCATCAAAGATA+GGG	+	chr3.3:49930241-49930260	MS.gene08112:intron	30.0%
TAAATGCTAGATGCAAATCT+AGG	-	chr3.3:49930151-49930170	None:intergenic	30.0%
TAATACTAGTCAAGTAGGAA+TGG	-	chr3.3:49929915-49929934	None:intergenic	30.0%
TTATTATGAAACTGGAAACG+TGG	-	chr3.3:49929252-49929271	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	49928980	49930929	49928980	ID=MS.gene08112
chr3.3	mRNA	49928980	49930929	49928980	ID=MS.gene08112.t1;Parent=MS.gene08112
chr3.3	exon	49928980	49929204	49928980	ID=MS.gene08112.t1.exon1;Parent=MS.gene08112.t1
chr3.3	CDS	49928980	49929204	49928980	ID=cds.MS.gene08112.t1;Parent=MS.gene08112.t1
chr3.3	exon	49929809	49929901	49929809	ID=MS.gene08112.t1.exon2;Parent=MS.gene08112.t1
chr3.3	CDS	49929809	49929901	49929809	ID=cds.MS.gene08112.t1;Parent=MS.gene08112.t1
chr3.3	exon	49930652	49930789	49930652	ID=MS.gene08112.t1.exon3;Parent=MS.gene08112.t1
chr3.3	CDS	49930652	49930789	49930652	ID=cds.MS.gene08112.t1;Parent=MS.gene08112.t1
chr3.3	exon	49930888	49930929	49930888	ID=MS.gene08112.t1.exon4;Parent=MS.gene08112.t1
chr3.3	CDS	49930888	49930929	49930888	ID=cds.MS.gene08112.t1;Parent=MS.gene08112.t1

Gene Sequence

>MS.gene08112

ATGGAGGCTAGAAGGCCAAACAGAAGTGACACTCATCTCTCAGCTGAAGAAGAAGCATCCATAGAAGCAAAAACAAGACACCATTTTGAAGAAGTGGCACCAAAAAGACACACAAAGCCTCAACGTAGTGAGTATGCTTCTCAATATGTTGATAATAATGTCTCAGATAATTCTGTTCCTGAAATGCTACAATTTCAACGTCTTGAAAATGATCCTCAAGAGAAGGTTTGTTCCTAAAACACAATGTTTTTCCTCTTAAAGTTTTATTTCCACGTTTCCAGTTTCATAATAAGTTAAATAAAAATTGACATCAAATTGTAAAAAATAAAAATAAAAAAAAGTATAGTATGATTTTGCGTTTGCCGGGAGTCGAACCCGGGTCTATTGCTTGGAAGGCAATTATCCTGACCGTTGGACTACAAACGCTTGATGTTAAAATTTCTCACTTTCTATTTAATATATTAACTTAGGATTCACATTTCTATTTCTTTGTACTTTTTTTTATAAAAGTATTTTTAGACTTTAATTTTTTTTTTTGAAACAACGGACTTTAATTATTATCATGTTGACCAAAAAAATTAAAGGTGATGATAATGTAAAAATGTAGTACTACTAGTAGTAATGCCTTTGGTCCTATTTGTAAGTCAATTATCTCAACAAAAATTGATGTATCTCATATAACCAAATTGTTGATATAATTGTCTCTTGTAAATAGGATCAAAAGAATGTAGTAATATTTTTGATAAAAATCGTAGTGTCTATTCGAGTGCTTCAAATATTTTTGTCATGACCTTTTTTTTTCCCTTTTTCATTCCACAATTATGTTCAGAAATTGGTTTACGATGGAAATGAAGTAGCTGAAGAATTTGTGGAAACAGAGTATTACAAAGATCTCAACAGCGTAGACAAACATCATCACACGGTATTTAGTTCCATTCCTACTTGACTAGTATTATTTTTTCTCAAAATATTCAAAGTATCTCACAAATCCATTCATGTACATACTTTGTTGAATTAAGATTTTTTGTTTAAGTCAATTTGTTTTGTAAAATATTGTACCTATTTTATTTTCTAATTTCTAATGGAGGGACAACTTTATATTCAATTTCCTTCAAAAAAAAAAAACTTTATATTCAATTAATGCCAACGAATCATATTTAATAGATCACCTAGATTTGCATCTAGCATTTACACATCGATTTGGATTCTTTTGTTATCACGACATCTCAAGTCATCAATAGAGAAAAGAAAGATACAAAAAGTTAATGGTCATCAAAGATAGGGCTGGATCGAGGGTCTATCGGTGTGTCTGGTATCTAAAATGTATTTGTGTACGATATTGATATGACACGAACACGTTTAATTATATTCGATTATATCATTGTTTTAGAATTATTGTCTAGAGATGGTAAAGCTAGTTGGCACTTGGCCGCCACACTTGGGCCCGTCCCTTTTATCCATTATATTAATAAGACCATTTTAGTTAATAAATCTTATGTTTTTTGAGAGAATAATATCTTATGTTATTATCATAATTTGTCAATAACCTTAGAAAACATTTAATATGAGATTGTTTTGTCAAAAAAAAAAAAATATAATATGAAATTGAGAAAATAATAGCATTTGGAAAGTAATCATAAATATTACATGAATATGTTTACTTTCACCACAGACAGGAAAAGGGTTTATTCAAGTTGAAAAAAGTGACACAAGCTTCCACATAGAACCAGATAACGACACTCATGACTCTCATCACTCTACTAAGGGCAATCCAGCAACCAATGACTGGGTTCCAGCTCCTTTCAGTGAGGTATTTTACATTTTTAACTACTCTTGCACTTCAAAGTATATTTTGTTCATCTCTCTATTTTGTTCTGAAAATCTTGCTTTGATTTGAATATGTTTTAGGAGGATAACAATTCAGACAAACCTAACAGGAGTGATAACTGA

Protein sequence

>MS.gene08112.t1

MEARRPNRSDTHLSAEEEASIEAKTRHHFEEVAPKRHTKPQRSEYASQYVDNNVSDNSVPEMLQFQRLENDPQEKKLVYDGNEVAEEFVETEYYKDLNSVDKHHHTTGKGFIQVEKSDTSFHIEPDNDTHDSHHSTKGNPATNDWVPAPFSEEDNNSDKPNRSDN