Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058201.t1 | KEH37161.1 | 89.1 | 119 | 11 | 1 | 33 | 149 | 22 | 140 | 8.00E-51 | 209.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058201.t1 | A0A072V6A6 | 89.1 | 119 | 11 | 1 | 33 | 149 | 22 | 140 | 5.8e-51 | 209.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene058201 | 0.801155 | 1.03E-48 | -1.69E-46 |
| MS.gene051633 | MS.gene058201 | 0.800716 | 1.27E-48 | -1.69E-46 |
| MS.gene051662 | MS.gene058201 | 0.828004 | 1.14E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene058201 | 0.803534 | 3.33E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene058201 | 0.80057 | 1.35E-48 | -1.69E-46 |
| MS.gene052302 | MS.gene058201 | 0.803908 | 2.79E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene058201 | -0.817332 | 3.48E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene058201 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene058201 | -0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene058201 | 0.826879 | 2.13E-54 | -1.69E-46 |
| MS.gene058200 | MS.gene058201 | 0.880667 | 4.55E-70 | -1.69E-46 |
| MS.gene058201 | MS.gene060476 | 0.818487 | 1.91E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene061113 | 0.802453 | 5.57E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene065137 | 0.800493 | 1.40E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene065378 | 0.810869 | 9.30E-51 | -1.69E-46 |
| MS.gene058201 | MS.gene06594 | 0.826556 | 2.54E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene06667 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene06806 | 0.835687 | 1.45E-56 | -1.69E-46 |
| MS.gene058201 | MS.gene068127 | 0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene068549 | 0.857016 | 2.18E-62 | -1.69E-46 |
| MS.gene058201 | MS.gene06865 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene07055 | 0.823611 | 1.26E-53 | -1.69E-46 |
| MS.gene058201 | MS.gene071529 | 0.803216 | 3.88E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene073317 | 0.801043 | 1.08E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene07368 | 0.817668 | 2.93E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene073833 | 0.816891 | 4.38E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene073962 | 0.836464 | 9.22E-57 | -1.69E-46 |
| MS.gene058201 | MS.gene07407 | 0.825915 | 3.61E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene08112 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene09136 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene20912 | 0.831445 | 1.66E-55 | -1.69E-46 |
| MS.gene058201 | MS.gene21134 | 0.813235 | 2.84E-51 | -1.69E-46 |
| MS.gene058201 | MS.gene21659 | 0.80621 | 9.19E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene22314 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene23923 | 0.808175 | 3.52E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene26990 | 0.825758 | 3.94E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene28929 | 0.801122 | 1.04E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene29820 | 0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene30855 | 0.823192 | 1.58E-53 | -1.69E-46 |
| MS.gene058201 | MS.gene39341 | 0.830516 | 2.81E-55 | -1.69E-46 |
| MS.gene058201 | MS.gene39658 | 0.836669 | 8.17E-57 | -1.69E-46 |
| MS.gene058201 | MS.gene48435 | 0.80624 | 9.05E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene50217 | 0.824107 | 9.66E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene50537 | -0.821991 | 3.01E-53 | -1.69E-46 |
| MS.gene058201 | MS.gene51419 | 0.882771 | 7.87E-71 | -1.69E-46 |
| MS.gene058201 | MS.gene53056 | 0.815684 | 8.15E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene54407 | 0.804242 | 2.37E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene54700 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene55263 | 0.822188 | 2.71E-53 | -1.69E-46 |
| MS.gene058201 | MS.gene55695 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene56484 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene60321 | 0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene63893 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene64424 | 0.818468 | 1.93E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene64426 | 0.804991 | 1.66E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene66884 | 0.808005 | 3.83E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene70989 | -0.82507 | 5.73E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene71833 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene72128 | 0.837835 | 4.11E-57 | -1.69E-46 |
| MS.gene058201 | MS.gene72130 | 0.825274 | 5.13E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene74960 | 0.817313 | 3.52E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene75128 | 0.806376 | 8.48E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene76620 | 0.819002 | 1.46E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene80996 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene81680 | 0.809371 | 1.96E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene82827 | 0.815658 | 8.26E-52 | -1.69E-46 |
| MS.gene058201 | MS.gene82983 | 0.800579 | 1.35E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene88229 | 0.805501 | 1.30E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene91548 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene93202 | 0.825842 | 3.76E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene93743 | 0.801141 | 1.04E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene95277 | 0.814194 | 1.74E-51 | -1.69E-46 |
| MS.gene058201 | MS.gene96220 | 0.826458 | 2.68E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene96284 | 0.827136 | 1.85E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene96331 | -0.828602 | 8.21E-55 | -1.69E-46 |
| MS.gene058201 | MS.gene96705 | 0.802964 | 4.37E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene97858 | 0.803072 | 4.15E-49 | -1.69E-46 |
| MS.gene058201 | MS.gene98277 | 0.819799 | 9.61E-53 | -1.69E-46 |
| MS.gene058201 | MS.gene98522 | 0.800716 | 1.27E-48 | -1.69E-46 |
| MS.gene058201 | MS.gene98524 | 0.80109 | 1.06E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058201.t1 | MTR_2g034750 | 89.076 | 119 | 11 | 1 | 33 | 149 | 22 | 140 | 1.43e-73 | 216 |
| MS.gene058201.t1 | MTR_2g034750 | 97.872 | 94 | 2 | 0 | 56 | 149 | 65 | 158 | 9.37e-66 | 197 |
| MS.gene058201.t1 | MTR_2g034750 | 67.516 | 157 | 27 | 5 | 12 | 149 | 5 | 156 | 1.07e-65 | 197 |
| MS.gene058201.t1 | MTR_2g034750 | 96.429 | 56 | 2 | 0 | 56 | 111 | 65 | 120 | 2.84e-34 | 117 |
| MS.gene058201.t1 | MTR_5g041790 | 63.889 | 72 | 22 | 2 | 74 | 145 | 40 | 107 | 1.51e-21 | 84.7 |
| MS.gene058201.t1 | MTR_5g041790 | 66.102 | 59 | 17 | 1 | 74 | 132 | 40 | 95 | 2.21e-19 | 78.2 |
| MS.gene058201.t1 | MTR_2g064890 | 58.571 | 70 | 26 | 1 | 80 | 149 | 36 | 102 | 4.25e-19 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058201.t1 | AT4G16146 | 65.476 | 84 | 29 | 0 | 66 | 149 | 10 | 93 | 7.56e-36 | 120 |
| MS.gene058201.t1 | AT1G69510 | 61.842 | 76 | 26 | 1 | 74 | 149 | 26 | 98 | 2.84e-23 | 89.0 |
| MS.gene058201.t1 | AT1G69510 | 61.842 | 76 | 26 | 1 | 74 | 149 | 26 | 98 | 2.84e-23 | 89.0 |
| MS.gene058201.t1 | AT1G69510 | 61.842 | 76 | 26 | 1 | 74 | 149 | 26 | 98 | 2.84e-23 | 89.0 |
| MS.gene058201.t1 | AT5G64130 | 50.000 | 94 | 41 | 3 | 56 | 147 | 7 | 96 | 1.38e-19 | 79.0 |
| MS.gene058201.t1 | AT5G64130 | 39.496 | 119 | 41 | 4 | 56 | 147 | 7 | 121 | 3.82e-14 | 65.5 |
Find 31 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCTCTTCGCTTGATTT+TGG | 0.271225 | 2.2:-54338979 | MS.gene058201:CDS |
| GTTATGTACCTCAACGTTAT+TGG | 0.287248 | 2.2:+54338762 | None:intergenic |
| AAAATATGTACCTGTAGTTT+TGG | 0.291948 | 2.2:+54336466 | None:intergenic |
| GATGTGCATGCAGGTCTTCT+TGG | 0.315613 | 2.2:+54336304 | None:intergenic |
| ATGTGCATGCAGGTCTTCTT+GGG | 0.321512 | 2.2:+54336305 | None:intergenic |
| AGAAGACCTGCATGCACATC+TGG | 0.388554 | 2.2:-54336301 | MS.gene058201:CDS |
| ACATCTGTGGGCAAGAAGTA+TGG | 0.427721 | 2.2:-54336848 | MS.gene058201:CDS |
| GACCCTGCGGCCAAAACTAC+AGG | 0.475768 | 2.2:-54336476 | MS.gene058201:intron |
| GTGTCGGTAACGTTTATGAT+AGG | 0.481034 | 2.2:-54339715 | None:intergenic |
| GTGAAAGAATTGTACGTTGA+GGG | 0.499061 | 2.2:-54339688 | MS.gene058201:CDS |
| ATGTCGTAGTTTATGCCGTT+AGG | 0.501608 | 2.2:+54339637 | None:intergenic |
| TAATCTCTACAGCAAGGTGC+TGG | 0.502471 | 2.2:-54336529 | MS.gene058201:intron |
| CAAAAGCAAGATGAAAGATA+AGG | 0.509914 | 2.2:+54338929 | None:intergenic |
| AGGCTTACTTTGGATATCAA+AGG | 0.525503 | 2.2:+54336803 | None:intergenic |
| AAATTATAGTCAACATCTGT+GGG | 0.528268 | 2.2:-54336860 | MS.gene058201:intron |
| GTTAGGATATCGCCATCGAT+TGG | 0.547178 | 2.2:+54339654 | None:intergenic |
| AATCAACCAGATGTGCATGC+AGG | 0.569567 | 2.2:+54336295 | None:intergenic |
| TAAATTATAGTCAACATCTG+TGG | 0.573145 | 2.2:-54336861 | MS.gene058201:intron |
| TGTTGAATAGGTAAAGGAGA+TGG | 0.580212 | 2.2:-54338815 | MS.gene058201:intron |
| AGCAGACTGGGCATTATGCA+AGG | 0.588087 | 2.2:-54336632 | MS.gene058201:intron |
| GCATAAACTACGACATCCAA+TGG | 0.593389 | 2.2:-54339630 | MS.gene058201:intron |
| CTGTGGGCAAGAAGTATGGT+GGG | 0.597221 | 2.2:-54336844 | MS.gene058201:CDS |
| GTATGAGATGGACCAATCGA+TGG | 0.604273 | 2.2:-54339666 | MS.gene058201:CDS |
| TGTGCATGCAGGTCTTCTTG+GGG | 0.609417 | 2.2:+54336306 | None:intergenic |
| TCTGTGGGCAAGAAGTATGG+TGG | 0.617985 | 2.2:-54336845 | MS.gene058201:CDS |
| AATCGATGGCGATATCCTAA+CGG | 0.638732 | 2.2:-54339652 | MS.gene058201:CDS |
| CGTGAAAGAATTGTACGTTG+AGG | 0.639166 | 2.2:-54339689 | MS.gene058201:CDS |
| TGTACGTTGAGGGTATGAGA+TGG | 0.661193 | 2.2:-54339678 | MS.gene058201:CDS |
| GTGCATGCAGGTCTTCTTGG+GGG | 0.664744 | 2.2:+54336307 | None:intergenic |
| TTATGCTGCCAATAACGTTG+AGG | 0.670547 | 2.2:-54338770 | MS.gene058201:intron |
| CAGCAGCCGTAGAGACCCTG+CGG | 0.737276 | 2.2:-54336489 | MS.gene058201:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAAAAAACAG+AGG | + | chr2.2:54339629-54339648 | None:intergenic | 10.0% |
| !! | AATAATAATTCAATTCAATA+TGG | - | chr2.2:54336464-54336483 | MS.gene058201:intron | 10.0% |
| !! | ATATTTAATGTGAAAATATA+AGG | + | chr2.2:54337343-54337362 | None:intergenic | 10.0% |
| !! | TAATATGAATCATTTAAATT+TGG | + | chr2.2:54336671-54336690 | None:intergenic | 10.0% |
| !! | TATAATAATTATATTATACG+AGG | + | chr2.2:54336741-54336760 | None:intergenic | 10.0% |
| !!! | AATATAGATATATAATTTGT+TGG | - | chr2.2:54339441-54339460 | MS.gene058201:intron | 10.0% |
| !!! | ATAAAGCATTTTTAAAATTA+AGG | - | chr2.2:54337941-54337960 | MS.gene058201:intron | 10.0% |
| !!! | ATTTTTAAAATTAAGGAAAA+AGG | - | chr2.2:54337948-54337967 | MS.gene058201:intron | 10.0% |
| !!! | ATTTTTTTTTTGTGTTAAAA+AGG | - | chr2.2:54339317-54339336 | MS.gene058201:intron | 10.0% |
| !!! | TTTTTAACACAAAAAAAAAA+TGG | + | chr2.2:54339318-54339337 | None:intergenic | 10.0% |
| !! | AACAACATAGAAAATAAAAT+AGG | + | chr2.2:54336946-54336965 | None:intergenic | 15.0% |
| !! | ATCCTTATGTAAAAAAATTA+TGG | + | chr2.2:54338884-54338903 | None:intergenic | 15.0% |
| !! | ATTCAGTATTATAAAAGTTA+GGG | + | chr2.2:54339069-54339088 | None:intergenic | 15.0% |
| !! | ATTGATTAATCTTCATTAAA+TGG | - | chr2.2:54337142-54337161 | MS.gene058201:intron | 15.0% |
| !! | TATTCAGTATTATAAAAGTT+AGG | + | chr2.2:54339070-54339089 | None:intergenic | 15.0% |
| !! | TGAAAAATATTTCATGTATA+TGG | + | chr2.2:54337313-54337332 | None:intergenic | 15.0% |
| !! | TTTAGTTGTACAATATATAA+TGG | + | chr2.2:54337370-54337389 | None:intergenic | 15.0% |
| !!! | TACTTTTTATCTTTTTTCTT+TGG | - | chr2.2:54336839-54336858 | MS.gene058201:CDS | 15.0% |
| !!! | TTTTTTTTAATAACAGTCAA+TGG | + | chr2.2:54338986-54339005 | None:intergenic | 15.0% |
| !! | AATAAGAAGTGATAAAAACA+AGG | + | chr2.2:54338605-54338624 | None:intergenic | 20.0% |
| !! | ATAATTTCTTATGTGTAGTA+GGG | + | chr2.2:54338251-54338270 | None:intergenic | 20.0% |
| !! | ATGTAATATATCTTAGCATT+TGG | - | chr2.2:54336762-54336781 | MS.gene058201:intron | 20.0% |
| !! | CACTTATATGCTATAAAAAT+TGG | - | chr2.2:54336968-54336987 | MS.gene058201:intron | 20.0% |
| !! | GTAGGTGTAAATTAATATTA+AGG | + | chr2.2:54337857-54337876 | None:intergenic | 20.0% |
| !! | TATGGTAAAAGAATTAAGAA+CGG | - | chr2.2:54338455-54338474 | MS.gene058201:intron | 20.0% |
| !! | TGATTAAATCAAAGTAGATT+AGG | - | chr2.2:54338333-54338352 | MS.gene058201:intron | 20.0% |
| !! | TGTTAAAAAGGATAATGAAA+GGG | - | chr2.2:54339329-54339348 | MS.gene058201:intron | 20.0% |
| !! | TTATATATAGAAAGAAAGCA+AGG | + | chr2.2:54338191-54338210 | None:intergenic | 20.0% |
| !! | TTTCTCTTTCAAAAAACAAA+AGG | - | chr2.2:54338732-54338751 | MS.gene058201:intron | 20.0% |
| !!! | AAATCCTCTAAAAAAAATGT+AGG | + | chr2.2:54337791-54337810 | None:intergenic | 20.0% |
| !!! | AATGTTACACAGTTTTTTTA+GGG | + | chr2.2:54338859-54338878 | None:intergenic | 20.0% |
| !!! | CAAATGGTAATGAAAATTAA+AGG | - | chr2.2:54337471-54337490 | MS.gene058201:intron | 20.0% |
| !!! | CTCCATAATTTTTTTACATA+AGG | - | chr2.2:54338879-54338898 | MS.gene058201:intron | 20.0% |
| !!! | GTTCTTTTATTTCTTTTTGT+TGG | - | chr2.2:54339096-54339115 | MS.gene058201:intron | 20.0% |
| !!! | TAAATGTTGTTTTTCATCAT+AGG | + | chr2.2:54339217-54339236 | None:intergenic | 20.0% |
| !!! | TGTTGGAAATAACTTTTTTT+TGG | - | chr2.2:54339113-54339132 | MS.gene058201:intron | 20.0% |
| !!! | TTGTTTTTATCACTTCTTAT+TGG | - | chr2.2:54338604-54338623 | MS.gene058201:intron | 20.0% |
| !!! | TTTAGCATGAAGATATTTTT+GGG | - | chr2.2:54337980-54337999 | MS.gene058201:intron | 20.0% |
| !!! | TTTGATTTGTTTTGTTGAAT+AGG | - | chr2.2:54337170-54337189 | MS.gene058201:intron | 20.0% |
| !!! | TTTTAGCATGAAGATATTTT+TGG | - | chr2.2:54337979-54337998 | MS.gene058201:intron | 20.0% |
| ! | AAAAAAAAACAGAGGAAAAG+TGG | + | chr2.2:54339621-54339640 | None:intergenic | 25.0% |
| ! | AAATATCATTCCAACTTTAG+AGG | - | chr2.2:54336505-54336524 | MS.gene058201:CDS | 25.0% |
| ! | AAATTATAGTCAACATCTGT+GGG | - | chr2.2:54339137-54339156 | MS.gene058201:intron | 25.0% |
| ! | AAATTGCATACATTTCTATG+TGG | + | chr2.2:54336628-54336647 | None:intergenic | 25.0% |
| ! | AAGCAAATTAGTAGATCATA+AGG | - | chr2.2:54338799-54338818 | MS.gene058201:CDS | 25.0% |
| ! | AAGGTCACTAAAAAATCATA+TGG | - | chr2.2:54338751-54338770 | MS.gene058201:intron | 25.0% |
| ! | AAGTAGATTAGGTTCAAATT+AGG | - | chr2.2:54338344-54338363 | MS.gene058201:intron | 25.0% |
| ! | AATATCATTCCAACTTTAGA+GGG | - | chr2.2:54336506-54336525 | MS.gene058201:CDS | 25.0% |
| ! | ACAAAATGGCATAACAATAA+TGG | + | chr2.2:54336699-54336718 | None:intergenic | 25.0% |
| ! | ACATAGAAATGTATGCAATT+TGG | - | chr2.2:54336627-54336646 | MS.gene058201:intron | 25.0% |
| ! | AGAAAGCAAGGATTAATTAT+TGG | + | chr2.2:54338179-54338198 | None:intergenic | 25.0% |
| ! | AGGTCACTAAAAAATCATAT+GGG | - | chr2.2:54338752-54338771 | MS.gene058201:intron | 25.0% |
| ! | ATGGTAAAAGAATTAAGAAC+GGG | - | chr2.2:54338456-54338475 | MS.gene058201:intron | 25.0% |
| ! | ATTCTCATTTGACTAATTCT+AGG | + | chr2.2:54338375-54338394 | None:intergenic | 25.0% |
| ! | CATAATTTCTTATGTGTAGT+AGG | + | chr2.2:54338252-54338271 | None:intergenic | 25.0% |
| ! | CTACTACACATAAGAAATTA+TGG | - | chr2.2:54338250-54338269 | MS.gene058201:intron | 25.0% |
| ! | GTGTTAAAAAGGATAATGAA+AGG | - | chr2.2:54339328-54339347 | MS.gene058201:intron | 25.0% |
| ! | TAAATTATAGTCAACATCTG+TGG | - | chr2.2:54339136-54339155 | MS.gene058201:intron | 25.0% |
| ! | TAATTATATTATACGAGGAG+AGG | + | chr2.2:54336736-54336755 | None:intergenic | 25.0% |
| ! | TACAATGTACATGTGTATTT+AGG | + | chr2.2:54337819-54337838 | None:intergenic | 25.0% |
| ! | TATCACATTTATTCAGTCAA+TGG | + | chr2.2:54339012-54339031 | None:intergenic | 25.0% |
| ! | TCATTTATTTATTGGACACA+TGG | + | chr2.2:54337734-54337753 | None:intergenic | 25.0% |
| ! | TTCTCATTTGACTAATTCTA+GGG | + | chr2.2:54338374-54338393 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr2.2:54338617-54338636 | MS.gene058201:intron | 25.0% |
| ! | TTTCTAACCGACAATTTAAT+TGG | + | chr2.2:54338009-54338028 | None:intergenic | 25.0% |
| !! | AAAATATGTACCTGTAGTTT+TGG | + | chr2.2:54339534-54339553 | None:intergenic | 25.0% |
| !! | ACTAAAAGCTTTATAACCAT+TGG | + | chr2.2:54336386-54336405 | None:intergenic | 25.0% |
| !! | ATAGTCTTGAATTTATCTTG+TGG | - | chr2.2:54339029-54339048 | MS.gene058201:intron | 25.0% |
| !! | ATCCAAATGCATTTTAAATG+AGG | - | chr2.2:54338902-54338921 | MS.gene058201:intron | 25.0% |
| !! | GATTAAAAAAAAGAGTACGT+TGG | + | chr2.2:54337547-54337566 | None:intergenic | 25.0% |
| !!! | AGATAAGACGTTTTGATTTT+TGG | + | chr2.2:54336595-54336614 | None:intergenic | 25.0% |
| !!! | ATATCAAAGGCTTTTTCTTT+GGG | + | chr2.2:54339184-54339203 | None:intergenic | 25.0% |
| !!! | ATGACCTACATTTTTTTTAG+AGG | - | chr2.2:54337784-54337803 | MS.gene058201:intron | 25.0% |
| !!! | GAATGTTACACAGTTTTTTT+AGG | + | chr2.2:54338860-54338879 | None:intergenic | 25.0% |
| !!! | TAGGCTTTCTGAAATTATAT+TGG | - | chr2.2:54337618-54337637 | MS.gene058201:intron | 25.0% |
| !!! | TTGTTTTGTTGAATAGGTAA+AGG | - | chr2.2:54337176-54337195 | MS.gene058201:intron | 25.0% |
| AAAACAAAACAGATGAGTTG+AGG | + | chr2.2:54337266-54337285 | None:intergenic | 30.0% | |
| ACATTTCTATGTGGATAGAT+AGG | + | chr2.2:54336619-54336638 | None:intergenic | 30.0% | |
| AGAGAAGATGCTATAGTAAA+TGG | + | chr2.2:54337007-54337026 | None:intergenic | 30.0% | |
| AGAGGAAAAGTGGATAAATA+AGG | + | chr2.2:54339611-54339630 | None:intergenic | 30.0% | |
| AGTCAATGGTTGTTATATAG+TGG | + | chr2.2:54338972-54338991 | None:intergenic | 30.0% | |
| ATACACATGTACATTGTAGA+AGG | - | chr2.2:54337821-54337840 | MS.gene058201:intron | 30.0% | |
| CAAAAACAATGGAGAGAAAA+AGG | - | chr2.2:54338628-54338647 | MS.gene058201:intron | 30.0% | |
| CAAAAGCAAGATGAAAGATA+AGG | + | chr2.2:54337071-54337090 | None:intergenic | 30.0% | |
| CACTAAAAAATCATATGGGT+GGG | - | chr2.2:54338756-54338775 | MS.gene058201:intron | 30.0% | |
| TACACATGTACATTGTAGAA+GGG | - | chr2.2:54337822-54337841 | MS.gene058201:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr2.2:54338579-54338598 | None:intergenic | 30.0% | |
| TCACTAAAAAATCATATGGG+TGG | - | chr2.2:54338755-54338774 | MS.gene058201:intron | 30.0% | |
| TCTTGAATTTATCTTGTGGT+TGG | - | chr2.2:54339033-54339052 | MS.gene058201:intron | 30.0% | |
| TCTTGATTGCAATGTTCAAA+TGG | - | chr2.2:54337455-54337474 | MS.gene058201:intron | 30.0% | |
| TGGGAATCCAATTAAATTGT+CGG | - | chr2.2:54337999-54338018 | MS.gene058201:intron | 30.0% | |
| ! | AAACAAAACAGATGAGTTGA+GGG | + | chr2.2:54337265-54337284 | None:intergenic | 30.0% |
| ! | AAGCTTTTAGTCTCTTTTCT+TGG | - | chr2.2:54336395-54336414 | MS.gene058201:intron | 30.0% |
| ! | ATATATCTTAGCATTTGGTG+TGG | - | chr2.2:54336767-54336786 | MS.gene058201:intron | 30.0% |
| ! | CAATTGAAGTACTAAGTACA+TGG | + | chr2.2:54337579-54337598 | None:intergenic | 30.0% |
| ! | TATATTGGTAGTCTAGTTTC+TGG | - | chr2.2:54337633-54337652 | MS.gene058201:intron | 30.0% |
| ! | TGCCTCATTTAAAATGCATT+TGG | + | chr2.2:54338907-54338926 | None:intergenic | 30.0% |
| ! | TTTGTGTGGACATTTTTGAA+TGG | + | chr2.2:54336570-54336589 | None:intergenic | 30.0% |
| ! | TTTTCATCATAGGCTTACTT+TGG | + | chr2.2:54339207-54339226 | None:intergenic | 30.0% |
| !! | ATCTTTCATCTTGCTTTTGT+GGG | - | chr2.2:54337072-54337091 | MS.gene058201:intron | 30.0% |
| !! | CATTTTAATCTCTTCTAACG+TGG | - | chr2.2:54337416-54337435 | MS.gene058201:intron | 30.0% |
| !! | GATATCAAAGGCTTTTTCTT+TGG | + | chr2.2:54339185-54339204 | None:intergenic | 30.0% |
| !! | TATCTTTCATCTTGCTTTTG+TGG | - | chr2.2:54337071-54337090 | MS.gene058201:intron | 30.0% |
| !! | TGATGTTGATAATTACCTTG+TGG | + | chr2.2:54336902-54336921 | None:intergenic | 30.0% |
| !! | TTTGATTTTTGGACTTTGTG+TGG | + | chr2.2:54336584-54336603 | None:intergenic | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr2.2:54338700-54338719 | None:intergenic | 30.0% |
| !!! | ATTTCTTTTCCCTCTAAAGT+TGG | + | chr2.2:54336518-54336537 | None:intergenic | 30.0% |
| !!! | ATTTTTTGATTCAGCAGACT+GGG | - | chr2.2:54339353-54339372 | MS.gene058201:intron | 30.0% |
| AAAGTAGAGACAATGAAGAG+AGG | + | chr2.2:54336825-54336844 | None:intergenic | 35.0% | |
| AAGGAGATACAAGAATGACT+TGG | - | chr2.2:54338428-54338447 | MS.gene058201:intron | 35.0% | |
| AGGCTTACTTTGGATATCAA+AGG | + | chr2.2:54339197-54339216 | None:intergenic | 35.0% | |
| ATTGGACACATGGAAATGAA+AGG | + | chr2.2:54337724-54337743 | None:intergenic | 35.0% | |
| CAAAACAAAACAAGCCTAAC+TGG | - | chr2.2:54338093-54338112 | MS.gene058201:intron | 35.0% | |
| CTAGGAAAGAAGCTACAAAA+TGG | + | chr2.2:54336713-54336732 | None:intergenic | 35.0% | |
| CTCCTTTGAGTGACTTAAAA+GGG | + | chr2.2:54338414-54338433 | None:intergenic | 35.0% | |
| GGAATTTAATCTCTACAGCA+AGG | - | chr2.2:54339462-54339481 | MS.gene058201:intron | 35.0% | |
| GTACAAGTAATGTGCACAAT+TGG | + | chr2.2:54337525-54337544 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr2.2:54338695-54338714 | MS.gene058201:intron | 35.0% | |
| GTGAAAGAATTGTACGTTGA+GGG | - | chr2.2:54336309-54336328 | MS.gene058201:CDS | 35.0% | |
| GTTATGTACCTCAACGTTAT+TGG | + | chr2.2:54337238-54337257 | None:intergenic | 35.0% | |
| TATGTTGTGACATCCTCATA+AGG | + | chr2.2:54338049-54338068 | None:intergenic | 35.0% | |
| TCTCCTTTGAGTGACTTAAA+AGG | + | chr2.2:54338415-54338434 | None:intergenic | 35.0% | |
| TGTCTATCATACATGCATCT+AGG | - | chr2.2:54337599-54337618 | MS.gene058201:intron | 35.0% | |
| TGTTGAATAGGTAAAGGAGA+TGG | - | chr2.2:54337182-54337201 | MS.gene058201:intron | 35.0% | |
| TTGGACACATGGAAATGAAA+GGG | + | chr2.2:54337723-54337742 | None:intergenic | 35.0% | |
| ! | ATCTTCTCTTCGCTTGATTT+TGG | - | chr2.2:54337018-54337037 | MS.gene058201:intron | 35.0% |
| ! | TGTCGGTTAGAAAGTTCTAA+GGG | - | chr2.2:54338016-54338035 | MS.gene058201:intron | 35.0% |
| ! | TTGTCGGTTAGAAAGTTCTA+AGG | - | chr2.2:54338015-54338034 | MS.gene058201:intron | 35.0% |
| !! | ATCCCTTTTAAGTCACTCAA+AGG | - | chr2.2:54338409-54338428 | MS.gene058201:intron | 35.0% |
| !! | GAAAAAGCATTAGACTCTGT+TGG | + | chr2.2:54339296-54339315 | None:intergenic | 35.0% |
| !! | GTTGATAATTACCTTGTGGT+GGG | + | chr2.2:54336898-54336917 | None:intergenic | 35.0% |
| !! | TGTTGATAATTACCTTGTGG+TGG | + | chr2.2:54336899-54336918 | None:intergenic | 35.0% |
| !!! | CATTTTTTGATTCAGCAGAC+TGG | - | chr2.2:54339352-54339371 | MS.gene058201:intron | 35.0% |
| AATCGATGGCGATATCCTAA+CGG | - | chr2.2:54336345-54336364 | MS.gene058201:intron | 40.0% | |
| ATATTATACGAGGAGAGGCT+AGG | + | chr2.2:54336731-54336750 | None:intergenic | 40.0% | |
| ATGTCGTAGTTTATGCCGTT+AGG | + | chr2.2:54336363-54336382 | None:intergenic | 40.0% | |
| CGTGAAAGAATTGTACGTTG+AGG | - | chr2.2:54336308-54336327 | MS.gene058201:CDS | 40.0% | |
| GCATAAACTACGACATCCAA+TGG | - | chr2.2:54336367-54336386 | MS.gene058201:intron | 40.0% | |
| GCTCATGTTTGGGAGAAATA+AGG | + | chr2.2:54338148-54338167 | None:intergenic | 40.0% | |
| TGGACACATGGAAATGAAAG+GGG | + | chr2.2:54337722-54337741 | None:intergenic | 40.0% | |
| TGTGACATCCTCATAAGGTA+GGG | + | chr2.2:54338044-54338063 | None:intergenic | 40.0% | |
| TTATGCTGCCAATAACGTTG+AGG | - | chr2.2:54337227-54337246 | MS.gene058201:intron | 40.0% | |
| TTCTTATGTGTAGTAGGGAG+AGG | + | chr2.2:54338246-54338265 | None:intergenic | 40.0% | |
| TTGTGACATCCTCATAAGGT+AGG | + | chr2.2:54338045-54338064 | None:intergenic | 40.0% | |
| ! | AAACAGATGAGTTGAGGGTT+AGG | + | chr2.2:54337260-54337279 | None:intergenic | 40.0% |
| ! | GAGATACAAGAATGACTTGG+TGG | - | chr2.2:54338431-54338450 | MS.gene058201:intron | 40.0% |
| ! | TGTGGACATTTTTGAATGGC+TGG | + | chr2.2:54336566-54336585 | None:intergenic | 40.0% |
| !! | GTCGGTTAGAAAGTTCTAAG+GGG | - | chr2.2:54338017-54338036 | MS.gene058201:intron | 40.0% |
| AAACAAGCCTAACTGGCTGT+AGG | - | chr2.2:54338100-54338119 | MS.gene058201:intron | 45.0% | |
| AACAAGCCTAACTGGCTGTA+GGG | - | chr2.2:54338101-54338120 | MS.gene058201:intron | 45.0% | |
| ACATCTGTGGGCAAGAAGTA+TGG | - | chr2.2:54339149-54339168 | MS.gene058201:intron | 45.0% | |
| ATGTGCATGCAGGTCTTCTT+GGG | + | chr2.2:54339695-54339714 | None:intergenic | 45.0% | |
| GAAGAGAGGTTTGAGTGAGA+AGG | + | chr2.2:54336811-54336830 | None:intergenic | 45.0% | |
| GGAGAGAAAAAGGAAGAGAG+AGG | - | chr2.2:54338638-54338657 | MS.gene058201:intron | 45.0% | |
| GGCATGAGAAGCTCATGTTT+GGG | + | chr2.2:54338158-54338177 | None:intergenic | 45.0% | |
| GTATGAGATGGACCAATCGA+TGG | - | chr2.2:54336331-54336350 | MS.gene058201:CDS | 45.0% | |
| GTTAGGATATCGCCATCGAT+TGG | + | chr2.2:54336346-54336365 | None:intergenic | 45.0% | |
| TAATCTCTACAGCAAGGTGC+TGG | - | chr2.2:54339468-54339487 | MS.gene058201:intron | 45.0% | |
| TGGCATGAGAAGCTCATGTT+TGG | + | chr2.2:54338159-54338178 | None:intergenic | 45.0% | |
| ! | TGTACGTTGAGGGTATGAGA+TGG | - | chr2.2:54336319-54336338 | MS.gene058201:CDS | 45.0% |
| !! | CAAGAATGACTTGGTGGCTA+TGG | - | chr2.2:54338437-54338456 | MS.gene058201:intron | 45.0% |
| !! | AAAAAAAAAAAATAATAAGT+AGG | + | chr2.2:54337875-54337894 | None:intergenic | 5.0% |
| !! | TTATAAAATCATTTATTTAT+TGG | + | chr2.2:54337742-54337761 | None:intergenic | 5.0% |
| !!! | TATTATTTTTTTTTTTTGAA+GGG | - | chr2.2:54337878-54337897 | MS.gene058201:intron | 5.0% |
| !!! | TTATTATTTTTTTTTTTTGA+AGG | - | chr2.2:54337877-54337896 | MS.gene058201:intron | 5.0% |
| AGAAGACCTGCATGCACATC+TGG | - | chr2.2:54339696-54339715 | MS.gene058201:CDS | 50.0% | |
| AGCAGACTGGGCATTATGCA+AGG | - | chr2.2:54339365-54339384 | MS.gene058201:intron | 50.0% | |
| GATGTGCATGCAGGTCTTCT+TGG | + | chr2.2:54339696-54339715 | None:intergenic | 50.0% | |
| TAAGGGGTCCCTACCTTATG+AGG | - | chr2.2:54338033-54338052 | MS.gene058201:intron | 50.0% | |
| TGACAACCCTACAGCCAGTT+AGG | + | chr2.2:54338110-54338129 | None:intergenic | 50.0% | |
| TGTGCATGCAGGTCTTCTTG+GGG | + | chr2.2:54339694-54339713 | None:intergenic | 50.0% | |
| ! | ATTACCTTGTGGTGGGAGCA+AGG | + | chr2.2:54336891-54336910 | None:intergenic | 50.0% |
| ! | CTGTGGGCAAGAAGTATGGT+GGG | - | chr2.2:54339153-54339172 | MS.gene058201:intron | 50.0% |
| ! | TCTGTGGGCAAGAAGTATGG+TGG | - | chr2.2:54339152-54339171 | MS.gene058201:intron | 50.0% |
| !!! | TACCTGTAGTTTTGGCCGCA+GGG | + | chr2.2:54339526-54339545 | None:intergenic | 50.0% |
| GTGCATGCAGGTCTTCTTGG+GGG | + | chr2.2:54339693-54339712 | None:intergenic | 55.0% | |
| TCTACCTTGCTCCCACCACA+AGG | - | chr2.2:54336884-54336903 | MS.gene058201:intron | 55.0% | |
| ! | TTTTGGCCGCAGGGTCTCTA+CGG | + | chr2.2:54339517-54339536 | None:intergenic | 55.0% |
| !!! | GTACCTGTAGTTTTGGCCGC+AGG | + | chr2.2:54339527-54339546 | None:intergenic | 55.0% |
| CTTGGGGGAAGCTGCTGATG+TGG | + | chr2.2:54339678-54339697 | None:intergenic | 60.0% | |
| GACCCTGCGGCCAAAACTAC+AGG | - | chr2.2:54339521-54339540 | MS.gene058201:intron | 60.0% | |
| CAGCAGCCGTAGAGACCCTG+CGG | - | chr2.2:54339508-54339527 | MS.gene058201:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 54336297 | 54339722 | 54336297 | ID=MS.gene058201 |
| chr2.2 | mRNA | 54336297 | 54339722 | 54336297 | ID=MS.gene058201.t1;Parent=MS.gene058201 |
| chr2.2 | exon | 54339631 | 54339722 | 54339631 | ID=MS.gene058201.t1.exon1;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54339631 | 54339722 | 54339631 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| chr2.2 | exon | 54338930 | 54339002 | 54338930 | ID=MS.gene058201.t1.exon2;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54338930 | 54339002 | 54338930 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| chr2.2 | exon | 54338771 | 54338827 | 54338771 | ID=MS.gene058201.t1.exon3;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54338771 | 54338827 | 54338771 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| chr2.2 | exon | 54336811 | 54336873 | 54336811 | ID=MS.gene058201.t1.exon4;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54336811 | 54336873 | 54336811 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| chr2.2 | exon | 54336633 | 54336680 | 54336633 | ID=MS.gene058201.t1.exon5;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54336633 | 54336680 | 54336633 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| chr2.2 | exon | 54336477 | 54336539 | 54336477 | ID=MS.gene058201.t1.exon6;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54336477 | 54336539 | 54336477 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| chr2.2 | exon | 54336297 | 54336350 | 54336297 | ID=MS.gene058201.t1.exon7;Parent=MS.gene058201.t1 |
| chr2.2 | CDS | 54336297 | 54336350 | 54336297 | ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1 |
| Gene Sequence |
| Protein sequence |
