AlfalfaGEDB | MS.gene058201

M. sativa cultivar XinJiangDaYe / MS.gene058201

KEGG: -
GO: -
PFAM: PF04667.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058201.t1	KEH37161.1	89.1	119	11	1	33	149	22	140	8.00E-51	209.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058201.t1	A0A072V6A6	89.1	119	11	1	33	149	22	140	5.8e-51	209.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050642	MS.gene058201	0.801155	1.03E-48	-1.69E-46
MS.gene051633	MS.gene058201	0.800716	1.27E-48	-1.69E-46
MS.gene051662	MS.gene058201	0.828004	1.14E-54	-1.69E-46
MS.gene052176	MS.gene058201	0.803534	3.33E-49	-1.69E-46
MS.gene052286	MS.gene058201	0.80057	1.35E-48	-1.69E-46
MS.gene052302	MS.gene058201	0.803908	2.79E-49	-1.69E-46
MS.gene052309	MS.gene058201	-0.817332	3.48E-52	-1.69E-46
MS.gene053836	MS.gene058201	0.800955	1.13E-48	-1.69E-46
MS.gene056069	MS.gene058201	-0.807265	5.50E-50	-1.69E-46
MS.gene057439	MS.gene058201	0.826879	2.13E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058201.t1	MTR_2g034750	89.076	119	11	1	33	149	22	140	1.43e-73	216
MS.gene058201.t1	MTR_2g034750	97.872	94	2	0	56	149	65	158	9.37e-66	197
MS.gene058201.t1	MTR_2g034750	67.516	157	27	5	12	149	5	156	1.07e-65	197
MS.gene058201.t1	MTR_2g034750	96.429	56	2	0	56	111	65	120	2.84e-34	117
MS.gene058201.t1	MTR_5g041790	63.889	72	22	2	74	145	40	107	1.51e-21	84.7
MS.gene058201.t1	MTR_5g041790	66.102	59	17	1	74	132	40	95	2.21e-19	78.2
MS.gene058201.t1	MTR_2g064890	58.571	70	26	1	80	149	36	102	4.25e-19	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058201.t1	AT4G16146	65.476	84	29	0	66	149	10	93	7.56e-36	120
MS.gene058201.t1	AT1G69510	61.842	76	26	1	74	149	26	98	2.84e-23	89.0
MS.gene058201.t1	AT1G69510	61.842	76	26	1	74	149	26	98	2.84e-23	89.0
MS.gene058201.t1	AT1G69510	61.842	76	26	1	74	149	26	98	2.84e-23	89.0
MS.gene058201.t1	AT5G64130	50.000	94	41	3	56	147	7	96	1.38e-19	79.0
MS.gene058201.t1	AT5G64130	39.496	119	41	4	56	147	7	121	3.82e-14	65.5

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Find 31 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGTACCTGTAGTTT+TGG	0.291948	2.2:+54336466	None:intergenic
AAATTATAGTCAACATCTGT+GGG	0.528268	2.2:-54336860	MS.gene058201:intron
AATCAACCAGATGTGCATGC+AGG	0.569567	2.2:+54336295	None:intergenic
AATCGATGGCGATATCCTAA+CGG	0.638732	2.2:-54339652	MS.gene058201:CDS
ACATCTGTGGGCAAGAAGTA+TGG	0.427721	2.2:-54336848	MS.gene058201:CDS
AGAAGACCTGCATGCACATC+TGG	0.388554	2.2:-54336301	MS.gene058201:CDS
AGCAGACTGGGCATTATGCA+AGG	0.588087	2.2:-54336632	MS.gene058201:intron
AGGCTTACTTTGGATATCAA+AGG	0.525503	2.2:+54336803	None:intergenic
ATCTTCTCTTCGCTTGATTT+TGG	0.271225	2.2:-54338979	MS.gene058201:CDS
ATGTCGTAGTTTATGCCGTT+AGG	0.501608	2.2:+54339637	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAAACAGATGAGTTG+AGG	+	chr2.2:54337266-54337285	None:intergenic	30.0%
ACATTTCTATGTGGATAGAT+AGG	+	chr2.2:54336619-54336638	None:intergenic	30.0%
AGAGAAGATGCTATAGTAAA+TGG	+	chr2.2:54337007-54337026	None:intergenic	30.0%
AGAGGAAAAGTGGATAAATA+AGG	+	chr2.2:54339611-54339630	None:intergenic	30.0%
AGTCAATGGTTGTTATATAG+TGG	+	chr2.2:54338972-54338991	None:intergenic	30.0%
ATACACATGTACATTGTAGA+AGG	-	chr2.2:54337821-54337840	MS.gene058201:intron	30.0%
CAAAAACAATGGAGAGAAAA+AGG	-	chr2.2:54338628-54338647	MS.gene058201:intron	30.0%
CAAAAGCAAGATGAAAGATA+AGG	+	chr2.2:54337071-54337090	None:intergenic	30.0%
CACTAAAAAATCATATGGGT+GGG	-	chr2.2:54338756-54338775	MS.gene058201:intron	30.0%
TACACATGTACATTGTAGAA+GGG	-	chr2.2:54337822-54337841	MS.gene058201:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	54336297	54339722	54336297	ID=MS.gene058201
chr2.2	mRNA	54336297	54339722	54336297	ID=MS.gene058201.t1;Parent=MS.gene058201
chr2.2	exon	54339631	54339722	54339631	ID=MS.gene058201.t1.exon1;Parent=MS.gene058201.t1
chr2.2	CDS	54339631	54339722	54339631	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1
chr2.2	exon	54338930	54339002	54338930	ID=MS.gene058201.t1.exon2;Parent=MS.gene058201.t1
chr2.2	CDS	54338930	54339002	54338930	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1
chr2.2	exon	54338771	54338827	54338771	ID=MS.gene058201.t1.exon3;Parent=MS.gene058201.t1
chr2.2	CDS	54338771	54338827	54338771	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1
chr2.2	exon	54336811	54336873	54336811	ID=MS.gene058201.t1.exon4;Parent=MS.gene058201.t1
chr2.2	CDS	54336811	54336873	54336811	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1
chr2.2	exon	54336633	54336680	54336633	ID=MS.gene058201.t1.exon5;Parent=MS.gene058201.t1
chr2.2	CDS	54336633	54336680	54336633	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1
chr2.2	exon	54336477	54336539	54336477	ID=MS.gene058201.t1.exon6;Parent=MS.gene058201.t1
chr2.2	CDS	54336477	54336539	54336477	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1
chr2.2	exon	54336297	54336350	54336297	ID=MS.gene058201.t1.exon7;Parent=MS.gene058201.t1
chr2.2	CDS	54336297	54336350	54336297	ID=cds.MS.gene058201.t1;Parent=MS.gene058201.t1

Gene Sequence

>MS.gene058201

ATGATAGGTAACGTGAAAGAATTGTACGTTGAGGGTATGAGATGGACCAATCGATGGCGATATCCTAACGGCATAAACTACGACATCCAATGGTTATAAAGCTTTTAGTCTCTTTTCTTGGCTTTTTCAACTTTGAATTTTAAACACACAACATATTATAGTATATTAATAATAATTCAATTCAATATGGTCATACTTAATTAATTGAAAATATCATTCCAACTTTAGAGGGAAAAGAAATCTCAAAATTAAAAAATTATGCTAAACCAGCCATTCAAAAATGTCCACACAAAGTCCAAAAATCAAAACGTCTTATCTACCTATCTATCCACATAGAAATGTATGCAATTTGGATATTTGATATATAAAATCCAAATTTAAATGATTCATATTATTATACCATTATTGTTATGCCATTTTGTAGCTTCTTTCCTAGCCTCTCCTCGTATAATATAATTATTATAAATGTAATATATCTTAGCATTTGGTGTGGATGTATATTCTTATCTAACCTTCTCACTCAAACCTCTCTTCATTGTCTCTACTTTTTATCTTTTTTCTTTGGATTTTATCTCTTCTCTTGCATCTCTACCTTGCTCCCACCACAAGGTAATTATCAACATCACACTTTTCTTTTTCATTTTTTCCTATTTTATTTTCTATGTTGTTTTCACTTATATGCTATAAAAATTGGATATGCTTCTATACCATTTACTATAGCATCTTCTCTTCGCTTGATTTTGGAGAATTCTTTGCTCTCTCTTTCTCTAACCTTATCTTTCATCTTGCTTTTGTGGGTGAGTCTTCAATTTGCACTCAAATTAATGCTTACATTTTATAAATCAATTGATTAATCTTCATTAAATGGAAAGTTTTGATTTGTTTTGTTGAATAGGTAAAGGAGATGGCAGAGTTTAACAGAGAAGAATATTATGCTGCCAATAACGTTGAGGTACATAACCTAACCCTCAACTCATCTGTTTTGTTTTTCTAAAAATAATATATTTATTTAACCATATACATGAAATATTTTTCACATTTCACCTTATATTTTCACATTAAATATACATCCATTATATATTGTACAACTAAAAAGAAATGACGAAACTACAATAAGCACATTTTAATCTCTTCTAACGTGGCGAACTAATGTTCAAATCTTGATTGCAATGTTCAAATGGTAATGAAAATTAAAGGAGAATAAGATACGTGCACATGTGAAATTCCAATTGTGCACATTACTTGTACCAACGTACTCTTTTTTTTAATCATGTTTGTACCATGTACTTAGTACTTCAATTGTGTCTATCATACATGCATCTAGGCTTTCTGAAATTATATTGGTAGTCTAGTTTCTGGTAGCAGTCATATCATACAAATTGTAGTAAAATAGAATAGAATATTGTGTGAATTCACGTTTGACCCCTTTCATTTCCATGTGTCCAATAAATAAATGATTTTATAATTTTTACAATTGCTCATTATTCATGACCTACATTTTTTTTAGAGGATTTCATGACCTAAATACACATGTACATTGTAGAAGGGCATACATATCCTTAATATTAATTTACACCTACTTATTATTTTTTTTTTTTGAAGGGATTTATACTTACTTATATGTACAGCTTTCAAAATAAGTATATAAAGCATTTTTAAAATTAAGGAAAAAGGATGAGAGATTTTAGCATGAAGATATTTTTGGGAATCCAATTAAATTGTCGGTTAGAAAGTTCTAAGGGGTCCCTACCTTATGAGGATGTCACAACATAGTTAACAAAACAAAATTCACTATGCAAAACAAAACAAGCCTAACTGGCTGTAGGGTTGTCATACAAATCATGTGAACCTTATTTCTCCCAAACATGAGCTTCTCATGCCAATAATTAATCCTTGCTTTCTTTCTATATATAAAAAAAGAATATAATTTAGATTTTCTAGAATATCCTCTCCCTACTACACATAAGAAATTATGGTTTTCTTTTCTTTCTCATGACAGTTTTAAGTGACATATTCTTTAGAATATACTAGTAATTTGATTAAATCAAAGTAGATTAGGTTCAAATTAGGTTAACCCTAGAATTAGTCAAATGAGAATTTTATATTTCAATCATCCCTTTTAAGTCACTCAAAGGAGATACAAGAATGACTTGGTGGCTATGGTAAAAGAATTAAGAACGGGAGTAATATAGATATCAACGACTCGATCTACATCGTTAACATAAAAACTAATAATACTAACATTTGTCGTTTCAAAAAGAGTAATGATATTTTGACATCCATTTGATGACAACTTTGTTGACAACCTTGTTTTTATCACTTCTTATTGGTCAAAAACAATGGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAGTGGTTGTCAAAATATCATTTCTCTTTCAAAAAACAAAAGGTCACTAAAAAATCATATGGGTGGGTGTAGACTACTTTCAAGAAAAAGCAAATTAGTAGATCATAAGGACATAGTCTTAGTTGACAACTTTGCAATAATTTTCCCTAAAAAAACTGTGTAACATTCTCCATAATTTTTTTACATAAGGATCCAAATGCATTTTAAATGAGGCAAAAAAATCATCTTTACTTGCATTAAAAATGTGATTATCAAAACCACTATATAACAACCATTGACTGTTATTAAAAAAAAAAACCATTGACTGAATAAATGTGATAGTCTTGAATTTATCTTGTGGTTGGTGAGATTTTACCCTAACTTTTATAATACTGAATAAAATATGTTCTTTTATTTCTTTTTGTTGGAAATAACTTTTTTTTGGTAAATTATAGTCAACATCTGTGGGCAAGAAGTATGGTGGGCTTGTCCCAAAGAAAAAGCCTTTGATATCCAAAGTAAGCCTATGATGAAAAACAACATTTATTTATACAACAATTGAGTAATAATTCATCAATGTTTTACTTTCTTGTTAACAAGTTCCAACAGAGTCTAATGCTTTTTCCATTTTTTTTTTGTGTTAAAAAGGATAATGAAAGGGCATTTTTTGATTCAGCAGACTGGGCATTATGCAAGGTATTTTTGAATTTTATATTAAATAGTAAAACATATAACAAAAATTCATCTTATAATATAGATATATAATTTGTTGGAATTTAATCTCTACAGCAAGGTGCTGGAATGAATCAACAATCTACAGCAGCCGTAGAGACCCTGCGGCCAAAACTACAGGTACATATTTTAAAATATTATTAGCATTTTTTTAAAAAAGTATTATTAGAATTTATTTATTTTGTCCTTATTTATCCACTTTTCCTCTGTTTTTTTTTTTATTTTTATTTTTATTTTTTAAAATAGAGAACTCCACATCAGCAGCTTCCCCCAAGAAGACCTGCATGCACATCTGGTTGA

Protein sequence

>MS.gene058201.t1

MIGNVKELYVEGMRWTNRWRYPNGINYDIQCIFSSLDFGEFFALSFSNLIFHLAFVKEMAEFNREEYYAANNVESTSVGKKYGGLVPKKKPLISKDNERAFFDSADWALCKQGAGMNQQSTAAVETLRPKLQRTPHQQLPPRRPACTSG