Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08197.t1 | XP_003624635.1 | 99.6 | 1118 | 5 | 0 | 1 | 1118 | 1 | 1118 | 0.00E+00 | 2155.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08197.t1 | Q8BKC5 | 36.3 | 1111 | 657 | 16 | 28 | 1118 | 17 | 1096 | 9.0e-188 | 659.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08197.t1 | A5XEM2 | 99.6 | 1118 | 5 | 0 | 1 | 1118 | 1 | 1118 | 0.0e+00 | 2155.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059007 | MS.gene08197 | 0.82282 | 1.93E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08197.t1 | MTR_7g085820 | 99.642 | 1118 | 4 | 0 | 1 | 1118 | 1 | 1118 | 0.0 | 2290 |
| MS.gene08197.t1 | MTR_8g085950 | 79.784 | 1113 | 220 | 3 | 7 | 1118 | 9 | 1117 | 0.0 | 1759 |
| MS.gene08197.t1 | MTR_2g006750 | 25.819 | 1069 | 698 | 25 | 19 | 1065 | 2 | 997 | 5.18e-88 | 307 |
| MS.gene08197.t1 | MTR_3g064930 | 27.202 | 1022 | 651 | 36 | 19 | 1013 | 77 | 1032 | 2.44e-73 | 264 |
| MS.gene08197.t1 | MTR_3g064980 | 25.353 | 1061 | 726 | 25 | 43 | 1087 | 103 | 1113 | 4.46e-73 | 265 |
| MS.gene08197.t1 | MTR_3g064910 | 45.532 | 235 | 126 | 1 | 884 | 1118 | 529 | 761 | 8.54e-62 | 226 |
| MS.gene08197.t1 | MTR_3g064910 | 28.835 | 541 | 347 | 18 | 37 | 552 | 48 | 575 | 1.74e-46 | 180 |
| MS.gene08197.t1 | MTR_3g064940 | 24.512 | 922 | 599 | 27 | 25 | 909 | 64 | 925 | 9.54e-43 | 169 |
| MS.gene08197.t1 | MTR_3g065010 | 24.554 | 896 | 577 | 22 | 38 | 911 | 103 | 921 | 1.16e-42 | 169 |
| MS.gene08197.t1 | MTR_7g098920 | 59.677 | 124 | 16 | 3 | 893 | 1012 | 6 | 99 | 5.41e-36 | 133 |
| MS.gene08197.t1 | MTR_3g064935 | 44.898 | 98 | 53 | 1 | 990 | 1087 | 38 | 134 | 1.15e-20 | 90.1 |
| MS.gene08197.t1 | MTR_8g099855 | 37.500 | 144 | 72 | 3 | 945 | 1087 | 258 | 384 | 4.01e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08197.t1 | AT5G19820 | 74.373 | 1116 | 280 | 4 | 4 | 1118 | 6 | 1116 | 0.0 | 1713 |
| MS.gene08197.t1 | AT4G27640 | 24.748 | 1091 | 745 | 22 | 22 | 1095 | 5 | 1036 | 1.73e-82 | 291 |
Find 282 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTCTTTCATGCTTTC+TGG | -0.040025 | 7.3:-22858929 | None:intergenic |
| GTGGACATGGTGCGTGTTTC+GGG | 0.106441 | 7.3:-22852163 | None:intergenic |
| TGTAAAGCTTCCACCAAATT+TGG | 0.127943 | 7.3:-22857896 | None:intergenic |
| TCTTCTCAGGCAGCTGTTTA+TGG | 0.130988 | 7.3:+22860210 | MS.gene08197:intron |
| TGATTATATAATTCCAAATT+TGG | 0.146239 | 7.3:+22857883 | MS.gene08197:CDS |
| CTTCATGGAAGTAAAATTTA+AGG | 0.147973 | 7.3:-22857653 | None:intergenic |
| GTGAGAGAGTTTGAGGATTA+AGG | 0.166281 | 7.3:-22852119 | None:intergenic |
| CATTTGTAATATTAGGTTTC+AGG | 0.184402 | 7.3:+22853371 | MS.gene08197:intron |
| AAATAAGGTACTAAAATATC+TGG | 0.209428 | 7.3:-22855130 | None:intergenic |
| TTATGTTGCTACAGATATTA+TGG | 0.209828 | 7.3:+22860034 | MS.gene08197:intron |
| GGTGGACATGGTGCGTGTTT+CGG | 0.228644 | 7.3:-22852164 | None:intergenic |
| TGAATTGCTGCCAACTTATT+TGG | 0.239895 | 7.3:+22853851 | MS.gene08197:CDS |
| GGGCAATTGTCCACAGATTT+GGG | 0.246478 | 7.3:+22854289 | MS.gene08197:CDS |
| ATGGTGCGTGTTTCGGGGTT+AGG | 0.249043 | 7.3:-22852157 | None:intergenic |
| TGGGCAATTGTCCACAGATT+TGG | 0.253832 | 7.3:+22854288 | MS.gene08197:CDS |
| TCTCTGATGACCTCGCTTCT+TGG | 0.257887 | 7.3:+22852365 | MS.gene08197:CDS |
| GCGCAATTGGCGCATTATAT+TGG | 0.268215 | 7.3:+22852466 | MS.gene08197:CDS |
| GGACATGAGGTTTGTGATTA+GGG | 0.272045 | 7.3:-22852029 | None:intergenic |
| AGCATCAAAGTCCTCTTCTT+TGG | 0.274091 | 7.3:-22858956 | None:intergenic |
| GAGGCGAGAGAGCGTGCTCC+TGG | 0.277486 | 7.3:+22853621 | MS.gene08197:CDS |
| TTGACTGAGGCATTGAATTC+TGG | 0.283347 | 7.3:+22853420 | MS.gene08197:CDS |
| GCAGGTGATGACAAAGAATT+TGG | 0.302259 | 7.3:+22854189 | MS.gene08197:intron |
| CTGCCTTCCTAACTTCTTCA+TGG | 0.303161 | 7.3:-22857668 | None:intergenic |
| CTAAGTTGCTTGCCTATAAA+AGG | 0.312335 | 7.3:+22861433 | MS.gene08197:CDS |
| CTCACAATCCCATCCAAATA+AGG | 0.313213 | 7.3:-22855145 | None:intergenic |
| CTTCTCAGGCAGCTGTTTAT+GGG | 0.313525 | 7.3:+22860211 | MS.gene08197:intron |
| GTTAGGAAGGCAGCAGCTTC+AGG | 0.319059 | 7.3:+22857678 | MS.gene08197:CDS |
| GCACAAATGGCTCTAATTCT+AGG | 0.322349 | 7.3:+22851983 | MS.gene08197:CDS |
| TTTACTTCCATGAAGAAGTT+AGG | 0.325716 | 7.3:+22857661 | MS.gene08197:CDS |
| TGGAAAGATATTGATTGTTA+TGG | 0.326132 | 7.3:-22861662 | None:intergenic |
| TGCTAGATTGGCGATTGCTT+GGG | 0.326637 | 7.3:+22859128 | MS.gene08197:intron |
| GAGTTTGAGGATTAAGGAAT+CGG | 0.328747 | 7.3:-22852113 | None:intergenic |
| TGGTGCGTGTTTCGGGGTTA+GGG | 0.332020 | 7.3:-22852156 | None:intergenic |
| GGTTATTTATCTCAGGTATC+AGG | 0.333202 | 7.3:+22858835 | MS.gene08197:intron |
| AGATCAGATAAAGAACTTAT+AGG | 0.333704 | 7.3:+22861639 | MS.gene08197:intron |
| GCCCACCGCACCCGAGGGTT+TGG | 0.335815 | 7.3:-22854250 | None:intergenic |
| AGATAGACTTTCAATTGCTT+TGG | 0.339365 | 7.3:+22853800 | MS.gene08197:CDS |
| CCTGTCACGGTCGGATGAAT+TGG | 0.340721 | 7.3:-22852617 | None:intergenic |
| TTGGGAACGTTGGTCGTTGA+TGG | 0.340981 | 7.3:-22852053 | None:intergenic |
| TTCCAATGATGCTAGGCTTC+AGG | 0.345498 | 7.3:+22852423 | MS.gene08197:CDS |
| CAAACTTCTTGTACTCCTTC+AGG | 0.347009 | 7.3:+22855168 | MS.gene08197:CDS |
| CAGGCAGCTGTTTATGGGGT+TGG | 0.353036 | 7.3:+22860216 | MS.gene08197:intron |
| CGGAGAGTGGATTGAGTTGA+AGG | 0.356862 | 7.3:-22852250 | None:intergenic |
| AGATTTGGGGCCAGACTTGC+AGG | 0.357142 | 7.3:+22854303 | MS.gene08197:CDS |
| GATAGACTTTCAATTGCTTT+GGG | 0.359150 | 7.3:+22853801 | MS.gene08197:CDS |
| CTCCTGAAGCCTAGCATCAT+TGG | 0.367008 | 7.3:-22852425 | None:intergenic |
| GAACTTCTCATTGAGCTTGC+TGG | 0.367665 | 7.3:+22853471 | MS.gene08197:CDS |
| AACTTCTCATTGAGCTTGCT+GGG | 0.371868 | 7.3:+22853472 | MS.gene08197:CDS |
| GATAATGCTGTTTCAGCTCT+TGG | 0.372944 | 7.3:+22860561 | MS.gene08197:CDS |
| GTTGGTGTCTGTGCCGAGTT+TGG | 0.373481 | 7.3:+22860234 | MS.gene08197:CDS |
| GTTGCTTGTGTTCGCGCAAT+TGG | 0.377292 | 7.3:+22852453 | MS.gene08197:CDS |
| TGGATTTGATTGGTTCTTGA+TGG | 0.378559 | 7.3:-22852294 | None:intergenic |
| TTCATGCTTTCTGGATGAAC+TGG | 0.379901 | 7.3:-22858920 | None:intergenic |
| TTTGCTGAAGACAACAGTTC+TGG | 0.380717 | 7.3:-22857800 | None:intergenic |
| CGGGGTTAGGGGAAGTGTGG+AGG | 0.380917 | 7.3:-22852144 | None:intergenic |
| CGATCAAAACCAGGCACAAA+TGG | 0.382121 | 7.3:+22851970 | MS.gene08197:CDS |
| TTATGCTATCACGGTGGAAC+TGG | 0.382701 | 7.3:-22860593 | None:intergenic |
| GGAGGAGGTGAGAGAGTTTG+AGG | 0.383052 | 7.3:-22852126 | None:intergenic |
| TGGACATGAGGTTTGTGATT+AGG | 0.384621 | 7.3:-22852030 | None:intergenic |
| TGGGCGGCTATAAATGCAAT+TGG | 0.394396 | 7.3:+22854268 | MS.gene08197:CDS |
| ATATCACCACTTAGTGCTTC+CGG | 0.396365 | 7.3:+22854330 | MS.gene08197:CDS |
| CTGTTGGAAAAGAGAAGTTC+AGG | 0.396414 | 7.3:+22855934 | MS.gene08197:CDS |
| ATTATGTGCGGGGACTGATT+TGG | 0.397041 | 7.3:+22861816 | MS.gene08197:CDS |
| TGATATTTATCCTGCAAGTC+TGG | 0.398002 | 7.3:-22854313 | None:intergenic |
| GAAGCTATGCGACACCGTTT+CGG | 0.399962 | 7.3:+22852324 | MS.gene08197:CDS |
| AGCAATGGAGTGTATTAGTT+TGG | 0.400859 | 7.3:+22855902 | MS.gene08197:CDS |
| TCCAAAACAATTAGGATGAT+AGG | 0.406142 | 7.3:-22861966 | None:intergenic |
| GTCACTGCAACAATCTCAAC+TGG | 0.407046 | 7.3:+22856145 | MS.gene08197:CDS |
| GAGTAGACAATTGAGGAAGT+AGG | 0.408750 | 7.3:-22852495 | None:intergenic |
| ACTGTTGTCTTCAGCAAAAT+CGG | 0.411583 | 7.3:+22857805 | MS.gene08197:CDS |
| GCATGACCTTCTTTGTTCAA+TGG | 0.413646 | 7.3:+22861480 | MS.gene08197:CDS |
| AGTAGACAATTGAGGAAGTA+GGG | 0.415176 | 7.3:-22852494 | None:intergenic |
| GTGTATTAGTTTGGTAGGTA+TGG | 0.417445 | 7.3:+22855911 | MS.gene08197:CDS |
| CTAGGCTTTGCAAGTGCCTC+GGG | 0.424997 | 7.3:+22856337 | MS.gene08197:CDS |
| GAGACTAGTAACTACGGATT+TGG | 0.426002 | 7.3:+22853765 | MS.gene08197:CDS |
| CGCACCCGAGGGTTTGGATC+AGG | 0.426653 | 7.3:-22854244 | None:intergenic |
| GGTTGCAGGTTGTTCCAGCC+TGG | 0.427510 | 7.3:+22861410 | MS.gene08197:intron |
| GGTTAGGGGAAGTGTGGAGG+AGG | 0.428933 | 7.3:-22852141 | None:intergenic |
| GAAATTTGTGCAAGCATGTT+GGG | 0.429694 | 7.3:+22858018 | MS.gene08197:CDS |
| TTTGGAGCATGTATTATCAA+TGG | 0.431536 | 7.3:+22854207 | MS.gene08197:CDS |
| TATGTTATCAGGCGTGGGCT+AGG | 0.433961 | 7.3:+22856319 | MS.gene08197:intron |
| TTAGTGCTTCCGGCATTAGC+TGG | 0.434177 | 7.3:+22854340 | MS.gene08197:CDS |
| GCTAGGCTTTGCAAGTGCCT+CGG | 0.435027 | 7.3:+22856336 | MS.gene08197:CDS |
| TTCTTAACGATGGATTTGAT+TGG | 0.437781 | 7.3:-22852304 | None:intergenic |
| ATCCAAACCCTCGGGTGCGG+TGG | 0.438594 | 7.3:+22854248 | MS.gene08197:CDS |
| TAGTGCTGCTACTTCCTCTT+CGG | 0.440238 | 7.3:+22852543 | MS.gene08197:CDS |
| GTTCAGGGACGATGCCAAAC+AGG | 0.443445 | 7.3:+22855950 | MS.gene08197:CDS |
| AAAAGAAGCGGAAGCAAGTC+AGG | 0.444656 | 7.3:-22852388 | None:intergenic |
| ACTAATACACTCCATTGCTT+TGG | 0.446076 | 7.3:-22855898 | None:intergenic |
| CTCACCGCAGCATGCCAAGC+AGG | 0.448315 | 7.3:-22853723 | None:intergenic |
| AGAAGAAGGGACTCGCCATT+TGG | 0.448470 | 7.3:+22853572 | MS.gene08197:CDS |
| GGCATGACAAAACCCATGTA+TGG | 0.449433 | 7.3:-22856372 | None:intergenic |
| CTTATTTGGCTGCCCCTGAA+TGG | 0.450857 | 7.3:+22853865 | MS.gene08197:CDS |
| AGTTTGAGGATTAAGGAATC+GGG | 0.451683 | 7.3:-22852112 | None:intergenic |
| TGTGCTAATGAATTTGTTGT+TGG | 0.452880 | 7.3:+22853686 | MS.gene08197:CDS |
| TATAGGCAAGCAACTTAGCC+AGG | 0.454237 | 7.3:-22861428 | None:intergenic |
| GAGAAGAAGAGAACGGAGAG+TGG | 0.454619 | 7.3:-22852263 | None:intergenic |
| CTTGCACAAATTTCTACCTC+TGG | 0.455019 | 7.3:-22858009 | None:intergenic |
| GTGCTAGATTGGCGATTGCT+TGG | 0.457692 | 7.3:+22859127 | MS.gene08197:intron |
| ATCTAGATGAAAAGCAAGTA+AGG | 0.458320 | 7.3:+22858863 | MS.gene08197:CDS |
| CCAATTCATCCGACCGTGAC+AGG | 0.458336 | 7.3:+22852617 | MS.gene08197:CDS |
| CAGTTTGTAAAGAAGTTGTT+TGG | 0.458846 | 7.3:+22853663 | MS.gene08197:CDS |
| GAATTTGTTGTTGGATATTG+AGG | 0.461520 | 7.3:+22853695 | MS.gene08197:CDS |
| CAGGCTTAAGTTGTGCAGAC+TGG | 0.467586 | 7.3:-22856404 | None:intergenic |
| AATAAGGTACTAAAATATCT+GGG | 0.467659 | 7.3:-22855129 | None:intergenic |
| TTTCAACCATTGAACAAAGA+AGG | 0.467766 | 7.3:-22861486 | None:intergenic |
| ATTATCAGAATGCTGTGCAT+TGG | 0.469285 | 7.3:-22860526 | None:intergenic |
| TGGATTGAGTTGAAGGGGAG+AGG | 0.469956 | 7.3:-22852243 | None:intergenic |
| GGCAAGCAACTTAGCCAGGC+TGG | 0.471152 | 7.3:-22861424 | None:intergenic |
| GACTTTCAATTGCTTTGGGC+GGG | 0.473563 | 7.3:+22853805 | MS.gene08197:CDS |
| TTGCAAGCTTCAAGCAAGAA+TGG | 0.473957 | 7.3:-22860067 | None:intergenic |
| GGCAGCAATTCAGACGCAAC+TGG | 0.474296 | 7.3:-22853840 | None:intergenic |
| GCAGGACTTCCTCCCATACA+TGG | 0.476423 | 7.3:+22856359 | MS.gene08197:CDS |
| TGGAAAGCAGATGGTTCAAG+AGG | 0.476999 | 7.3:+22855624 | MS.gene08197:CDS |
| CTTCTACCCTTGCTTCAACC+TGG | 0.477777 | 7.3:+22861902 | MS.gene08197:CDS |
| CTTCTACAGAGGCACTTTCA+AGG | 0.478037 | 7.3:+22860481 | MS.gene08197:intron |
| ACTCTCGGGGATAAAAGAAT+AGG | 0.482856 | 7.3:+22857427 | MS.gene08197:CDS |
| AATGTCATCAAATATACAAA+TGG | 0.487724 | 7.3:-22859852 | None:intergenic |
| CTTACTTATGAGCTGCTTCG+CGG | 0.490569 | 7.3:-22859886 | None:intergenic |
| GACGAAAGCTCTTCAAAGAA+AGG | 0.491643 | 7.3:-22859185 | None:intergenic |
| CAGGTTGAAGCAAGGGTAGA+AGG | 0.492470 | 7.3:-22861901 | None:intergenic |
| GAATTAGAGCCATTTGTGCC+TGG | 0.493360 | 7.3:-22851979 | None:intergenic |
| GATTCGAAGTGGGTTGAATC+CGG | 0.493509 | 7.3:-22852007 | None:intergenic |
| GGTGCGTGTTTCGGGGTTAG+GGG | 0.494918 | 7.3:-22852155 | None:intergenic |
| TTATCAGAATGCTGTGCATT+GGG | 0.497165 | 7.3:-22860525 | None:intergenic |
| AGAAATTTGTGCAAGCATGT+TGG | 0.498176 | 7.3:+22858017 | MS.gene08197:CDS |
| CATATAGGTTGCTTCCACAT+TGG | 0.499173 | 7.3:+22857623 | MS.gene08197:intron |
| AGGTGATTTAATCGAGGCTA+AGG | 0.501348 | 7.3:+22861453 | MS.gene08197:CDS |
| AGGCAAATTGTTGACATTGT+TGG | 0.502918 | 7.3:+22853516 | MS.gene08197:CDS |
| GACCAGTGTCTTGGAGGAGA+AGG | 0.504137 | 7.3:+22857456 | MS.gene08197:CDS |
| TTGCTACGCTGATGAGTTGA+AGG | 0.504595 | 7.3:+22857501 | MS.gene08197:CDS |
| GAGGATTAAGGAATCGGGAT+AGG | 0.504738 | 7.3:-22852107 | None:intergenic |
| AGGCATTAAGACCAGTGTCT+TGG | 0.504923 | 7.3:+22857447 | MS.gene08197:CDS |
| CGCACTGAATGAATGCATAC+AGG | 0.505412 | 7.3:+22858041 | MS.gene08197:CDS |
| TGTGATTAGGGATTCGAAGT+GGG | 0.507731 | 7.3:-22852017 | None:intergenic |
| AGCATTGAAACCATTACTCT+CGG | 0.515898 | 7.3:+22857412 | MS.gene08197:intron |
| CATTAAGACCAGTGTCTTGG+AGG | 0.520829 | 7.3:+22857450 | MS.gene08197:CDS |
| AAACCCTCGGGTGCGGTGGG+CGG | 0.521210 | 7.3:+22854252 | MS.gene08197:CDS |
| AGCAAAATCGGCTATAGAGA+AGG | 0.523446 | 7.3:+22857817 | MS.gene08197:CDS |
| CAACAAACTCAATAGCCAAA+TGG | 0.523533 | 7.3:-22853587 | None:intergenic |
| GGAGAGTGGATTGAGTTGAA+GGG | 0.524186 | 7.3:-22852249 | None:intergenic |
| ATGGAGTGTATTAGTTTGGT+AGG | 0.525634 | 7.3:+22855906 | MS.gene08197:CDS |
| AATTGCAGAGGGTTGTTCAA+AGG | 0.526620 | 7.3:+22853923 | MS.gene08197:CDS |
| TCCAAACCCTCGGGTGCGGT+GGG | 0.527222 | 7.3:+22854249 | MS.gene08197:CDS |
| CAGTCAATGTCTGCATCATG+AGG | 0.527836 | 7.3:-22853404 | None:intergenic |
| TTCTTTGTTCAATGGTTGAA+AGG | 0.529928 | 7.3:+22861488 | MS.gene08197:CDS |
| TTCTCAGGCAGCTGTTTATG+GGG | 0.531178 | 7.3:+22860212 | MS.gene08197:intron |
| AGGCGAGAGAGCGTGCTCCT+GGG | 0.532344 | 7.3:+22853622 | MS.gene08197:CDS |
| GCATTGAAACCATTACTCTC+GGG | 0.533758 | 7.3:+22857413 | MS.gene08197:intron |
| GGGTTACTTCCAATGATGCT+AGG | 0.533828 | 7.3:+22852416 | MS.gene08197:CDS |
| GCTTTGCAAGTGCCTCGGGC+AGG | 0.534139 | 7.3:+22856341 | MS.gene08197:CDS |
| TGGTCAAGAGGCAACTGCAC+AGG | 0.535935 | 7.3:+22853440 | MS.gene08197:CDS |
| GAGGCTGAGTCATTAGAAGA+AGG | 0.539348 | 7.3:+22853558 | MS.gene08197:CDS |
| TCCGGCATTAGCTGGAGCCA+TGG | 0.539722 | 7.3:+22854348 | MS.gene08197:CDS |
| AGCAGAGAGAGCCAAAGAAG+AGG | 0.540126 | 7.3:+22858945 | MS.gene08197:CDS |
| GCGTGAGATGACGACGGAGG+AGG | 0.540424 | 7.3:-22852189 | None:intergenic |
| GAGAGTGGATTGAGTTGAAG+GGG | 0.541926 | 7.3:-22852248 | None:intergenic |
| CATTTCCTGATCCAAACCCT+CGG | 0.542062 | 7.3:+22854239 | MS.gene08197:CDS |
| TAGTAACTACGGATTTGGTC+AGG | 0.542717 | 7.3:+22853770 | MS.gene08197:CDS |
| GCAAAATCGGCTATAGAGAA+GGG | 0.543836 | 7.3:+22857818 | MS.gene08197:CDS |
| GAAAACAGATCCACCAAACT+CGG | 0.543899 | 7.3:-22860247 | None:intergenic |
| ATTTCCTGATCCAAACCCTC+GGG | 0.544085 | 7.3:+22854240 | MS.gene08197:CDS |
| TTGAGGGTGCAACGATGACC+AGG | 0.544184 | 7.3:-22861920 | None:intergenic |
| GGTGTCTGTGCCGAGTTTGG+TGG | 0.546933 | 7.3:+22860237 | MS.gene08197:CDS |
| CTGATCCAAACCCTCGGGTG+CGG | 0.549434 | 7.3:+22854245 | MS.gene08197:CDS |
| AATGGCTCTAATTCTAGGAC+CGG | 0.549460 | 7.3:+22851988 | MS.gene08197:CDS |
| AGTTTGGTAGGTATGGCTGT+TGG | 0.550737 | 7.3:+22855918 | MS.gene08197:CDS |
| ACAGCATTCTGATAATGTAA+TGG | 0.552103 | 7.3:+22860533 | MS.gene08197:CDS |
| GGGCGGCTATAAATGCAATT+GGG | 0.552920 | 7.3:+22854269 | MS.gene08197:CDS |
| TCAGGGGCAGCCAAATAAGT+TGG | 0.553225 | 7.3:-22853861 | None:intergenic |
| GGCAATTCTCCTTTCCTCTG+AGG | 0.555040 | 7.3:-22859831 | None:intergenic |
| CTGAGCCACGTTTCCTGCGG+AGG | 0.555443 | 7.3:+22853496 | MS.gene08197:CDS |
| TTGGCATGCTGCGGTGAGCG+AGG | 0.555498 | 7.3:+22853728 | MS.gene08197:CDS |
| TGTCAACAATTTGCCTCCGC+AGG | 0.556267 | 7.3:-22853509 | None:intergenic |
| GAATGAAGAGTAGACAATTG+AGG | 0.556981 | 7.3:-22852502 | None:intergenic |
| GCTGATGTAATTGACACGTC+AGG | 0.557042 | 7.3:-22856423 | None:intergenic |
| AACAACTTCTTTACAAACTG+CGG | 0.559246 | 7.3:-22853660 | None:intergenic |
| TTATATAATTCCAAATTTGG+TGG | 0.559998 | 7.3:+22857886 | MS.gene08197:CDS |
| ATCAGTCGCTGATTCTTCAC+AGG | 0.561950 | 7.3:+22855666 | MS.gene08197:CDS |
| TCCATGGCTCCAGCTAATGC+CGG | 0.563505 | 7.3:-22854349 | None:intergenic |
| TGAGTGTTCAGATGTTCGAC+AGG | 0.565579 | 7.3:+22860093 | MS.gene08197:CDS |
| CTTCCATGAAGAAGTTAGGA+AGG | 0.568668 | 7.3:+22857665 | MS.gene08197:CDS |
| TTTCGGGGTTAGGGGAAGTG+TGG | 0.570235 | 7.3:-22852147 | None:intergenic |
| ATGATGTAGATATTATGTGC+GGG | 0.570591 | 7.3:+22861805 | MS.gene08197:intron |
| GAAAGGGAACTTACAAACAT+AGG | 0.571714 | 7.3:-22859218 | None:intergenic |
| TGAGTTGAAGGGGAGAGGTG+TGG | 0.572248 | 7.3:-22852238 | None:intergenic |
| TGGAAGTAAAATTTAAGGAG+AGG | 0.574089 | 7.3:-22857648 | None:intergenic |
| ATAGCCGCCCACCGCACCCG+AGG | 0.574957 | 7.3:-22854256 | None:intergenic |
| AGCGTGCTCCTGGGATGATG+AGG | 0.575247 | 7.3:+22853631 | MS.gene08197:CDS |
| GCTAGATTGGCGATTGCTTG+GGG | 0.575752 | 7.3:+22859129 | MS.gene08197:intron |
| AGCAGAAGCGAGTTCCGAAA+CGG | 0.576464 | 7.3:-22852338 | None:intergenic |
| CAAGTCTGGCCCCAAATCTG+TGG | 0.576849 | 7.3:-22854299 | None:intergenic |
| GAAGTGCAAGTTGTTGTTGA+GGG | 0.578046 | 7.3:-22861936 | None:intergenic |
| ACCTGTCTTCCAGGAGCCAG+AGG | 0.578090 | 7.3:+22857993 | MS.gene08197:intron |
| GGCATTGAATTCTGGTCAAG+AGG | 0.578146 | 7.3:+22853428 | MS.gene08197:CDS |
| TTCTTCTAATGACTCAGCCT+CGG | 0.578657 | 7.3:-22853556 | None:intergenic |
| AGCCTCGGCAATCTGCAGCA+TGG | 0.581379 | 7.3:-22853541 | None:intergenic |
| GAAATTGATACTTGCAGCAA+GGG | 0.585035 | 7.3:-22852581 | None:intergenic |
| TATGCTTCGTGCCAAAGCAA+TGG | 0.585169 | 7.3:+22855887 | MS.gene08197:CDS |
| ATGCCAACCTGGTCAATCCA+AGG | 0.585232 | 7.3:-22857535 | None:intergenic |
| GTCGCATAGCTTCTTAACGA+TGG | 0.586119 | 7.3:-22852314 | None:intergenic |
| ACTGCTGGTTATACCTGTCA+CGG | 0.586216 | 7.3:-22852630 | None:intergenic |
| CGATGACCAGGTTGAAGCAA+GGG | 0.586628 | 7.3:-22861908 | None:intergenic |
| GGCAATTGTCCACAGATTTG+GGG | 0.586673 | 7.3:+22854290 | MS.gene08197:CDS |
| TAGCCGCCCACCGCACCCGA+GGG | 0.589983 | 7.3:-22854255 | None:intergenic |
| AGACTTTCAATTGCTTTGGG+CGG | 0.591625 | 7.3:+22853804 | MS.gene08197:CDS |
| AGGCTGAGTCATTAGAAGAA+GGG | 0.592282 | 7.3:+22853559 | MS.gene08197:CDS |
| TACGCTGATGAGTTGAAGGA+AGG | 0.594226 | 7.3:+22857505 | MS.gene08197:CDS |
| ACGATGACCAGGTTGAAGCA+AGG | 0.594289 | 7.3:-22861909 | None:intergenic |
| GCATGACAAAACCCATGTAT+GGG | 0.594926 | 7.3:-22856371 | None:intergenic |
| TGATAGCATAAATGCAGCAC+AGG | 0.595998 | 7.3:+22860605 | MS.gene08197:CDS |
| GCACTTGCACAAATTGCAGA+GGG | 0.597196 | 7.3:+22853912 | MS.gene08197:CDS |
| AGCCTTCTCCTCCAAGACAC+TGG | 0.597210 | 7.3:-22857458 | None:intergenic |
| GAGTAACTGACCTCCAACAA+GGG | 0.597739 | 7.3:-22860274 | None:intergenic |
| TGCACTTGCACAAATTGCAG+AGG | 0.597774 | 7.3:+22853911 | MS.gene08197:CDS |
| CAGGACTTCCTCCCATACAT+GGG | 0.597797 | 7.3:+22856360 | MS.gene08197:CDS |
| AGTCAATGTCTGCATCATGA+GGG | 0.598271 | 7.3:-22853403 | None:intergenic |
| AAGACAAAACCTCAGAGGAA+AGG | 0.598498 | 7.3:+22859822 | MS.gene08197:CDS |
| ACGGAGGAGGATGGTGGACA+TGG | 0.599090 | 7.3:-22852176 | None:intergenic |
| TGATCCTGCTTGGCATGCTG+CGG | 0.600005 | 7.3:+22853719 | MS.gene08197:CDS |
| GGAACGTTGGTCGTTGATGG+TGG | 0.600639 | 7.3:-22852050 | None:intergenic |
| TTGTGATTAGGGATTCGAAG+TGG | 0.600736 | 7.3:-22852018 | None:intergenic |
| TGTTGGAAAAGAGAAGTTCA+GGG | 0.601486 | 7.3:+22855935 | MS.gene08197:CDS |
| ATAGAGAAGGGGCAGTCACA+AGG | 0.604230 | 7.3:+22857830 | MS.gene08197:CDS |
| AAGTTGTGCAGACTGGAGCA+AGG | 0.604837 | 7.3:-22856397 | None:intergenic |
| AAACAATTAGGATGATAGGA+TGG | 0.605832 | 7.3:-22861962 | None:intergenic |
| TGTAACATGTAACTCGCGGT+TGG | 0.607384 | 7.3:-22856179 | None:intergenic |
| GGTAACTTCCTCATCATCCC+AGG | 0.608657 | 7.3:-22853639 | None:intergenic |
| GTGCTGCATTTATGCTATCA+CGG | 0.611301 | 7.3:-22860602 | None:intergenic |
| TGTGCAGACTGGAGCAAGGG+AGG | 0.611908 | 7.3:-22856393 | None:intergenic |
| ATTATAGAGTGGAAAGCAGA+TGG | 0.615282 | 7.3:+22855615 | MS.gene08197:intron |
| TGAAGAAAGAGAACTACTCA+AGG | 0.616789 | 7.3:+22858978 | MS.gene08197:CDS |
| TCAAGAGGCAACTGCACAGG+AGG | 0.618446 | 7.3:+22853443 | MS.gene08197:CDS |
| GGCGTTGAACGATCAAAACC+AGG | 0.620419 | 7.3:+22851961 | MS.gene08197:CDS |
| GGACTGAGCCACGTTTCCTG+CGG | 0.621090 | 7.3:+22853493 | MS.gene08197:CDS |
| ATTTGCCTCCGCAGGAAACG+TGG | 0.621262 | 7.3:-22853501 | None:intergenic |
| ATTGATACTTGCAGCAAGGG+CGG | 0.621696 | 7.3:-22852578 | None:intergenic |
| AATTTGATGAAGATGATGAC+AGG | 0.621774 | 7.3:+22856460 | MS.gene08197:CDS |
| GAGATGACGACGGAGGAGGA+TGG | 0.621924 | 7.3:-22852185 | None:intergenic |
| CGAAATTGATACTTGCAGCA+AGG | 0.622904 | 7.3:-22852582 | None:intergenic |
| TGAGTAACTGACCTCCAACA+AGG | 0.625252 | 7.3:-22860275 | None:intergenic |
| GCTGGTGAGACTAGTAACTA+CGG | 0.626383 | 7.3:+22853759 | MS.gene08197:CDS |
| GTGAGCGAGGATGATGATGC+TGG | 0.627605 | 7.3:+22853741 | MS.gene08197:CDS |
| GAGATGAGAGAAGAAGAGAA+CGG | 0.627726 | 7.3:-22852270 | None:intergenic |
| AGTTGTGCAGACTGGAGCAA+GGG | 0.630199 | 7.3:-22856396 | None:intergenic |
| GTCAATGTCTGCATCATGAG+GGG | 0.630206 | 7.3:-22853402 | None:intergenic |
| TGAAGTGCAAGTTGTTGTTG+AGG | 0.630485 | 7.3:-22861937 | None:intergenic |
| ATATTGAGGATGATCCTGCT+TGG | 0.630778 | 7.3:+22853709 | MS.gene08197:CDS |
| GGTCGTTGATGGTGGACATG+AGG | 0.631868 | 7.3:-22852042 | None:intergenic |
| ATGACGACGGAGGAGGATGG+TGG | 0.632074 | 7.3:-22852182 | None:intergenic |
| TATGATGTAGATATTATGTG+CGG | 0.632192 | 7.3:+22861804 | MS.gene08197:intron |
| GCAAGTCAGGCCAAGAAGCG+AGG | 0.632791 | 7.3:-22852375 | None:intergenic |
| CATTGAAACCATTACTCTCG+GGG | 0.635821 | 7.3:+22857414 | MS.gene08197:CDS |
| AAAGTGCAAACCTGTACTCG+AGG | 0.643138 | 7.3:-22854385 | None:intergenic |
| TGGACATGGTGCGTGTTTCG+GGG | 0.644346 | 7.3:-22852162 | None:intergenic |
| CTGGTTATACCTGTCACGGT+CGG | 0.644881 | 7.3:-22852626 | None:intergenic |
| CAAAATCGGCTATAGAGAAG+GGG | 0.649523 | 7.3:+22857819 | MS.gene08197:CDS |
| TGATGTAGATATTATGTGCG+GGG | 0.651326 | 7.3:+22861806 | MS.gene08197:intron |
| TGCCATGCTGCAGATTGCCG+AGG | 0.655913 | 7.3:+22853539 | MS.gene08197:CDS |
| TGACAAAACCCATGTATGGG+AGG | 0.656396 | 7.3:-22856368 | None:intergenic |
| ATAAGGTACTAAAATATCTG+GGG | 0.656506 | 7.3:-22855128 | None:intergenic |
| TTTGGTGGAAGCTTTACACA+AGG | 0.658617 | 7.3:+22857901 | MS.gene08197:CDS |
| TATAAAAGGTGATTTAATCG+AGG | 0.661157 | 7.3:+22861447 | MS.gene08197:CDS |
| CTAATGCCGGAAGCACTAAG+TGG | 0.661368 | 7.3:-22854336 | None:intergenic |
| AGTAACTGACCTCCAACAAG+GGG | 0.665562 | 7.3:-22860273 | None:intergenic |
| AAAGCAAGTAAGGAGCATTG+TGG | 0.670200 | 7.3:+22858873 | MS.gene08197:CDS |
| GGAAAGCAGATGGTTCAAGA+GGG | 0.674345 | 7.3:+22855625 | MS.gene08197:CDS |
| TACTTGTAACATGTAACTCG+CGG | 0.676630 | 7.3:-22856183 | None:intergenic |
| AGATGAAAGAGTCGTCGTGG+TGG | 0.677354 | 7.3:-22852213 | None:intergenic |
| GTTTGTTGTTACACTTGCTG+AGG | 0.679801 | 7.3:+22853602 | MS.gene08197:CDS |
| GGCAATACGAACATCCGAAG+AGG | 0.686647 | 7.3:-22852557 | None:intergenic |
| GGGTAAAGACAAAACCTCAG+AGG | 0.692614 | 7.3:+22859817 | MS.gene08197:intron |
| TTTAAGGAGAGGAACCAATG+TGG | 0.693314 | 7.3:-22857637 | None:intergenic |
| CAACTGAACAAACTGTGAGT+CGG | 0.697226 | 7.3:+22861839 | MS.gene08197:CDS |
| GGCGCGTGAGATGACGACGG+AGG | 0.701509 | 7.3:-22852192 | None:intergenic |
| CATGATGCAGACATTGACTG+AGG | 0.701645 | 7.3:+22853407 | MS.gene08197:CDS |
| ATGGGAGGAAGTCCTGCCCG+AGG | 0.705946 | 7.3:-22856353 | None:intergenic |
| CAAGTGCAACGAGTGCAGCA+TGG | 0.707450 | 7.3:-22853896 | None:intergenic |
| GTTGAAGCAAGGGTAGAAGG+CGG | 0.720013 | 7.3:-22861898 | None:intergenic |
| GATAGATGAAAGAGTCGTCG+TGG | 0.754182 | 7.3:-22852216 | None:intergenic |
| GGTGGCGCGTGAGATGACGA+CGG | 0.767695 | 7.3:-22852195 | None:intergenic |
| CTGCATTTATGCTATCACGG+TGG | 0.809952 | 7.3:-22860599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22851959 | 22861978 | 22851959 | ID=MS.gene08197 |
| chr7.3 | mRNA | 22851959 | 22861978 | 22851959 | ID=MS.gene08197.t1;Parent=MS.gene08197 |
| chr7.3 | exon | 22851959 | 22852638 | 22851959 | ID=MS.gene08197.t1.exon1;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22851959 | 22852638 | 22851959 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22853386 | 22853944 | 22853386 | ID=MS.gene08197.t1.exon2;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22853386 | 22853944 | 22853386 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22854193 | 22854396 | 22854193 | ID=MS.gene08197.t1.exon3;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22854193 | 22854396 | 22854193 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22855085 | 22855189 | 22855085 | ID=MS.gene08197.t1.exon4;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22855085 | 22855189 | 22855085 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22855622 | 22855687 | 22855622 | ID=MS.gene08197.t1.exon5;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22855622 | 22855687 | 22855622 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22855807 | 22855971 | 22855807 | ID=MS.gene08197.t1.exon6;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22855807 | 22855971 | 22855807 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22856128 | 22856202 | 22856128 | ID=MS.gene08197.t1.exon7;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22856128 | 22856202 | 22856128 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22856330 | 22856481 | 22856330 | ID=MS.gene08197.t1.exon8;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22856330 | 22856481 | 22856330 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22857414 | 22857549 | 22857414 | ID=MS.gene08197.t1.exon9;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22857414 | 22857549 | 22857414 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22857630 | 22857699 | 22857630 | ID=MS.gene08197.t1.exon10;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22857630 | 22857699 | 22857630 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22857795 | 22857922 | 22857795 | ID=MS.gene08197.t1.exon11;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22857795 | 22857922 | 22857795 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22858006 | 22858062 | 22858006 | ID=MS.gene08197.t1.exon12;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22858006 | 22858062 | 22858006 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22858850 | 22859035 | 22858850 | ID=MS.gene08197.t1.exon13;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22858850 | 22859035 | 22858850 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22859134 | 22859226 | 22859134 | ID=MS.gene08197.t1.exon14;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22859134 | 22859226 | 22859134 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22859818 | 22859903 | 22859818 | ID=MS.gene08197.t1.exon15;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22859818 | 22859903 | 22859818 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22860048 | 22860114 | 22860048 | ID=MS.gene08197.t1.exon16;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22860048 | 22860114 | 22860048 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22860219 | 22860285 | 22860219 | ID=MS.gene08197.t1.exon17;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22860219 | 22860285 | 22860219 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22860490 | 22860626 | 22860490 | ID=MS.gene08197.t1.exon18;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22860490 | 22860626 | 22860490 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22861418 | 22861509 | 22861418 | ID=MS.gene08197.t1.exon19;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22861418 | 22861509 | 22861418 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22861641 | 22861707 | 22861641 | ID=MS.gene08197.t1.exon20;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22861641 | 22861707 | 22861641 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| chr7.3 | exon | 22861814 | 22861978 | 22861814 | ID=MS.gene08197.t1.exon21;Parent=MS.gene08197.t1 |
| chr7.3 | CDS | 22861814 | 22861978 | 22861814 | ID=cds.MS.gene08197.t1;Parent=MS.gene08197.t1 |
| Gene Sequence |
| Protein sequence |
