Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08234.t1 | XP_003601083.1 | 93.7 | 445 | 25 | 2 | 1 | 443 | 1 | 444 | 9.50E-233 | 815.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08234.t1 | G7J3K0 | 93.7 | 445 | 25 | 2 | 1 | 443 | 1 | 444 | 6.8e-233 | 815.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene08234 | 0.838876 | 2.22E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08234.t1 | MTR_3g072840 | 93.708 | 445 | 25 | 2 | 1 | 443 | 1 | 444 | 0.0 | 811 |
| MS.gene08234.t1 | MTR_3g072830 | 54.788 | 449 | 185 | 9 | 1 | 439 | 1 | 441 | 4.21e-152 | 439 |
| MS.gene08234.t1 | MTR_3g007470 | 64.183 | 349 | 122 | 3 | 96 | 443 | 36 | 382 | 7.49e-145 | 418 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08234.t1 | AT2G41705 | 51.529 | 425 | 191 | 7 | 25 | 440 | 37 | 455 | 3.76e-120 | 358 |
| MS.gene08234.t1 | AT2G41705 | 51.529 | 425 | 191 | 7 | 25 | 440 | 37 | 455 | 3.76e-120 | 358 |
| MS.gene08234.t1 | AT2G41705 | 51.529 | 425 | 191 | 7 | 25 | 440 | 37 | 455 | 3.76e-120 | 358 |
| MS.gene08234.t1 | AT2G41705 | 51.529 | 425 | 191 | 7 | 25 | 440 | 37 | 455 | 3.76e-120 | 358 |
Find 88 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTGCCATCAAATA+TGG | 0.217091 | 3.2:-65563492 | MS.gene08234:intron |
| AGGACTTCAATTTGGTCTAT+TGG | 0.243981 | 3.2:-65561866 | MS.gene08234:CDS |
| TGTCGATCATCATTGGTTTC+TGG | 0.244597 | 3.2:-65562497 | MS.gene08234:CDS |
| TGGTGATATTAGCTTTGTTA+TGG | 0.283155 | 3.2:-65562347 | MS.gene08234:CDS |
| CCCATCTTTGTTTCAACAAA+TGG | 0.283826 | 3.2:-65564165 | MS.gene08234:CDS |
| GCCTGCATTGTTGGACCTCT+TGG | 0.293298 | 3.2:-65562258 | MS.gene08234:CDS |
| AGACTTAACGAGTGCGAAAT+TGG | 0.297010 | 3.2:-65562207 | MS.gene08234:CDS |
| TCATTTGGACCAAGTGGTTT+TGG | 0.299453 | 3.2:-65563542 | MS.gene08234:CDS |
| TGATAGAAAACAAGCATCTT+TGG | 0.308824 | 3.2:-65561798 | MS.gene08234:CDS |
| GGACTTCAATTTGGTCTATT+GGG | 0.318154 | 3.2:-65561865 | MS.gene08234:CDS |
| CTCACTCACATTCTTGAAAC+AGG | 0.318173 | 3.2:+65561706 | None:intergenic |
| ACAATATAGTTATTATTAGA+TGG | 0.318561 | 3.2:+65564207 | None:intergenic |
| TTATATATCAAACCAGAAAA+TGG | 0.319807 | 3.2:-65564270 | MS.gene08234:CDS |
| GTGATAACAGGACTTCAATT+TGG | 0.320323 | 3.2:-65561874 | MS.gene08234:CDS |
| ACCAAACCATCCCATCAAAA+AGG | 0.332116 | 3.2:+65562945 | None:intergenic |
| TACTTATTGCAAAAGTCATT+TGG | 0.339763 | 3.2:-65563557 | MS.gene08234:CDS |
| GGTGATATTAGCTTTGTTAT+GGG | 0.342133 | 3.2:-65562346 | MS.gene08234:CDS |
| GGCAATTCATGTTCCATTGC+AGG | 0.342935 | 3.2:+65564231 | None:intergenic |
| CACTGGATCTTGTCTTTGCT+CGG | 0.345396 | 3.2:-65562793 | MS.gene08234:CDS |
| TGTTTCGTGTCTAACTCATT+TGG | 0.377439 | 3.2:-65563959 | MS.gene08234:CDS |
| TTGTTGGACCTCTTGGTGTA+TGG | 0.380313 | 3.2:-65562251 | MS.gene08234:CDS |
| GACCTCTTGGTGTATGGCTT+AGG | 0.383143 | 3.2:-65562245 | MS.gene08234:CDS |
| TCCATTTGTTGAAACAAAGA+TGG | 0.386494 | 3.2:+65564164 | None:intergenic |
| GGTCTAACAACCGGCTACTT+AGG | 0.389772 | 3.2:-65562874 | MS.gene08234:CDS |
| TCTTTGCTCGGCTTTGTACT+AGG | 0.391256 | 3.2:-65562781 | MS.gene08234:intron |
| AATTGTGATACTGTGATAAC+AGG | 0.402053 | 3.2:-65561886 | MS.gene08234:CDS |
| TGACAGCTTCCTTCGTCAAT+TGG | 0.430603 | 3.2:-65562388 | MS.gene08234:CDS |
| AAAACTTACTGATTTCTTGA+GGG | 0.431062 | 3.2:+65562104 | None:intergenic |
| GTTGGGGTTCTGCAGTTAGC+AGG | 0.434224 | 3.2:-65564419 | MS.gene08234:CDS |
| CGTGAGTGTGGTTCAGCTGC+AGG | 0.439210 | 3.2:-65564348 | MS.gene08234:CDS |
| CATGGAGCGAACGAGCAGTT+GGG | 0.449685 | 3.2:-65564436 | MS.gene08234:CDS |
| GCCTAACAACTTTCAGCGGC+TGG | 0.451556 | 3.2:-65562849 | MS.gene08234:CDS |
| TCCAGCCGCTGAAAGTTGTT+AGG | 0.453775 | 3.2:+65562848 | None:intergenic |
| CTGGTTTGATATATAAAGAC+AGG | 0.458399 | 3.2:+65564277 | None:intergenic |
| GTAGCATTGTCGATCATCAT+TGG | 0.460693 | 3.2:-65562504 | MS.gene08234:CDS |
| TTGTGGTTAGCCTGCATTGT+TGG | 0.460887 | 3.2:-65562267 | MS.gene08234:CDS |
| ATGCTCGAGCTCAGTGTCGC+TGG | 0.460917 | 3.2:-65562817 | MS.gene08234:CDS |
| CGAAACAAATTCCAGTAGCT+TGG | 0.472897 | 3.2:+65563975 | None:intergenic |
| GTCTAACAACCGGCTACTTA+GGG | 0.474314 | 3.2:-65562873 | MS.gene08234:CDS |
| CTAGCCATTGGTCTAACAAC+CGG | 0.476478 | 3.2:-65562883 | MS.gene08234:CDS |
| GAGAGGCGAACCATATTTGA+TGG | 0.476823 | 3.2:+65563482 | None:intergenic |
| AGCTCAGTGTCGCTGGACAC+TGG | 0.485522 | 3.2:-65562810 | MS.gene08234:CDS |
| ATGGGGTGTGAGTAGTGCTT+TGG | 0.485675 | 3.2:-65562328 | MS.gene08234:CDS |
| CATGAAGTTACCCAAGCTAC+TGG | 0.489022 | 3.2:-65563986 | MS.gene08234:CDS |
| TAATATCACCAACAACACTA+TGG | 0.492265 | 3.2:+65562359 | None:intergenic |
| GAGAGCATTTGTCTATGCTA+TGG | 0.494452 | 3.2:-65561776 | MS.gene08234:CDS |
| AAAAGAAAATGAAACGCAAA+TGG | 0.498184 | 3.2:+65561750 | None:intergenic |
| CCAACTGCTCGTTCGCTCCA+TGG | 0.502807 | 3.2:+65564437 | None:intergenic |
| GAAACAAATTCCAGTAGCTT+GGG | 0.506298 | 3.2:+65563976 | None:intergenic |
| CCATGGAGCGAACGAGCAGT+TGG | 0.508369 | 3.2:-65564437 | MS.gene08234:CDS |
| CTTTGTTTCAACAAATGGAA+AGG | 0.511711 | 3.2:-65564160 | MS.gene08234:CDS |
| CATTGGTTTCTGGACGGCGA+AGG | 0.512919 | 3.2:-65562487 | MS.gene08234:CDS |
| GGTAGTGACCATAGTGTTGT+TGG | 0.519775 | 3.2:-65562367 | MS.gene08234:CDS |
| GTGATATTAGCTTTGTTATG+GGG | 0.520721 | 3.2:-65562345 | MS.gene08234:CDS |
| AACGAGTGCGAAATTGGAGG+AGG | 0.526946 | 3.2:-65562201 | MS.gene08234:CDS |
| GGAGGAAGGAAAAGTGAGAG+TGG | 0.527956 | 3.2:-65564309 | MS.gene08234:CDS |
| CCATTTGTTGAAACAAAGAT+GGG | 0.530182 | 3.2:+65564165 | None:intergenic |
| CCATATTTGATGGCAGATCA+AGG | 0.532230 | 3.2:+65563492 | None:intergenic |
| GTATCTGAACATCTAGCCAT+TGG | 0.532584 | 3.2:-65562895 | MS.gene08234:CDS |
| ATTGGTTTCTGGACGGCGAA+GGG | 0.538719 | 3.2:-65562486 | MS.gene08234:CDS |
| TGTTTCTGCTGCTTGTATCA+CGG | 0.540208 | 3.2:-65562139 | MS.gene08234:CDS |
| GGACGGCGAAGGGATTCAAA+TGG | 0.542568 | 3.2:-65562476 | MS.gene08234:CDS |
| ACCAAGAGGTCCAACAATGC+AGG | 0.546644 | 3.2:+65562257 | None:intergenic |
| CTGGTCACGCCAAAACCACT+TGG | 0.550500 | 3.2:+65563533 | None:intergenic |
| CAAAAGTCATTTGGACCAAG+TGG | 0.552223 | 3.2:-65563548 | MS.gene08234:CDS |
| ACTTACTGATTTCTTGAGGG+TGG | 0.554227 | 3.2:+65562107 | None:intergenic |
| TGTTAGGCTCCCTAAGTAGC+CGG | 0.558390 | 3.2:+65562864 | None:intergenic |
| GGCTAGATGTTCAGATACAT+AGG | 0.562753 | 3.2:+65562900 | None:intergenic |
| TATATCGAAACTAAGCTGGA+AGG | 0.568673 | 3.2:-65562412 | MS.gene08234:CDS |
| GGAAGGAAAAGTGAGAGTGG+TGG | 0.583294 | 3.2:-65564306 | MS.gene08234:CDS |
| GATACAAGCAGCAGAAACAT+TGG | 0.593081 | 3.2:+65562143 | None:intergenic |
| TTGTTGAAACAAAGATGGGA+AGG | 0.595444 | 3.2:+65564169 | None:intergenic |
| CTTAACGAGTGCGAAATTGG+AGG | 0.610168 | 3.2:-65562204 | MS.gene08234:CDS |
| AAGATGGGAAGGTGTTCTTG+TGG | 0.616586 | 3.2:+65564180 | None:intergenic |
| ACGAGTGCGAAATTGGAGGA+GGG | 0.618522 | 3.2:-65562200 | MS.gene08234:CDS |
| ATTTGTGTACAATCCTGCAA+TGG | 0.626316 | 3.2:-65564244 | MS.gene08234:CDS |
| GGGAGCCTAACAACTTTCAG+CGG | 0.627758 | 3.2:-65562853 | MS.gene08234:CDS |
| ATGGAGCGAACGAGCAGTTG+GGG | 0.627866 | 3.2:-65564435 | MS.gene08234:CDS |
| AACCTAAGCCATACACCAAG+AGG | 0.629036 | 3.2:+65562243 | None:intergenic |
| GATCATCATTGGTTTCTGGA+CGG | 0.641979 | 3.2:-65562493 | MS.gene08234:CDS |
| GTAGCCGGTTGTTAGACCAA+TGG | 0.643579 | 3.2:+65562879 | None:intergenic |
| TCACTCACATTCTTGAAACA+GGG | 0.660582 | 3.2:+65561707 | None:intergenic |
| ATATAGTTATTATTAGATGG+CGG | 0.673569 | 3.2:+65564210 | None:intergenic |
| GTGTGTCAAAATGTAGATGT+TGG | 0.674681 | 3.2:-65564390 | MS.gene08234:CDS |
| GAAGCTGAGAATCGTGAGTG+TGG | 0.687844 | 3.2:-65564360 | MS.gene08234:CDS |
| TAAATATGCAGGTCTTAACG+AGG | 0.700815 | 3.2:-65563580 | MS.gene08234:intron |
| TGGTCACTACCAATTGACGA+AGG | 0.735981 | 3.2:+65562379 | None:intergenic |
| GTGGTGGTGAAGCTCAGTTG+TGG | 0.736786 | 3.2:-65562284 | MS.gene08234:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAGTTATTATTAGA+TGG | + | chr3.2:65561942-65561961 | None:intergenic | 15.0% |
| !! | ATAATTCCTAAGATTAAAAA+TGG | - | chr3.2:65562951-65562970 | MS.gene08234:CDS | 15.0% |
| !! | TAATATTTCAAAATAGTCTA+TGG | - | chr3.2:65564123-65564142 | MS.gene08234:intron | 15.0% |
| !! | TATATCATTAACAACAAAAA+AGG | + | chr3.2:65562056-65562075 | None:intergenic | 15.0% |
| !! | TTTAATAAAATGCATTTGAT+AGG | + | chr3.2:65563107-65563126 | None:intergenic | 15.0% |
| !!! | TTTATTTCTTTGAATTCTAA+AGG | - | chr3.2:65562711-65562730 | MS.gene08234:intron | 15.0% |
| !! | AATTGTCATAATAAATATGC+AGG | - | chr3.2:65562555-65562574 | MS.gene08234:intron | 20.0% |
| !! | AATTTCAACAACAAATTAGA+CGG | - | chr3.2:65562370-65562389 | MS.gene08234:CDS | 20.0% |
| !! | AGAAATGTGTAAAAAATAGA+AGG | + | chr3.2:65562273-65562292 | None:intergenic | 20.0% |
| !! | ATATAGTTATTATTAGATGG+CGG | + | chr3.2:65561939-65561958 | None:intergenic | 20.0% |
| !! | ATGTGTTAAATTATGTTTAG+TGG | - | chr3.2:65562407-65562426 | MS.gene08234:CDS | 20.0% |
| !! | GAAATAAATGAGTTCAAAAA+TGG | - | chr3.2:65563840-65563859 | MS.gene08234:intron | 20.0% |
| !! | TGATTAATGAATATAACTAG+TGG | - | chr3.2:65562431-65562450 | MS.gene08234:CDS | 20.0% |
| !! | TGCATATTTATTATGACAAT+TGG | + | chr3.2:65562556-65562575 | None:intergenic | 20.0% |
| !! | TTATATATCAAACCAGAAAA+TGG | - | chr3.2:65561876-65561895 | MS.gene08234:CDS | 20.0% |
| !!! | ATAGTTCCATTTTTAATCTT+AGG | + | chr3.2:65562960-65562979 | None:intergenic | 20.0% |
| !!! | ATGCTTTTACTTTGTTTTTT+AGG | - | chr3.2:65562124-65562143 | MS.gene08234:CDS | 20.0% |
| !!! | ATGTTAGTAAATTTAGAGTA+TGG | - | chr3.2:65562774-65562793 | MS.gene08234:intron | 20.0% |
| ! | AAAAGAAAATGAAACGCAAA+TGG | + | chr3.2:65564399-65564418 | None:intergenic | 25.0% |
| ! | AAAGCAATTCAAGTCTTTAT+TGG | - | chr3.2:65562844-65562863 | MS.gene08234:CDS | 25.0% |
| ! | AAATAACCATGGTAGTTATA+AGG | - | chr3.2:65562749-65562768 | MS.gene08234:intron | 25.0% |
| ! | ATAAATGAGTTCAAAAATGG+TGG | - | chr3.2:65563843-65563862 | MS.gene08234:intron | 25.0% |
| ! | CATATTAAGAAGAGTTTGTA+AGG | - | chr3.2:65563592-65563611 | MS.gene08234:intron | 25.0% |
| ! | GGAAATATGTTAAATGAGTT+TGG | - | chr3.2:65562320-65562339 | MS.gene08234:CDS | 25.0% |
| ! | TAAAAGGAGAAAAATAACCA+TGG | - | chr3.2:65562738-65562757 | MS.gene08234:intron | 25.0% |
| ! | TAATGAATATAACTAGTGGA+TGG | - | chr3.2:65562435-65562454 | MS.gene08234:CDS | 25.0% |
| ! | TACTTATTGCAAAAGTCATT+TGG | - | chr3.2:65562589-65562608 | MS.gene08234:intron | 25.0% |
| ! | TTATCATGATGACTAAATCT+TGG | - | chr3.2:65562797-65562816 | MS.gene08234:CDS | 25.0% |
| ! | TTTCTTGATGTTAAAGAGTA+TGG | - | chr3.2:65562288-65562307 | MS.gene08234:CDS | 25.0% |
| !! | ATTGCTATAAACCTGATTTT+TGG | - | chr3.2:65564220-65564239 | MS.gene08234:CDS | 25.0% |
| !! | ATTTGCGTTTCATTTTCTTT+TGG | - | chr3.2:65564398-65564417 | MS.gene08234:CDS | 25.0% |
| !! | GAATTCTAAAGGAGAATAAA+AGG | - | chr3.2:65562722-65562741 | MS.gene08234:intron | 25.0% |
| !! | GAATTTTTGACACATGATTT+TGG | - | chr3.2:65564183-65564202 | MS.gene08234:CDS | 25.0% |
| !! | TTTGCGTTTCATTTTCTTTT+GGG | - | chr3.2:65564399-65564418 | MS.gene08234:CDS | 25.0% |
| !!! | AAAAACTTACTGATTTCTTG+AGG | + | chr3.2:65564046-65564065 | None:intergenic | 25.0% |
| !!! | AAAACTTACTGATTTCTTGA+GGG | + | chr3.2:65564045-65564064 | None:intergenic | 25.0% |
| !!! | ACTTCTATTTTTGCTTTCTT+AGG | - | chr3.2:65563058-65563077 | MS.gene08234:intron | 25.0% |
| !!! | TGGTTTGGTTTTGTTTTTAA+AGG | - | chr3.2:65563215-65563234 | MS.gene08234:intron | 25.0% |
| !!! | TTACTTTGTTTTTTAGGTTC+TGG | - | chr3.2:65562130-65562149 | MS.gene08234:CDS | 25.0% |
| AAGAAGAGTTTGTAAGGAAA+TGG | - | chr3.2:65563598-65563617 | MS.gene08234:intron | 30.0% | |
| AATTGTGATACTGTGATAAC+AGG | - | chr3.2:65564260-65564279 | MS.gene08234:CDS | 30.0% | |
| ACATAACCTTATAACTACCA+TGG | + | chr3.2:65562758-65562777 | None:intergenic | 30.0% | |
| ATAAGTGCGATTTAAAGACT+AGG | - | chr3.2:65563390-65563409 | MS.gene08234:intron | 30.0% | |
| TAATATCACCAACAACACTA+TGG | + | chr3.2:65563790-65563809 | None:intergenic | 30.0% | |
| TGATAGAAAACAAGCATCTT+TGG | - | chr3.2:65564348-65564367 | MS.gene08234:CDS | 30.0% | |
| TGTGAAGACATAAAACAAGT+AGG | - | chr3.2:65562014-65562033 | MS.gene08234:intron | 30.0% | |
| TTGCTTTCTTAGGATCAATA+TGG | - | chr3.2:65563068-65563087 | MS.gene08234:intron | 30.0% | |
| ! | AAATTGTACTAGTTTCCTCA+CGG | - | chr3.2:65562094-65562113 | MS.gene08234:intron | 30.0% |
| ! | CCATTTGTTGAAACAAAGAT+GGG | + | chr3.2:65561984-65562003 | None:intergenic | 30.0% |
| ! | CTGGTTTGATATATAAAGAC+AGG | + | chr3.2:65561872-65561891 | None:intergenic | 30.0% |
| ! | CTTTGTTTCAACAAATGGAA+AGG | - | chr3.2:65561986-65562005 | MS.gene08234:intron | 30.0% |
| ! | CTTTTACACATTTTCCAGAT+TGG | - | chr3.2:65563176-65563195 | MS.gene08234:intron | 30.0% |
| ! | CTTTTATATCGAAACTAAGC+TGG | - | chr3.2:65563730-65563749 | MS.gene08234:intron | 30.0% |
| ! | GTAAGGAAATGGAATTTTGT+AGG | - | chr3.2:65563609-65563628 | MS.gene08234:intron | 30.0% |
| ! | TACACAAATGTTCCATTTTC+TGG | + | chr3.2:65561891-65561910 | None:intergenic | 30.0% |
| ! | TCCATTTGTTGAAACAAAGA+TGG | + | chr3.2:65561985-65562004 | None:intergenic | 30.0% |
| ! | TCTAATCTCATTTTACAGCA+TGG | + | chr3.2:65563539-65563558 | None:intergenic | 30.0% |
| ! | TTTTTGACACATGATTTTGG+AGG | - | chr3.2:65564186-65564205 | MS.gene08234:CDS | 30.0% |
| !! | ACTTGAATTGCTTTTCAATC+AGG | + | chr3.2:65562838-65562857 | None:intergenic | 30.0% |
| !! | GGTGATATTAGCTTTGTTAT+GGG | - | chr3.2:65563800-65563819 | MS.gene08234:intron | 30.0% |
| !! | GTGATATTAGCTTTGTTATG+GGG | - | chr3.2:65563801-65563820 | MS.gene08234:intron | 30.0% |
| !! | TGGTGATATTAGCTTTGTTA+TGG | - | chr3.2:65563799-65563818 | MS.gene08234:intron | 30.0% |
| !!! | TTTTGAAATGGCTTCGATTT+GGG | - | chr3.2:65563970-65563989 | MS.gene08234:CDS | 30.0% |
| !!! | TTTTTGAAATGGCTTCGATT+TGG | - | chr3.2:65563969-65563988 | MS.gene08234:CDS | 30.0% |
| AAAATGGAACTATCTGTTCC+AGG | - | chr3.2:65562967-65562986 | MS.gene08234:intron | 35.0% | |
| AATGAGTTCAAAAATGGTGG+TGG | - | chr3.2:65563846-65563865 | MS.gene08234:intron | 35.0% | |
| AGGACTTCAATTTGGTCTAT+TGG | - | chr3.2:65564280-65564299 | MS.gene08234:CDS | 35.0% | |
| ATTTGTGTACAATCCTGCAA+TGG | - | chr3.2:65561902-65561921 | MS.gene08234:intron | 35.0% | |
| CTACTCGACGCAATTAAATT+AGG | - | chr3.2:65562494-65562513 | MS.gene08234:CDS | 35.0% | |
| GAAACAAATTCCAGTAGCTT+GGG | + | chr3.2:65562173-65562192 | None:intergenic | 35.0% | |
| GCTGCATTAACTAACATGTT+TGG | - | chr3.2:65562871-65562890 | MS.gene08234:CDS | 35.0% | |
| GGACTTCAATTTGGTCTATT+GGG | - | chr3.2:65564281-65564300 | MS.gene08234:CDS | 35.0% | |
| GTAAAAAACGGTATGATCAC+TGG | + | chr3.2:65562635-65562654 | None:intergenic | 35.0% | |
| GTGATAACAGGACTTCAATT+TGG | - | chr3.2:65564272-65564291 | MS.gene08234:CDS | 35.0% | |
| GTGTGTCAAAATGTAGATGT+TGG | - | chr3.2:65561756-65561775 | MS.gene08234:CDS | 35.0% | |
| TAAATATGCAGGTCTTAACG+AGG | - | chr3.2:65562566-65562585 | MS.gene08234:intron | 35.0% | |
| TAAGAATCAGTGAATGCAGA+AGG | + | chr3.2:65562689-65562708 | None:intergenic | 35.0% | |
| TATATCGAAACTAAGCTGGA+AGG | - | chr3.2:65563734-65563753 | MS.gene08234:intron | 35.0% | |
| TGGCAGATCAAGGTAAAAAA+CGG | + | chr3.2:65562647-65562666 | None:intergenic | 35.0% | |
| TGTTTCGTGTCTAACTCATT+TGG | - | chr3.2:65562187-65562206 | MS.gene08234:CDS | 35.0% | |
| TTGTTGAAACAAAGATGGGA+AGG | + | chr3.2:65561980-65561999 | None:intergenic | 35.0% | |
| ! | CCCATCTTTGTTTCAACAAA+TGG | - | chr3.2:65561981-65562000 | MS.gene08234:intron | 35.0% |
| ! | TAAAGAGTATGGTAGATGCT+AGG | - | chr3.2:65562299-65562318 | MS.gene08234:CDS | 35.0% |
| !! | ATATAGCTTTTCAAGGAGGA+AGG | - | chr3.2:65561823-65561842 | MS.gene08234:CDS | 35.0% |
| !! | CAGATTGGTTCCTTTTTGAT+GGG | - | chr3.2:65563191-65563210 | MS.gene08234:intron | 35.0% |
| !! | CTAACTCATTTGGCTGTTTT+TGG | - | chr3.2:65562197-65562216 | MS.gene08234:CDS | 35.0% |
| !!! | ATAAACCTGATTTTTGGTGC+AGG | - | chr3.2:65564226-65564245 | MS.gene08234:CDS | 35.0% |
| AATGCTTCAAGCTCAAAACC+TGG | + | chr3.2:65562988-65563007 | None:intergenic | 40.0% | |
| ACCAAACCATCCCATCAAAA+AGG | + | chr3.2:65563204-65563223 | None:intergenic | 40.0% | |
| AGACTTAACGAGTGCGAAAT+TGG | - | chr3.2:65563939-65563958 | MS.gene08234:CDS | 40.0% | |
| ATTCACCTGCACCAAAAATC+AGG | + | chr3.2:65564234-65564253 | None:intergenic | 40.0% | |
| CAAAAGTCATTTGGACCAAG+TGG | - | chr3.2:65562598-65562617 | MS.gene08234:intron | 40.0% | |
| CCATCAAAAAGGAACCAATC+TGG | + | chr3.2:65563193-65563212 | None:intergenic | 40.0% | |
| CCTTGATCTGCCATCAAATA+TGG | - | chr3.2:65562654-65562673 | MS.gene08234:intron | 40.0% | |
| CGAAACAAATTCCAGTAGCT+TGG | + | chr3.2:65562174-65562193 | None:intergenic | 40.0% | |
| CGACGCAATTAAATTAGGAG+AGG | - | chr3.2:65562499-65562518 | MS.gene08234:CDS | 40.0% | |
| GATACAAGCAGCAGAAACAT+TGG | + | chr3.2:65564006-65564025 | None:intergenic | 40.0% | |
| GGCTAGATGTTCAGATACAT+AGG | + | chr3.2:65563249-65563268 | None:intergenic | 40.0% | |
| GTAGCATTGTCGATCATCAT+TGG | - | chr3.2:65563642-65563661 | MS.gene08234:intron | 40.0% | |
| GTATCTGAACATCTAGCCAT+TGG | - | chr3.2:65563251-65563270 | MS.gene08234:intron | 40.0% | |
| TGCGTCGAGTAGATGATTAA+TGG | + | chr3.2:65562486-65562505 | None:intergenic | 40.0% | |
| ! | CCATATTTGATGGCAGATCA+AGG | + | chr3.2:65562657-65562676 | None:intergenic | 40.0% |
| ! | GCAGGAGATATAGCTTTTCA+AGG | - | chr3.2:65561816-65561835 | MS.gene08234:CDS | 40.0% |
| ! | TCATTTGGACCAAGTGGTTT+TGG | - | chr3.2:65562604-65562623 | MS.gene08234:intron | 40.0% |
| ! | TCCTTTTTGATGGGATGGTT+TGG | - | chr3.2:65563200-65563219 | MS.gene08234:intron | 40.0% |
| ! | TGTTTCTGCTGCTTGTATCA+CGG | - | chr3.2:65564007-65564026 | MS.gene08234:intron | 40.0% |
| ! | TTGGTTCCTTTTTGATGGGA+TGG | - | chr3.2:65563195-65563214 | MS.gene08234:intron | 40.0% |
| !! | ACTTACTGATTTCTTGAGGG+TGG | + | chr3.2:65564042-65564061 | None:intergenic | 40.0% |
| !! | CCAGATTGGTTCCTTTTTGA+TGG | - | chr3.2:65563190-65563209 | MS.gene08234:intron | 40.0% |
| !! | GAGAGCATTTGTCTATGCTA+TGG | - | chr3.2:65564370-65564389 | MS.gene08234:CDS | 40.0% |
| !! | GATCATCATTGGTTTCTGGA+CGG | - | chr3.2:65563653-65563672 | MS.gene08234:intron | 40.0% |
| !! | GGAGATATAGCTTTTCAAGG+AGG | - | chr3.2:65561819-65561838 | MS.gene08234:CDS | 40.0% |
| !! | TGTCGATCATCATTGGTTTC+TGG | - | chr3.2:65563649-65563668 | MS.gene08234:intron | 40.0% |
| !! | TTGGAGGAGGGTTTTTGAAA+TGG | - | chr3.2:65563958-65563977 | MS.gene08234:CDS | 40.0% |
| !!! | TGGCTGTTTTTGGCATTCTT+GGG | - | chr3.2:65562207-65562226 | MS.gene08234:CDS | 40.0% |
| !!! | TTGGCTGTTTTTGGCATTCT+TGG | - | chr3.2:65562206-65562225 | MS.gene08234:CDS | 40.0% |
| AACCTAAGCCATACACCAAG+AGG | + | chr3.2:65563906-65563925 | None:intergenic | 45.0% | |
| ATCAGTGAATGCAGAAGGAG+AGG | + | chr3.2:65562684-65562703 | None:intergenic | 45.0% | |
| CACTGGATCTTGTCTTTGCT+CGG | - | chr3.2:65563353-65563372 | MS.gene08234:intron | 45.0% | |
| CATGAAGTTACCCAAGCTAC+TGG | - | chr3.2:65562160-65562179 | MS.gene08234:CDS | 45.0% | |
| CTTAACGAGTGCGAAATTGG+AGG | - | chr3.2:65563942-65563961 | MS.gene08234:CDS | 45.0% | |
| GAGAGGCGAACCATATTTGA+TGG | + | chr3.2:65562667-65562686 | None:intergenic | 45.0% | |
| GGCAATTCATGTTCCATTGC+AGG | + | chr3.2:65561918-65561937 | None:intergenic | 45.0% | |
| GGTAGTGACCATAGTGTTGT+TGG | - | chr3.2:65563779-65563798 | MS.gene08234:intron | 45.0% | |
| GTCTAACAACCGGCTACTTA+GGG | - | chr3.2:65563273-65563292 | MS.gene08234:intron | 45.0% | |
| TGACAGCTTCCTTCGTCAAT+TGG | - | chr3.2:65563758-65563777 | MS.gene08234:intron | 45.0% | |
| TGGTCACTACCAATTGACGA+AGG | + | chr3.2:65563770-65563789 | None:intergenic | 45.0% | |
| ! | CTAGCCATTGGTCTAACAAC+CGG | - | chr3.2:65563263-65563282 | MS.gene08234:intron | 45.0% |
| ! | TACTAGTTTCCTCACGGTTG+AGG | - | chr3.2:65562100-65562119 | MS.gene08234:intron | 45.0% |
| ! | TCTTTGCTCGGCTTTGTACT+AGG | - | chr3.2:65563365-65563384 | MS.gene08234:intron | 45.0% |
| ! | TTGTTGGACCTCTTGGTGTA+TGG | - | chr3.2:65563895-65563914 | MS.gene08234:intron | 45.0% |
| !! | AAGATGGGAAGGTGTTCTTG+TGG | + | chr3.2:65561969-65561988 | None:intergenic | 45.0% |
| !! | TTGTGGTTAGCCTGCATTGT+TGG | - | chr3.2:65563879-65563898 | MS.gene08234:intron | 45.0% |
| !!! | GGCTGTTTTTGGCATTCTTG+GGG | - | chr3.2:65562208-65562227 | MS.gene08234:CDS | 45.0% |
| AACGAGTGCGAAATTGGAGG+AGG | - | chr3.2:65563945-65563964 | MS.gene08234:CDS | 50.0% | |
| ACCAAGAGGTCCAACAATGC+AGG | + | chr3.2:65563892-65563911 | None:intergenic | 50.0% | |
| ACGAGTGCGAAATTGGAGGA+GGG | - | chr3.2:65563946-65563965 | MS.gene08234:CDS | 50.0% | |
| ATGGGGTGTGAGTAGTGCTT+TGG | - | chr3.2:65563818-65563837 | MS.gene08234:intron | 50.0% | |
| GAAGCTGAGAATCGTGAGTG+TGG | - | chr3.2:65561786-65561805 | MS.gene08234:CDS | 50.0% | |
| GGAAGGAAAAGTGAGAGTGG+TGG | - | chr3.2:65561840-65561859 | MS.gene08234:CDS | 50.0% | |
| GGAGGAAGGAAAAGTGAGAG+TGG | - | chr3.2:65561837-65561856 | MS.gene08234:CDS | 50.0% | |
| GGGAGCCTAACAACTTTCAG+CGG | - | chr3.2:65563293-65563312 | MS.gene08234:intron | 50.0% | |
| GGTCTAACAACCGGCTACTT+AGG | - | chr3.2:65563272-65563291 | MS.gene08234:intron | 50.0% | |
| GTAGCCGGTTGTTAGACCAA+TGG | + | chr3.2:65563270-65563289 | None:intergenic | 50.0% | |
| TCCAGCCGCTGAAAGTTGTT+AGG | + | chr3.2:65563301-65563320 | None:intergenic | 50.0% | |
| TGTTAGGCTCCCTAAGTAGC+CGG | + | chr3.2:65563285-65563304 | None:intergenic | 50.0% | |
| ! | AAAAGCATGCCTCAACCGTG+AGG | + | chr3.2:65562112-65562131 | None:intergenic | 50.0% |
| ! | ATTGGTTTCTGGACGGCGAA+GGG | - | chr3.2:65563660-65563679 | MS.gene08234:intron | 50.0% |
| ! | GACCTCTTGGTGTATGGCTT+AGG | - | chr3.2:65563901-65563920 | MS.gene08234:intron | 50.0% |
| ATGGAGCGAACGAGCAGTTG+GGG | - | chr3.2:65561711-65561730 | MS.gene08234:CDS | 55.0% | |
| CTGGTCACGCCAAAACCACT+TGG | + | chr3.2:65562616-65562635 | None:intergenic | 55.0% | |
| GCCTAACAACTTTCAGCGGC+TGG | - | chr3.2:65563297-65563316 | MS.gene08234:intron | 55.0% | |
| GCCTGCATTGTTGGACCTCT+TGG | - | chr3.2:65563888-65563907 | MS.gene08234:intron | 55.0% | |
| GGACGGCGAAGGGATTCAAA+TGG | - | chr3.2:65563670-65563689 | MS.gene08234:intron | 55.0% | |
| GTTGGGGTTCTGCAGTTAGC+AGG | - | chr3.2:65561727-65561746 | MS.gene08234:CDS | 55.0% | |
| ! | GTGGTGGTGAAGCTCAGTTG+TGG | - | chr3.2:65563862-65563881 | MS.gene08234:intron | 55.0% |
| !! | CATTGGTTTCTGGACGGCGA+AGG | - | chr3.2:65563659-65563678 | MS.gene08234:intron | 55.0% |
| ATGCTCGAGCTCAGTGTCGC+TGG | - | chr3.2:65563329-65563348 | MS.gene08234:intron | 60.0% | |
| CGTGAGTGTGGTTCAGCTGC+AGG | - | chr3.2:65561798-65561817 | MS.gene08234:CDS | 60.0% | |
| ! | AGCTCAGTGTCGCTGGACAC+TGG | - | chr3.2:65563336-65563355 | MS.gene08234:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 65561711 | 65564457 | 65561711 | ID=MS.gene08234 |
| chr3.2 | mRNA | 65561711 | 65564457 | 65561711 | ID=MS.gene08234.t1;Parent=MS.gene08234 |
| chr3.2 | exon | 65564137 | 65564457 | 65564137 | ID=MS.gene08234.t1.exon1;Parent=MS.gene08234.t1 |
| chr3.2 | CDS | 65564137 | 65564457 | 65564137 | ID=cds.MS.gene08234.t1;Parent=MS.gene08234.t1 |
| chr3.2 | exon | 65563939 | 65564022 | 65563939 | ID=MS.gene08234.t1.exon2;Parent=MS.gene08234.t1 |
| chr3.2 | CDS | 65563939 | 65564022 | 65563939 | ID=cds.MS.gene08234.t1;Parent=MS.gene08234.t1 |
| chr3.2 | exon | 65563493 | 65563591 | 65563493 | ID=MS.gene08234.t1.exon3;Parent=MS.gene08234.t1 |
| chr3.2 | CDS | 65563493 | 65563591 | 65563493 | ID=cds.MS.gene08234.t1;Parent=MS.gene08234.t1 |
| chr3.2 | exon | 65562782 | 65562974 | 65562782 | ID=MS.gene08234.t1.exon4;Parent=MS.gene08234.t1 |
| chr3.2 | CDS | 65562782 | 65562974 | 65562782 | ID=cds.MS.gene08234.t1;Parent=MS.gene08234.t1 |
| chr3.2 | exon | 65562113 | 65562537 | 65562113 | ID=MS.gene08234.t1.exon5;Parent=MS.gene08234.t1 |
| chr3.2 | CDS | 65562113 | 65562537 | 65562113 | ID=cds.MS.gene08234.t1;Parent=MS.gene08234.t1 |
| chr3.2 | exon | 65561711 | 65561920 | 65561711 | ID=MS.gene08234.t1.exon6;Parent=MS.gene08234.t1 |
| chr3.2 | CDS | 65561711 | 65561920 | 65561711 | ID=cds.MS.gene08234.t1;Parent=MS.gene08234.t1 |
| Gene Sequence |
| Protein sequence |
