AlfalfaGEDB | MS.gene08374

M. sativa cultivar XinJiangDaYe / MS.gene08374

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08374.t1	RHN42301.1	88.3	247	23	1	1	247	38	278	2.20E-114	421.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08374.t1	Q6NLW5	46.2	80	37	2	168	247	227	300	6.7e-11	69.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08374.t1	A0A396GQ56	88.3	247	23	1	1	247	38	278	1.6e-114	421.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053536	MS.gene08374	0.804624	1.98E-49	-1.69E-46
MS.gene053538	MS.gene08374	0.80587	1.08E-49	-1.69E-46
MS.gene05894	MS.gene08374	0.804154	2.48E-49	-1.69E-46

Showing 1 to 3 of 3 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08374.t1	MTR_3g064750	40.667	150	72	5	100	247	140	274	5.20e-28	108
MS.gene08374.t1	MTR_7g056400	41.414	99	47	2	152	247	216	306	5.65e-16	76.3
MS.gene08374.t1	MTR_8g013095	31.429	140	74	3	111	247	187	307	1.44e-13	69.3

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08374.t1	AT2G01990	48.729	236	81	9	13	247	17	213	3.08e-57	181
MS.gene08374.t1	AT2G01990	48.305	236	82	9	13	247	48	244	1.70e-56	181
MS.gene08374.t1	AT1G14630	46.154	234	70	5	14	247	49	226	2.63e-52	169
MS.gene08374.t1	AT5G48720	37.736	106	57	3	145	247	201	300	2.05e-15	74.3
MS.gene08374.t1	AT5G48720	37.736	106	57	3	145	247	201	300	2.05e-15	74.3
MS.gene08374.t1	AT5G48720	37.736	106	57	3	145	247	167	266	2.24e-15	73.9
MS.gene08374.t1	AT5G48720	37.736	106	57	3	145	247	167	266	2.24e-15	73.9

Showing 1 to 7 of 7 entries

Previous1Next

Find 56 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGACAACAACAACAAGAG+TGG	0.654506	4.1:-17327567	MS.gene08374:CDS
ACATCACCTTCTTCTCCTCC+TGG	0.426500	4.1:+17327521	None:intergenic
ACCAAGTGGGGTGTCTCTGC+TGG	0.412693	4.1:+17327872	None:intergenic
ACCAGCAGAGACACCCCACT+TGG	0.586964	4.1:-17327873	MS.gene08374:intron
ACTGCATGGATCAGATAGAA+AGG	0.538926	4.1:-17328357	MS.gene08374:CDS
ACTGCTTTGCCTGAAAGGCC+TGG	0.473365	4.1:+17327395	None:intergenic
AGGCCAGTAAGGCATCCAGT+TGG	0.681142	4.1:-17327455	MS.gene08374:CDS
AGGCCTTTCAGGCAAAGCAG+TGG	0.658996	4.1:-17327393	MS.gene08374:CDS
AGTAGAAATTCTCCACTGGT+TGG	0.629919	4.1:+17328377	None:intergenic
AGTGGAGAATTTCTACTGCA+TGG	0.572678	4.1:-17328371	MS.gene08374:CDS

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCACTATTATCAGAACCAA+AGG	-	chr4.1:17328663-17328682	MS.gene08374:CDS	30.0%
ATGAACATATAAGCACATTG+AGG	-	chr4.1:17327964-17327983	MS.gene08374:CDS	30.0%
GAAAGAAGAAAAAGGTGGTA+AGG	-	chr4.1:17328406-17328425	MS.gene08374:CDS	35.0%
GATCAGATAGAAAGGATTTG+TGG	-	chr4.1:17327643-17327662	MS.gene08374:intron	35.0%
GATGAGAAAGAAGAAAAAGG+TGG	-	chr4.1:17328401-17328420	MS.gene08374:CDS	35.0%
GGTGATGAGAAAGAAGAAAA+AGG	-	chr4.1:17328398-17328417	MS.gene08374:CDS	35.0%
TAAAATACGGACCACAATTG+CGG	-	chr4.1:17328225-17328244	MS.gene08374:intron	35.0%
TACTACTACTACTAGTGATG+AGG	-	chr4.1:17328377-17328396	MS.gene08374:CDS	35.0%
TATGAAGATGAGGAGGAATT+TGG	+	chr4.1:17328068-17328087	None:intergenic	35.0%
TGGTTATCTTGAAGATGCTT+TGG	-	chr4.1:17327375-17327394	MS.gene08374:CDS	35.0%

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	17327325	17328689	17327325	ID=MS.gene08374
chr4.1	mRNA	17327325	17328689	17327325	ID=MS.gene08374.t1;Parent=MS.gene08374
chr4.1	exon	17328528	17328689	17328528	ID=MS.gene08374.t1.exon1;Parent=MS.gene08374.t1
chr4.1	CDS	17328528	17328689	17328528	ID=cds.MS.gene08374.t1;Parent=MS.gene08374.t1
chr4.1	exon	17328341	17328425	17328341	ID=MS.gene08374.t1.exon2;Parent=MS.gene08374.t1
chr4.1	CDS	17328341	17328425	17328341	ID=cds.MS.gene08374.t1;Parent=MS.gene08374.t1
chr4.1	exon	17327874	17328050	17327874	ID=MS.gene08374.t1.exon3;Parent=MS.gene08374.t1
chr4.1	CDS	17327874	17328050	17327874	ID=cds.MS.gene08374.t1;Parent=MS.gene08374.t1
chr4.1	exon	17327325	17327644	17327325	ID=MS.gene08374.t1.exon4;Parent=MS.gene08374.t1
chr4.1	CDS	17327325	17327644	17327325	ID=cds.MS.gene08374.t1;Parent=MS.gene08374.t1

Gene Sequence

>MS.gene08374

ATGGATGCAAGTGCAGCTTCATTTTCAACTCAAGAGTCTGATTTCTCAACTGGTTATCTTGAAGATGCTTTGGTTGAGTTCGGTGAAAGTTCTAAACGTAGACGCTTGCTTACTGACGATGAACAAAGCAAGAATACTATTTCCATTGATGATTTTGATAAGGTATACATAGTTGAATATTTTTTTTTTTTTCCTTTCATTTTAAGTTTGAAATTCTTGTTGTTCTTGGAAATGAGACTGATTAATATATGTAACTATATATAGTTCTGGAATTTCAACCCTATATGGCACCAACCAGTGGAGAATTTCTACTGCATGGATCAGATAGAAAGGATTTGTGGATTTTCAGGTATTTTTCTCTGCTTTTTACATGCATTCATTTAGATATATTATATGACGTGATGATCATTTTGGTTCAAAAGGTTGTTATTGCAATTCAAACATAAAAAGTTATTGTTTCTTTTGTAATTAATTGATTGAGAATTGAAAAAGGATCCCAAAGAAATCAAAAGAAAAGAATAAAGGAAAAGTACAATGTGAATAATTAATGTCTCATACTCTCTCTTATTTTATTATTATTATTATTATCATTATTATTATTATTTTAATTTACTAATTGGTATATGATGATATAATTAGATGAACATATAAGCACATTGAGGAGTAGAATCATTGAGCAACCAAACATTCTTCTAGAAGACACTAAAACAACAGAAGAGACAATATCAGCATCTGAATCTCCAAATTCCTCCTCATCTTCATACAAAGAATTATTACCATTAACAATATCCAAAACCAGCAGAGACACCCCACTTGGTATACTTTTATATACTCTATTACATATGGTTTTAAATTACAGTTGCAGTCACAATTACGCTGCGGACTTTTATATTAATGTAGTAAAATACGGACCACAATTGCGGTTGCAATGTGCTCTACAAAGACTTCGTAAACTATAATGTTGCGACCGCAATTGCAGTTGCAAACCATAAATTAAAACTATAAATATATCATATGGTTAATTATTATAAATTATTAAAAACAGGAAGTAGTACTACTACTACTAGTGATGAGGTGATGAGAAAGAAGAAAAAGGTGGTAAGGACAACAACAACAAGAGTGGTATATCCATTTGCATTAGTGAAGCCAGGAGGAGAAGAAGGTGATGTGACATTGAATGACATAAATGAAAGGATCTTAATGCCTCCAACAAGGCCAGTAAGGCATCCAGTTGGTGACTTTGCATGTCGGCCATGCGTATCTGCACAAGGTCCAGGCCTTTCAGGCAAAGCAGTGGTGGCCCTTACTAGAATCCACACTCAAGGAAGAAGAGGCACCATCACTATTATCAGAACCAAAGGCTAA

Protein sequence

>MS.gene08374.t1

MDASAASFSTQESDFSTGYLEDALVEFGESSKRRRLLTDDEQSKNTISIDDFDKFWNFNPIWHQPVENFYCMDQIERICGFSDEHISTLRSRIIEQPNILLEDTKTTEETISASESPNSSSSSYKELLPLTISKTSRDTPLGSSTTTTSDEVMRKKKKVVRTTTTRVVYPFALVKPGGEEGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAQGPGLSGKAVVALTRIHTQGRRGTITIIRTKG