Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08460.t1 | XP_003627461.2 | 99.9 | 821 | 1 | 0 | 1 | 821 | 1 | 821 | 0.00E+00 | 1503.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08460.t1 | X5JB51 | 81.4 | 816 | 137 | 4 | 18 | 820 | 12 | 825 | 0.0e+00 | 1228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08460.t1 | G7L9W1 | 99.9 | 821 | 1 | 0 | 1 | 821 | 1 | 821 | 0.0e+00 | 1503.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051020 | MS.gene08460 | 0.959019 | 5.55E-117 | -1.69E-46 |
| MS.gene052678 | MS.gene08460 | 0.832117 | 1.14E-55 | -1.69E-46 |
| MS.gene054585 | MS.gene08460 | 0.803196 | 3.91E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08460.t1 | MTR_8g023330 | 99.878 | 821 | 1 | 0 | 1 | 821 | 1 | 821 | 0.0 | 1675 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08460.t1 | AT5G12370 | 81.005 | 816 | 136 | 5 | 18 | 820 | 12 | 821 | 0.0 | 1313 |
| MS.gene08460.t1 | AT5G12370 | 81.005 | 816 | 136 | 5 | 18 | 820 | 12 | 821 | 0.0 | 1313 |
| MS.gene08460.t1 | AT5G12370 | 80.392 | 816 | 136 | 6 | 18 | 820 | 12 | 816 | 0.0 | 1298 |
Find 184 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGCGTTGTTCGGGAATT+TGG | 0.126049 | 8.2:+72490378 | MS.gene08460:CDS |
| TTAATTTCTGCAGTACTTAA+TGG | 0.176363 | 8.2:+72492601 | MS.gene08460:intron |
| TATTACCTGAGACAAAATTT+TGG | 0.259562 | 8.2:-72494206 | None:intergenic |
| TTCTCGTTCGATGCGTTGTT+CGG | 0.268377 | 8.2:+72490370 | MS.gene08460:CDS |
| AGTTGCAGTTGCTAATTTAC+AGG | 0.271879 | 8.2:+72492888 | MS.gene08460:CDS |
| AGCAGCGGAGGATGCGGATT+TGG | 0.272779 | 8.2:-72490215 | None:intergenic |
| TTGCGCATCTTTCCGAATGC+TGG | 0.291509 | 8.2:-72500730 | None:intergenic |
| TGATTGTTGCAGCCTCTTTA+CGG | 0.294367 | 8.2:-72494892 | None:intergenic |
| GGAGATCTCTAGCAATTTCT+TGG | 0.301544 | 8.2:-72495303 | None:intergenic |
| GCCTAGATTTATTCAACTTC+GGG | 0.314366 | 8.2:+72501026 | MS.gene08460:intron |
| GCAGCGAGTCACCGCCCTTC+TGG | 0.324255 | 8.2:+72495081 | MS.gene08460:CDS |
| CAGCTAGAGAAAGGTGTAGA+TGG | 0.326386 | 8.2:+72492227 | MS.gene08460:intron |
| GACAAAAGCTTCTCAACTTC+AGG | 0.326594 | 8.2:-72490502 | None:intergenic |
| GCAGAGGCCGCGGCTGCTGC+TGG | 0.329546 | 8.2:+72497047 | MS.gene08460:CDS |
| ACAAGGGTTGCCAGTGTAGA+AGG | 0.332707 | 8.2:-72496663 | None:intergenic |
| CATCCTTGTGACTTGAAAAC+AGG | 0.334802 | 8.2:-72495977 | None:intergenic |
| TCATTTGCTGAAGAAGATAT+TGG | 0.334971 | 8.2:+72492805 | MS.gene08460:CDS |
| AGCCAGATTTCTGATTCATC+TGG | 0.335866 | 8.2:+72496150 | MS.gene08460:CDS |
| GCGGACACCAGGCTGGTTCT+AGG | 0.336230 | 8.2:+72494713 | MS.gene08460:CDS |
| AGCCCACGAGCAACATTATT+AGG | 0.340459 | 8.2:-72494758 | None:intergenic |
| GGCTTATCTTTCTCGGGTGC+TGG | 0.343834 | 8.2:+72498363 | MS.gene08460:CDS |
| TCTCGTTCGATGCGTTGTTC+GGG | 0.347784 | 8.2:+72490371 | MS.gene08460:CDS |
| TGGAGAATAGATTGCTTTCT+CGG | 0.349635 | 8.2:+72494134 | MS.gene08460:CDS |
| AGAGATGCCTGCTCATATTC+AGG | 0.349710 | 8.2:-72496005 | None:intergenic |
| ACAAGCATTTCTGTCTGAAT+TGG | 0.352400 | 8.2:+72498420 | MS.gene08460:CDS |
| AAGCGTGACATTACCGAGTA+TGG | 0.355160 | 8.2:+72500497 | MS.gene08460:CDS |
| GGGTTGTGGCTTATCTTTCT+CGG | 0.358924 | 8.2:+72498356 | MS.gene08460:intron |
| TCTTTGCAATTCAGTTCAAC+AGG | 0.365052 | 8.2:+72494624 | MS.gene08460:intron |
| TTCCCTCAAATTAGCAGCTT+CGG | 0.376021 | 8.2:-72496864 | None:intergenic |
| TCTTGTAAATTTACCTTCCA+TGG | 0.376363 | 8.2:+72495126 | MS.gene08460:CDS |
| GCATTAGTTGGCCGGTGGTC+GGG | 0.380439 | 8.2:-72497652 | None:intergenic |
| TCTGCATTCACTGCTTTAGA+AGG | 0.381680 | 8.2:+72498388 | MS.gene08460:CDS |
| TCTGATTCATCTGGGACAAT+TGG | 0.388160 | 8.2:+72496159 | MS.gene08460:CDS |
| TTTGTTCAAGGATTCTTGTA+AGG | 0.398340 | 8.2:+72490525 | MS.gene08460:CDS |
| GGGAAATGCAACTGCGAGCC+GGG | 0.404849 | 8.2:+72492858 | MS.gene08460:CDS |
| CAAAAGCCTAGATATAGAAT+TGG | 0.406005 | 8.2:-72497238 | None:intergenic |
| AAAATTGACATAACTTCGTT+GGG | 0.407066 | 8.2:-72494932 | None:intergenic |
| CATCAGCACCTTCCGCTTCA+AGG | 0.409002 | 8.2:-72490435 | None:intergenic |
| CATCCAAACTGAGTTCTTTG+TGG | 0.409434 | 8.2:+72501073 | MS.gene08460:CDS |
| TAAAATTGACATAACTTCGT+TGG | 0.411385 | 8.2:-72494933 | None:intergenic |
| AGACCACAAAGAACTCAGTT+TGG | 0.414387 | 8.2:-72501076 | None:intergenic |
| TCTCGACATCGATGATTTCA+AGG | 0.414959 | 8.2:+72490252 | MS.gene08460:CDS |
| ATTGCTTGAGCTACGTAAAC+AGG | 0.415837 | 8.2:+72490549 | MS.gene08460:CDS |
| AACCTGTGATTTCTTTGTAC+AGG | 0.417363 | 8.2:-72494787 | None:intergenic |
| CACCTTGTGCAGGCATTAGT+TGG | 0.421090 | 8.2:-72497664 | None:intergenic |
| TCCCAGATGAATCAGAAATC+TGG | 0.424906 | 8.2:-72496152 | None:intergenic |
| TGCGCATCTTTCCGAATGCT+GGG | 0.425011 | 8.2:-72500729 | None:intergenic |
| GGCATTAGTTGGCCGGTGGT+CGG | 0.425834 | 8.2:-72497653 | None:intergenic |
| TCGGGAGCCATTCCATCATC+AGG | 0.427235 | 8.2:-72497634 | None:intergenic |
| TTTGAGGGAAAGATTTGTGC+TGG | 0.437594 | 8.2:+72496877 | MS.gene08460:CDS |
| GGTTGTGGCTTATCTTTCTC+GGG | 0.442710 | 8.2:+72498357 | MS.gene08460:CDS |
| TATCAGCTCAATAGTTTGAC+TGG | 0.445366 | 8.2:-72492508 | None:intergenic |
| GTTTGAAAGCTTTGCGAGGT+TGG | 0.449304 | 8.2:+72492253 | MS.gene08460:CDS |
| TGCTGCTGCTTGTGAAGAAA+TGG | 0.450519 | 8.2:+72497281 | MS.gene08460:CDS |
| GAGTCTTTCAACTTTGTTTG+AGG | 0.453466 | 8.2:+72500701 | MS.gene08460:CDS |
| TGCCTAGATTTATTCAACTT+CGG | 0.454376 | 8.2:+72501025 | MS.gene08460:intron |
| ATGGTTGCTGTACAACGTTC+AGG | 0.460896 | 8.2:+72497092 | MS.gene08460:CDS |
| CAATGTCTTCATTGTTGCTC+CGG | 0.462455 | 8.2:+72500677 | MS.gene08460:CDS |
| TTGAAAACAGGGACTCTGTC+AGG | 0.463495 | 8.2:-72495965 | None:intergenic |
| GAGATCTCTAGCAATTTCTT+GGG | 0.466903 | 8.2:-72495302 | None:intergenic |
| GGTCAGACAGCTGCAAAGAT+AGG | 0.468831 | 8.2:+72492296 | MS.gene08460:CDS |
| TGACCGAAGCTGCTAATTTG+AGG | 0.470299 | 8.2:+72496861 | MS.gene08460:CDS |
| GAAGGTAAATTTACAAGAGA+TGG | 0.473391 | 8.2:-72495121 | None:intergenic |
| GATTATAAATCCCCTGATGA+TGG | 0.475182 | 8.2:+72497622 | MS.gene08460:CDS |
| ATTTACTTACTTGGTCTAGC+AGG | 0.475682 | 8.2:-72496704 | None:intergenic |
| GGGACAATTGGACGCTCAAA+GGG | 0.479565 | 8.2:+72496171 | MS.gene08460:CDS |
| TTGAGGGTACACCCAGCATT+CGG | 0.483355 | 8.2:+72500718 | MS.gene08460:CDS |
| GCTGCAGTATCTTCGCATGC+TGG | 0.484675 | 8.2:+72495261 | MS.gene08460:intron |
| TGATATGCAGGCAGAGGCCG+CGG | 0.485096 | 8.2:+72497037 | MS.gene08460:intron |
| AGTCTTTCAACTTTGTTTGA+GGG | 0.486146 | 8.2:+72500702 | MS.gene08460:CDS |
| GAAAGCTCCATCAGGTCACC+AGG | 0.489966 | 8.2:-72492638 | None:intergenic |
| GTTGCATTTCCCACCGCTGA+TGG | 0.490919 | 8.2:-72492847 | None:intergenic |
| TATAGCTGAAGGTCTTGAAC+GGG | 0.492792 | 8.2:+72496826 | MS.gene08460:CDS |
| GACATAACTTCGTTGGGTGA+AGG | 0.494136 | 8.2:-72494926 | None:intergenic |
| ACTCAGTTTGGATGCCAGCT+TGG | 0.495845 | 8.2:-72501064 | None:intergenic |
| TAGGACTACTTTGTGCAGCC+TGG | 0.497139 | 8.2:-72494739 | None:intergenic |
| GAAGGAAGCAGCGGAGGATG+CGG | 0.499532 | 8.2:-72490221 | None:intergenic |
| TAACTAATAGTTTGTCCAGA+AGG | 0.500273 | 8.2:-72495096 | None:intergenic |
| TGGGAAATGCAACTGCGAGC+CGG | 0.502525 | 8.2:+72492857 | MS.gene08460:CDS |
| ATGGAATGGCTCCCGACCAC+CGG | 0.502883 | 8.2:+72497641 | MS.gene08460:CDS |
| AACAAAGTTGAAAGACTCTC+CGG | 0.505806 | 8.2:-72500696 | None:intergenic |
| TGGGACAATTGGACGCTCAA+AGG | 0.511647 | 8.2:+72496170 | MS.gene08460:CDS |
| TTGTGCAGGCATTAGTTGGC+CGG | 0.512518 | 8.2:-72497660 | None:intergenic |
| AAAGAGGAGAAAGCTCCATC+AGG | 0.514653 | 8.2:-72492646 | None:intergenic |
| AAGTGCCATGCAACATTATG+TGG | 0.515645 | 8.2:+72494652 | MS.gene08460:CDS |
| GACCGAAGCTGCTAATTTGA+GGG | 0.517004 | 8.2:+72496862 | MS.gene08460:CDS |
| TGCAGATGCTCAGCGAGAAA+CGG | 0.519365 | 8.2:+72492485 | MS.gene08460:CDS |
| ACGTCCAATGTTTATTGATG+TGG | 0.519877 | 8.2:+72494679 | MS.gene08460:CDS |
| TAGCAGCCCTGGTGACCTGA+TGG | 0.522478 | 8.2:+72492631 | MS.gene08460:CDS |
| ACATAACTTCGTTGGGTGAA+GGG | 0.523172 | 8.2:-72494925 | None:intergenic |
| GGACTACAAGAGTGCCAAGC+TGG | 0.525447 | 8.2:+72501050 | MS.gene08460:CDS |
| ATGGAGTTCAATAGCAGCCC+TGG | 0.527765 | 8.2:+72492620 | MS.gene08460:CDS |
| ACCTGTGATTTCTTTGTACA+GGG | 0.529358 | 8.2:-72494786 | None:intergenic |
| AGCTAGAGAAAGGTGTAGAT+GGG | 0.530266 | 8.2:+72492228 | MS.gene08460:intron |
| TGCAGATACTGTCCGTAAAG+AGG | 0.531935 | 8.2:+72494880 | MS.gene08460:intron |
| AACTGTAGGATGTGGTGACT+TGG | 0.533812 | 8.2:+72495327 | MS.gene08460:CDS |
| GTAAGCAGCAGCCTCTGCAC+TGG | 0.537932 | 8.2:-72497316 | None:intergenic |
| TGGGTACAAGTGTTAGCCGT+AGG | 0.538929 | 8.2:+72496897 | MS.gene08460:CDS |
| AACTAATAGTTTGTCCAGAA+GGG | 0.539419 | 8.2:-72495095 | None:intergenic |
| AATTTACAGGAATACTGTAA+TGG | 0.540802 | 8.2:+72492901 | MS.gene08460:CDS |
| ATGTGGTGACTTGGATGTTG+AGG | 0.541509 | 8.2:+72495336 | MS.gene08460:CDS |
| CAGGCTGGTTCTAGGTGACC+AGG | 0.542457 | 8.2:+72494721 | MS.gene08460:CDS |
| ACAAGGTTCTGCTAAACCAT+TGG | 0.545268 | 8.2:+72500262 | MS.gene08460:CDS |
| GCTTTCACCAGCAGCAGCCG+CGG | 0.547349 | 8.2:-72497054 | None:intergenic |
| TGAATATCCTGAATATGAGC+AGG | 0.548573 | 8.2:+72495998 | MS.gene08460:CDS |
| AAGTAACGTCCACCTTGTGC+AGG | 0.548777 | 8.2:-72497674 | None:intergenic |
| TAGACAATTATATAAAGTGA+AGG | 0.550063 | 8.2:+72496028 | MS.gene08460:CDS |
| TAAATCCCCTGATGATGGAA+TGG | 0.550669 | 8.2:+72497627 | MS.gene08460:CDS |
| AAGTAATGAATGCGGACACC+AGG | 0.550979 | 8.2:+72494702 | MS.gene08460:CDS |
| TAGGAGCCCACCTTCCTCCA+TGG | 0.552048 | 8.2:-72495143 | None:intergenic |
| GATTCACGTATATCAAGTGT+TGG | 0.552442 | 8.2:+72492275 | MS.gene08460:CDS |
| ATTGCTTTCTGCTGAGCAGA+AGG | 0.554493 | 8.2:+72497594 | MS.gene08460:CDS |
| GCCAGATTTCTGATTCATCT+GGG | 0.555340 | 8.2:+72496151 | MS.gene08460:CDS |
| TACCTTCCATGGAGGAAGGT+GGG | 0.556270 | 8.2:+72495137 | MS.gene08460:CDS |
| CAGCTGCAGCAGCCACCCTA+CGG | 0.557577 | 8.2:-72496913 | None:intergenic |
| GCTAGAGATCTCCGAACTGT+AGG | 0.560698 | 8.2:+72495313 | MS.gene08460:CDS |
| TCATCGATGTCGAGAATGAG+AGG | 0.561802 | 8.2:-72490244 | None:intergenic |
| CGGAGCAACAATGAAGACAT+TGG | 0.565132 | 8.2:-72500676 | None:intergenic |
| CTGGTCACCTAGAACCAGCC+TGG | 0.568405 | 8.2:-72494720 | None:intergenic |
| ACTTCCACATCAATAAACAT+TGG | 0.568426 | 8.2:-72494683 | None:intergenic |
| AATGAATGCGGACACCAGGC+TGG | 0.570633 | 8.2:+72494706 | MS.gene08460:CDS |
| TTTGGCACATTCTGCCATTG+TGG | 0.570870 | 8.2:-72494188 | None:intergenic |
| AGTCACCACATCCTACAGTT+CGG | 0.571064 | 8.2:-72495324 | None:intergenic |
| TGTGGTGACTTGGATGTTGA+GGG | 0.572093 | 8.2:+72495337 | MS.gene08460:CDS |
| TTGAGGGAAAGATTTGTGCT+GGG | 0.572490 | 8.2:+72496878 | MS.gene08460:CDS |
| AGTCCTAATAATGTTGCTCG+TGG | 0.576648 | 8.2:+72494755 | MS.gene08460:CDS |
| TTCTCAACTTCAGGAAACAA+AGG | 0.579565 | 8.2:-72490493 | None:intergenic |
| GCAGCATGTGCACCATCCAC+AGG | 0.579600 | 8.2:-72497264 | None:intergenic |
| GGTCTTGAACGGGCTAGAGA+TGG | 0.581137 | 8.2:+72496836 | MS.gene08460:CDS |
| GAGAGGGAAGGAAGCAGCGG+AGG | 0.581601 | 8.2:-72490227 | None:intergenic |
| AATTTACCTTCCATGGAGGA+AGG | 0.581654 | 8.2:+72495133 | MS.gene08460:CDS |
| CTTTGCAATTCAGTTCAACA+GGG | 0.582185 | 8.2:+72494625 | MS.gene08460:intron |
| GTTAGTCAATATATAGCTGA+AGG | 0.582343 | 8.2:+72496815 | MS.gene08460:CDS |
| GATCTCCGAACTGTAGGATG+TGG | 0.583156 | 8.2:+72495319 | MS.gene08460:CDS |
| AGGTCTTCTAATTTGAACGA+TGG | 0.584353 | 8.2:-72490415 | None:intergenic |
| GGGTACAAGTGTTAGCCGTA+GGG | 0.584528 | 8.2:+72496898 | MS.gene08460:CDS |
| ATATAGCTGAAGGTCTTGAA+CGG | 0.587830 | 8.2:+72496825 | MS.gene08460:CDS |
| TATAACTGCACCATCAGCGG+TGG | 0.589728 | 8.2:+72492837 | MS.gene08460:CDS |
| CAACTGCAACTTCTAATCCC+CGG | 0.592935 | 8.2:-72492876 | None:intergenic |
| TTACCTTCCATGGAGGAAGG+TGG | 0.594101 | 8.2:+72495136 | MS.gene08460:CDS |
| CGGGAGCCATTCCATCATCA+GGG | 0.594514 | 8.2:-72497633 | None:intergenic |
| AGCCCACCTTCCTCCATGGA+AGG | 0.599178 | 8.2:-72495139 | None:intergenic |
| TGATGATAGCCGTGTTGCTG+AGG | 0.600567 | 8.2:+72492673 | MS.gene08460:CDS |
| ACGCACAAACTCTCCATACT+CGG | 0.602894 | 8.2:-72500510 | None:intergenic |
| AACTTCAGGAAACAAAGGAC+TGG | 0.603994 | 8.2:-72490488 | None:intergenic |
| CTGTTCAAGACTCTAAGCAT+CGG | 0.604463 | 8.2:+72491751 | MS.gene08460:CDS |
| TGCAGGCATTAGTTGGCCGG+TGG | 0.606547 | 8.2:-72497657 | None:intergenic |
| GCAGAGGCTGCTGCTTACAA+AGG | 0.607001 | 8.2:+72497321 | MS.gene08460:CDS |
| TTAGGGAAATCGCTTGCACA+AGG | 0.607632 | 8.2:+72500245 | MS.gene08460:intron |
| GTCCTAATAATGTTGCTCGT+GGG | 0.607795 | 8.2:+72494756 | MS.gene08460:CDS |
| ATCCTTGTGACTTGAAAACA+GGG | 0.615448 | 8.2:-72495976 | None:intergenic |
| AATGAGAGGGAAGGAAGCAG+CGG | 0.618027 | 8.2:-72490230 | None:intergenic |
| TACAGCAATGTCCAGTGCAG+AGG | 0.619762 | 8.2:+72497305 | MS.gene08460:CDS |
| TGGTATAACTGCACCATCAG+CGG | 0.620234 | 8.2:+72492834 | MS.gene08460:CDS |
| CAAATTAGAAGACCTTGAAG+CGG | 0.623512 | 8.2:+72490423 | MS.gene08460:CDS |
| GGAAATGCAACTGCGAGCCG+GGG | 0.626908 | 8.2:+72492859 | MS.gene08460:CDS |
| TAGATTTATTCAACTTCGGG+AGG | 0.627343 | 8.2:+72501029 | MS.gene08460:intron |
| AAAGATAGGAGATCATCTCC+AGG | 0.636715 | 8.2:+72492310 | MS.gene08460:CDS |
| TACAAGTGTTAGCCGTAGGG+TGG | 0.637190 | 8.2:+72496901 | MS.gene08460:CDS |
| TTAGAAGACCTTGAAGCGGA+AGG | 0.640761 | 8.2:+72490427 | MS.gene08460:CDS |
| TGTTGCCACATAATGTTGCA+TGG | 0.641848 | 8.2:-72494657 | None:intergenic |
| GGCCAACTAATGCCTGCACA+AGG | 0.644940 | 8.2:+72497662 | MS.gene08460:CDS |
| TAGAAGCAGCCTCAGCAACA+CGG | 0.645175 | 8.2:-72492682 | None:intergenic |
| TGTGATTTCTTTGTACAGGG+AGG | 0.651555 | 8.2:-72494783 | None:intergenic |
| CATCGATGTCGAGAATGAGA+GGG | 0.653616 | 8.2:-72490243 | None:intergenic |
| ATAACTGCACCATCAGCGGT+GGG | 0.654091 | 8.2:+72492838 | MS.gene08460:CDS |
| GAAAAGAGAATTGACCACAA+TGG | 0.656741 | 8.2:+72494174 | MS.gene08460:CDS |
| TATTGAAACTGTCATGGCTG+AGG | 0.659500 | 8.2:+72497356 | MS.gene08460:CDS |
| GCATTCGGAAAGATGCGCAA+AGG | 0.660387 | 8.2:+72500733 | MS.gene08460:CDS |
| TAATAGTTTGTCCAGAAGGG+CGG | 0.661141 | 8.2:-72495092 | None:intergenic |
| GAAGAAGATATTGGAAGACA+TGG | 0.664292 | 8.2:+72492814 | MS.gene08460:CDS |
| GATGTCGAGAATGAGAGGGA+AGG | 0.673517 | 8.2:-72490239 | None:intergenic |
| TCCCTGTACAAAGAAATCAC+AGG | 0.674837 | 8.2:+72494785 | MS.gene08460:CDS |
| TGTAGAAGAAATTACCTGTG+AGG | 0.676230 | 8.2:-72496292 | None:intergenic |
| GCATCGGAGGACACTAGCTG+AGG | 0.679017 | 8.2:+72491767 | MS.gene08460:CDS |
| TTCAAGACTCTAAGCATCGG+AGG | 0.680226 | 8.2:+72491754 | MS.gene08460:CDS |
| TTTGCAATTCAGTTCAACAG+GGG | 0.681285 | 8.2:+72494626 | MS.gene08460:intron |
| ACAGTGTATTGAAACTGTCA+TGG | 0.681812 | 8.2:+72497350 | MS.gene08460:CDS |
| GGGAGCCATTCCATCATCAG+GGG | 0.688385 | 8.2:-72497632 | None:intergenic |
| TGTAAATTTACCTTCCATGG+AGG | 0.688790 | 8.2:+72495129 | MS.gene08460:CDS |
| GGTTGTTTGAAAGCTTTGCG+AGG | 0.691348 | 8.2:+72492249 | MS.gene08460:CDS |
| TTGTAACAGAGTTTGTGCGT+TGG | 0.693074 | 8.2:+72496235 | MS.gene08460:CDS |
| AAAGCTCCATCAGGTCACCA+GGG | 0.716414 | 8.2:-72492637 | None:intergenic |
| TGATGTGGAAGTAATGAATG+CGG | 0.755616 | 8.2:+72494694 | MS.gene08460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 72490172 | 72501101 | 72490172 | ID=MS.gene08460 |
| chr8.2 | mRNA | 72490172 | 72501101 | 72490172 | ID=MS.gene08460.t1;Parent=MS.gene08460 |
| chr8.2 | exon | 72490172 | 72490273 | 72490172 | ID=MS.gene08460.t1.exon1;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72490172 | 72490273 | 72490172 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72490364 | 72490570 | 72490364 | ID=MS.gene08460.t1.exon2;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72490364 | 72490570 | 72490364 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72491714 | 72491788 | 72491714 | ID=MS.gene08460.t1.exon3;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72491714 | 72491788 | 72491714 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72492230 | 72492331 | 72492230 | ID=MS.gene08460.t1.exon4;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72492230 | 72492331 | 72492230 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72492483 | 72492533 | 72492483 | ID=MS.gene08460.t1.exon5;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72492483 | 72492533 | 72492483 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72492614 | 72492719 | 72492614 | ID=MS.gene08460.t1.exon6;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72492614 | 72492719 | 72492614 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72492803 | 72492922 | 72492803 | ID=MS.gene08460.t1.exon7;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72492803 | 72492922 | 72492803 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72494131 | 72494222 | 72494131 | ID=MS.gene08460.t1.exon8;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72494131 | 72494222 | 72494131 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72494638 | 72494806 | 72494638 | ID=MS.gene08460.t1.exon9;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72494638 | 72494806 | 72494638 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72494885 | 72494961 | 72494885 | ID=MS.gene08460.t1.exon10;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72494885 | 72494961 | 72494885 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72495070 | 72495168 | 72495070 | ID=MS.gene08460.t1.exon11;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72495070 | 72495168 | 72495070 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72495268 | 72495358 | 72495268 | ID=MS.gene08460.t1.exon12;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72495268 | 72495358 | 72495268 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72495964 | 72496049 | 72495964 | ID=MS.gene08460.t1.exon13;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72495964 | 72496049 | 72495964 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72496129 | 72496299 | 72496129 | ID=MS.gene08460.t1.exon14;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72496129 | 72496299 | 72496129 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72496663 | 72496716 | 72496663 | ID=MS.gene08460.t1.exon15;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72496663 | 72496716 | 72496663 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72496815 | 72496943 | 72496815 | ID=MS.gene08460.t1.exon16;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72496815 | 72496943 | 72496815 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72497047 | 72497139 | 72497047 | ID=MS.gene08460.t1.exon17;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72497047 | 72497139 | 72497047 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72497231 | 72497377 | 72497231 | ID=MS.gene08460.t1.exon18;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72497231 | 72497377 | 72497231 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72497586 | 72497683 | 72497586 | ID=MS.gene08460.t1.exon19;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72497586 | 72497683 | 72497586 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72498357 | 72498441 | 72498357 | ID=MS.gene08460.t1.exon20;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72498357 | 72498441 | 72498357 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72500249 | 72500307 | 72500249 | ID=MS.gene08460.t1.exon21;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72500249 | 72500307 | 72500249 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72500481 | 72500579 | 72500481 | ID=MS.gene08460.t1.exon22;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72500481 | 72500579 | 72500481 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72500671 | 72500754 | 72500671 | ID=MS.gene08460.t1.exon23;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72500671 | 72500754 | 72500671 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| chr8.2 | exon | 72501032 | 72501101 | 72501032 | ID=MS.gene08460.t1.exon24;Parent=MS.gene08460.t1 |
| chr8.2 | CDS | 72501032 | 72501101 | 72501032 | ID=cds.MS.gene08460.t1;Parent=MS.gene08460.t1 |
| Gene Sequence |
| Protein sequence |
