Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051020.t1 | XP_003627461.2 | 99.9 | 821 | 1 | 0 | 1 | 821 | 1 | 821 | 0.00E+00 | 1503.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051020.t1 | X5JB51 | 81.4 | 816 | 137 | 4 | 18 | 820 | 12 | 825 | 0.0e+00 | 1228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051020.t1 | G7L9W1 | 99.9 | 821 | 1 | 0 | 1 | 821 | 1 | 821 | 0.0e+00 | 1503.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049209 | MS.gene051020 | 0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene051020 | MS.gene052676 | 0.809996 | 1.44E-50 | -1.69E-46 |
| MS.gene051020 | MS.gene052678 | 0.838528 | 2.73E-57 | -1.69E-46 |
| MS.gene051020 | MS.gene054585 | 0.80112 | 1.05E-48 | -1.69E-46 |
| MS.gene051020 | MS.gene08460 | 0.959019 | 5.55E-117 | -1.69E-46 |
| MS.gene051020 | MS.gene09078 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene051020 | MS.gene09818 | 0.84615 | 2.60E-59 | -1.69E-46 |
| MS.gene051020 | MS.gene20018 | 0.807746 | 4.35E-50 | -1.69E-46 |
| MS.gene051020 | MS.gene22490 | 0.805802 | 1.12E-49 | -1.69E-46 |
| MS.gene051020 | MS.gene26731 | 0.823457 | 1.37E-53 | -1.69E-46 |
| MS.gene051020 | MS.gene38302 | 0.803337 | 3.66E-49 | -1.69E-46 |
| MS.gene051020 | MS.gene49370 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene051020 | MS.gene60550 | 0.815721 | 7.99E-52 | -1.69E-46 |
| MS.gene051020 | MS.gene81044 | 0.903187 | 4.50E-79 | -1.69E-46 |
| MS.gene051020 | MS.gene82037 | 0.813224 | 2.85E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051020.t1 | MTR_8g023330 | 99.878 | 821 | 1 | 0 | 1 | 821 | 1 | 821 | 0.0 | 1675 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051020.t1 | AT5G12370 | 81.005 | 816 | 136 | 5 | 18 | 820 | 12 | 821 | 0.0 | 1313 |
| MS.gene051020.t1 | AT5G12370 | 81.005 | 816 | 136 | 5 | 18 | 820 | 12 | 821 | 0.0 | 1313 |
| MS.gene051020.t1 | AT5G12370 | 80.392 | 816 | 136 | 6 | 18 | 820 | 12 | 816 | 0.0 | 1298 |
Find 184 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGCGTTGTTCGGGAATT+TGG | 0.126049 | 8.3:+68806708 | MS.gene051020:CDS |
| TTAATTTCTGCAGTACTTAA+TGG | 0.176363 | 8.3:+68808932 | MS.gene051020:intron |
| TATTACCTGAGACAAAATTT+TGG | 0.259562 | 8.3:-68810537 | None:intergenic |
| TTCTCGTTCGATGCGTTGTT+CGG | 0.268377 | 8.3:+68806700 | MS.gene051020:CDS |
| AGTTGCAGTTGCTAATTTAC+AGG | 0.271879 | 8.3:+68809219 | MS.gene051020:CDS |
| AGCAGCGGAGGATGCGGATT+TGG | 0.272779 | 8.3:-68806545 | None:intergenic |
| TTGCGCATCTTTCCGAATGC+TGG | 0.291509 | 8.3:-68817047 | None:intergenic |
| TGATTGTTGCAGCCTCTTTA+CGG | 0.294367 | 8.3:-68811209 | None:intergenic |
| GGAGATCTCTAGCAATTTCT+TGG | 0.301544 | 8.3:-68811620 | None:intergenic |
| GCCTAGATTTATTCAACTTC+GGG | 0.314366 | 8.3:+68817343 | MS.gene051020:intron |
| GCAGCGAGTCACCGCCCTTC+TGG | 0.324255 | 8.3:+68811398 | MS.gene051020:CDS |
| CAGCTAGAGAAAGGTGTAGA+TGG | 0.326386 | 8.3:+68808558 | MS.gene051020:intron |
| GACAAAAGCTTCTCAACTTC+AGG | 0.326594 | 8.3:-68806832 | None:intergenic |
| GCAGAGGCCGCGGCTGCTGC+TGG | 0.329546 | 8.3:+68813366 | MS.gene051020:CDS |
| ACAAGGGTTGCCAGTGTAGA+AGG | 0.332707 | 8.3:-68812982 | None:intergenic |
| CATCCTTGTGACTTGAAAAC+AGG | 0.334802 | 8.3:-68812296 | None:intergenic |
| TCATTTGCTGAAGAAGATAT+TGG | 0.334971 | 8.3:+68809136 | MS.gene051020:CDS |
| AGCCAGATTTCTGATTCATC+TGG | 0.335866 | 8.3:+68812469 | MS.gene051020:CDS |
| GCGGACACCAGGCTGGTTCT+AGG | 0.336230 | 8.3:+68811030 | MS.gene051020:CDS |
| AGCCCACGAGCAACATTATT+AGG | 0.340459 | 8.3:-68811075 | None:intergenic |
| GGCTTATCTTTCTCGGGTGC+TGG | 0.343834 | 8.3:+68814682 | MS.gene051020:CDS |
| TCTCGTTCGATGCGTTGTTC+GGG | 0.347784 | 8.3:+68806701 | MS.gene051020:CDS |
| TGGAGAATAGATTGCTTTCT+CGG | 0.349635 | 8.3:+68810465 | MS.gene051020:CDS |
| AGAGATGCCTGCTCATATTC+AGG | 0.349710 | 8.3:-68812324 | None:intergenic |
| ACAAGCATTTCTGTCTGAAT+TGG | 0.352400 | 8.3:+68814739 | MS.gene051020:CDS |
| AAGCGTGACATTACCGAGTA+TGG | 0.355160 | 8.3:+68816814 | MS.gene051020:CDS |
| GGGTTGTGGCTTATCTTTCT+CGG | 0.358924 | 8.3:+68814675 | MS.gene051020:intron |
| TCTTTGCAATTCAGTTCAAC+AGG | 0.365052 | 8.3:+68810941 | MS.gene051020:intron |
| TTCCCTCAAATTAGCAGCTT+CGG | 0.376021 | 8.3:-68813183 | None:intergenic |
| TCTTGTAAATTTACCTTCCA+TGG | 0.376363 | 8.3:+68811443 | MS.gene051020:CDS |
| GCATTAGTTGGCCGGTGGTC+GGG | 0.380439 | 8.3:-68813971 | None:intergenic |
| TCTGCATTCACTGCTTTAGA+AGG | 0.381680 | 8.3:+68814707 | MS.gene051020:CDS |
| TCTGATTCATCTGGGACAAT+TGG | 0.388160 | 8.3:+68812478 | MS.gene051020:CDS |
| TTTGTTCAAGGATTCTTGTA+AGG | 0.398340 | 8.3:+68806855 | MS.gene051020:CDS |
| GGGAAATGCAACTGCGAGCC+GGG | 0.404849 | 8.3:+68809189 | MS.gene051020:CDS |
| CAAAAGCCTAGATATAGAAT+TGG | 0.406005 | 8.3:-68813557 | None:intergenic |
| AAAATTGACATAACTTCGTT+GGG | 0.407066 | 8.3:-68811249 | None:intergenic |
| CATCAGCACCTTCCGCTTCA+AGG | 0.409002 | 8.3:-68806765 | None:intergenic |
| CATCCAAACTGAGTTCTTTG+TGG | 0.409434 | 8.3:+68817390 | MS.gene051020:CDS |
| TAAAATTGACATAACTTCGT+TGG | 0.411385 | 8.3:-68811250 | None:intergenic |
| AGACCACAAAGAACTCAGTT+TGG | 0.414387 | 8.3:-68817393 | None:intergenic |
| TCTCGACATCGATGATTTCA+AGG | 0.414959 | 8.3:+68806582 | MS.gene051020:CDS |
| ATTGCTTGAGCTACGTAAAC+AGG | 0.415837 | 8.3:+68806879 | MS.gene051020:CDS |
| AACCTGTGATTTCTTTGTAC+AGG | 0.417363 | 8.3:-68811104 | None:intergenic |
| CACCTTGTGCAGGCATTAGT+TGG | 0.421090 | 8.3:-68813983 | None:intergenic |
| TCCCAGATGAATCAGAAATC+TGG | 0.424906 | 8.3:-68812471 | None:intergenic |
| TGCGCATCTTTCCGAATGCT+GGG | 0.425011 | 8.3:-68817046 | None:intergenic |
| GGCATTAGTTGGCCGGTGGT+CGG | 0.425834 | 8.3:-68813972 | None:intergenic |
| TCGGGAGCCATTCCATCATC+AGG | 0.427235 | 8.3:-68813953 | None:intergenic |
| TTTGAGGGAAAGATTTGTGC+TGG | 0.437594 | 8.3:+68813196 | MS.gene051020:CDS |
| GGTTGTGGCTTATCTTTCTC+GGG | 0.442710 | 8.3:+68814676 | MS.gene051020:CDS |
| TATCAGCTCAATAGTTTGAC+TGG | 0.445366 | 8.3:-68808839 | None:intergenic |
| GTTTGAAAGCTTTGCGAGGT+TGG | 0.449304 | 8.3:+68808584 | MS.gene051020:CDS |
| TGCTGCTGCTTGTGAAGAAA+TGG | 0.450519 | 8.3:+68813600 | MS.gene051020:CDS |
| GAGTCTTTCAACTTTGTTTG+AGG | 0.453466 | 8.3:+68817018 | MS.gene051020:CDS |
| TGCCTAGATTTATTCAACTT+CGG | 0.454376 | 8.3:+68817342 | MS.gene051020:intron |
| ATGGTTGCTGTACAACGTTC+AGG | 0.460896 | 8.3:+68813411 | MS.gene051020:CDS |
| CAATGTCTTCATTGTTGCTC+CGG | 0.462455 | 8.3:+68816994 | MS.gene051020:CDS |
| TTGAAAACAGGGACTCTGTC+AGG | 0.463495 | 8.3:-68812284 | None:intergenic |
| GAGATCTCTAGCAATTTCTT+GGG | 0.466903 | 8.3:-68811619 | None:intergenic |
| GGTCAGACAGCTGCAAAGAT+AGG | 0.468831 | 8.3:+68808627 | MS.gene051020:CDS |
| TGACCGAAGCTGCTAATTTG+AGG | 0.470299 | 8.3:+68813180 | MS.gene051020:CDS |
| GAAGGTAAATTTACAAGAGA+TGG | 0.473391 | 8.3:-68811438 | None:intergenic |
| GATTATAAATCCCCTGATGA+TGG | 0.475182 | 8.3:+68813941 | MS.gene051020:CDS |
| ATTTACTTACTTGGTCTAGC+AGG | 0.475682 | 8.3:-68813023 | None:intergenic |
| GGGACAATTGGACGCTCAAA+GGG | 0.479565 | 8.3:+68812490 | MS.gene051020:CDS |
| TTGAGGGTACACCCAGCATT+CGG | 0.483355 | 8.3:+68817035 | MS.gene051020:CDS |
| GCTGCAGTATCTTCGCATGC+TGG | 0.484675 | 8.3:+68811578 | MS.gene051020:intron |
| TGATATGCAGGCAGAGGCCG+CGG | 0.485096 | 8.3:+68813356 | MS.gene051020:intron |
| AGTCTTTCAACTTTGTTTGA+GGG | 0.486146 | 8.3:+68817019 | MS.gene051020:CDS |
| GAAAGCTCCATCAGGTCACC+AGG | 0.489966 | 8.3:-68808969 | None:intergenic |
| GTTGCATTTCCCACCGCTGA+TGG | 0.490919 | 8.3:-68809178 | None:intergenic |
| TATAGCTGAAGGTCTTGAAC+GGG | 0.492792 | 8.3:+68813145 | MS.gene051020:CDS |
| GACATAACTTCGTTGGGTGA+AGG | 0.494136 | 8.3:-68811243 | None:intergenic |
| ACTCAGTTTGGATGCCAGCT+TGG | 0.495845 | 8.3:-68817381 | None:intergenic |
| TAGGACTACTTTGTGCAGCC+TGG | 0.497139 | 8.3:-68811056 | None:intergenic |
| GAAGGAAGCAGCGGAGGATG+CGG | 0.499532 | 8.3:-68806551 | None:intergenic |
| TAACTAATAGTTTGTCCAGA+AGG | 0.500273 | 8.3:-68811413 | None:intergenic |
| TGGGAAATGCAACTGCGAGC+CGG | 0.502525 | 8.3:+68809188 | MS.gene051020:CDS |
| ATGGAATGGCTCCCGACCAC+CGG | 0.502883 | 8.3:+68813960 | MS.gene051020:CDS |
| AACAAAGTTGAAAGACTCTC+CGG | 0.505806 | 8.3:-68817013 | None:intergenic |
| TGGGACAATTGGACGCTCAA+AGG | 0.511647 | 8.3:+68812489 | MS.gene051020:CDS |
| TTGTGCAGGCATTAGTTGGC+CGG | 0.512518 | 8.3:-68813979 | None:intergenic |
| AAAGAGGAGAAAGCTCCATC+AGG | 0.514653 | 8.3:-68808977 | None:intergenic |
| AAGTGCCATGCAACATTATG+TGG | 0.515645 | 8.3:+68810969 | MS.gene051020:CDS |
| GACCGAAGCTGCTAATTTGA+GGG | 0.517004 | 8.3:+68813181 | MS.gene051020:CDS |
| TGCAGATGCTCAGCGAGAAA+CGG | 0.519365 | 8.3:+68808816 | MS.gene051020:CDS |
| ACGTCCAATGTTTATTGATG+TGG | 0.519877 | 8.3:+68810996 | MS.gene051020:CDS |
| TAGCAGCCCTGGTGACCTGA+TGG | 0.522478 | 8.3:+68808962 | MS.gene051020:CDS |
| ACATAACTTCGTTGGGTGAA+GGG | 0.523172 | 8.3:-68811242 | None:intergenic |
| GGACTACAAGAGTGCCAAGC+TGG | 0.525447 | 8.3:+68817367 | MS.gene051020:CDS |
| ATGGAGTTCAATAGCAGCCC+TGG | 0.527765 | 8.3:+68808951 | MS.gene051020:CDS |
| ACCTGTGATTTCTTTGTACA+GGG | 0.529358 | 8.3:-68811103 | None:intergenic |
| AGCTAGAGAAAGGTGTAGAT+GGG | 0.530266 | 8.3:+68808559 | MS.gene051020:intron |
| TGCAGATACTGTCCGTAAAG+AGG | 0.531935 | 8.3:+68811197 | MS.gene051020:intron |
| AACTGTAGGATGTGGTGACT+TGG | 0.533812 | 8.3:+68811644 | MS.gene051020:CDS |
| GTAAGCAGCAGCCTCTGCAC+TGG | 0.537932 | 8.3:-68813635 | None:intergenic |
| TGGGTACAAGTGTTAGCCGT+AGG | 0.538929 | 8.3:+68813216 | MS.gene051020:CDS |
| AACTAATAGTTTGTCCAGAA+GGG | 0.539419 | 8.3:-68811412 | None:intergenic |
| AATTTACAGGAATACTGTAA+TGG | 0.540802 | 8.3:+68809232 | MS.gene051020:CDS |
| ATGTGGTGACTTGGATGTTG+AGG | 0.541509 | 8.3:+68811653 | MS.gene051020:CDS |
| CAGGCTGGTTCTAGGTGACC+AGG | 0.542457 | 8.3:+68811038 | MS.gene051020:CDS |
| ACAAGGTTCTGCTAAACCAT+TGG | 0.545268 | 8.3:+68816581 | MS.gene051020:CDS |
| GCTTTCACCAGCAGCAGCCG+CGG | 0.547349 | 8.3:-68813373 | None:intergenic |
| TGAATATCCTGAATATGAGC+AGG | 0.548573 | 8.3:+68812317 | MS.gene051020:CDS |
| AAGTAACGTCCACCTTGTGC+AGG | 0.548777 | 8.3:-68813993 | None:intergenic |
| TAGACAATTATATAAAGTGA+AGG | 0.550063 | 8.3:+68812347 | MS.gene051020:CDS |
| TAAATCCCCTGATGATGGAA+TGG | 0.550669 | 8.3:+68813946 | MS.gene051020:CDS |
| AAGTAATGAATGCGGACACC+AGG | 0.550979 | 8.3:+68811019 | MS.gene051020:CDS |
| TAGGAGCCCACCTTCCTCCA+TGG | 0.552048 | 8.3:-68811460 | None:intergenic |
| GATTCACGTATATCAAGTGT+TGG | 0.552442 | 8.3:+68808606 | MS.gene051020:CDS |
| ATTGCTTTCTGCTGAGCAGA+AGG | 0.554493 | 8.3:+68813913 | MS.gene051020:CDS |
| GCCAGATTTCTGATTCATCT+GGG | 0.555340 | 8.3:+68812470 | MS.gene051020:CDS |
| TACCTTCCATGGAGGAAGGT+GGG | 0.556270 | 8.3:+68811454 | MS.gene051020:CDS |
| CAGCTGCAGCAGCCACCCTA+CGG | 0.557577 | 8.3:-68813232 | None:intergenic |
| GCTAGAGATCTCCGAACTGT+AGG | 0.560698 | 8.3:+68811630 | MS.gene051020:CDS |
| TCATCGATGTCGAGAATGAG+AGG | 0.561802 | 8.3:-68806574 | None:intergenic |
| CGGAGCAACAATGAAGACAT+TGG | 0.565132 | 8.3:-68816993 | None:intergenic |
| CTGGTCACCTAGAACCAGCC+TGG | 0.568405 | 8.3:-68811037 | None:intergenic |
| ACTTCCACATCAATAAACAT+TGG | 0.568426 | 8.3:-68811000 | None:intergenic |
| AATGAATGCGGACACCAGGC+TGG | 0.570633 | 8.3:+68811023 | MS.gene051020:CDS |
| TTTGGCACATTCTGCCATTG+TGG | 0.570870 | 8.3:-68810519 | None:intergenic |
| AGTCACCACATCCTACAGTT+CGG | 0.571064 | 8.3:-68811641 | None:intergenic |
| TGTGGTGACTTGGATGTTGA+GGG | 0.572093 | 8.3:+68811654 | MS.gene051020:CDS |
| TTGAGGGAAAGATTTGTGCT+GGG | 0.572490 | 8.3:+68813197 | MS.gene051020:CDS |
| AGTCCTAATAATGTTGCTCG+TGG | 0.576648 | 8.3:+68811072 | MS.gene051020:CDS |
| TTCTCAACTTCAGGAAACAA+AGG | 0.579565 | 8.3:-68806823 | None:intergenic |
| GCAGCATGTGCACCATCCAC+AGG | 0.579600 | 8.3:-68813583 | None:intergenic |
| GGTCTTGAACGGGCTAGAGA+TGG | 0.581137 | 8.3:+68813155 | MS.gene051020:CDS |
| GAGAGGGAAGGAAGCAGCGG+AGG | 0.581601 | 8.3:-68806557 | None:intergenic |
| AATTTACCTTCCATGGAGGA+AGG | 0.581654 | 8.3:+68811450 | MS.gene051020:CDS |
| CTTTGCAATTCAGTTCAACA+GGG | 0.582185 | 8.3:+68810942 | MS.gene051020:intron |
| GTTAGTCAATATATAGCTGA+AGG | 0.582343 | 8.3:+68813134 | MS.gene051020:CDS |
| GATCTCCGAACTGTAGGATG+TGG | 0.583156 | 8.3:+68811636 | MS.gene051020:CDS |
| AGGTCTTCTAATTTGAACGA+TGG | 0.584353 | 8.3:-68806745 | None:intergenic |
| GGGTACAAGTGTTAGCCGTA+GGG | 0.584528 | 8.3:+68813217 | MS.gene051020:CDS |
| ATATAGCTGAAGGTCTTGAA+CGG | 0.587830 | 8.3:+68813144 | MS.gene051020:CDS |
| TATAACTGCACCATCAGCGG+TGG | 0.589728 | 8.3:+68809168 | MS.gene051020:CDS |
| CAACTGCAACTTCTAATCCC+CGG | 0.592935 | 8.3:-68809207 | None:intergenic |
| TTACCTTCCATGGAGGAAGG+TGG | 0.594101 | 8.3:+68811453 | MS.gene051020:CDS |
| CGGGAGCCATTCCATCATCA+GGG | 0.594514 | 8.3:-68813952 | None:intergenic |
| AGCCCACCTTCCTCCATGGA+AGG | 0.599178 | 8.3:-68811456 | None:intergenic |
| TGATGATAGCCGTGTTGCTG+AGG | 0.600567 | 8.3:+68809004 | MS.gene051020:CDS |
| ACGCACAAACTCTCCATACT+CGG | 0.602894 | 8.3:-68816827 | None:intergenic |
| AACTTCAGGAAACAAAGGAC+TGG | 0.603994 | 8.3:-68806818 | None:intergenic |
| CTGTTCAAGACTCTAAGCAT+CGG | 0.604463 | 8.3:+68808081 | MS.gene051020:CDS |
| TGCAGGCATTAGTTGGCCGG+TGG | 0.606547 | 8.3:-68813976 | None:intergenic |
| GCAGAGGCTGCTGCTTACAA+AGG | 0.607001 | 8.3:+68813640 | MS.gene051020:CDS |
| TTAGGGAAATCGCTTGCACA+AGG | 0.607632 | 8.3:+68816564 | MS.gene051020:intron |
| GTCCTAATAATGTTGCTCGT+GGG | 0.607795 | 8.3:+68811073 | MS.gene051020:CDS |
| ATCCTTGTGACTTGAAAACA+GGG | 0.615448 | 8.3:-68812295 | None:intergenic |
| AATGAGAGGGAAGGAAGCAG+CGG | 0.618027 | 8.3:-68806560 | None:intergenic |
| TACAGCAATGTCCAGTGCAG+AGG | 0.619762 | 8.3:+68813624 | MS.gene051020:CDS |
| TGGTATAACTGCACCATCAG+CGG | 0.620234 | 8.3:+68809165 | MS.gene051020:CDS |
| CAAATTAGAAGACCTTGAAG+CGG | 0.623512 | 8.3:+68806753 | MS.gene051020:CDS |
| GGAAATGCAACTGCGAGCCG+GGG | 0.626908 | 8.3:+68809190 | MS.gene051020:CDS |
| TAGATTTATTCAACTTCGGG+AGG | 0.627343 | 8.3:+68817346 | MS.gene051020:intron |
| AAAGATAGGAGATCATCTCC+AGG | 0.636715 | 8.3:+68808641 | MS.gene051020:CDS |
| TACAAGTGTTAGCCGTAGGG+TGG | 0.637190 | 8.3:+68813220 | MS.gene051020:CDS |
| TTAGAAGACCTTGAAGCGGA+AGG | 0.640761 | 8.3:+68806757 | MS.gene051020:CDS |
| TGTTGCCACATAATGTTGCA+TGG | 0.641848 | 8.3:-68810974 | None:intergenic |
| GGCCAACTAATGCCTGCACA+AGG | 0.644940 | 8.3:+68813981 | MS.gene051020:CDS |
| TAGAAGCAGCCTCAGCAACA+CGG | 0.645175 | 8.3:-68809013 | None:intergenic |
| TGTGATTTCTTTGTACAGGG+AGG | 0.651555 | 8.3:-68811100 | None:intergenic |
| CATCGATGTCGAGAATGAGA+GGG | 0.653616 | 8.3:-68806573 | None:intergenic |
| ATAACTGCACCATCAGCGGT+GGG | 0.654091 | 8.3:+68809169 | MS.gene051020:CDS |
| GAAAAGAGAATTGACCACAA+TGG | 0.656741 | 8.3:+68810505 | MS.gene051020:CDS |
| TATTGAAACTGTCATGGCTG+AGG | 0.659500 | 8.3:+68813675 | MS.gene051020:CDS |
| GCATTCGGAAAGATGCGCAA+AGG | 0.660387 | 8.3:+68817050 | MS.gene051020:CDS |
| TAATAGTTTGTCCAGAAGGG+CGG | 0.661141 | 8.3:-68811409 | None:intergenic |
| GAAGAAGATATTGGAAGACA+TGG | 0.664292 | 8.3:+68809145 | MS.gene051020:CDS |
| GATGTCGAGAATGAGAGGGA+AGG | 0.673517 | 8.3:-68806569 | None:intergenic |
| TCCCTGTACAAAGAAATCAC+AGG | 0.674837 | 8.3:+68811102 | MS.gene051020:CDS |
| TGTAGAAGAAATTACCTGTG+AGG | 0.676230 | 8.3:-68812611 | None:intergenic |
| GCATCGGAGGACACTAGCTG+AGG | 0.679017 | 8.3:+68808097 | MS.gene051020:CDS |
| TTCAAGACTCTAAGCATCGG+AGG | 0.680226 | 8.3:+68808084 | MS.gene051020:CDS |
| TTTGCAATTCAGTTCAACAG+GGG | 0.681285 | 8.3:+68810943 | MS.gene051020:intron |
| ACAGTGTATTGAAACTGTCA+TGG | 0.681812 | 8.3:+68813669 | MS.gene051020:CDS |
| GGGAGCCATTCCATCATCAG+GGG | 0.688385 | 8.3:-68813951 | None:intergenic |
| TGTAAATTTACCTTCCATGG+AGG | 0.688790 | 8.3:+68811446 | MS.gene051020:CDS |
| GGTTGTTTGAAAGCTTTGCG+AGG | 0.691348 | 8.3:+68808580 | MS.gene051020:CDS |
| TTGTAACAGAGTTTGTGCGT+TGG | 0.693074 | 8.3:+68812554 | MS.gene051020:CDS |
| AAAGCTCCATCAGGTCACCA+GGG | 0.716414 | 8.3:-68808968 | None:intergenic |
| TGATGTGGAAGTAATGAATG+CGG | 0.755616 | 8.3:+68811011 | MS.gene051020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 68806502 | 68817418 | 68806502 | ID=MS.gene051020 |
| chr8.3 | mRNA | 68806502 | 68817418 | 68806502 | ID=MS.gene051020.t1;Parent=MS.gene051020 |
| chr8.3 | exon | 68806502 | 68806603 | 68806502 | ID=MS.gene051020.t1.exon1;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68806502 | 68806603 | 68806502 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68806694 | 68806900 | 68806694 | ID=MS.gene051020.t1.exon2;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68806694 | 68806900 | 68806694 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68808044 | 68808118 | 68808044 | ID=MS.gene051020.t1.exon3;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68808044 | 68808118 | 68808044 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68808561 | 68808662 | 68808561 | ID=MS.gene051020.t1.exon4;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68808561 | 68808662 | 68808561 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68808814 | 68808864 | 68808814 | ID=MS.gene051020.t1.exon5;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68808814 | 68808864 | 68808814 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68808945 | 68809050 | 68808945 | ID=MS.gene051020.t1.exon6;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68808945 | 68809050 | 68808945 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68809134 | 68809253 | 68809134 | ID=MS.gene051020.t1.exon7;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68809134 | 68809253 | 68809134 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68810462 | 68810553 | 68810462 | ID=MS.gene051020.t1.exon8;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68810462 | 68810553 | 68810462 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68810955 | 68811123 | 68810955 | ID=MS.gene051020.t1.exon9;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68810955 | 68811123 | 68810955 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68811202 | 68811278 | 68811202 | ID=MS.gene051020.t1.exon10;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68811202 | 68811278 | 68811202 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68811387 | 68811485 | 68811387 | ID=MS.gene051020.t1.exon11;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68811387 | 68811485 | 68811387 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68811585 | 68811675 | 68811585 | ID=MS.gene051020.t1.exon12;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68811585 | 68811675 | 68811585 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68812283 | 68812368 | 68812283 | ID=MS.gene051020.t1.exon13;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68812283 | 68812368 | 68812283 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68812448 | 68812618 | 68812448 | ID=MS.gene051020.t1.exon14;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68812448 | 68812618 | 68812448 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68812982 | 68813035 | 68812982 | ID=MS.gene051020.t1.exon15;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68812982 | 68813035 | 68812982 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68813134 | 68813262 | 68813134 | ID=MS.gene051020.t1.exon16;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68813134 | 68813262 | 68813134 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68813366 | 68813458 | 68813366 | ID=MS.gene051020.t1.exon17;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68813366 | 68813458 | 68813366 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68813550 | 68813696 | 68813550 | ID=MS.gene051020.t1.exon18;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68813550 | 68813696 | 68813550 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68813905 | 68814002 | 68813905 | ID=MS.gene051020.t1.exon19;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68813905 | 68814002 | 68813905 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68814676 | 68814760 | 68814676 | ID=MS.gene051020.t1.exon20;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68814676 | 68814760 | 68814676 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68816568 | 68816626 | 68816568 | ID=MS.gene051020.t1.exon21;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68816568 | 68816626 | 68816568 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68816798 | 68816896 | 68816798 | ID=MS.gene051020.t1.exon22;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68816798 | 68816896 | 68816798 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68816988 | 68817071 | 68816988 | ID=MS.gene051020.t1.exon23;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68816988 | 68817071 | 68816988 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| chr8.3 | exon | 68817349 | 68817418 | 68817349 | ID=MS.gene051020.t1.exon24;Parent=MS.gene051020.t1 |
| chr8.3 | CDS | 68817349 | 68817418 | 68817349 | ID=cds.MS.gene051020.t1;Parent=MS.gene051020.t1 |
| Gene Sequence |
| Protein sequence |
