AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08468

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08468.t1 MTR_8g023510 95.273 275 11 1 1 273 3 277 0.0 528
MS.gene08468.t1 MTR_3g463370 60.142 281 64 5 1 273 1 241 7.31e-102 297
MS.gene08468.t1 MTR_4g023810 62.712 236 80 5 22 255 25 254 1.16e-98 290
MS.gene08468.t1 MTR_8g068040 38.672 256 142 7 10 255 11 261 1.17e-49 164
MS.gene08468.t1 MTR_5g031100 38.346 266 136 6 17 255 14 278 2.63e-48 162
MS.gene08468.t1 MTR_8g068030 37.308 260 144 7 10 255 11 265 9.21e-48 160
MS.gene08468.t1 MTR_5g031160 39.200 250 132 8 23 255 41 287 2.38e-45 154
MS.gene08468.t1 MTR_5g031120 37.453 267 138 7 17 255 14 279 1.34e-44 152
MS.gene08468.t1 MTR_3g054170 41.762 261 141 8 1 256 1 255 5.04e-44 150
MS.gene08468.t1 MTR_5g031140 38.750 240 131 7 31 255 48 286 1.67e-43 149
MS.gene08468.t1 MTR_3g054180 42.353 255 132 8 10 256 14 261 1.04e-42 147
MS.gene08468.t1 MTR_8g068050 38.697 261 142 9 9 255 17 273 1.04e-42 154
MS.gene08468.t1 MTR_3g047140 39.313 262 147 8 7 262 13 268 9.14e-42 145
MS.gene08468.t1 MTR_5g031090 38.683 243 129 10 31 255 35 275 1.24e-39 139
MS.gene08468.t1 MTR_3g027280 40.316 253 130 10 12 251 18 262 2.88e-39 138
MS.gene08468.t1 MTR_5g031030 37.903 248 137 9 22 255 30 274 4.08e-39 138
MS.gene08468.t1 MTR_8g067980 40.833 240 117 12 31 253 26 257 5.21e-38 134
MS.gene08468.t1 MTR_1g090973 37.269 271 154 11 6 268 11 273 3.15e-37 133
MS.gene08468.t1 MTR_0684s0020 38.060 268 151 9 10 268 15 276 3.81e-36 130
MS.gene08468.t1 MTR_0163s0020 38.060 268 151 9 10 268 16 277 3.90e-36 130
MS.gene08468.t1 MTR_4g093080 35.294 272 163 10 7 270 8 274 1.76e-35 134
MS.gene08468.t1 MTR_4g093140 36.260 262 142 10 6 255 16 264 1.49e-34 132
MS.gene08468.t1 MTR_1g090957 37.302 252 127 10 12 251 18 250 1.62e-34 125
MS.gene08468.t1 MTR_1g090943 38.521 257 144 11 6 255 11 260 1.87e-34 125
MS.gene08468.t1 MTR_4g093110 35.115 262 145 9 6 255 16 264 2.57e-34 131
MS.gene08468.t1 MTR_8g067940 33.955 268 155 8 9 255 15 281 1.33e-33 124
MS.gene08468.t1 MTR_3g054200 37.698 252 146 8 10 256 10 255 3.02e-33 122
MS.gene08468.t1 MTR_8g067990 37.247 247 131 13 31 260 26 265 3.42e-32 119
MS.gene08468.t1 MTR_4g093070 33.333 279 150 10 2 257 3 268 3.95e-31 122
MS.gene08468.t1 MTR_8g067930 33.212 274 169 7 1 265 1 269 2.17e-30 120
MS.gene08468.t1 MTR_8g067690 34.335 233 143 5 32 255 63 294 3.35e-30 119
MS.gene08468.t1 MTR_8g067630 40.187 214 117 8 32 236 33 244 9.38e-30 117
MS.gene08468.t1 MTR_8g067720 31.227 269 172 6 3 263 2 265 1.32e-29 117
MS.gene08468.t1 MTR_1g090930 37.500 248 129 10 17 250 23 258 9.24e-29 111
MS.gene08468.t1 MTR_1g014240 33.054 239 144 8 32 256 40 276 6.95e-27 109
MS.gene08468.t1 MTR_8g067735 33.761 234 146 6 32 256 46 279 7.80e-27 109
MS.gene08468.t1 MTR_7g115740 32.812 256 149 10 18 257 14 262 1.01e-26 109
MS.gene08468.t1 MTR_1g090937 33.730 252 144 10 15 255 21 260 2.84e-25 101
MS.gene08468.t1 MTR_8g067960 33.929 224 130 9 44 255 24 241 4.13e-25 100
MS.gene08468.t1 MTR_4g093040 36.170 188 109 6 67 244 73 259 1.86e-24 102
MS.gene08468.t1 MTR_7g116130 36.816 201 109 7 67 255 67 261 3.05e-24 102
MS.gene08468.t1 MTR_1g090960 33.840 263 120 12 6 256 11 231 3.19e-23 95.5
MS.gene08468.t1 MTR_4g093040 36.517 178 102 6 77 244 1 177 4.03e-23 99.0
MS.gene08468.t1 MTR_1g048360 33.810 210 119 8 55 253 60 260 1.09e-21 94.7
MS.gene08468.t1 MTR_7g062940 31.621 253 153 8 16 251 6 255 6.16e-21 92.4
MS.gene08468.t1 MTR_7g063030 31.349 252 151 7 16 251 15 260 1.73e-19 88.2
MS.gene08468.t1 MTR_7g063030 33.333 225 132 6 43 251 32 254 2.36e-19 87.8
MS.gene08468.t1 MTR_4g093050 32.692 260 143 12 15 251 12 262 2.84e-19 87.8
MS.gene08468.t1 MTR_7g062950 32.444 225 135 5 43 251 32 255 3.24e-19 87.4
MS.gene08468.t1 MTR_7g062770 31.250 256 155 6 16 251 6 260 2.76e-18 84.7
MS.gene08468.t1 MTR_5g035910 30.827 266 156 10 9 251 3 263 1.42e-17 82.8
MS.gene08468.t1 MTR_1g052275 30.888 259 155 7 14 251 3 258 1.46e-17 82.8
MS.gene08468.t1 MTR_7g062890 31.496 254 153 8 16 251 6 256 2.79e-17 81.6
MS.gene08468.t1 MTR_5g025020 30.698 215 123 7 66 262 85 291 4.88e-17 81.3
MS.gene08468.t1 MTR_4g056320 29.119 261 124 10 10 256 17 230 6.27e-17 78.6
MS.gene08468.t1 MTR_5g077100 32.292 192 114 5 69 253 68 250 1.39e-16 79.7
MS.gene08468.t1 MTR_7g062700 31.518 257 151 8 16 251 6 258 2.36e-16 79.0
MS.gene08468.t1 MTR_7g063010 28.627 255 164 6 13 251 4 256 9.24e-16 77.4
MS.gene08468.t1 MTR_5g068770 30.242 248 139 12 32 253 38 277 2.66e-15 75.9
MS.gene08468.t1 MTR_7g062750 28.906 256 159 7 16 251 6 258 3.22e-15 75.9
MS.gene08468.t1 MTR_3g068025 30.385 260 158 7 14 251 9 267 1.00e-14 74.3
MS.gene08468.t1 MTR_2g013720 30.483 269 153 11 5 251 6 262 1.34e-13 70.9
MS.gene08468.t1 MTR_8g068050 33.333 132 80 4 9 134 17 146 1.84e-13 70.5
MS.gene08468.t1 MTR_7g062920 29.688 256 157 7 16 251 6 258 3.16e-13 69.7
MS.gene08468.t1 MTR_7g062660 31.225 253 154 7 16 251 6 255 1.17e-12 68.2
MS.gene08468.t1 MTR_7g062900 28.125 224 140 5 43 251 34 251 1.60e-12 67.8
MS.gene08468.t1 MTR_1g099260 26.423 246 150 9 29 253 14 249 5.45e-12 66.2
MS.gene08468.t1 MTR_7g062680 29.694 229 140 5 43 251 32 259 8.11e-12 65.5
MS.gene08468.t1 MTR_7g062990 27.059 255 168 5 14 251 6 259 1.72e-11 64.7
MS.gene08468.t1 MTR_5g095970 29.688 256 158 7 8 253 4 247 1.93e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08468.t1 AT5G65600 34.222 225 136 7 32 244 38 262 2.88e-25 105
MS.gene08468.t1 AT5G10530 33.846 260 154 10 11 258 4 257 3.81e-25 104
MS.gene08468.t1 AT4G02410 32.510 243 147 6 25 251 22 263 1.74e-23 100
MS.gene08468.t1 AT2G37710 31.111 225 138 6 43 251 38 261 3.05e-22 96.3
MS.gene08468.t1 AT4G02420 31.321 265 157 9 6 251 2 260 4.20e-22 95.9
MS.gene08468.t1 AT2G29250 31.022 274 153 10 5 254 3 264 8.88e-22 95.1
MS.gene08468.t1 AT5G01540 31.600 250 143 9 30 253 31 278 3.59e-21 93.2
MS.gene08468.t1 AT3G55550 31.120 241 151 4 26 252 20 259 8.02e-21 92.4
MS.gene08468.t1 AT4G29050 33.628 226 122 8 48 251 53 272 1.84e-20 91.3
MS.gene08468.t1 AT4G29050 33.628 226 122 8 48 251 39 258 2.08e-20 91.3
MS.gene08468.t1 AT3G53810 30.488 246 152 7 24 252 19 262 2.62e-19 87.8
MS.gene08468.t1 AT5G01550 29.537 281 165 10 2 253 14 290 7.85e-19 86.7
MS.gene08468.t1 AT5G01560 29.880 251 141 10 32 253 30 274 5.66e-18 84.0
MS.gene08468.t1 AT3G15356 29.098 244 141 8 40 252 28 270 2.30e-17 80.1
MS.gene08468.t1 AT3G08870 30.364 247 145 10 32 253 57 301 1.13e-16 80.1
MS.gene08468.t1 AT3G08870 30.364 247 145 10 32 253 36 280 1.28e-16 80.1
MS.gene08468.t1 AT5G03140 30.392 204 128 6 56 249 58 257 1.51e-16 79.7
MS.gene08468.t1 AT5G60280 28.794 257 158 9 12 251 8 256 1.77e-16 79.3
MS.gene08468.t1 AT5G55830 30.189 265 148 12 10 253 18 266 1.97e-16 79.3
MS.gene08468.t1 AT5G60310 29.719 249 146 9 23 251 18 257 3.54e-16 78.6
MS.gene08468.t1 AT2G29220 29.927 274 147 12 11 254 6 264 3.81e-16 78.6
MS.gene08468.t1 AT3G16530 27.007 274 165 10 10 252 1 270 1.16e-15 75.5
MS.gene08468.t1 AT3G45430 31.679 262 137 13 26 260 22 268 1.40e-15 77.0
MS.gene08468.t1 AT3G45430 31.679 262 137 13 26 260 22 268 1.40e-15 77.0
MS.gene08468.t1 AT3G45430 31.679 262 137 13 26 260 22 268 1.40e-15 77.0
MS.gene08468.t1 AT4G04960 31.687 243 143 9 25 249 16 253 2.21e-14 73.2
MS.gene08468.t1 AT5G06740 31.000 200 121 9 64 253 78 270 2.75e-14 73.2
MS.gene08468.t1 AT5G06740 31.000 200 121 9 64 253 66 258 2.83e-14 72.8
MS.gene08468.t1 AT5G60300 30.328 244 138 12 30 251 25 258 4.18e-14 72.4
MS.gene08468.t1 AT5G60300 30.328 244 138 12 30 251 25 258 4.18e-14 72.4
MS.gene08468.t1 AT4G04960 31.687 243 143 9 25 249 16 253 4.23e-14 72.4
MS.gene08468.t1 AT5G60300 30.328 244 138 12 30 251 25 258 5.14e-14 72.4
MS.gene08468.t1 AT1G70110 27.706 231 138 10 43 251 33 256 3.96e-13 69.7
MS.gene08468.t1 AT3G45330 28.400 250 161 7 25 258 23 270 8.47e-13 68.6
MS.gene08468.t1 AT5G03350 27.615 239 142 8 44 252 31 268 8.68e-13 67.4
MS.gene08468.t1 AT3G59700 25.641 234 155 7 34 249 17 249 1.62e-12 67.8
MS.gene08468.t1 AT2G43700 29.796 245 145 8 29 253 14 251 1.80e-12 67.4
MS.gene08468.t1 AT5G42120 29.658 263 152 10 13 253 7 258 2.49e-12 67.0
MS.gene08468.t1 AT5G60320 28.462 260 156 13 16 251 9 262 4.76e-12 66.2
MS.gene08468.t1 AT3G53380 32.000 250 150 10 10 249 5 244 1.74e-11 64.7
MS.gene08468.t1 AT3G45440 29.412 255 152 10 16 251 64 309 7.75e-11 62.8
MS.gene08468.t1 AT3G45440 29.412 255 152 10 16 251 11 256 9.51e-11 62.4
MS.gene08468.t1 AT3G45440 29.412 255 152 10 16 251 11 256 9.51e-11 62.4
MS.gene08468.t1 AT3G45440 29.412 255 152 10 16 251 11 256 9.51e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAAGATTAGATTCTTT+TGG 0.238719 8.2:-72355899 None:intergenic
CAGAACATGATATTCGTTAT+TGG 0.243919 8.2:+72356504 MS.gene08468:CDS
ATTCTGCTCCTATTCATATC+TGG 0.244024 8.2:+72355997 MS.gene08468:CDS
CCAATATGTCTATTTATCTT+TGG 0.248398 8.2:-72356251 None:intergenic
CTTCATCTTGTTATTCAATA+AGG 0.258451 8.2:+72355827 MS.gene08468:CDS
TCTGCAACATTGGTACTATA+AGG 0.302134 8.2:-72356080 None:intergenic
AAGTACTACACCATGGGTTT+TGG 0.317266 8.2:+72356301 MS.gene08468:CDS
CTTCCCTGTTGAGGTAGTTA+TGG 0.356339 8.2:-72355928 None:intergenic
ATCGGTCGTGCAGGATTTCT+CGG 0.366627 8.2:+72356149 MS.gene08468:CDS
CTGCAACATTGGTACTATAA+GGG 0.370832 8.2:-72356079 None:intergenic
TTGCTATCCCAGATATGAAT+AGG 0.375848 8.2:-72356005 None:intergenic
CATATCTGGGATAGCAAAAC+AGG 0.382485 8.2:+72356011 MS.gene08468:CDS
TACCAATGTTGCAGATGGTT+TGG 0.397603 8.2:+72356088 MS.gene08468:CDS
CCAAAGATAAATAGACATAT+TGG 0.401782 8.2:+72356251 MS.gene08468:CDS
TCACTAAGGATATAACTATC+AGG 0.422347 8.2:-72356407 None:intergenic
TAACAAGATGAAGACTGTTA+AGG 0.442595 8.2:-72355817 None:intergenic
AAGGCAGTCAAGAACTCTAT+TGG 0.450440 8.2:+72355963 MS.gene08468:CDS
AATGCCATAACTACCTCAAC+AGG 0.458397 8.2:+72355924 MS.gene08468:CDS
TTCTGCTCCTATTCATATCT+GGG 0.459119 8.2:+72355998 MS.gene08468:CDS
GAGAGGCTAATGTTGTGATA+AGG 0.465611 8.2:+72356333 MS.gene08468:CDS
GCTAAACTTTGTGATGGTAA+AGG 0.469149 8.2:-72355871 None:intergenic
GGCCAAACCATCTGCAACAT+TGG 0.479659 8.2:-72356090 None:intergenic
GGTACTATAAGGGGCAGTTA+TGG 0.483439 8.2:-72356069 None:intergenic
CCACAAAACATCGGTCGTGC+AGG 0.494269 8.2:+72356140 MS.gene08468:CDS
AATAGAGTTCTTGACTGCCT+TGG 0.497569 8.2:-72355961 None:intergenic
ATATTGTTCCTGAGTGGGTA+AGG 0.498309 8.2:+72356447 MS.gene08468:CDS
TGAAAGATATTGTTCCTGAG+TGG 0.520340 8.2:+72356441 MS.gene08468:CDS
GAAAGATATTGTTCCTGAGT+GGG 0.522902 8.2:+72356442 MS.gene08468:CDS
ATATAACTATCAGGAAGTCC+TGG 0.527887 8.2:-72356398 None:intergenic
ATCGGTTTCTCAGCAGCCAC+TGG 0.531685 8.2:+72356470 MS.gene08468:CDS
TATAGTACCAATGTTGCAGA+TGG 0.532177 8.2:+72356083 MS.gene08468:CDS
TTTGGCCTTCTTCATTGCAC+CGG 0.538662 8.2:+72356106 MS.gene08468:CDS
GTCAATAAGTACTACACCAT+GGG 0.541013 8.2:+72356295 MS.gene08468:CDS
GATGAAGACTGTTAAGGAGA+TGG 0.541381 8.2:-72355811 None:intergenic
ATCGACCGGTGCAATGAAGA+AGG 0.544745 8.2:-72356111 None:intergenic
GTTCCTGAGTGGGTAAGGAT+CGG 0.550149 8.2:+72356452 MS.gene08468:CDS
AGGTAGTTATGGCATTGCCT+TGG 0.557576 8.2:-72355917 None:intergenic
AAGTTGTAACTTCCCTGTTG+AGG 0.568898 8.2:-72355937 None:intergenic
CAAAAGAATCTAATCTTCCA+AGG 0.573374 8.2:+72355900 MS.gene08468:CDS
TCAGGAACAATATCTTTCAA+AGG 0.574670 8.2:-72356437 None:intergenic
AAACCGATCCTTACCCACTC+AGG 0.577788 8.2:-72356455 None:intergenic
TGCAACATTGGTACTATAAG+GGG 0.579494 8.2:-72356078 None:intergenic
GTCTTGGCTAAACTTTGTGA+TGG 0.583455 8.2:-72355877 None:intergenic
TCAAAGGCACAACATCACTA+AGG 0.583560 8.2:-72356421 None:intergenic
TTCTGCGAATTCTGCACCAG+TGG 0.611525 8.2:-72356486 None:intergenic
ATAAGGGGCAGTTATGGCAA+AGG 0.637611 8.2:-72356063 None:intergenic
GATACTCAGCCACAAAACAT+CGG 0.646194 8.2:+72356131 MS.gene08468:CDS
AGTCAATAAGTACTACACCA+TGG 0.664426 8.2:+72356294 MS.gene08468:CDS
AGGGAAGTTACAACTTACCA+AGG 0.684795 8.2:+72355944 MS.gene08468:CDS
GGATAGCAAAACAGGAGACG+TGG 0.685503 8.2:+72356019 MS.gene08468:CDS
ATGCCATAACTACCTCAACA+GGG 0.753652 8.2:+72355925 MS.gene08468:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGTTGTTATTAAAAACT+AGG - chr8.2:72356550-72356569 None:intergenic 20.0%
! CCAAAGATAAATAGACATAT+TGG + chr8.2:72356251-72356270 MS.gene08468:CDS 25.0%
! CCAATATGTCTATTTATCTT+TGG - chr8.2:72356254-72356273 None:intergenic 25.0%
!! AGACACTTTTCATAATACTT+GGG + chr8.2:72356226-72356245 MS.gene08468:CDS 25.0%
!! TAGACACTTTTCATAATACT+TGG + chr8.2:72356225-72356244 MS.gene08468:CDS 25.0%
!!! CTTCATCTTGTTATTCAATA+AGG + chr8.2:72355827-72355846 MS.gene08468:CDS 25.0%
CAAAAGAATCTAATCTTCCA+AGG + chr8.2:72355900-72355919 MS.gene08468:CDS 30.0%
CAGAACATGATATTCGTTAT+TGG + chr8.2:72356504-72356523 MS.gene08468:CDS 30.0%
TAACAAGATGAAGACTGTTA+AGG - chr8.2:72355820-72355839 None:intergenic 30.0%
TCACTAAGGATATAACTATC+AGG - chr8.2:72356410-72356429 None:intergenic 30.0%
TCAGGAACAATATCTTTCAA+AGG - chr8.2:72356440-72356459 None:intergenic 30.0%
! AGATTAGATTCTTTTGGTCT+TGG - chr8.2:72355896-72355915 None:intergenic 30.0%
! CTTGGAAGATTAGATTCTTT+TGG - chr8.2:72355902-72355921 None:intergenic 30.0%
AGTCAATAAGTACTACACCA+TGG + chr8.2:72356294-72356313 MS.gene08468:CDS 35.0%
ATATAACTATCAGGAAGTCC+TGG - chr8.2:72356401-72356420 None:intergenic 35.0%
ATTCTGCTCCTATTCATATC+TGG + chr8.2:72355997-72356016 MS.gene08468:CDS 35.0%
CTGCAACATTGGTACTATAA+GGG - chr8.2:72356082-72356101 None:intergenic 35.0%
GAAAGATATTGTTCCTGAGT+GGG + chr8.2:72356442-72356461 MS.gene08468:CDS 35.0%
GCTAAACTTTGTGATGGTAA+AGG - chr8.2:72355874-72355893 None:intergenic 35.0%
GTCAATAAGTACTACACCAT+GGG + chr8.2:72356295-72356314 MS.gene08468:CDS 35.0%
TATAGTACCAATGTTGCAGA+TGG + chr8.2:72356083-72356102 MS.gene08468:CDS 35.0%
TCTGCAACATTGGTACTATA+AGG - chr8.2:72356083-72356102 None:intergenic 35.0%
TGAAAGATATTGTTCCTGAG+TGG + chr8.2:72356441-72356460 MS.gene08468:CDS 35.0%
TGCAACATTGGTACTATAAG+GGG - chr8.2:72356081-72356100 None:intergenic 35.0%
TTCTGCTCCTATTCATATCT+GGG + chr8.2:72355998-72356017 MS.gene08468:CDS 35.0%
TTGCTATCCCAGATATGAAT+AGG - chr8.2:72356008-72356027 None:intergenic 35.0%
!!! AGTGTAGTTTTGTCTTATCC+AGG + chr8.2:72356380-72356399 MS.gene08468:CDS 35.0%
AAGGCAGTCAAGAACTCTAT+TGG + chr8.2:72355963-72355982 MS.gene08468:CDS 40.0%
AAGTTGTAACTTCCCTGTTG+AGG - chr8.2:72355940-72355959 None:intergenic 40.0%
AATAGAGTTCTTGACTGCCT+TGG - chr8.2:72355964-72355983 None:intergenic 40.0%
AATGCCATAACTACCTCAAC+AGG + chr8.2:72355924-72355943 MS.gene08468:CDS 40.0%
AGGGAAGTTACAACTTACCA+AGG + chr8.2:72355944-72355963 MS.gene08468:CDS 40.0%
ATATTGTTCCTGAGTGGGTA+AGG + chr8.2:72356447-72356466 MS.gene08468:CDS 40.0%
ATGCCATAACTACCTCAACA+GGG + chr8.2:72355925-72355944 MS.gene08468:CDS 40.0%
GAGAGGCTAATGTTGTGATA+AGG + chr8.2:72356333-72356352 MS.gene08468:CDS 40.0%
GATACTCAGCCACAAAACAT+CGG + chr8.2:72356131-72356150 MS.gene08468:CDS 40.0%
GATGAAGACTGTTAAGGAGA+TGG - chr8.2:72355814-72355833 None:intergenic 40.0%
GTCTTGGCTAAACTTTGTGA+TGG - chr8.2:72355880-72355899 None:intergenic 40.0%
TACCAATGTTGCAGATGGTT+TGG + chr8.2:72356088-72356107 MS.gene08468:CDS 40.0%
! AAGTACTACACCATGGGTTT+TGG + chr8.2:72356301-72356320 MS.gene08468:CDS 40.0%
! CATATCTGGGATAGCAAAAC+AGG + chr8.2:72356011-72356030 MS.gene08468:CDS 40.0%
! CTTCCATTTTCCAAAACCCA+TGG - chr8.2:72356314-72356333 None:intergenic 40.0%
! TCAAAGGCACAACATCACTA+AGG - chr8.2:72356424-72356443 None:intergenic 40.0%
!!! ACACCATGGGTTTTGGAAAA+TGG + chr8.2:72356308-72356327 MS.gene08468:CDS 40.0%
!!! GGTTTTGGAAAATGGAAGAG+AGG + chr8.2:72356316-72356335 MS.gene08468:CDS 40.0%
AGGTAGTTATGGCATTGCCT+TGG - chr8.2:72355920-72355939 None:intergenic 45.0%
ATAAGGGGCAGTTATGGCAA+AGG - chr8.2:72356066-72356085 None:intergenic 45.0%
CTTCCCTGTTGAGGTAGTTA+TGG - chr8.2:72355931-72355950 None:intergenic 45.0%
GGTACTATAAGGGGCAGTTA+TGG - chr8.2:72356072-72356091 None:intergenic 45.0%
! TTTGGCCTTCTTCATTGCAC+CGG + chr8.2:72356106-72356125 MS.gene08468:CDS 45.0%
!!! TTTTGTGGCTGAGTATCGAC+CGG - chr8.2:72356128-72356147 None:intergenic 45.0%
AAACCGATCCTTACCCACTC+AGG - chr8.2:72356458-72356477 None:intergenic 50.0%
ATCGACCGGTGCAATGAAGA+AGG - chr8.2:72356114-72356133 None:intergenic 50.0%
ATCGGTCGTGCAGGATTTCT+CGG + chr8.2:72356149-72356168 MS.gene08468:CDS 50.0%
GGATAGCAAAACAGGAGACG+TGG + chr8.2:72356019-72356038 MS.gene08468:CDS 50.0%
GGCCAAACCATCTGCAACAT+TGG - chr8.2:72356093-72356112 None:intergenic 50.0%
GTTCCTGAGTGGGTAAGGAT+CGG + chr8.2:72356452-72356471 MS.gene08468:CDS 50.0%
TTCTGCGAATTCTGCACCAG+TGG - chr8.2:72356489-72356508 None:intergenic 50.0%
CCACAAAACATCGGTCGTGC+AGG + chr8.2:72356140-72356159 MS.gene08468:CDS 55.0%
! ATCGGTTTCTCAGCAGCCAC+TGG + chr8.2:72356470-72356489 MS.gene08468:CDS 55.0%
! CCTGCACGACCGATGTTTTG+TGG - chr8.2:72356143-72356162 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 72355780 72356601 72355780 ID=MS.gene08468
chr8.2 mRNA 72355780 72356601 72355780 ID=MS.gene08468.t1;Parent=MS.gene08468
chr8.2 exon 72355780 72356601 72355780 ID=MS.gene08468.t1.exon1;Parent=MS.gene08468.t1
chr8.2 CDS 72355780 72356601 72355780 ID=cds.MS.gene08468.t1;Parent=MS.gene08468.t1
Gene Sequence

>MS.gene08468

ATGTCTTCTTGCAACTTCTATGTTACTCTATCCATCTCCTTAACAGTCTTCATCTTGTTATTCAATAAGGTGAACTCAACAGAACTCACTTCCTTTACCATCACAAAGTTTAGCCAAGACCAAAAGAATCTAATCTTCCAAGGCAATGCCATAACTACCTCAACAGGGAAGTTACAACTTACCAAGGCAGTCAAGAACTCTATTGGCAGAGCTCTATATTCTGCTCCTATTCATATCTGGGATAGCAAAACAGGAGACGTGGCTAACTTCGAAACACTATTCACCTTTGCCATAACTGCCCCTTATAGTACCAATGTTGCAGATGGTTTGGCCTTCTTCATTGCACCGGTCGATACTCAGCCACAAAACATCGGTCGTGCAGGATTTCTCGGAGTTTTCAACAGCGAAAATTACAACAAATCAATTCAAACAGTTGCAGTTGAAATAGACACTTTTCATAATACTTGGGATCCAAAGATAAATAGACATATTGGTATCAATGTAAACTCTATTAAGTCAATAAGTACTACACCATGGGTTTTGGAAAATGGAAGAGAGGCTAATGTTGTGATAAGGTTTGATAGTCACACTAATGTGTTAAGTGTAGTTTTGTCTTATCCAGGACTTCCTGATAGTTATATCCTTAGTGATGTTGTGCCTTTGAAAGATATTGTTCCTGAGTGGGTAAGGATCGGTTTCTCAGCAGCCACTGGTGCAGAATTCGCAGAACATGATATTCGTTATTGGTCTTTTCATTCTGAGTTGAGCCTAGTTTTTAATAACAACAATGCTAATGTTTCAAGCTCTGTGCAGACTGCGTAG
Protein sequence

>MS.gene08468.t1

MSSCNFYVTLSISLTVFILLFNKVNSTELTSFTITKFSQDQKNLIFQGNAITTSTGKLQLTKAVKNSIGRALYSAPIHIWDSKTGDVANFETLFTFAITAPYSTNVADGLAFFIAPVDTQPQNIGRAGFLGVFNSENYNKSIQTVAVEIDTFHNTWDPKINRHIGINVNSIKSISTTPWVLENGREANVVIRFDSHTNVLSVVLSYPGLPDSYILSDVVPLKDIVPEWVRIGFSAATGAEFAEHDIRYWSFHSELSLVFNNNNANVSSSVQTA