AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051005

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051005.t1 MTR_8g023510 95.620 274 10 1 3 274 4 277 0.0 530
MS.gene051005.t1 MTR_3g463370 59.643 280 65 5 3 274 2 241 5.44e-100 292
MS.gene051005.t1 MTR_4g023810 60.236 254 85 6 23 274 25 264 1.40e-99 292
MS.gene051005.t1 MTR_8g068040 37.891 256 144 7 11 256 11 261 2.29e-48 161
MS.gene051005.t1 MTR_5g031100 39.583 240 129 5 32 256 40 278 6.40e-48 160
MS.gene051005.t1 MTR_8g068030 36.538 260 146 7 11 256 11 265 1.45e-46 157
MS.gene051005.t1 MTR_5g031160 38.800 250 133 8 24 256 41 287 3.57e-45 154
MS.gene051005.t1 MTR_3g054170 41.985 262 140 9 1 257 1 255 6.49e-45 152
MS.gene051005.t1 MTR_5g031120 38.589 241 131 6 32 256 40 279 3.54e-44 151
MS.gene051005.t1 MTR_5g031140 38.333 240 132 7 32 256 48 286 4.35e-43 148
MS.gene051005.t1 MTR_3g054180 41.961 255 133 8 11 257 14 261 2.45e-42 145
MS.gene051005.t1 MTR_8g068050 39.163 263 139 10 8 256 18 273 6.27e-42 152
MS.gene051005.t1 MTR_3g047140 38.550 262 149 8 8 263 13 268 1.18e-40 142
MS.gene051005.t1 MTR_5g031030 38.306 248 136 9 23 256 30 274 5.73e-40 140
MS.gene051005.t1 MTR_5g031090 37.603 242 133 8 32 256 35 275 1.44e-39 139
MS.gene051005.t1 MTR_3g027280 39.526 253 132 10 13 252 18 262 5.67e-38 135
MS.gene051005.t1 MTR_8g067980 40.756 238 120 12 32 254 26 257 1.46e-37 133
MS.gene051005.t1 MTR_1g090973 36.531 271 156 11 7 269 11 273 5.05e-36 130
MS.gene051005.t1 MTR_4g093080 33.824 272 167 9 8 271 8 274 5.89e-35 133
MS.gene051005.t1 MTR_4g093140 34.182 275 155 10 1 258 1 266 6.46e-35 133
MS.gene051005.t1 MTR_0163s0020 37.313 268 153 9 11 269 16 277 9.66e-35 126
MS.gene051005.t1 MTR_0684s0020 37.313 268 153 9 11 269 15 276 1.01e-34 126
MS.gene051005.t1 MTR_4g093110 32.727 275 159 9 1 258 1 266 5.16e-34 130
MS.gene051005.t1 MTR_1g090957 36.508 252 129 10 13 252 18 250 3.67e-33 122
MS.gene051005.t1 MTR_1g090943 37.743 257 146 11 7 256 11 260 3.83e-33 122
MS.gene051005.t1 MTR_8g067940 34.201 269 153 9 9 256 16 281 5.01e-33 122
MS.gene051005.t1 MTR_3g054200 37.302 252 147 8 11 257 10 255 6.99e-33 121
MS.gene051005.t1 MTR_8g067990 36.842 247 132 13 32 261 26 265 1.04e-31 118
MS.gene051005.t1 MTR_4g093070 32.384 281 154 9 1 258 1 268 1.12e-31 123
MS.gene051005.t1 MTR_8g067690 33.906 233 144 5 33 256 63 294 8.91e-30 118
MS.gene051005.t1 MTR_8g067630 39.720 214 118 8 33 237 33 244 2.00e-29 117
MS.gene051005.t1 MTR_8g067720 30.882 272 173 6 1 264 1 265 2.44e-29 117
MS.gene051005.t1 MTR_8g067930 32.714 269 168 6 7 266 5 269 3.52e-29 116
MS.gene051005.t1 MTR_1g090930 36.694 248 131 10 18 251 23 258 1.40e-27 108
MS.gene051005.t1 MTR_1g014240 33.054 239 144 8 33 257 40 276 6.18e-27 110
MS.gene051005.t1 MTR_8g067735 32.677 254 159 8 15 257 27 279 1.70e-26 108
MS.gene051005.t1 MTR_7g115740 32.422 256 150 10 19 258 14 262 5.13e-26 107
MS.gene051005.t1 MTR_8g067960 33.482 224 131 9 45 256 24 241 1.14e-24 99.4
MS.gene051005.t1 MTR_1g090937 32.937 252 146 10 16 256 21 260 6.00e-24 97.8
MS.gene051005.t1 MTR_4g093040 35.638 188 110 6 68 245 73 259 6.14e-24 101
MS.gene051005.t1 MTR_7g116130 34.498 229 128 9 44 256 39 261 1.01e-23 100
MS.gene051005.t1 MTR_4g093040 35.955 178 103 6 78 245 1 177 1.24e-22 97.4
MS.gene051005.t1 MTR_1g090960 33.460 263 121 12 7 257 11 231 2.18e-22 93.2
MS.gene051005.t1 MTR_1g048360 33.333 210 120 8 56 254 60 260 2.64e-21 93.6
MS.gene051005.t1 MTR_7g062940 31.621 253 153 8 17 252 6 255 5.67e-21 92.8
MS.gene051005.t1 MTR_7g062950 31.349 252 153 7 18 252 7 255 4.14e-19 87.4
MS.gene051005.t1 MTR_7g063030 32.889 225 133 6 44 252 32 254 5.16e-19 87.0
MS.gene051005.t1 MTR_7g063030 31.343 268 160 8 1 252 1 260 6.31e-19 86.7
MS.gene051005.t1 MTR_4g093050 32.308 260 144 12 16 252 12 262 6.33e-19 86.7
MS.gene051005.t1 MTR_7g062770 31.250 256 155 6 17 252 6 260 3.52e-18 84.3
MS.gene051005.t1 MTR_5g035910 30.827 266 156 10 10 252 3 263 1.73e-17 82.4
MS.gene051005.t1 MTR_1g052275 30.888 259 155 7 15 252 3 258 2.34e-17 82.0
MS.gene051005.t1 MTR_7g062890 31.102 254 154 8 17 252 6 256 3.40e-17 81.6
MS.gene051005.t1 MTR_7g062700 31.518 257 151 8 17 252 6 258 1.08e-16 80.1
MS.gene051005.t1 MTR_4g056320 28.736 261 125 10 11 257 17 230 1.13e-16 77.8
MS.gene051005.t1 MTR_5g025020 30.233 215 124 7 67 263 85 291 1.38e-16 79.7
MS.gene051005.t1 MTR_5g077100 31.771 192 115 5 70 254 68 250 3.46e-16 78.6
MS.gene051005.t1 MTR_7g063010 28.235 255 165 6 14 252 4 256 2.31e-15 76.3
MS.gene051005.t1 MTR_7g062750 28.906 256 159 7 17 252 6 258 3.13e-15 75.9
MS.gene051005.t1 MTR_5g068770 29.457 258 148 12 23 254 28 277 4.20e-15 75.5
MS.gene051005.t1 MTR_3g068025 30.769 260 157 8 15 252 9 267 2.56e-14 73.2
MS.gene051005.t1 MTR_2g013720 29.927 274 158 11 1 252 1 262 1.15e-13 71.2
MS.gene051005.t1 MTR_8g068050 35.075 134 76 5 8 135 18 146 3.42e-13 69.7
MS.gene051005.t1 MTR_7g062920 29.688 256 157 7 17 252 6 258 3.49e-13 69.7
MS.gene051005.t1 MTR_7g062660 31.225 253 154 7 17 252 6 255 1.48e-12 67.8
MS.gene051005.t1 MTR_7g062900 26.939 245 158 5 23 252 13 251 2.78e-12 67.0
MS.gene051005.t1 MTR_7g062680 29.694 229 140 5 44 252 32 259 9.64e-12 65.5
MS.gene051005.t1 MTR_7g062990 27.059 255 168 5 15 252 6 259 1.64e-11 64.7
MS.gene051005.t1 MTR_1g099260 26.016 246 151 9 30 254 14 249 1.77e-11 64.7
MS.gene051005.t1 MTR_5g095970 29.688 256 158 7 9 254 4 247 2.80e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051005.t1 AT5G65600 33.778 225 137 7 33 245 38 262 8.72e-25 103
MS.gene051005.t1 AT5G10530 33.462 260 155 10 12 259 4 257 1.19e-24 103
MS.gene051005.t1 AT4G02410 32.231 242 147 6 27 252 23 263 4.27e-23 99.0
MS.gene051005.t1 AT2G37710 30.667 225 139 6 44 252 38 261 7.18e-22 95.5
MS.gene051005.t1 AT4G02420 30.943 265 158 9 7 252 2 260 1.14e-21 94.7
MS.gene051005.t1 AT2G29250 31.022 274 153 10 6 255 3 264 1.99e-21 94.0
MS.gene051005.t1 AT5G01540 31.200 250 144 9 31 254 31 278 8.11e-21 92.4
MS.gene051005.t1 AT3G55550 30.705 241 152 4 27 253 20 259 1.99e-20 91.3
MS.gene051005.t1 AT4G29050 33.186 226 123 8 49 252 39 258 4.88e-20 90.1
MS.gene051005.t1 AT4G29050 33.186 226 123 8 49 252 53 272 5.67e-20 89.7
MS.gene051005.t1 AT3G53810 30.488 246 152 7 25 253 19 262 3.38e-19 87.4
MS.gene051005.t1 AT5G01550 29.181 281 166 10 3 254 14 290 1.98e-18 85.5
MS.gene051005.t1 AT5G01560 29.482 251 142 10 33 254 30 274 1.38e-17 82.8
MS.gene051005.t1 AT3G08870 28.522 291 168 12 2 254 13 301 3.20e-17 81.6
MS.gene051005.t1 AT3G15356 28.689 244 142 8 41 253 28 270 5.46e-17 79.0
MS.gene051005.t1 AT3G08870 29.963 267 155 11 18 254 16 280 8.95e-17 80.5
MS.gene051005.t1 AT5G03140 30.392 204 128 6 57 250 58 257 1.42e-16 79.7
MS.gene051005.t1 AT5G55830 29.811 265 149 12 11 254 18 266 3.79e-16 78.6
MS.gene051005.t1 AT2G29220 29.927 274 147 12 12 255 6 264 5.23e-16 78.2
MS.gene051005.t1 AT5G60280 28.405 257 159 9 13 252 8 256 7.54e-16 77.8
MS.gene051005.t1 AT5G60310 29.317 249 147 9 24 252 18 257 1.27e-15 77.0
MS.gene051005.t1 AT3G45430 31.679 262 137 13 27 261 22 268 2.27e-15 76.3
MS.gene051005.t1 AT3G45430 31.679 262 137 13 27 261 22 268 2.27e-15 76.3
MS.gene051005.t1 AT3G45430 31.679 262 137 13 27 261 22 268 2.27e-15 76.3
MS.gene051005.t1 AT3G16530 27.049 244 146 8 41 253 28 270 1.39e-14 72.4
MS.gene051005.t1 AT5G06740 31.000 200 121 9 65 254 78 270 5.27e-14 72.0
MS.gene051005.t1 AT5G06740 31.000 200 121 9 65 254 66 258 5.28e-14 72.0
MS.gene051005.t1 AT4G04960 31.780 236 138 9 33 250 23 253 5.65e-14 72.0
MS.gene051005.t1 AT4G04960 31.780 236 138 9 33 250 23 253 9.66e-14 71.2
MS.gene051005.t1 AT5G60300 29.918 244 139 12 31 252 25 258 1.03e-13 71.2
MS.gene051005.t1 AT5G60300 29.918 244 139 12 31 252 25 258 1.03e-13 71.2
MS.gene051005.t1 AT5G60300 29.918 244 139 12 31 252 25 258 1.28e-13 71.2
MS.gene051005.t1 AT1G70110 27.706 231 138 10 44 252 33 256 4.22e-13 69.3
MS.gene051005.t1 AT3G59700 25.641 234 155 7 35 250 17 249 1.44e-12 67.8
MS.gene051005.t1 AT3G45330 28.112 249 161 7 27 259 24 270 2.45e-12 67.4
MS.gene051005.t1 AT2G43700 29.796 245 145 8 30 254 14 251 2.53e-12 67.0
MS.gene051005.t1 AT5G42120 29.707 239 140 8 37 254 27 258 4.41e-12 66.6
MS.gene051005.t1 AT3G53380 32.000 250 150 10 11 250 5 244 1.92e-11 64.7
MS.gene051005.t1 AT5G60320 27.799 259 159 12 17 252 9 262 2.02e-11 64.3

Find 51 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAAGATTAGATTCTTT+TGG 0.238719 8.3:-68608658 None:intergenic
CAGAACATGATATTCGTTAT+TGG 0.241480 8.3:+68609263 MS.gene051005:CDS
ATTCTGCTCCTATTCATATC+TGG 0.244024 8.3:+68608756 MS.gene051005:CDS
CCAATATGTCTATTTATCTT+TGG 0.248398 8.3:-68609010 None:intergenic
CTTCATCTTGTTATTCAATA+AGG 0.258451 8.3:+68608586 MS.gene051005:CDS
AAGCACTACACCATGGGTTT+TGG 0.288100 8.3:+68609060 MS.gene051005:CDS
CTTCCCTGTTGAGGTAGTTA+TGG 0.356339 8.3:-68608687 None:intergenic
ATCGGTCGTGCAGGATTTCT+CGG 0.366627 8.3:+68608908 MS.gene051005:CDS
TTGCTATCCCAGATATGAAT+AGG 0.375848 8.3:-68608764 None:intergenic
CATATCTGGGATAGCAAAAC+AGG 0.382485 8.3:+68608770 MS.gene051005:CDS
CCAAAGATAAATAGACATAT+TGG 0.396965 8.3:+68609010 MS.gene051005:CDS
TACCAATGTTGCAGATGGTT+TGG 0.397603 8.3:+68608847 MS.gene051005:CDS
TCACTAAGTATATAACTATC+AGG 0.404845 8.3:-68609166 None:intergenic
TCTGCAACATTGGTACTATA+AGG 0.412329 8.3:-68608839 None:intergenic
GGTACTATAAGGAGCGGTTA+TGG 0.427914 8.3:-68608828 None:intergenic
TAACAAGATGAAGACTGTTA+AGG 0.442595 8.3:-68608576 None:intergenic
AAGGCAGTCAAGAACTCTAT+TGG 0.450440 8.3:+68608722 MS.gene051005:CDS
TAGTGATGTTGTGCCTTTGA+AGG 0.455186 8.3:+68609183 MS.gene051005:CDS
AATGCCATAACTACCTCAAC+AGG 0.458397 8.3:+68608683 MS.gene051005:CDS
TTCTGCTCCTATTCATATCT+GGG 0.459119 8.3:+68608757 MS.gene051005:CDS
GAGAGGCTAATGTTGTGATA+AGG 0.465611 8.3:+68609092 MS.gene051005:CDS
GCTAAACTTTGTGATGGTAA+AGG 0.469149 8.3:-68608630 None:intergenic
GGCCAAACCATCTGCAACAT+TGG 0.479659 8.3:-68608849 None:intergenic
CCACAAAACATCGGTCGTGC+AGG 0.494269 8.3:+68608899 MS.gene051005:CDS
AATAGAGTTCTTGACTGCCT+TGG 0.497569 8.3:-68608720 None:intergenic
ATATTGTTCCTGAGTGGGTA+AGG 0.500247 8.3:+68609206 MS.gene051005:CDS
TAATGTTTCAAGCTCTGTGC+AGG 0.524413 8.3:+68609330 MS.gene051005:CDS
GTCAATAAGCACTACACCAT+GGG 0.524982 8.3:+68609054 MS.gene051005:CDS
GAAGGATATTGTTCCTGAGT+GGG 0.526965 8.3:+68609201 MS.gene051005:CDS
ATATAACTATCAGGAAGTCC+TGG 0.527887 8.3:-68609157 None:intergenic
ATCGGTTTCTCAGCAGCCAC+TGG 0.531685 8.3:+68609229 MS.gene051005:CDS
TATAGTACCAATGTTGCAGA+TGG 0.532177 8.3:+68608842 MS.gene051005:CDS
TTTGGCCTTCTTCATTGCAC+CGG 0.538662 8.3:+68608865 MS.gene051005:CDS
GATGAAGACTGTTAAGGAGA+TGG 0.541381 8.3:-68608570 None:intergenic
ATCGACCGGTGCAATGAAGA+AGG 0.544745 8.3:-68608870 None:intergenic
GTTCCTGAGTGGGTAAGGAT+CGG 0.550149 8.3:+68609211 MS.gene051005:CDS
AGGTAGTTATGGCATTGCCT+TGG 0.557576 8.3:-68608676 None:intergenic
TTCTGCAAATTCTGCACCAG+TGG 0.566800 8.3:-68609245 None:intergenic
AAGTTGTAACTTCCCTGTTG+AGG 0.568898 8.3:-68608696 None:intergenic
ATAAGGAGCGGTTATGGCAA+AGG 0.569731 8.3:-68608822 None:intergenic
CAAAAGAATCTAATCTTCCA+AGG 0.573374 8.3:+68608659 MS.gene051005:CDS
AAACCGATCCTTACCCACTC+AGG 0.577788 8.3:-68609214 None:intergenic
GTCTTGGCTAAACTTTGTGA+TGG 0.583455 8.3:-68608636 None:intergenic
TCAGGAACAATATCCTTCAA+AGG 0.596202 8.3:-68609196 None:intergenic
TGAAGGATATTGTTCCTGAG+TGG 0.597859 8.3:+68609200 MS.gene051005:CDS
GATACTCAGCCACAAAACAT+CGG 0.646194 8.3:+68608890 MS.gene051005:CDS
AGTCAATAAGCACTACACCA+TGG 0.646654 8.3:+68609053 MS.gene051005:CDS
AACATTGGTACTATAAGGAG+CGG 0.664620 8.3:-68608834 None:intergenic
AGGGAAGTTACAACTTACCA+AGG 0.684795 8.3:+68608703 MS.gene051005:CDS
GGATAGCAAAACAGGAGACG+TGG 0.685503 8.3:+68608778 MS.gene051005:CDS
ATGCCATAACTACCTCAACA+GGG 0.753652 8.3:+68608684 MS.gene051005:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGTTGTTATTAAAAACT+AGG - chr8.3:68609309-68609328 None:intergenic 20.0%
! CCAAAGATAAATAGACATAT+TGG + chr8.3:68609010-68609029 MS.gene051005:CDS 25.0%
! CCAATATGTCTATTTATCTT+TGG - chr8.3:68609013-68609032 None:intergenic 25.0%
! TCACTAAGTATATAACTATC+AGG - chr8.3:68609169-68609188 None:intergenic 25.0%
!! AGACACTTTTCATAATACTT+GGG + chr8.3:68608985-68609004 MS.gene051005:CDS 25.0%
!! TAGACACTTTTCATAATACT+TGG + chr8.3:68608984-68609003 MS.gene051005:CDS 25.0%
!!! CTTCATCTTGTTATTCAATA+AGG + chr8.3:68608586-68608605 MS.gene051005:CDS 25.0%
CAAAAGAATCTAATCTTCCA+AGG + chr8.3:68608659-68608678 MS.gene051005:CDS 30.0%
CAGAACATGATATTCGTTAT+TGG + chr8.3:68609263-68609282 MS.gene051005:CDS 30.0%
TAACAAGATGAAGACTGTTA+AGG - chr8.3:68608579-68608598 None:intergenic 30.0%
! AGATTAGATTCTTTTGGTCT+TGG - chr8.3:68608655-68608674 None:intergenic 30.0%
! CTTGGAAGATTAGATTCTTT+TGG - chr8.3:68608661-68608680 None:intergenic 30.0%
AACATTGGTACTATAAGGAG+CGG - chr8.3:68608837-68608856 None:intergenic 35.0%
ATATAACTATCAGGAAGTCC+TGG - chr8.3:68609160-68609179 None:intergenic 35.0%
ATTCTGCTCCTATTCATATC+TGG + chr8.3:68608756-68608775 MS.gene051005:CDS 35.0%
GCTAAACTTTGTGATGGTAA+AGG - chr8.3:68608633-68608652 None:intergenic 35.0%
TATAGTACCAATGTTGCAGA+TGG + chr8.3:68608842-68608861 MS.gene051005:CDS 35.0%
TCAGGAACAATATCCTTCAA+AGG - chr8.3:68609199-68609218 None:intergenic 35.0%
TCTGCAACATTGGTACTATA+AGG - chr8.3:68608842-68608861 None:intergenic 35.0%
TTCTGCTCCTATTCATATCT+GGG + chr8.3:68608757-68608776 MS.gene051005:CDS 35.0%
TTGCTATCCCAGATATGAAT+AGG - chr8.3:68608767-68608786 None:intergenic 35.0%
!!! AGTGTAGTTTTGTCTTATCC+AGG + chr8.3:68609139-68609158 MS.gene051005:CDS 35.0%
AAGGCAGTCAAGAACTCTAT+TGG + chr8.3:68608722-68608741 MS.gene051005:CDS 40.0%
AAGTTGTAACTTCCCTGTTG+AGG - chr8.3:68608699-68608718 None:intergenic 40.0%
AATAGAGTTCTTGACTGCCT+TGG - chr8.3:68608723-68608742 None:intergenic 40.0%
AATGCCATAACTACCTCAAC+AGG + chr8.3:68608683-68608702 MS.gene051005:CDS 40.0%
AGGGAAGTTACAACTTACCA+AGG + chr8.3:68608703-68608722 MS.gene051005:CDS 40.0%
AGTCAATAAGCACTACACCA+TGG + chr8.3:68609053-68609072 MS.gene051005:CDS 40.0%
ATATTGTTCCTGAGTGGGTA+AGG + chr8.3:68609206-68609225 MS.gene051005:CDS 40.0%
ATGCCATAACTACCTCAACA+GGG + chr8.3:68608684-68608703 MS.gene051005:CDS 40.0%
GAAGGATATTGTTCCTGAGT+GGG + chr8.3:68609201-68609220 MS.gene051005:CDS 40.0%
GAGAGGCTAATGTTGTGATA+AGG + chr8.3:68609092-68609111 MS.gene051005:CDS 40.0%
GATACTCAGCCACAAAACAT+CGG + chr8.3:68608890-68608909 MS.gene051005:CDS 40.0%
GATGAAGACTGTTAAGGAGA+TGG - chr8.3:68608573-68608592 None:intergenic 40.0%
GTCAATAAGCACTACACCAT+GGG + chr8.3:68609054-68609073 MS.gene051005:CDS 40.0%
GTCTTGGCTAAACTTTGTGA+TGG - chr8.3:68608639-68608658 None:intergenic 40.0%
TAATGTTTCAAGCTCTGTGC+AGG + chr8.3:68609330-68609349 MS.gene051005:CDS 40.0%
TACCAATGTTGCAGATGGTT+TGG + chr8.3:68608847-68608866 MS.gene051005:CDS 40.0%
TAGTGATGTTGTGCCTTTGA+AGG + chr8.3:68609183-68609202 MS.gene051005:CDS 40.0%
TGAAGGATATTGTTCCTGAG+TGG + chr8.3:68609200-68609219 MS.gene051005:CDS 40.0%
! CATATCTGGGATAGCAAAAC+AGG + chr8.3:68608770-68608789 MS.gene051005:CDS 40.0%
! CTTCCATTTTCCAAAACCCA+TGG - chr8.3:68609073-68609092 None:intergenic 40.0%
!!! ACACCATGGGTTTTGGAAAA+TGG + chr8.3:68609067-68609086 MS.gene051005:CDS 40.0%
!!! GGTTTTGGAAAATGGAAGAG+AGG + chr8.3:68609075-68609094 MS.gene051005:CDS 40.0%
AGGTAGTTATGGCATTGCCT+TGG - chr8.3:68608679-68608698 None:intergenic 45.0%
ATAAGGAGCGGTTATGGCAA+AGG - chr8.3:68608825-68608844 None:intergenic 45.0%
CTTCCCTGTTGAGGTAGTTA+TGG - chr8.3:68608690-68608709 None:intergenic 45.0%
GGTACTATAAGGAGCGGTTA+TGG - chr8.3:68608831-68608850 None:intergenic 45.0%
TTCTGCAAATTCTGCACCAG+TGG - chr8.3:68609248-68609267 None:intergenic 45.0%
! AAGCACTACACCATGGGTTT+TGG + chr8.3:68609060-68609079 MS.gene051005:CDS 45.0%
! TTTGGCCTTCTTCATTGCAC+CGG + chr8.3:68608865-68608884 MS.gene051005:CDS 45.0%
!!! TTTTGTGGCTGAGTATCGAC+CGG - chr8.3:68608887-68608906 None:intergenic 45.0%
AAACCGATCCTTACCCACTC+AGG - chr8.3:68609217-68609236 None:intergenic 50.0%
ATCGACCGGTGCAATGAAGA+AGG - chr8.3:68608873-68608892 None:intergenic 50.0%
ATCGGTCGTGCAGGATTTCT+CGG + chr8.3:68608908-68608927 MS.gene051005:CDS 50.0%
GGATAGCAAAACAGGAGACG+TGG + chr8.3:68608778-68608797 MS.gene051005:CDS 50.0%
GGCCAAACCATCTGCAACAT+TGG - chr8.3:68608852-68608871 None:intergenic 50.0%
GTTCCTGAGTGGGTAAGGAT+CGG + chr8.3:68609211-68609230 MS.gene051005:CDS 50.0%
CCACAAAACATCGGTCGTGC+AGG + chr8.3:68608899-68608918 MS.gene051005:CDS 55.0%
! ATCGGTTTCTCAGCAGCCAC+TGG + chr8.3:68609229-68609248 MS.gene051005:CDS 55.0%
! CCTGCACGACCGATGTTTTG+TGG - chr8.3:68608902-68608921 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 68608536 68609360 68608536 ID=MS.gene051005
chr8.3 mRNA 68608536 68609360 68608536 ID=MS.gene051005.t1;Parent=MS.gene051005
chr8.3 exon 68608536 68609360 68608536 ID=MS.gene051005.t1.exon1;Parent=MS.gene051005.t1
chr8.3 CDS 68608536 68609360 68608536 ID=cds.MS.gene051005.t1;Parent=MS.gene051005.t1
Gene Sequence

>MS.gene051005

ATGTCGTCTTCTTGCAACTTCTATGTTACTCTATCCATCTCCTTAACAGTCTTCATCTTGTTATTCAATAAGGTGAAGTCAACAGAACTCACTTCCTTTACCATCACAAAGTTTAGCCAAGACCAAAAGAATCTAATCTTCCAAGGCAATGCCATAACTACCTCAACAGGGAAGTTACAACTTACCAAGGCAGTCAAGAACTCTATTGGCAGAGCTCTATATTCTGCTCCTATTCATATCTGGGATAGCAAAACAGGAGACGTGGCTAACTTTGAAACACTCTTCACCTTTGCCATAACCGCTCCTTATAGTACCAATGTTGCAGATGGTTTGGCCTTCTTCATTGCACCGGTCGATACTCAGCCACAAAACATCGGTCGTGCAGGATTTCTCGGAGTTTTCAACAGCGAAAATTACAATAAATCAATACAAACAGTTGCAGTTGAAATAGACACTTTTCATAATACTTGGGATCCAAAGATAAATAGACATATTGGCATCAATGTAAACTGTATTAAGTCAATAAGCACTACACCATGGGTTTTGGAAAATGGAAGAGAGGCTAATGTTGTGATAAGGTTTGATAGTCACACTAATGTGTTAAGTGTAGTTTTGTCTTATCCAGGACTTCCTGATAGTTATATACTTAGTGATGTTGTGCCTTTGAAGGATATTGTTCCTGAGTGGGTAAGGATCGGTTTCTCAGCAGCCACTGGTGCAGAATTTGCAGAACATGATATTCGTTATTGGTCTTTTCATTCTGAGTTGAGCCTAGTTTTTAATAACAACAATGCTAATGTTTCAAGCTCTGTGCAGGCTGCATAG
Protein sequence

>MS.gene051005.t1

MSSSCNFYVTLSISLTVFILLFNKVKSTELTSFTITKFSQDQKNLIFQGNAITTSTGKLQLTKAVKNSIGRALYSAPIHIWDSKTGDVANFETLFTFAITAPYSTNVADGLAFFIAPVDTQPQNIGRAGFLGVFNSENYNKSIQTVAVEIDTFHNTWDPKINRHIGINVNCIKSISTTPWVLENGREANVVIRFDSHTNVLSVVLSYPGLPDSYILSDVVPLKDIVPEWVRIGFSAATGAEFAEHDIRYWSFHSELSLVFNNNNANVSSSVQAA