Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08500.t1 | RHN39620.1 | 99.1 | 212 | 2 | 0 | 1 | 212 | 6 | 217 | 6.30E-118 | 433.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08500.t1 | Q93V56 | 88.2 | 212 | 25 | 0 | 1 | 212 | 1 | 212 | 4.3e-107 | 388.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08500.t1 | A0A072TMB0 | 99.1 | 212 | 2 | 0 | 1 | 212 | 46 | 257 | 4.6e-118 | 433.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051632 | MS.gene08500 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene08500 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene08500 | 0.801293 | 9.64E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene08500 | 0.800141 | 1.66E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08500.t1 | MTR_8g024050 | 99.057 | 212 | 2 | 0 | 1 | 212 | 46 | 257 | 9.98e-160 | 441 |
| MS.gene08500.t1 | MTR_7g118340 | 91.943 | 211 | 16 | 1 | 3 | 212 | 9 | 219 | 8.99e-146 | 405 |
| MS.gene08500.t1 | MTR_1g068810 | 84.772 | 197 | 30 | 0 | 16 | 212 | 52 | 248 | 4.71e-128 | 361 |
| MS.gene08500.t1 | MTR_1g068810 | 84.772 | 197 | 30 | 0 | 16 | 212 | 56 | 252 | 5.41e-128 | 361 |
| MS.gene08500.t1 | MTR_1g068810 | 84.772 | 197 | 30 | 0 | 16 | 212 | 33 | 229 | 5.48e-128 | 360 |
| MS.gene08500.t1 | MTR_5g020840 | 78.199 | 211 | 46 | 0 | 2 | 212 | 3 | 213 | 1.15e-127 | 358 |
| MS.gene08500.t1 | MTR_1g068810 | 84.080 | 201 | 31 | 1 | 12 | 212 | 25 | 224 | 1.50e-127 | 359 |
| MS.gene08500.t1 | MTR_1g068810 | 84.772 | 197 | 30 | 0 | 16 | 212 | 20 | 216 | 1.98e-127 | 358 |
| MS.gene08500.t1 | MTR_8g024050 | 99.415 | 171 | 1 | 0 | 1 | 171 | 1 | 171 | 4.08e-127 | 357 |
| MS.gene08500.t1 | MTR_8g077180 | 80.788 | 203 | 38 | 1 | 11 | 212 | 24 | 226 | 1.32e-122 | 346 |
| MS.gene08500.t1 | MTR_1g068810 | 74.222 | 225 | 30 | 1 | 16 | 212 | 56 | 280 | 1.33e-121 | 346 |
| MS.gene08500.t1 | MTR_1g068810 | 74.222 | 225 | 30 | 1 | 16 | 212 | 20 | 244 | 4.42e-121 | 343 |
| MS.gene08500.t1 | MTR_1g096640 | 79.188 | 197 | 40 | 1 | 4 | 199 | 6 | 202 | 8.20e-117 | 332 |
| MS.gene08500.t1 | MTR_1g068810 | 75.472 | 212 | 24 | 1 | 16 | 199 | 20 | 231 | 1.22e-114 | 327 |
| MS.gene08500.t1 | MTR_2g010430 | 33.333 | 168 | 85 | 6 | 35 | 178 | 82 | 246 | 2.89e-16 | 75.9 |
| MS.gene08500.t1 | MTR_1g112450 | 63.462 | 52 | 17 | 1 | 131 | 180 | 63 | 114 | 8.59e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08500.t1 | AT1G01050 | 88.208 | 212 | 25 | 0 | 1 | 212 | 1 | 212 | 5.54e-141 | 392 |
| MS.gene08500.t1 | AT1G01050 | 88.208 | 212 | 25 | 0 | 1 | 212 | 1 | 212 | 5.54e-141 | 392 |
| MS.gene08500.t1 | AT2G46860 | 86.574 | 216 | 25 | 1 | 1 | 212 | 1 | 216 | 7.22e-139 | 387 |
| MS.gene08500.t1 | AT4G01480 | 88.442 | 199 | 23 | 0 | 14 | 212 | 18 | 216 | 1.11e-133 | 374 |
| MS.gene08500.t1 | AT4G01480 | 88.442 | 199 | 23 | 0 | 14 | 212 | 18 | 216 | 1.11e-133 | 374 |
| MS.gene08500.t1 | AT3G53620 | 84.264 | 197 | 31 | 0 | 16 | 212 | 20 | 216 | 3.92e-127 | 357 |
| MS.gene08500.t1 | AT2G18230 | 76.382 | 199 | 47 | 0 | 14 | 212 | 20 | 218 | 3.13e-115 | 327 |
| MS.gene08500.t1 | AT5G09650 | 32.124 | 193 | 107 | 6 | 8 | 178 | 66 | 256 | 3.34e-18 | 81.3 |
Find 49 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACACAATTGAAAATATT+TGG | 0.135707 | 8.2:-71911390 | None:intergenic |
| CCCTGGCATGATCTTGAAAT+TGG | 0.268575 | 8.2:+71911239 | MS.gene08500:CDS |
| TGGCAGGAGCCTGTTCTTCC+TGG | 0.300485 | 8.2:+71911947 | MS.gene08500:intron |
| AAAGAATCCTTTCATTCAAA+CGG | 0.381204 | 8.2:-71911184 | None:intergenic |
| CGCGGTATGCGCTGATGATC+CGG | 0.389151 | 8.2:+71912132 | MS.gene08500:CDS |
| GTTGTTTATCCTCATAACTA+TGG | 0.399405 | 8.2:+71911686 | MS.gene08500:CDS |
| AAGAATCCTTTCATTCAAAC+GGG | 0.402993 | 8.2:-71911183 | None:intergenic |
| CATTCAAACGGGGAGTTGGG+CGG | 0.410809 | 8.2:-71911172 | None:intergenic |
| TTTCATTCAAACGGGGAGTT+GGG | 0.421103 | 8.2:-71911175 | None:intergenic |
| ACTTCAACCTCATCGCCTAA+TGG | 0.427291 | 8.2:+71912183 | MS.gene08500:CDS |
| CTTTCATTCAAACGGGGAGT+TGG | 0.427571 | 8.2:-71911176 | None:intergenic |
| ATTCAAACGGGGAGTTGGGC+GGG | 0.431213 | 8.2:-71911171 | None:intergenic |
| AGAAATACCTGATCAATCAT+AGG | 0.434889 | 8.2:-71912004 | None:intergenic |
| AGGAAACAACCAGGAAGAAC+AGG | 0.458021 | 8.2:-71911956 | None:intergenic |
| ACCAATTTCAAGATCATGCC+AGG | 0.462018 | 8.2:-71911240 | None:intergenic |
| CAACTCCCCGTTTGAATGAA+AGG | 0.463193 | 8.2:+71911177 | MS.gene08500:CDS |
| CGATGTCTTGGTTCTCATGC+AGG | 0.463888 | 8.2:+71911748 | MS.gene08500:CDS |
| AGAAGCGTTTAATCTCCATT+AGG | 0.470540 | 8.2:-71912198 | None:intergenic |
| TTGAAAATATTTGGTGCTCC+AGG | 0.472152 | 8.2:-71911381 | None:intergenic |
| CAATGATCCACTCGATGTCT+TGG | 0.475275 | 8.2:+71911736 | MS.gene08500:CDS |
| ACTAATGCCTATGATTGATC+AGG | 0.483555 | 8.2:+71911997 | MS.gene08500:CDS |
| GATCAGTTGCTGCTCACCCC+TGG | 0.485675 | 8.2:+71911222 | MS.gene08500:CDS |
| CTTCCTATGTTCAGGTTGAT+CGG | 0.486559 | 8.2:+71911648 | MS.gene08500:intron |
| ATGGCATCAACAGCAGTAGA+TGG | 0.493770 | 8.2:-71912779 | None:intergenic |
| AGAGATCACTAAGGGAAGTA+AGG | 0.518040 | 8.2:+71911514 | MS.gene08500:CDS |
| TTGTCTTCACATAGAGTTCG+AGG | 0.526790 | 8.2:-71911716 | None:intergenic |
| GTCCGATGGCTCTTGCTCGC+AGG | 0.526935 | 8.2:-71911976 | None:intergenic |
| GGGATAAAACCATAGTTATG+AGG | 0.531057 | 8.2:-71911695 | None:intergenic |
| GGATTCTTTCATCTTTGTCA+AGG | 0.544567 | 8.2:+71911198 | MS.gene08500:CDS |
| TCAGTATAGTGCTTATACTC+CGG | 0.562072 | 8.2:-71912151 | None:intergenic |
| TTCCTGCGAGCAAGAGCCAT+CGG | 0.567710 | 8.2:+71911974 | MS.gene08500:CDS |
| GCAGGTTGTAGAGATCACTA+AGG | 0.587594 | 8.2:+71911505 | MS.gene08500:intron |
| TGTATACTTACATCGAGTGT+TGG | 0.589482 | 8.2:-71912802 | None:intergenic |
| TACTTACATCGAGTGTTGGA+TGG | 0.594606 | 8.2:-71912798 | None:intergenic |
| AGACAAGAAGAATGAGAACA+AGG | 0.595962 | 8.2:+71912730 | MS.gene08500:intron |
| AATCATAGGCATTAGTCCGA+TGG | 0.605554 | 8.2:-71911990 | None:intergenic |
| TATTCTTGTCTATCTCCTCA+AGG | 0.605905 | 8.2:-71913049 | None:intergenic |
| CTTGCTCGCAGGAAACAACC+AGG | 0.608952 | 8.2:-71911965 | None:intergenic |
| TGTCTTCACATAGAGTTCGA+GGG | 0.623793 | 8.2:-71911715 | None:intergenic |
| CCAATTTCAAGATCATGCCA+GGG | 0.626448 | 8.2:-71911239 | None:intergenic |
| TTAATCTCCATTAGGCGATG+AGG | 0.630602 | 8.2:-71912190 | None:intergenic |
| CAGGTTGTAGAGATCACTAA+GGG | 0.630832 | 8.2:+71911506 | MS.gene08500:intron |
| AGTATATTCTGCATACCTTG+AGG | 0.641114 | 8.2:+71913034 | MS.gene08500:CDS |
| ATGAGAACCAAGACATCGAG+TGG | 0.661639 | 8.2:-71911743 | None:intergenic |
| GCATCAACAGCAGTAGATGG+TGG | 0.675653 | 8.2:-71912776 | None:intergenic |
| CAATTTCAAGATCATGCCAG+GGG | 0.707525 | 8.2:-71911238 | None:intergenic |
| AGAATCCTTTCATTCAAACG+GGG | 0.708146 | 8.2:-71911182 | None:intergenic |
| CAAGAAGAATGAGAACAAGG+AGG | 0.714358 | 8.2:+71912733 | MS.gene08500:CDS |
| GAAGGATGATAAAATCATCG+CGG | 0.762714 | 8.2:+71912114 | MS.gene08500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATGGTATATAATATTTT+TGG | - | chr8.2:71912909-71912928 | None:intergenic | 10.0% |
| !! | AATTTCAAAATGAAAACAAA+AGG | - | chr8.2:71911585-71911604 | None:intergenic | 15.0% |
| !!! | TTTCATTTTGAAATTTGAAA+TGG | + | chr8.2:71911590-71911609 | MS.gene08500:intron | 15.0% |
| !! | AACATTCTGAATTACTTATA+TGG | + | chr8.2:71911927-71911946 | MS.gene08500:intron | 20.0% |
| !! | AATGGACAAAAATATTAACT+TGG | + | chr8.2:71911608-71911627 | MS.gene08500:intron | 20.0% |
| !! | AGAGACAAAATATCATATTA+AGG | - | chr8.2:71912988-71913007 | None:intergenic | 20.0% |
| !! | CTTACACAATTGAAAATATT+TGG | - | chr8.2:71911393-71911412 | None:intergenic | 20.0% |
| !! | TGTTATGATTAAAGTTTCTT+AGG | - | chr8.2:71911802-71911821 | None:intergenic | 20.0% |
| !! | TTGTTAACATGAGATAATAA+AGG | - | chr8.2:71912237-71912256 | None:intergenic | 20.0% |
| !! | TTTAATCATAACAATAGTTC+CGG | + | chr8.2:71911809-71911828 | MS.gene08500:intron | 20.0% |
| !!! | ACATTAAGCATATTTGTTAA+TGG | - | chr8.2:71912925-71912944 | None:intergenic | 20.0% |
| !!! | AGAAACACTAATTTTTCAAA+AGG | - | chr8.2:71912697-71912716 | None:intergenic | 20.0% |
| !!! | CAAATATTTTCAATTGTGTA+AGG | + | chr8.2:71911391-71911410 | MS.gene08500:intron | 20.0% |
| !!! | CTTATTTTCCTAAAATATAC+AGG | + | chr8.2:71912518-71912537 | MS.gene08500:intron | 20.0% |
| ! | AAAGAATCCTTTCATTCAAA+CGG | - | chr8.2:71911187-71911206 | None:intergenic | 25.0% |
| ! | AATAAGCTTAAAACAGCTTA+TGG | - | chr8.2:71912504-71912523 | None:intergenic | 25.0% |
| ! | AGTTATTATCATACTTACAC+AGG | + | chr8.2:71912087-71912106 | MS.gene08500:intron | 25.0% |
| ! | CAAAAAGACTGGATTAATTA+AGG | + | chr8.2:71911553-71911572 | MS.gene08500:CDS | 25.0% |
| ! | GTTATTATCATACTTACACA+GGG | + | chr8.2:71912088-71912107 | MS.gene08500:intron | 25.0% |
| ! | TAACTATTCAGAAAAAAGCA+TGG | - | chr8.2:71911855-71911874 | None:intergenic | 25.0% |
| ! | TTATTATCATACTTACACAG+GGG | + | chr8.2:71912089-71912108 | MS.gene08500:intron | 25.0% |
| !! | ATGATATTTTGTCTCTGATT+TGG | + | chr8.2:71912992-71913011 | MS.gene08500:intron | 25.0% |
| !! | TAAGCTATCCTGTATATTTT+AGG | - | chr8.2:71912529-71912548 | None:intergenic | 25.0% |
| !! | TGATCTTAATTTTCATATGC+AGG | + | chr8.2:71911357-71911376 | MS.gene08500:intron | 25.0% |
| !! | TTGTTTGTTAAGTAAACTAG+AGG | - | chr8.2:71912068-71912087 | None:intergenic | 25.0% |
| !!! | GGAAAATGTTAAGTATTGAA+GGG | - | chr8.2:71911440-71911459 | None:intergenic | 25.0% |
| AAGAATCCTTTCATTCAAAC+GGG | - | chr8.2:71911186-71911205 | None:intergenic | 30.0% | |
| AGAAATACCTGATCAATCAT+AGG | - | chr8.2:71912007-71912026 | None:intergenic | 30.0% | |
| ATGCACAAATCAAGCTAAAT+AGG | - | chr8.2:71911294-71911313 | None:intergenic | 30.0% | |
| CAAAAGGACAAAGATATGTT+TGG | - | chr8.2:71912681-71912700 | None:intergenic | 30.0% | |
| CTTTAATTCTTCCTATGTTC+AGG | + | chr8.2:71911640-71911659 | MS.gene08500:intron | 30.0% | |
| GCGAAAGAATTTATCATCTA+TGG | + | chr8.2:71912883-71912902 | MS.gene08500:intron | 30.0% | |
| GTTGTTTATCCTCATAACTA+TGG | + | chr8.2:71911686-71911705 | MS.gene08500:CDS | 30.0% | |
| TATGAACTTGACAAAAAGAC+TGG | + | chr8.2:71911542-71911561 | MS.gene08500:CDS | 30.0% | |
| TATTATCATACTTACACAGG+GGG | + | chr8.2:71912090-71912109 | MS.gene08500:intron | 30.0% | |
| TTCTGAATTACTTATATGGC+AGG | + | chr8.2:71911931-71911950 | MS.gene08500:intron | 30.0% | |
| ! | GGACATTTTATGAGTTGTTT+CGG | - | chr8.2:71912483-71912502 | None:intergenic | 30.0% |
| !! | CGGAAAATGTTAAGTATTGA+AGG | - | chr8.2:71911441-71911460 | None:intergenic | 30.0% |
| AAGGACAAAGATATGTTTGG+AGG | - | chr8.2:71912678-71912697 | None:intergenic | 35.0% | |
| ACACACATTAAGTGCCTATT+TGG | + | chr8.2:71912396-71912415 | MS.gene08500:intron | 35.0% | |
| ACTAATGCCTATGATTGATC+AGG | + | chr8.2:71911997-71912016 | MS.gene08500:CDS | 35.0% | |
| AGAATCCTTTCATTCAAACG+GGG | - | chr8.2:71911185-71911204 | None:intergenic | 35.0% | |
| AGACAAGAAGAATGAGAACA+AGG | + | chr8.2:71912730-71912749 | MS.gene08500:intron | 35.0% | |
| AGTATATTCTGCATACCTTG+AGG | + | chr8.2:71913034-71913053 | MS.gene08500:CDS | 35.0% | |
| ATAGGCACTTAATGTGTGTT+TGG | - | chr8.2:71912395-71912414 | None:intergenic | 35.0% | |
| ATGTTGCATAACAAGCTCAT+TGG | + | chr8.2:71912258-71912277 | MS.gene08500:intron | 35.0% | |
| CCAAAAAAGTCGATCCAAAT+AGG | - | chr8.2:71912413-71912432 | None:intergenic | 35.0% | |
| GAAGGATGATAAAATCATCG+CGG | + | chr8.2:71912114-71912133 | MS.gene08500:CDS | 35.0% | |
| GGATTCTTTCATCTTTGTCA+AGG | + | chr8.2:71911198-71911217 | MS.gene08500:CDS | 35.0% | |
| GGGATAAAACCATAGTTATG+AGG | - | chr8.2:71911698-71911717 | None:intergenic | 35.0% | |
| TAAGCATTTGTGAGACAGTT+TGG | + | chr8.2:71912448-71912467 | MS.gene08500:intron | 35.0% | |
| TCAGTATAGTGCTTATACTC+CGG | - | chr8.2:71912154-71912173 | None:intergenic | 35.0% | |
| TGTATACTTACATCGAGTGT+TGG | - | chr8.2:71912805-71912824 | None:intergenic | 35.0% | |
| ! | TAATTTTCATATGCAGGTCC+TGG | + | chr8.2:71911363-71911382 | MS.gene08500:intron | 35.0% |
| !! | AGAAGCGTTTAATCTCCATT+AGG | - | chr8.2:71912201-71912220 | None:intergenic | 35.0% |
| !! | TTGAAAATATTTGGTGCTCC+AGG | - | chr8.2:71911384-71911403 | None:intergenic | 35.0% |
| !! | TTTGTCTCTGATTTGGTGTA+GGG | + | chr8.2:71912999-71913018 | MS.gene08500:intron | 35.0% |
| !!! | CCTATTTGGATCGACTTTTT+TGG | + | chr8.2:71912410-71912429 | MS.gene08500:intron | 35.0% |
| !!! | TTTTGTCTCTGATTTGGTGT+AGG | + | chr8.2:71912998-71913017 | MS.gene08500:intron | 35.0% |
| AATCATAGGCATTAGTCCGA+TGG | - | chr8.2:71911993-71912012 | None:intergenic | 40.0% | |
| AATCCGATCAACCTGAACAT+AGG | - | chr8.2:71911654-71911673 | None:intergenic | 40.0% | |
| ACCAATTTCAAGATCATGCC+AGG | - | chr8.2:71911243-71911262 | None:intergenic | 40.0% | |
| AGAGATCACTAAGGGAAGTA+AGG | + | chr8.2:71911514-71911533 | MS.gene08500:CDS | 40.0% | |
| CAAGAAGAATGAGAACAAGG+AGG | + | chr8.2:71912733-71912752 | MS.gene08500:CDS | 40.0% | |
| CAATTTCAAGATCATGCCAG+GGG | - | chr8.2:71911241-71911260 | None:intergenic | 40.0% | |
| CAGGTTGTAGAGATCACTAA+GGG | + | chr8.2:71911506-71911525 | MS.gene08500:intron | 40.0% | |
| CATAACAATAGTTCCGGTTC+TGG | + | chr8.2:71911815-71911834 | MS.gene08500:intron | 40.0% | |
| CCAATTTCAAGATCATGCCA+GGG | - | chr8.2:71911242-71911261 | None:intergenic | 40.0% | |
| TGTCTTCACATAGAGTTCGA+GGG | - | chr8.2:71911718-71911737 | None:intergenic | 40.0% | |
| TTAATCTCCATTAGGCGATG+AGG | - | chr8.2:71912193-71912212 | None:intergenic | 40.0% | |
| TTAGGTCACAACTCACAACA+AGG | - | chr8.2:71911784-71911803 | None:intergenic | 40.0% | |
| TTGTCTTCACATAGAGTTCG+AGG | - | chr8.2:71911719-71911738 | None:intergenic | 40.0% | |
| TTTCATTCAAACGGGGAGTT+GGG | - | chr8.2:71911178-71911197 | None:intergenic | 40.0% | |
| ! | AATGATTAGTTGCGACATGC+AGG | + | chr8.2:71911487-71911506 | MS.gene08500:intron | 40.0% |
| ! | TCGATATTTCTGTCCAGAAC+CGG | - | chr8.2:71911831-71911850 | None:intergenic | 40.0% |
| !! | CTTCCTATGTTCAGGTTGAT+CGG | + | chr8.2:71911648-71911667 | MS.gene08500:intron | 40.0% |
| !! | TACTTACATCGAGTGTTGGA+TGG | - | chr8.2:71912801-71912820 | None:intergenic | 40.0% |
| ACTTCAACCTCATCGCCTAA+TGG | + | chr8.2:71912183-71912202 | MS.gene08500:CDS | 45.0% | |
| AGGAAACAACCAGGAAGAAC+AGG | - | chr8.2:71911959-71911978 | None:intergenic | 45.0% | |
| ATGAGAACCAAGACATCGAG+TGG | - | chr8.2:71911746-71911765 | None:intergenic | 45.0% | |
| ATGGCATCAACAGCAGTAGA+TGG | - | chr8.2:71912782-71912801 | None:intergenic | 45.0% | |
| CAACTCCCCGTTTGAATGAA+AGG | + | chr8.2:71911177-71911196 | MS.gene08500:CDS | 45.0% | |
| CAATGATCCACTCGATGTCT+TGG | + | chr8.2:71911736-71911755 | MS.gene08500:CDS | 45.0% | |
| CCCTGGCATGATCTTGAAAT+TGG | + | chr8.2:71911239-71911258 | MS.gene08500:CDS | 45.0% | |
| CTTTCATTCAAACGGGGAGT+TGG | - | chr8.2:71911179-71911198 | None:intergenic | 45.0% | |
| GCAGGTTGTAGAGATCACTA+AGG | + | chr8.2:71911505-71911524 | MS.gene08500:intron | 45.0% | |
| !!! | ATTTTCTATTTTTAAATTTT+TGG | + | chr8.2:71912333-71912352 | MS.gene08500:intron | 5.0% |
| CATACTTACACAGGGGGAGA+AGG | + | chr8.2:71912096-71912115 | MS.gene08500:intron | 50.0% | |
| GCAGAAACAGCATAACGCAG+CGG | - | chr8.2:71911461-71911480 | None:intergenic | 50.0% | |
| GCATCAACAGCAGTAGATGG+TGG | - | chr8.2:71912779-71912798 | None:intergenic | 50.0% | |
| ! | CGATGTCTTGGTTCTCATGC+AGG | + | chr8.2:71911748-71911767 | MS.gene08500:CDS | 50.0% |
| ATTCAAACGGGGAGTTGGGC+GGG | - | chr8.2:71911174-71911193 | None:intergenic | 55.0% | |
| CATTCAAACGGGGAGTTGGG+CGG | - | chr8.2:71911175-71911194 | None:intergenic | 55.0% | |
| CTTGCTCGCAGGAAACAACC+AGG | - | chr8.2:71911968-71911987 | None:intergenic | 55.0% | |
| TTCCTGCGAGCAAGAGCCAT+CGG | + | chr8.2:71911974-71911993 | MS.gene08500:CDS | 55.0% | |
| GATCAGTTGCTGCTCACCCC+TGG | + | chr8.2:71911222-71911241 | MS.gene08500:CDS | 60.0% | |
| TGGCAGGAGCCTGTTCTTCC+TGG | + | chr8.2:71911947-71911966 | MS.gene08500:intron | 60.0% | |
| ! | CGCGGTATGCGCTGATGATC+CGG | + | chr8.2:71912132-71912151 | MS.gene08500:CDS | 60.0% |
| GTCCGATGGCTCTTGCTCGC+AGG | - | chr8.2:71911979-71911998 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 71911137 | 71913062 | 71911137 | ID=MS.gene08500 |
| chr8.2 | mRNA | 71911137 | 71913062 | 71911137 | ID=MS.gene08500.t1;Parent=MS.gene08500 |
| chr8.2 | exon | 71911137 | 71911260 | 71911137 | ID=MS.gene08500.t1.exon1;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71911137 | 71911260 | 71911137 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71911379 | 71911407 | 71911379 | ID=MS.gene08500.t1.exon2;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71911379 | 71911407 | 71911379 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71911509 | 71911574 | 71911509 | ID=MS.gene08500.t1.exon3;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71911509 | 71911574 | 71911509 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71911662 | 71911769 | 71911662 | ID=MS.gene08500.t1.exon4;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71911662 | 71911769 | 71911662 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71911953 | 71912018 | 71911953 | ID=MS.gene08500.t1.exon5;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71911953 | 71912018 | 71911953 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71912109 | 71912229 | 71912109 | ID=MS.gene08500.t1.exon6;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71912109 | 71912229 | 71912109 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71912732 | 71912813 | 71912732 | ID=MS.gene08500.t1.exon7;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71912732 | 71912813 | 71912732 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| chr8.2 | exon | 71913020 | 71913062 | 71913020 | ID=MS.gene08500.t1.exon8;Parent=MS.gene08500.t1 |
| chr8.2 | CDS | 71913020 | 71913062 | 71913020 | ID=cds.MS.gene08500.t1;Parent=MS.gene08500.t1 |
| Gene Sequence |
| Protein sequence |
