Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060578.t1 | XP_003596337.1 | 98.2 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 5.00E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060578.t1 | P16273 | 48.4 | 221 | 110 | 3 | 8 | 224 | 9 | 229 | 6.8e-58 | 225.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060578.t1 | Q2HSC5 | 98.2 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 3.6e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene060578 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene060578 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene051632 | MS.gene060578 | 0.804396 | 2.20E-49 | -1.69E-46 |
| MS.gene053488 | MS.gene060578 | 0.804828 | 1.79E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene060578 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene060578 | 0.829368 | 5.35E-55 | -1.69E-46 |
| MS.gene056920 | MS.gene060578 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene056924 | MS.gene060578 | 0.80399 | 2.68E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene060578 | 0.825534 | 4.45E-54 | -1.69E-46 |
| MS.gene058179 | MS.gene060578 | 0.836712 | 7.97E-57 | -1.69E-46 |
| MS.gene059037 | MS.gene060578 | 0.823571 | 1.29E-53 | -1.69E-46 |
| MS.gene059223 | MS.gene060578 | 0.811831 | 5.75E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene060578 | 0.980806 | 4.46E-151 | -1.69E-46 |
| MS.gene060578 | MS.gene063364 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene06593 | 0.805775 | 1.13E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene066937 | 0.809154 | 2.18E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene068296 | 0.804335 | 2.27E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene068297 | 0.837899 | 3.96E-57 | -1.69E-46 |
| MS.gene060578 | MS.gene069431 | 0.832833 | 7.54E-56 | -1.69E-46 |
| MS.gene060578 | MS.gene071838 | 0.822864 | 1.89E-53 | -1.69E-46 |
| MS.gene060578 | MS.gene071840 | 0.809585 | 1.76E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene072609 | 0.809899 | 1.51E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene073777 | 0.833456 | 5.28E-56 | -1.69E-46 |
| MS.gene060578 | MS.gene07591 | 0.80043 | 1.45E-48 | -1.69E-46 |
| MS.gene060578 | MS.gene08407 | 0.801821 | 7.51E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene08500 | 0.800141 | 1.66E-48 | -1.69E-46 |
| MS.gene060578 | MS.gene21768 | 0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene21856 | 0.811309 | 7.47E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene24576 | 0.830277 | 3.21E-55 | -1.69E-46 |
| MS.gene060578 | MS.gene24974 | 0.838087 | 3.54E-57 | -1.69E-46 |
| MS.gene060578 | MS.gene26289 | 0.803708 | 3.06E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene26517 | 0.815762 | 7.83E-52 | -1.69E-46 |
| MS.gene060578 | MS.gene30911 | 0.833251 | 5.94E-56 | -1.69E-46 |
| MS.gene060578 | MS.gene32342 | 0.801975 | 6.99E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene33428 | 0.807367 | 5.23E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene33682 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene39533 | 0.804833 | 1.79E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene39635 | 0.813151 | 2.96E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene42096 | 0.811474 | 6.88E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene48169 | 0.810132 | 1.34E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene48183 | 0.816924 | 4.30E-52 | -1.69E-46 |
| MS.gene060578 | MS.gene48184 | 0.803096 | 4.10E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene55801 | 0.801128 | 1.04E-48 | -1.69E-46 |
| MS.gene060578 | MS.gene56009 | 0.812811 | 3.51E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene59006 | 0.8326 | 8.62E-56 | -1.69E-46 |
| MS.gene060578 | MS.gene59273 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene62114 | 0.81407 | 1.86E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene63731 | 0.870973 | 9.73E-67 | -1.69E-46 |
| MS.gene060578 | MS.gene65287 | 0.803697 | 3.08E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene66895 | 0.841643 | 4.20E-58 | -1.69E-46 |
| MS.gene060578 | MS.gene67371 | 0.81809 | 2.35E-52 | -1.69E-46 |
| MS.gene060578 | MS.gene68121 | 0.805688 | 1.18E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene71346 | 0.803223 | 3.86E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene75396 | 0.817835 | 2.68E-52 | -1.69E-46 |
| MS.gene060578 | MS.gene81770 | 0.839667 | 1.38E-57 | -1.69E-46 |
| MS.gene060578 | MS.gene81774 | 0.805777 | 1.13E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene82532 | 0.834288 | 3.27E-56 | -1.69E-46 |
| MS.gene060578 | MS.gene84568 | 0.810447 | 1.15E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene85750 | 0.814187 | 1.75E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene87043 | 0.806922 | 6.50E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene94790 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene060578 | MS.gene97500 | 0.823132 | 1.63E-53 | -1.69E-46 |
| MS.gene060578 | MS.gene98076 | 0.803377 | 3.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060578.t1 | MTR_2g076070 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.78e-167 | 461 |
| MS.gene060578.t1 | MTR_2g076010 | 90.749 | 227 | 21 | 0 | 1 | 227 | 1 | 227 | 6.37e-157 | 434 |
| MS.gene060578.t1 | MTR_8g058350 | 75.330 | 227 | 51 | 2 | 5 | 226 | 10 | 236 | 5.99e-126 | 356 |
| MS.gene060578.t1 | MTR_2g076070 | 97.561 | 164 | 4 | 0 | 64 | 227 | 1 | 164 | 1.84e-116 | 329 |
| MS.gene060578.t1 | MTR_2g076010 | 89.634 | 164 | 17 | 0 | 64 | 227 | 1 | 164 | 1.62e-108 | 309 |
| MS.gene060578.t1 | MTR_8g058700 | 47.525 | 101 | 22 | 2 | 90 | 190 | 13 | 82 | 5.80e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060578.t1 | AT1G78780 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.20e-121 | 344 |
| MS.gene060578.t1 | AT1G78780 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.20e-121 | 344 |
| MS.gene060578.t1 | AT1G78780 | 69.874 | 239 | 59 | 3 | 1 | 227 | 1 | 238 | 1.46e-120 | 342 |
| MS.gene060578.t1 | AT1G78780 | 68.619 | 239 | 59 | 4 | 1 | 227 | 1 | 235 | 3.50e-116 | 331 |
| MS.gene060578.t1 | AT1G78780 | 70.455 | 176 | 40 | 2 | 64 | 227 | 1 | 176 | 1.91e-87 | 256 |
Find 61 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAGTTCTTTGTTAA+TGG | 0.183252 | 2.2:-17681797 | MS.gene060578:intron |
| GTAAACAACTTATGATTAAT+TGG | 0.225426 | 2.2:+17679438 | None:intergenic |
| CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | 2.2:-17680314 | MS.gene060578:CDS |
| CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | 2.2:+17680315 | None:intergenic |
| TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | 2.2:-17680307 | MS.gene060578:CDS |
| GTCTCTTCATTTGACTTGTA+TGG | 0.318507 | 2.2:+17680420 | None:intergenic |
| GTTTCCTCCAATGATCCTTC+TGG | 0.340734 | 2.2:+17681902 | None:intergenic |
| GTAGGGGCATGTCCCTTAAA+AGG | 0.343475 | 2.2:+17680270 | None:intergenic |
| TTGTATGGCTTGAAATCTTC+AGG | 0.351240 | 2.2:+17680435 | None:intergenic |
| TCCTTCCTTCTTCAAAGAGC+TGG | 0.367470 | 2.2:+17682033 | None:intergenic |
| TATGACCCAGGAGAGTTGTT+TGG | 0.376206 | 2.2:-17679511 | MS.gene060578:CDS |
| GAATGGACATGCTGAAGTTT+TGG | 0.380812 | 2.2:+17679462 | None:intergenic |
| GACACACAAGATCCGCTTGC+AGG | 0.389775 | 2.2:-17681843 | MS.gene060578:CDS |
| TGCTATCTCCGCTTGATAGA+AGG | 0.400178 | 2.2:+17679485 | None:intergenic |
| AGGCATTGGGGATTCTTTGA+AGG | 0.405743 | 2.2:-17680294 | MS.gene060578:CDS |
| TCTTGGAAAAGCTGATTTGA+AGG | 0.414467 | 2.2:+17680377 | None:intergenic |
| GATGGTCCAATTCTCTGGCT+TGG | 0.418419 | 2.2:-17680241 | MS.gene060578:CDS |
| ATGGTCCAATTCTCTGGCTT+GGG | 0.433013 | 2.2:-17680240 | MS.gene060578:CDS |
| ATTTCCCATGCAAATCCTCT+TGG | 0.434442 | 2.2:+17680360 | None:intergenic |
| GAGTTCCCAAGCCAGAGAAT+TGG | 0.445368 | 2.2:+17680235 | None:intergenic |
| GGAAAGATGGTCCAATTCTC+TGG | 0.445571 | 2.2:-17680246 | MS.gene060578:CDS |
| GTCAACCAGCTCTTTGAAGA+AGG | 0.445909 | 2.2:-17682038 | MS.gene060578:CDS |
| TTTAAGGGACATGCCCCTAC+TGG | 0.446687 | 2.2:-17680267 | MS.gene060578:CDS |
| CTAGGTGGATGACACTTTGA+AGG | 0.455213 | 2.2:-17679554 | MS.gene060578:intron |
| AGGCCTCCAAACAACTCTCC+TGG | 0.465379 | 2.2:+17679505 | None:intergenic |
| ACTTATGATTAATTGGAGAA+TGG | 0.470422 | 2.2:+17679445 | None:intergenic |
| TGCAAAATGCTATTAAGTCA+TGG | 0.470507 | 2.2:-17681877 | MS.gene060578:CDS |
| CACTTTGAAGGTTGAAGAAG+TGG | 0.475985 | 2.2:-17679542 | MS.gene060578:CDS |
| CATGGTGGCCCTCCCACCTA+TGG | 0.478252 | 2.2:-17682065 | MS.gene060578:CDS |
| GGAATGGCCAGAAGGATCAT+TGG | 0.485397 | 2.2:-17681909 | MS.gene060578:CDS |
| TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | 2.2:-17680308 | MS.gene060578:CDS |
| TGCTATTAAGTCATGGGAGA+TGG | 0.500588 | 2.2:-17681870 | MS.gene060578:CDS |
| GACCCAGGAGAGTTGTTTGG+AGG | 0.521378 | 2.2:-17679508 | MS.gene060578:CDS |
| TTTCTAATTGCAGGCAGGGA+GGG | 0.527343 | 2.2:-17680519 | MS.gene060578:intron |
| GGCCTCCAAACAACTCTCCT+GGG | 0.528244 | 2.2:+17679506 | None:intergenic |
| GCAAAATGCTATTAAGTCAT+GGG | 0.533576 | 2.2:-17681876 | MS.gene060578:CDS |
| ACATGCCCCTACTGGAAAGA+TGG | 0.534599 | 2.2:-17680259 | MS.gene060578:CDS |
| GAGAATATCCAGTGGAGACA+TGG | 0.538003 | 2.2:-17682083 | MS.gene060578:CDS |
| CTCTGGCTTGGGAACTCTCA+AGG | 0.542832 | 2.2:-17680229 | MS.gene060578:intron |
| CTGGTTGACAAGACCATAGG+TGG | 0.543209 | 2.2:+17682052 | None:intergenic |
| GAGGGCCACCATGTCTCCAC+TGG | 0.548695 | 2.2:+17682075 | None:intergenic |
| ATTGGACCATCTTTCCAGTA+GGG | 0.558086 | 2.2:+17680253 | None:intergenic |
| AATTGGACCATCTTTCCAGT+AGG | 0.570938 | 2.2:+17680252 | None:intergenic |
| ACCAGCTCTTTGAAGAAGGA+AGG | 0.578694 | 2.2:-17682034 | MS.gene060578:CDS |
| GTGGAGATTTACTATGACCC+AGG | 0.582286 | 2.2:-17679523 | MS.gene060578:CDS |
| GCAGAGGAAACTCTAAGCAT+AGG | 0.582569 | 2.2:-17680489 | MS.gene060578:CDS |
| GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | 2.2:-17680306 | MS.gene060578:CDS |
| TGACAAGACCATAGGTGGGA+GGG | 0.603232 | 2.2:+17682057 | None:intergenic |
| TTTGGAGGCCTTCTATCAAG+CGG | 0.613986 | 2.2:-17679493 | MS.gene060578:CDS |
| TTGGACCATCTTTCCAGTAG+GGG | 0.615171 | 2.2:+17680254 | None:intergenic |
| ATGGCCAGAAGGATCATTGG+AGG | 0.617256 | 2.2:-17681906 | MS.gene060578:CDS |
| GAGCTGGTTGACAAGACCAT+AGG | 0.618838 | 2.2:+17682049 | None:intergenic |
| AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | 2.2:+17680318 | None:intergenic |
| GAAATCATTAAAGTTTACAC+AGG | 0.640637 | 2.2:-17680342 | MS.gene060578:CDS |
| TGGTCTTGAAGTCCTGCAAG+CGG | 0.649941 | 2.2:+17681831 | None:intergenic |
| ATTTCTAATTGCAGGCAGGG+AGG | 0.661707 | 2.2:-17680520 | MS.gene060578:intron |
| AATATCCAGTGGAGACATGG+TGG | 0.668708 | 2.2:-17682080 | MS.gene060578:CDS |
| CAGGGAGGGATTAACTGCAG+AGG | 0.669645 | 2.2:-17680505 | MS.gene060578:CDS |
| TTGACAAGACCATAGGTGGG+AGG | 0.674543 | 2.2:+17682056 | None:intergenic |
| ATGAAGCTGAGAATATCCAG+TGG | 0.685948 | 2.2:-17682091 | MS.gene060578:CDS |
| TGGTTGACAAGACCATAGGT+GGG | 0.689395 | 2.2:+17682053 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTTAAATATAATAA+AGG | - | chr2.2:17681642-17681661 | MS.gene060578:intron | 0.0% |
| !! | AATTTAAATATAATAAAGGA+AGG | - | chr2.2:17681646-17681665 | MS.gene060578:intron | 10.0% |
| !! | TAAAATAAATGATAATCTAA+TGG | + | chr2.2:17681919-17681938 | None:intergenic | 10.0% |
| !!! | GATAAAAATTATTTCAATTT+TGG | - | chr2.2:17680088-17680107 | MS.gene060578:intron | 10.0% |
| !! | GAATTATACAAAATTATTAG+TGG | - | chr2.2:17679979-17679998 | MS.gene060578:intron | 15.0% |
| !! | TATGAATTATAATTCTATGA+AGG | - | chr2.2:17679888-17679907 | MS.gene060578:intron | 15.0% |
| !! | TTAAAATGAGAAATTTAACA+TGG | + | chr2.2:17681501-17681520 | None:intergenic | 15.0% |
| !!! | AACAATAATTTTTTTAACCT+AGG | - | chr2.2:17682018-17682037 | MS.gene060578:intron | 15.0% |
| !!! | ATTGAAATAATTTTTATCCA+AGG | + | chr2.2:17680086-17680105 | None:intergenic | 15.0% |
| !!! | GAATTTTAATTATATTCACT+AGG | + | chr2.2:17681035-17681054 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCAATGTTTTTT+TGG | + | chr2.2:17681721-17681740 | None:intergenic | 15.0% |
| !!! | TTTTCTTAACAAATTTTTGT+AGG | - | chr2.2:17679660-17679679 | MS.gene060578:intron | 15.0% |
| !! | AAAATTGAGAAAGAATTACA+TGG | + | chr2.2:17679644-17679663 | None:intergenic | 20.0% |
| !! | AATTAATAAGAAAATACCCA+TGG | + | chr2.2:17681551-17681570 | None:intergenic | 20.0% |
| !! | AATTATAATTCTATGAAGGA+CGG | - | chr2.2:17679892-17679911 | MS.gene060578:intron | 20.0% |
| !! | AGATTAATGAATATACCAAT+AGG | + | chr2.2:17680223-17680242 | None:intergenic | 20.0% |
| !! | AGTGATGTATAAAATATAGA+GGG | + | chr2.2:17681994-17682013 | None:intergenic | 20.0% |
| !! | ATGATCTGAATTTAATTGTT+TGG | - | chr2.2:17681408-17681427 | MS.gene060578:intron | 20.0% |
| !! | ATTAATAAGAAAATACCCAT+GGG | + | chr2.2:17681550-17681569 | None:intergenic | 20.0% |
| !! | TAACTATAGAAATTAGATAC+AGG | + | chr2.2:17681001-17681020 | None:intergenic | 20.0% |
| !! | TAATATATGAAACATGGATA+CGG | + | chr2.2:17680046-17680065 | None:intergenic | 20.0% |
| !! | TAGTGATGTATAAAATATAG+AGG | + | chr2.2:17681995-17682014 | None:intergenic | 20.0% |
| !! | TATTATTAATTGGATTCAAG+TGG | - | chr2.2:17680799-17680818 | MS.gene060578:intron | 20.0% |
| !!! | AAATTCAAGTTCTTTGTTAA+TGG | - | chr2.2:17679793-17679812 | MS.gene060578:intron | 20.0% |
| !!! | AACAGCTATATTTTTTACTT+CGG | + | chr2.2:17680368-17680387 | None:intergenic | 20.0% |
| !!! | AAGTTAGCAATGATTTTTTT+AGG | - | chr2.2:17680722-17680741 | MS.gene060578:intron | 20.0% |
| !!! | AATAATTTTTTTAACCTAGG+TGG | - | chr2.2:17682021-17682040 | MS.gene060578:intron | 20.0% |
| !!! | AATTCAATATTTCTAATTGC+AGG | - | chr2.2:17681062-17681081 | MS.gene060578:intron | 20.0% |
| !!! | AGTTAGCAATGATTTTTTTA+GGG | - | chr2.2:17680723-17680742 | MS.gene060578:intron | 20.0% |
| !!! | GTAAATGATTCAAATTTGTT+TGG | - | chr2.2:17679822-17679841 | MS.gene060578:intron | 20.0% |
| !!! | TAAATTTTAATGTTATCCCT+TGG | + | chr2.2:17681632-17681651 | None:intergenic | 20.0% |
| !!! | TATCAAAATTTGAGATCAAT+TGG | - | chr2.2:17680971-17680990 | MS.gene060578:intron | 20.0% |
| !!! | TGAGAAATTTAAAATGATCA+AGG | + | chr2.2:17681456-17681475 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTTTGTAGGAA+TGG | - | chr2.2:17679665-17679684 | MS.gene060578:intron | 20.0% |
| !!! | TTTATCTTTTTAATGGGTTT+AGG | - | chr2.2:17680139-17680158 | MS.gene060578:intron | 20.0% |
| ! | AAATGGAGAATAAGATTAAG+AGG | + | chr2.2:17679603-17679622 | None:intergenic | 25.0% |
| ! | AATGGAGAATAAGATTAAGA+GGG | + | chr2.2:17679602-17679621 | None:intergenic | 25.0% |
| ! | AGTGATATGATATATGTGAT+AGG | + | chr2.2:17681844-17681863 | None:intergenic | 25.0% |
| ! | ATATGATATATGTGATAGGT+CGG | + | chr2.2:17681840-17681859 | None:intergenic | 25.0% |
| ! | CGATCATAATATATGAAACA+TGG | + | chr2.2:17680052-17680071 | None:intergenic | 25.0% |
| ! | GAAATCATTAAAGTTTACAC+AGG | - | chr2.2:17681248-17681267 | MS.gene060578:intron | 25.0% |
| ! | TATTAAACTTCGATTCTAAG+AGG | + | chr2.2:17680944-17680963 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATACCCATG+GGG | + | chr2.2:17681549-17681568 | None:intergenic | 25.0% |
| !! | ACAAAGAACTTGAATTTTTC+AGG | + | chr2.2:17679790-17679809 | None:intergenic | 25.0% |
| !! | CAAAGAACTTGAATTTTTCA+GGG | + | chr2.2:17679789-17679808 | None:intergenic | 25.0% |
| !! | GAAATAATTTTTATCCAAGG+TGG | + | chr2.2:17680083-17680102 | None:intergenic | 25.0% |
| !! | TTAATTTTTACTGCAAGCAA+AGG | - | chr2.2:17681517-17681536 | MS.gene060578:intron | 25.0% |
| !! | TTTGATTCGTCAAAAAACAA+AGG | - | chr2.2:17680652-17680671 | MS.gene060578:intron | 25.0% |
| !!! | GTTAGCAATGATTTTTTTAG+GGG | - | chr2.2:17680724-17680743 | MS.gene060578:intron | 25.0% |
| AAAAAGTTGTTCTCATAAGG+TGG | + | chr2.2:17681967-17681986 | None:intergenic | 30.0% | |
| AAACAAAACACCAATGTTCT+TGG | + | chr2.2:17680424-17680443 | None:intergenic | 30.0% | |
| AAATAGAAAGGAAGATACCA+AGG | - | chr2.2:17681612-17681631 | MS.gene060578:intron | 30.0% | |
| AATAGAAAGGAAGATACCAA+GGG | - | chr2.2:17681613-17681632 | MS.gene060578:intron | 30.0% | |
| AGGAATGAGTTATGGTAATT+CGG | + | chr2.2:17680924-17680943 | None:intergenic | 30.0% | |
| AGTAGAATACGTAGAAAACT+TGG | - | chr2.2:17680276-17680295 | MS.gene060578:CDS | 30.0% | |
| AGTTATGGTAATTCGGAATT+CGG | + | chr2.2:17680917-17680936 | None:intergenic | 30.0% | |
| ATAATCTAGAGAGGAAGAAA+TGG | + | chr2.2:17679620-17679639 | None:intergenic | 30.0% | |
| ATCAGACTATACTTACCAAA+CGG | - | chr2.2:17680891-17680910 | MS.gene060578:intron | 30.0% | |
| ATTAATTGGATTCAAGTGGT+TGG | - | chr2.2:17680803-17680822 | MS.gene060578:intron | 30.0% | |
| CTAAACTTGAAAGCAATTTC+AGG | + | chr2.2:17681278-17681297 | None:intergenic | 30.0% | |
| GATGTATAAAATATAGAGGG+TGG | + | chr2.2:17681991-17682010 | None:intergenic | 30.0% | |
| GCAAAATGCTATTAAGTCAT+GGG | - | chr2.2:17679714-17679733 | MS.gene060578:intron | 30.0% | |
| GGTAAAAAGTTGTTCTCATA+AGG | + | chr2.2:17681970-17681989 | None:intergenic | 30.0% | |
| TGCAAAATGCTATTAAGTCA+TGG | - | chr2.2:17679713-17679732 | MS.gene060578:intron | 30.0% | |
| TTACATGGTATAATCTAGAG+AGG | + | chr2.2:17679629-17679648 | None:intergenic | 30.0% | |
| ! | AATATTTCTAATTGCAGGCA+GGG | - | chr2.2:17681067-17681086 | MS.gene060578:intron | 30.0% |
| ! | AATTTTTATCCAAGGTGGAT+AGG | + | chr2.2:17680078-17680097 | None:intergenic | 30.0% |
| ! | ATTCTAAGAGGAATGAGTTA+TGG | + | chr2.2:17680932-17680951 | None:intergenic | 30.0% |
| !! | ATTCTTTGAAGGTCCTTTTA+AGG | - | chr2.2:17681307-17681326 | MS.gene060578:intron | 30.0% |
| !! | CTGAAATTGCTTTCAAGTTT+AGG | - | chr2.2:17681276-17681295 | MS.gene060578:intron | 30.0% |
| !! | TTCTTTGAAGGTCCTTTTAA+GGG | - | chr2.2:17681308-17681327 | MS.gene060578:intron | 30.0% |
| !!! | TTAATTTGTTTTGCGTGTGT+AGG | - | chr2.2:17681565-17681584 | MS.gene060578:intron | 30.0% |
| !!! | TTTTTTCCTAAATCATCGCT+TGG | + | chr2.2:17680176-17680195 | None:intergenic | 30.0% |
| AACTTGAAAGCAATTTCAGG+TGG | + | chr2.2:17681275-17681294 | None:intergenic | 35.0% | |
| ACAAGTGAAGGAATCACTTT+AGG | + | chr2.2:17680338-17680357 | None:intergenic | 35.0% | |
| ATGAAACATGGATACGGATA+CGG | + | chr2.2:17680040-17680059 | None:intergenic | 35.0% | |
| ATTCAAACCCAGCATCATAA+CGG | + | chr2.2:17680617-17680636 | None:intergenic | 35.0% | |
| CTTGTACTTTGCTTAGACTT+TGG | - | chr2.2:17680456-17680475 | MS.gene060578:CDS | 35.0% | |
| GAACAAACGATTGTGAAGAT+GGG | - | chr2.2:17680581-17680600 | MS.gene060578:intron | 35.0% | |
| GAGGCTGTAATCAAATAGAA+AGG | - | chr2.2:17681600-17681619 | MS.gene060578:intron | 35.0% | |
| GTGGAGCAAGAGAATAAAAA+CGG | + | chr2.2:17681948-17681967 | None:intergenic | 35.0% | |
| TGGAGCAAGAGAATAAAAAC+GGG | + | chr2.2:17681947-17681966 | None:intergenic | 35.0% | |
| TTGTATGGCTTGAAATCTTC+AGG | + | chr2.2:17681158-17681177 | None:intergenic | 35.0% | |
| ! | AATTTTCCCGTTATGATGCT+GGG | - | chr2.2:17680607-17680626 | MS.gene060578:intron | 35.0% |
| ! | CAATATTTCTAATTGCAGGC+AGG | - | chr2.2:17681066-17681085 | MS.gene060578:intron | 35.0% |
| ! | TGTTCTTTCTAGTAGTAGAG+CGG | - | chr2.2:17680395-17680414 | MS.gene060578:CDS | 35.0% |
| ! | TGTTTTCCAAGCGATGATTT+AGG | - | chr2.2:17680167-17680186 | MS.gene060578:intron | 35.0% |
| ! | TTCAAATCAGCTTTTCCAAG+AGG | - | chr2.2:17681215-17681234 | MS.gene060578:intron | 35.0% |
| ! | TTTTCCAAGAGGATTTGCAT+GGG | - | chr2.2:17681226-17681245 | MS.gene060578:intron | 35.0% |
| !! | GTCTCTTCATTTGACTTGTA+TGG | + | chr2.2:17681173-17681192 | None:intergenic | 35.0% |
| !! | TCTTGGAAAAGCTGATTTGA+AGG | + | chr2.2:17681216-17681235 | None:intergenic | 35.0% |
| !! | TGCTTTCAAGTTTAGGCATT+GGG | - | chr2.2:17681283-17681302 | MS.gene060578:intron | 35.0% |
| !! | TTGCTTTCAAGTTTAGGCAT+TGG | - | chr2.2:17681282-17681301 | MS.gene060578:intron | 35.0% |
| !!! | CTTGAATTTTTCAGGGACAA+TGG | + | chr2.2:17679782-17679801 | None:intergenic | 35.0% |
| AATTGGACCATCTTTCCAGT+AGG | + | chr2.2:17681341-17681360 | None:intergenic | 40.0% | |
| AGCAAGAGAATAAAAACGGG+TGG | + | chr2.2:17681944-17681963 | None:intergenic | 40.0% | |
| AGGGTGTGATGATTTCACTT+TGG | + | chr2.2:17679583-17679602 | None:intergenic | 40.0% | |
| ATGAAGCTGAGAATATCCAG+TGG | - | chr2.2:17679499-17679518 | MS.gene060578:CDS | 40.0% | |
| ATTGGACCATCTTTCCAGTA+GGG | + | chr2.2:17681340-17681359 | None:intergenic | 40.0% | |
| ATTTCCCATGCAAATCCTCT+TGG | + | chr2.2:17681233-17681252 | None:intergenic | 40.0% | |
| CCATCAAAGACAAATCGTTC+AGG | - | chr2.2:17680834-17680853 | MS.gene060578:intron | 40.0% | |
| CCTGAACGATTTGTCTTTGA+TGG | + | chr2.2:17680837-17680856 | None:intergenic | 40.0% | |
| CGAACAAACGATTGTGAAGA+TGG | - | chr2.2:17680580-17680599 | MS.gene060578:intron | 40.0% | |
| CGCATGTAAGAGACTTTGTA+TGG | - | chr2.2:17680544-17680563 | MS.gene060578:intron | 40.0% | |
| GCTTACATCAACGATCCTAT+TGG | - | chr2.2:17680205-17680224 | MS.gene060578:intron | 40.0% | |
| GGAGAATGAGTTCGATTTCT+AGG | - | chr2.2:17680855-17680874 | MS.gene060578:intron | 40.0% | |
| TATGAAGGACGGACAATCAT+CGG | - | chr2.2:17679903-17679922 | MS.gene060578:intron | 40.0% | |
| TGCTATTAAGTCATGGGAGA+TGG | - | chr2.2:17679720-17679739 | MS.gene060578:intron | 40.0% | |
| TTCAAACCCAGCATCATAAC+GGG | + | chr2.2:17680616-17680635 | None:intergenic | 40.0% | |
| TTCGGATGATACACAAGTGA+AGG | + | chr2.2:17680350-17680369 | None:intergenic | 40.0% | |
| ! | AATTCAGTTCGTGTCGTTGT+CGG | + | chr2.2:17679964-17679983 | None:intergenic | 40.0% |
| ! | CACTTTGAAGGTTGAAGAAG+TGG | - | chr2.2:17682048-17682067 | MS.gene060578:CDS | 40.0% |
| ! | CTTTTCCAAGAGGATTTGCA+TGG | - | chr2.2:17681225-17681244 | MS.gene060578:intron | 40.0% |
| ! | GAATGGACATGCTGAAGTTT+TGG | + | chr2.2:17682131-17682150 | None:intergenic | 40.0% |
| ! | GAATTTTCCCGTTATGATGC+TGG | - | chr2.2:17680606-17680625 | MS.gene060578:intron | 40.0% |
| ! | TTTTTGTAGGAATGGCCAGA+AGG | - | chr2.2:17679673-17679692 | MS.gene060578:intron | 40.0% |
| !! | GCTTTCAAGTTTAGGCATTG+GGG | - | chr2.2:17681284-17681303 | MS.gene060578:intron | 40.0% |
| AATATCCAGTGGAGACATGG+TGG | - | chr2.2:17679510-17679529 | MS.gene060578:CDS | 45.0% | |
| ATCTGTATCTGTGTCGTGTC+TGG | - | chr2.2:17680011-17680030 | MS.gene060578:intron | 45.0% | |
| ATTTCTAATTGCAGGCAGGG+AGG | - | chr2.2:17681070-17681089 | MS.gene060578:intron | 45.0% | |
| CTAGGTGGATGACACTTTGA+AGG | - | chr2.2:17682036-17682055 | MS.gene060578:CDS | 45.0% | |
| GAGAATATCCAGTGGAGACA+TGG | - | chr2.2:17679507-17679526 | MS.gene060578:CDS | 45.0% | |
| GCAGAGGAAACTCTAAGCAT+AGG | - | chr2.2:17681101-17681120 | MS.gene060578:intron | 45.0% | |
| GGAAAGATGGTCCAATTCTC+TGG | - | chr2.2:17681344-17681363 | MS.gene060578:intron | 45.0% | |
| GTGGAGATTTACTATGACCC+AGG | - | chr2.2:17682067-17682086 | MS.gene060578:CDS | 45.0% | |
| GTTTCCTCCAATGATCCTTC+TGG | + | chr2.2:17679691-17679710 | None:intergenic | 45.0% | |
| TAATTCGGAATTCGGCCGTT+TGG | + | chr2.2:17680909-17680928 | None:intergenic | 45.0% | |
| TATGACCCAGGAGAGTTGTT+TGG | - | chr2.2:17682079-17682098 | MS.gene060578:CDS | 45.0% | |
| TATGTGATAGGTCGGAGATG+TGG | + | chr2.2:17681832-17681851 | None:intergenic | 45.0% | |
| TCCTTCCTTCTTCAAAGAGC+TGG | + | chr2.2:17679560-17679579 | None:intergenic | 45.0% | |
| TGCTATCTCCGCTTGATAGA+AGG | + | chr2.2:17682108-17682127 | None:intergenic | 45.0% | |
| TGGTTGACAAGACCATAGGT+GGG | + | chr2.2:17679540-17679559 | None:intergenic | 45.0% | |
| TTGGACCATCTTTCCAGTAG+GGG | + | chr2.2:17681339-17681358 | None:intergenic | 45.0% | |
| TTTACTGCAAGCAAAGGCCA+TGG | - | chr2.2:17681523-17681542 | MS.gene060578:intron | 45.0% | |
| TTTCTAATTGCAGGCAGGGA+GGG | - | chr2.2:17681071-17681090 | MS.gene060578:intron | 45.0% | |
| TTTGGAGGCCTTCTATCAAG+CGG | - | chr2.2:17682097-17682116 | MS.gene060578:CDS | 45.0% | |
| ! | ACCAGCTCTTTGAAGAAGGA+AGG | - | chr2.2:17679556-17679575 | MS.gene060578:intron | 45.0% |
| ! | ATGGTCCAATTCTCTGGCTT+GGG | - | chr2.2:17681350-17681369 | MS.gene060578:intron | 45.0% |
| ! | ATTCAGTTCGTGTCGTTGTC+GGG | + | chr2.2:17679963-17679982 | None:intergenic | 45.0% |
| ! | CTTCAAAGTGTCATCCACCT+AGG | + | chr2.2:17682038-17682057 | None:intergenic | 45.0% |
| ! | GTCAACCAGCTCTTTGAAGA+AGG | - | chr2.2:17679552-17679571 | MS.gene060578:CDS | 45.0% |
| ! | GTGTAGGTTGACTTTGTACG+AGG | - | chr2.2:17681581-17681600 | MS.gene060578:intron | 45.0% |
| !! | AGGCATTGGGGATTCTTTGA+AGG | - | chr2.2:17681296-17681315 | MS.gene060578:intron | 45.0% |
| !!! | ATTTTTATTTATCTTTTTAA+TGG | - | chr2.2:17680132-17680151 | MS.gene060578:intron | 5.0% |
| !!! | ATTTTTTGAATATTATTAAT+TGG | - | chr2.2:17680789-17680808 | MS.gene060578:intron | 5.0% |
| !!! | TTTTTATTTATCTTTTTAAT+GGG | - | chr2.2:17680133-17680152 | MS.gene060578:intron | 5.0% |
| ACATGCCCCTACTGGAAAGA+TGG | - | chr2.2:17681331-17681350 | MS.gene060578:intron | 50.0% | |
| AGAAAATACCCATGGGGCCA+TGG | + | chr2.2:17681543-17681562 | None:intergenic | 50.0% | |
| ATGGCCAGAAGGATCATTGG+AGG | - | chr2.2:17679684-17679703 | MS.gene060578:intron | 50.0% | |
| CTGGTTGACAAGACCATAGG+TGG | + | chr2.2:17679541-17679560 | None:intergenic | 50.0% | |
| GAGCTGGTTGACAAGACCAT+AGG | + | chr2.2:17679544-17679563 | None:intergenic | 50.0% | |
| GAGTTCCCAAGCCAGAGAAT+TGG | + | chr2.2:17681358-17681377 | None:intergenic | 50.0% | |
| GATGGTCCAATTCTCTGGCT+TGG | - | chr2.2:17681349-17681368 | MS.gene060578:intron | 50.0% | |
| GATTAGGCGTGTCCTGGTAT+CGG | - | chr2.2:17679925-17679944 | MS.gene060578:intron | 50.0% | |
| GGAATGGCCAGAAGGATCAT+TGG | - | chr2.2:17679681-17679700 | MS.gene060578:intron | 50.0% | |
| GGACGGACAATCATCGGATT+AGG | - | chr2.2:17679909-17679928 | MS.gene060578:intron | 50.0% | |
| TGACAAGACCATAGGTGGGA+GGG | + | chr2.2:17679536-17679555 | None:intergenic | 50.0% | |
| TGATAGGTCGGAGATGTGGT+AGG | + | chr2.2:17681828-17681847 | None:intergenic | 50.0% | |
| TTGACAAGACCATAGGTGGG+AGG | + | chr2.2:17679537-17679556 | None:intergenic | 50.0% | |
| TTTAAGGGACATGCCCCTAC+TGG | - | chr2.2:17681323-17681342 | MS.gene060578:intron | 50.0% | |
| ! | GTAGGGGCATGTCCCTTAAA+AGG | + | chr2.2:17681323-17681342 | None:intergenic | 50.0% |
| ! | TGATCGACTCCTATCCACCT+TGG | - | chr2.2:17680066-17680085 | MS.gene060578:intron | 50.0% |
| ! | TGGTCTTGAAGTCCTGCAAG+CGG | + | chr2.2:17679762-17679781 | None:intergenic | 50.0% |
| AGAGCGGCTGCCAAGAACAT+TGG | - | chr2.2:17680411-17680430 | MS.gene060578:CDS | 55.0% | |
| AGGCCTCCAAACAACTCTCC+TGG | + | chr2.2:17682088-17682107 | None:intergenic | 55.0% | |
| CACGACACGTTTCCGATACC+AGG | + | chr2.2:17679940-17679959 | None:intergenic | 55.0% | |
| CAGGGAGGGATTAACTGCAG+AGG | - | chr2.2:17681085-17681104 | MS.gene060578:intron | 55.0% | |
| GACACACAAGATCCGCTTGC+AGG | - | chr2.2:17679747-17679766 | MS.gene060578:intron | 55.0% | |
| GACCCAGGAGAGTTGTTTGG+AGG | - | chr2.2:17682082-17682101 | MS.gene060578:CDS | 55.0% | |
| GGCCTCCAAACAACTCTCCT+GGG | + | chr2.2:17682087-17682106 | None:intergenic | 55.0% | |
| ! | TCATCGGATTAGGCGTGTCC+TGG | - | chr2.2:17679919-17679938 | MS.gene060578:intron | 55.0% |
| !! | CTCTGGCTTGGGAACTCTCA+AGG | - | chr2.2:17681361-17681380 | MS.gene060578:intron | 55.0% |
| AAGCAAAGGCCATGGCCCCA+TGG | - | chr2.2:17681531-17681550 | MS.gene060578:intron | 60.0% | |
| AGCAAAGGCCATGGCCCCAT+GGG | - | chr2.2:17681532-17681551 | MS.gene060578:intron | 60.0% | |
| CATGGTGGCCCTCCCACCTA+TGG | - | chr2.2:17679525-17679544 | MS.gene060578:CDS | 65.0% | |
| GAGGGCCACCATGTCTCCAC+TGG | + | chr2.2:17679518-17679537 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 17679453 | 17682159 | 17679453 | ID=MS.gene060578 |
| chr2.2 | mRNA | 17679453 | 17682159 | 17679453 | ID=MS.gene060578.t1;Parent=MS.gene060578 |
| chr2.2 | exon | 17682028 | 17682159 | 17682028 | ID=MS.gene060578.t1.exon1;Parent=MS.gene060578.t1 |
| chr2.2 | CDS | 17682028 | 17682159 | 17682028 | ID=cds.MS.gene060578.t1;Parent=MS.gene060578.t1 |
| chr2.2 | exon | 17681798 | 17681930 | 17681798 | ID=MS.gene060578.t1.exon2;Parent=MS.gene060578.t1 |
| chr2.2 | CDS | 17681798 | 17681930 | 17681798 | ID=cds.MS.gene060578.t1;Parent=MS.gene060578.t1 |
| chr2.2 | exon | 17680230 | 17680528 | 17680230 | ID=MS.gene060578.t1.exon3;Parent=MS.gene060578.t1 |
| chr2.2 | CDS | 17680230 | 17680528 | 17680230 | ID=cds.MS.gene060578.t1;Parent=MS.gene060578.t1 |
| chr2.2 | exon | 17679453 | 17679572 | 17679453 | ID=MS.gene060578.t1.exon4;Parent=MS.gene060578.t1 |
| chr2.2 | CDS | 17679453 | 17679572 | 17679453 | ID=cds.MS.gene060578.t1;Parent=MS.gene060578.t1 |
| Gene Sequence |
| Protein sequence |
