AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08579.t1 MTR_4g461080 95.062 162 8 0 13 174 1 162 4.14e-103 299
MS.gene08579.t1 MTR_4g461080 97.561 41 1 0 167 207 237 277 6.71e-22 90.9
MS.gene08579.t1 MTR_2g093220 68.553 159 38 6 19 168 18 173 1.55e-60 191
MS.gene08579.t1 MTR_3g077750 52.027 148 47 5 2 141 28 159 1.47e-35 128
MS.gene08579.t1 MTR_3g091820 65.556 90 29 1 8 97 12 99 2.08e-34 124
MS.gene08579.t1 MTR_1g077600 56.701 97 38 1 3 95 1 97 3.39e-34 122
MS.gene08579.t1 MTR_1g077600 56.701 97 38 1 3 95 1 97 3.68e-34 123
MS.gene08579.t1 MTR_4g063780 66.304 92 26 2 25 111 58 149 7.29e-34 123
MS.gene08579.t1 MTR_8g015840 70.270 74 22 0 29 102 8 81 1.41e-32 117
MS.gene08579.t1 MTR_2g096740 60.000 85 34 0 12 96 33 117 3.03e-32 118
MS.gene08579.t1 MTR_3g090430 64.706 85 30 0 15 99 25 109 3.27e-32 119
MS.gene08579.t1 MTR_2g096740 60.000 85 34 0 12 96 48 132 3.92e-32 118
MS.gene08579.t1 MTR_4g022370 66.250 80 26 1 17 95 57 136 4.58e-32 119
MS.gene08579.t1 MTR_8g027295 66.234 77 24 1 23 99 8 82 1.00e-31 116
MS.gene08579.t1 MTR_4g088580 59.596 99 30 2 42 130 56 154 1.10e-31 119
MS.gene08579.t1 MTR_1g056810 64.368 87 27 2 43 125 14 100 2.80e-31 115
MS.gene08579.t1 MTR_7g059400 68.831 77 23 1 20 95 54 130 3.53e-31 116
MS.gene08579.t1 MTR_2g014060 85.965 57 6 1 36 92 22 76 7.21e-31 115
MS.gene08579.t1 MTR_8g479350 82.143 56 10 0 39 94 66 121 7.40e-31 115
MS.gene08579.t1 MTR_8g068210 62.338 77 29 0 37 113 28 104 9.69e-31 115
MS.gene08579.t1 MTR_7g024670 72.857 70 18 1 40 108 76 145 1.22e-29 113
MS.gene08579.t1 MTR_4g109980 86.792 53 7 0 39 91 38 90 1.29e-29 112
MS.gene08579.t1 MTR_8g079060 70.588 68 18 1 32 97 18 85 1.89e-29 109
MS.gene08579.t1 MTR_5g031440 80.702 57 10 1 35 91 38 93 2.06e-29 112
MS.gene08579.t1 MTR_2g014170 90.000 50 5 0 40 89 44 93 2.45e-28 108
MS.gene08579.t1 MTR_2g013370 60.465 86 31 2 10 95 17 99 6.52e-28 106
MS.gene08579.t1 MTR_2g059540 88.000 50 6 0 40 89 30 79 1.18e-27 104
MS.gene08579.t1 MTR_4g089095 80.702 57 10 1 39 95 48 103 3.03e-27 105
MS.gene08579.t1 MTR_4g089095 80.702 57 10 1 39 95 14 69 3.24e-27 104
MS.gene08579.t1 MTR_3g435480 66.197 71 23 1 29 99 125 194 2.41e-26 105
MS.gene08579.t1 MTR_7g010950 67.143 70 22 1 29 98 124 192 2.86e-26 105
MS.gene08579.t1 MTR_6g027460 51.042 96 45 2 4 98 59 153 5.36e-26 103
MS.gene08579.t1 MTR_5g041420 59.740 77 30 1 29 105 127 202 1.14e-25 101
MS.gene08579.t1 MTR_6g027450 46.809 94 49 1 5 98 54 146 1.35e-25 101
MS.gene08579.t1 MTR_6g012450 52.174 92 43 1 7 98 103 193 7.61e-25 101
MS.gene08579.t1 MTR_7g086780 59.722 72 28 1 27 98 86 156 1.82e-24 99.8
MS.gene08579.t1 MTR_4g082060 54.321 81 33 1 19 99 104 180 2.61e-24 99.8
MS.gene08579.t1 MTR_8g044220 47.059 102 40 3 29 128 107 196 6.83e-24 98.2
MS.gene08579.t1 MTR_2g016030 67.857 56 18 0 39 94 45 100 2.57e-23 91.7
MS.gene08579.t1 MTR_5g041380 59.211 76 27 1 25 100 115 186 1.83e-22 93.6
MS.gene08579.t1 MTR_5g041400 59.211 76 27 1 25 100 107 178 2.91e-22 93.2
MS.gene08579.t1 MTR_5g041530 58.571 70 28 1 25 94 125 193 2.44e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08579.t1 AT2G28510 39.860 286 83 11 10 207 4 288 8.06e-45 150
MS.gene08579.t1 AT5G60200 45.263 190 71 6 25 182 40 228 1.63e-42 144
MS.gene08579.t1 AT3G45610 50.314 159 64 5 3 149 1 156 2.92e-39 135
MS.gene08579.t1 AT1G51700 63.158 95 31 2 21 114 16 107 2.55e-35 123
MS.gene08579.t1 AT3G55370 71.429 77 21 1 25 100 104 180 1.89e-33 123
MS.gene08579.t1 AT3G55370 71.429 77 21 1 25 100 59 135 2.54e-33 122
MS.gene08579.t1 AT3G55370 71.429 77 21 1 25 100 59 135 3.39e-33 122
MS.gene08579.t1 AT5G02460 73.611 72 18 1 25 95 78 149 1.68e-32 121
MS.gene08579.t1 AT1G21340 65.116 86 18 1 40 113 37 122 4.78e-32 117
MS.gene08579.t1 AT4G24060 72.727 66 18 0 30 95 42 107 4.80e-32 119
MS.gene08579.t1 AT1G07640 65.823 79 26 1 18 95 53 131 5.40e-32 118
MS.gene08579.t1 AT1G07640 65.823 79 26 1 18 95 61 139 7.45e-32 118
MS.gene08579.t1 AT3G52440 59.574 94 33 1 43 136 27 115 8.68e-32 116
MS.gene08579.t1 AT5G60850 72.000 75 19 1 39 111 49 123 9.11e-32 117
MS.gene08579.t1 AT3G61850 52.066 121 52 3 27 147 49 163 1.10e-31 116
MS.gene08579.t1 AT3G61850 52.066 121 52 3 27 147 49 163 1.10e-31 116
MS.gene08579.t1 AT3G52440 59.574 94 33 1 43 136 46 134 1.18e-31 116
MS.gene08579.t1 AT3G61850 52.066 121 52 3 27 147 61 175 1.21e-31 117
MS.gene08579.t1 AT2G37590 67.123 73 23 1 25 96 72 144 1.24e-31 117
MS.gene08579.t1 AT3G61850 52.066 121 52 3 27 147 49 163 1.39e-31 117
MS.gene08579.t1 AT3G61850 52.066 121 52 3 27 147 61 175 1.67e-31 117
MS.gene08579.t1 AT1G07640 69.444 72 21 1 25 95 4 75 2.23e-31 115
MS.gene08579.t1 AT2G28810 69.565 69 20 1 24 92 61 128 2.84e-31 116
MS.gene08579.t1 AT2G28810 69.565 69 20 1 24 92 78 145 5.00e-31 116
MS.gene08579.t1 AT5G62940 77.049 61 14 0 31 91 63 123 9.42e-31 116
MS.gene08579.t1 AT5G65590 80.328 61 12 0 41 101 41 101 1.14e-30 114
MS.gene08579.t1 AT1G28310 87.273 55 7 0 41 95 27 81 3.35e-30 113
MS.gene08579.t1 AT1G28310 58.947 95 39 0 1 95 11 105 4.73e-30 113
MS.gene08579.t1 AT3G21270 90.566 53 5 0 41 93 29 81 1.40e-29 109
MS.gene08579.t1 AT4G38000 72.727 66 17 1 30 94 30 95 3.73e-29 109
MS.gene08579.t1 AT4G21050 63.158 76 28 0 38 113 21 96 5.54e-29 107
MS.gene08579.t1 AT3G50410 72.308 65 18 0 33 97 22 86 8.67e-29 108
MS.gene08579.t1 AT5G66940 61.905 84 25 2 37 113 28 111 1.94e-28 106
MS.gene08579.t1 AT4G00940 80.702 57 11 0 39 95 66 122 2.10e-28 108
MS.gene08579.t1 AT4G00940 80.702 57 11 0 39 95 66 122 2.10e-28 108
MS.gene08579.t1 AT4G00940 80.702 57 11 0 39 95 66 122 2.10e-28 108
MS.gene08579.t1 AT1G64620 72.131 61 17 0 30 90 38 98 5.97e-28 108
MS.gene08579.t1 AT2G46590 63.158 76 24 1 13 88 44 115 9.41e-28 107
MS.gene08579.t1 AT2G46590 63.158 76 24 1 13 88 56 127 1.21e-27 107
MS.gene08579.t1 AT1G47655 75.439 57 14 0 33 89 21 77 1.96e-26 101
MS.gene08579.t1 AT5G62430 47.959 98 45 2 3 100 22 113 3.37e-26 102
MS.gene08579.t1 AT3G47500 52.632 95 41 1 4 98 77 167 5.82e-26 104
MS.gene08579.t1 AT5G39660 61.333 75 25 1 24 98 125 195 7.16e-25 101
MS.gene08579.t1 AT5G39660 61.333 75 25 1 24 98 125 195 7.16e-25 101
MS.gene08579.t1 AT5G39660 61.333 75 25 1 24 98 125 195 7.16e-25 101
MS.gene08579.t1 AT1G69570 53.488 86 36 1 9 94 104 185 1.38e-24 99.8
MS.gene08579.t1 AT4G21080 56.579 76 24 1 43 109 27 102 1.97e-24 97.1
MS.gene08579.t1 AT1G26790 55.263 76 33 1 20 94 89 164 5.46e-24 97.8
MS.gene08579.t1 AT4G21040 60.274 73 29 0 22 94 6 78 8.46e-24 94.7
MS.gene08579.t1 AT2G34140 66.071 56 19 0 39 94 56 111 4.04e-23 91.7
MS.gene08579.t1 AT1G29160 66.071 56 19 0 39 94 60 115 8.55e-23 90.9
MS.gene08579.t1 AT4G21030 51.471 68 33 0 38 105 18 85 1.64e-15 72.0

Find 57 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTTTGGTTTCCTAAAA+TGG 0.139828 4.1:-38283203 None:intergenic
GGGAAACAAGTGAGTGGATT+TGG 0.231178 4.1:-38283091 None:intergenic
GCTTCTGGTTGAGGAGGTTT+TGG 0.248273 4.1:-38282851 None:intergenic
GCAAGTCTTGTAGGAGATAT+TGG 0.255429 4.1:+38282957 MS.gene08579:CDS
GAATGGTCTCACTTCATCTT+GGG 0.274434 4.1:+38283570 MS.gene08579:CDS
GATATTTCTGCAAGTCTTGT+AGG 0.294030 4.1:+38282948 MS.gene08579:CDS
GGAATGGTCTCACTTCATCT+TGG 0.324184 4.1:+38283569 MS.gene08579:CDS
ATTGTTGTAGTAACAAAATT+TGG 0.325870 4.1:-38282906 None:intergenic
TTTCCATGGCAGTTCAATAA+TGG 0.330980 4.1:+38283502 MS.gene08579:CDS
GGAAACAAGTGAGTGGATTT+GGG 0.349121 4.1:-38283090 None:intergenic
ACGAGACGGTGTCTACATTA+GGG 0.358019 4.1:-38283614 None:intergenic
AGACACAAATATGGCTGAAA+TGG 0.367887 4.1:+38283525 MS.gene08579:CDS
CACGAGACGGTGTCTACATT+AGG 0.377042 4.1:-38283615 None:intergenic
CAATAATGGAGACACAAATA+TGG 0.378026 4.1:+38283516 MS.gene08579:CDS
CAAGACTTGCAGAAATATCT+TGG 0.387546 4.1:-38282944 None:intergenic
AGGAATGTTCCTGTTGGTGG+GGG 0.412807 4.1:+38282998 MS.gene08579:CDS
TTCTTCTAGTGGACAACAAC+AGG 0.413714 4.1:+38282068 MS.gene08579:CDS
TGTGAGATCATTGGAATCAT+AGG 0.425382 4.1:-38283122 None:intergenic
GGATTTGGGTTGGTTTGAAA+TGG 0.429582 4.1:-38283076 None:intergenic
ATGGCTGAAATGGATCATTC+AGG 0.430922 4.1:+38283535 MS.gene08579:CDS
TACCACATGAGGTGTTGGTT+TGG 0.441239 4.1:-38283216 None:intergenic
AGCATTAGCTAGGCTTCAAA+AGG 0.442460 4.1:+38283147 MS.gene08579:CDS
GCAAATGTCTAACCAGTCAT+TGG 0.467897 4.1:+38282787 MS.gene08579:intron
TGTGGTATTCTTAACAATCA+TGG 0.480447 4.1:+38283232 MS.gene08579:CDS
AAGAAGTGTTTGTATGGGGA+TGG 0.488483 4.1:+38282044 None:intergenic
AGGCTTCAAAAGGGTCAACT+TGG 0.489311 4.1:+38283157 MS.gene08579:CDS
ACAAGTGAGTGGATTTGGGT+TGG 0.491105 4.1:-38283086 None:intergenic
TAAGGAATGTTCCTGTTGGT+GGG 0.496140 4.1:+38282996 MS.gene08579:CDS
AATGGTCTCACTTCATCTTG+GGG 0.497543 4.1:+38283571 MS.gene08579:CDS
TGTAGGAGATATTGGACTAA+AGG 0.499003 4.1:+38282965 MS.gene08579:CDS
GTGTTGTTTGAGTCACATCT+TGG 0.500769 4.1:-38282884 None:intergenic
TAATGCTAGTGTGAGATCAT+TGG 0.503293 4.1:-38283131 None:intergenic
TTGGAATCATAGGACATTGA+AGG 0.508739 4.1:-38283112 None:intergenic
CTAAGGAATGTTCCTGTTGG+TGG 0.517333 4.1:+38282995 MS.gene08579:CDS
AAGAATACCACATGAGGTGT+TGG 0.521494 4.1:-38283221 None:intergenic
TCAGGAAGAGCTGGTTGGAA+TGG 0.524954 4.1:+38283553 MS.gene08579:CDS
ATGGATCATTCAGGAAGAGC+TGG 0.535910 4.1:+38283544 MS.gene08579:CDS
ATGGGGATGGATTCTTCTAG+TGG 0.553754 4.1:+38282057 MS.gene08579:CDS
TTTAGAGCTTCTGGTTGAGG+AGG 0.557206 4.1:-38282857 None:intergenic
AAGGAATGTTCCTGTTGGTG+GGG 0.558824 4.1:+38282997 MS.gene08579:CDS
TTAACATGCTCTCCAATGAC+TGG 0.564124 4.1:-38282799 None:intergenic
GGACTAAAGGTGGTACACTA+AGG 0.568077 4.1:+38282978 MS.gene08579:CDS
CGAGACGGTGTCTACATTAG+GGG 0.579103 4.1:-38283613 None:intergenic
TGGAATCATAGGACATTGAA+GGG 0.583945 4.1:-38283111 None:intergenic
GGAATGTTCCTGTTGGTGGG+GGG 0.588003 4.1:+38282999 MS.gene08579:CDS
ATCTCACACTAGCATTAGCT+AGG 0.588061 4.1:+38283137 MS.gene08579:CDS
CATCATCAGCTTCATCAAAG+AGG 0.595811 4.1:+38283041 MS.gene08579:CDS
ATCATTCAGGAAGAGCTGGT+TGG 0.602600 4.1:+38283548 MS.gene08579:CDS
AACCAAACCAACACCTCATG+TGG 0.607094 4.1:+38283214 MS.gene08579:CDS
ATGGTCTCACTTCATCTTGG+GGG 0.616298 4.1:+38283572 MS.gene08579:CDS
TCTCCATTATTGAACTGCCA+TGG 0.629912 4.1:-38283505 None:intergenic
GCATTAGCTAGGCTTCAAAA+GGG 0.630153 4.1:+38283148 MS.gene08579:CDS
GAGACGGTGTCTACATTAGG+GGG 0.640287 4.1:-38283612 None:intergenic
ATTGTTAAGAATACCACATG+AGG 0.643870 4.1:-38283227 None:intergenic
AGGAGATATTGGACTAAAGG+TGG 0.646558 4.1:+38282968 MS.gene08579:CDS
ACACTAAGGAATGTTCCTGT+TGG 0.660187 4.1:+38282992 MS.gene08579:CDS
ATTGAAGGGAAACAAGTGAG+TGG 0.662440 4.1:-38283097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAATAAAATTGTAGA+GGG - chr4.1:38282306-38282325 None:intergenic 15.0%
!! CAAAAATTAAGGAAAATAAT+AGG - chr4.1:38282232-38282251 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG + chr4.1:38282550-38282569 MS.gene08579:intron 15.0%
!! TATACATAATAAAATTGTAG+AGG - chr4.1:38282307-38282326 None:intergenic 15.0%
!! ATTGTTGTAGTAACAAAATT+TGG - chr4.1:38282909-38282928 None:intergenic 20.0%
!! CAAAGAAGAAACAAAAATTA+AGG - chr4.1:38282243-38282262 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG + chr4.1:38282725-38282744 MS.gene08579:intron 20.0%
!! TCATGTAATATTTATTAACG+TGG + chr4.1:38282134-38282153 MS.gene08579:intron 20.0%
!! TTCCATCAAATATTAATTCT+AGG - chr4.1:38282380-38282399 None:intergenic 20.0%
!!! ACTAATTTTATTTCATCCAA+GGG - chr4.1:38282273-38282292 None:intergenic 20.0%
!!! TACTAATTTTATTTCATCCA+AGG - chr4.1:38282274-38282293 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG - chr4.1:38282457-38282476 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG - chr4.1:38282458-38282477 None:intergenic 20.0%
! AACAAGAAATGTGTAATGTT+AGG + chr4.1:38283449-38283468 MS.gene08579:intron 25.0%
! ACAAGAAATGTGTAATGTTA+GGG + chr4.1:38283450-38283469 MS.gene08579:intron 25.0%
! ATATTTGATGGAATAAAGTC+AGG + chr4.1:38282387-38282406 MS.gene08579:intron 25.0%
! GTAGTACTAAAAATTCATGA+AGG - chr4.1:38282189-38282208 None:intergenic 25.0%
! TAGGGAACAAAATGAAAATA+GGG + chr4.1:38283468-38283487 MS.gene08579:intron 25.0%
! TATTTGATGGAATAAAGTCA+GGG + chr4.1:38282388-38282407 MS.gene08579:intron 25.0%
! TGTATATACTATACTACTCA+TGG + chr4.1:38282321-38282340 MS.gene08579:intron 25.0%
! TTAGGGAACAAAATGAAAAT+AGG + chr4.1:38283467-38283486 MS.gene08579:intron 25.0%
!! GAACATGATTTTTCCATTTT+AGG + chr4.1:38283190-38283209 MS.gene08579:CDS 25.0%
!! TATTAATGGATGTACATGTT+GGG + chr4.1:38282494-38282513 MS.gene08579:intron 25.0%
!! TTACTTTATTTGATCTAGAG+GGG - chr4.1:38282456-38282475 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG + chr4.1:38282493-38282512 MS.gene08579:intron 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG + chr4.1:38283478-38283497 MS.gene08579:intron 25.0%
!!! CATGAATTTTTAGTACTACT+TGG + chr4.1:38282190-38282209 MS.gene08579:intron 25.0%
AAATTCATGAAGGACAAAGA+TGG - chr4.1:38282179-38282198 None:intergenic 30.0%
ACACAACACAACAAATTTAG+TGG - chr4.1:38282760-38282779 None:intergenic 30.0%
ATGAACCATATGTATATAGC+TGG + chr4.1:38282352-38282371 MS.gene08579:intron 30.0%
ATGCTCATTTCATGATCATA+AGG - chr4.1:38283394-38283413 None:intergenic 30.0%
ATTGTTAAGAATACCACATG+AGG - chr4.1:38283230-38283249 None:intergenic 30.0%
GAATCAGAAAAGTTACATTG+TGG + chr4.1:38282584-38282603 MS.gene08579:intron 30.0%
GCTATATACATATGGTTCAT+AGG - chr4.1:38282352-38282371 None:intergenic 30.0%
GGCCTAGAATTAATATTTGA+TGG + chr4.1:38282375-38282394 MS.gene08579:intron 30.0%
TGAACCATATGTATATAGCT+GGG + chr4.1:38282353-38282372 MS.gene08579:intron 30.0%
TGTGGTATTCTTAACAATCA+TGG + chr4.1:38283232-38283251 MS.gene08579:CDS 30.0%
! CAATAATGGAGACACAAATA+TGG + chr4.1:38283516-38283535 MS.gene08579:CDS 30.0%
AATGCTAATGGCAATGGTAA+TGG + chr4.1:38283355-38283374 MS.gene08579:intron 35.0%
ACTACTTGGAAGAATGAACA+AGG + chr4.1:38282204-38282223 MS.gene08579:intron 35.0%
AGACACAAATATGGCTGAAA+TGG + chr4.1:38283525-38283544 MS.gene08579:CDS 35.0%
CAAGACTTGCAGAAATATCT+TGG - chr4.1:38282947-38282966 None:intergenic 35.0%
GAACCATATGTATATAGCTG+GGG + chr4.1:38282354-38282373 MS.gene08579:intron 35.0%
GTGCAGAATCTTTACTACAT+GGG + chr4.1:38283316-38283335 MS.gene08579:intron 35.0%
TAATGCTAGTGTGAGATCAT+TGG - chr4.1:38283134-38283153 None:intergenic 35.0%
TGCAGAATCTTTACTACATG+GGG + chr4.1:38283317-38283336 MS.gene08579:intron 35.0%
TGGAATCATAGGACATTGAA+GGG - chr4.1:38283114-38283133 None:intergenic 35.0%
TGTAGGAGATATTGGACTAA+AGG + chr4.1:38282965-38282984 MS.gene08579:CDS 35.0%
TGTGAGATCATTGGAATCAT+AGG - chr4.1:38283125-38283144 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG + chr4.1:38283315-38283334 MS.gene08579:intron 35.0%
TTAGCATCTTCATCTTTGTG+AGG + chr4.1:38282430-38282449 MS.gene08579:intron 35.0%
TTGGAATCATAGGACATTGA+AGG - chr4.1:38283115-38283134 None:intergenic 35.0%
TTTCCATGGCAGTTCAATAA+TGG + chr4.1:38283502-38283521 MS.gene08579:CDS 35.0%
! GATATTTCTGCAAGTCTTGT+AGG + chr4.1:38282948-38282967 MS.gene08579:CDS 35.0%
!! GTTGATAATGGCAATGCTAA+TGG + chr4.1:38283343-38283362 MS.gene08579:intron 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG - chr4.1:38283206-38283225 None:intergenic 35.0%
AACCATTCCTCAAACAACCA+TGG + chr4.1:38283259-38283278 MS.gene08579:intron 40.0%
AAGAATACCACATGAGGTGT+TGG - chr4.1:38283224-38283243 None:intergenic 40.0%
AATGGCAATGCTAATGGCAA+TGG + chr4.1:38283349-38283368 MS.gene08579:intron 40.0%
AATGGTCTCACTTCATCTTG+GGG + chr4.1:38283571-38283590 MS.gene08579:CDS 40.0%
ACACTAAGGAATGTTCCTGT+TGG + chr4.1:38282992-38283011 MS.gene08579:CDS 40.0%
AGCATTAGCTAGGCTTCAAA+AGG + chr4.1:38283147-38283166 MS.gene08579:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG + chr4.1:38282968-38282987 MS.gene08579:CDS 40.0%
ATCCATGGTTGTTTGAGGAA+TGG - chr4.1:38283264-38283283 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG + chr4.1:38283137-38283156 MS.gene08579:CDS 40.0%
ATGGCTGAAATGGATCATTC+AGG + chr4.1:38283535-38283554 MS.gene08579:CDS 40.0%
ATTGAAGGGAAACAAGTGAG+TGG - chr4.1:38283100-38283119 None:intergenic 40.0%
CATCATCAGCTTCATCAAAG+AGG + chr4.1:38283041-38283060 MS.gene08579:CDS 40.0%
GAAGAATCCATGGTTGTTTG+AGG - chr4.1:38283269-38283288 None:intergenic 40.0%
GAATGGTCTCACTTCATCTT+GGG + chr4.1:38283570-38283589 MS.gene08579:CDS 40.0%
GCAAATGTCTAACCAGTCAT+TGG + chr4.1:38282787-38282806 MS.gene08579:intron 40.0%
GCAGAATCTTTACTACATGG+GGG + chr4.1:38283318-38283337 MS.gene08579:intron 40.0%
GCATTAGCTAGGCTTCAAAA+GGG + chr4.1:38283148-38283167 MS.gene08579:CDS 40.0%
TAAGGAATGTTCCTGTTGGT+GGG + chr4.1:38282996-38283015 MS.gene08579:CDS 40.0%
TAAGTGCTTCGAAGAATCCA+TGG - chr4.1:38283279-38283298 None:intergenic 40.0%
TCATGAAGGACAAAGATGGA+AGG - chr4.1:38282175-38282194 None:intergenic 40.0%
TCTCCATTATTGAACTGCCA+TGG - chr4.1:38283508-38283527 None:intergenic 40.0%
TTAACATGCTCTCCAATGAC+TGG - chr4.1:38282802-38282821 None:intergenic 40.0%
TTGATGGAATAAAGTCAGGG+AGG + chr4.1:38282391-38282410 MS.gene08579:intron 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG + chr4.1:38282957-38282976 MS.gene08579:CDS 40.0%
! GGAAACAAGTGAGTGGATTT+GGG - chr4.1:38283093-38283112 None:intergenic 40.0%
! GGATTCTTCGAAGCACTTAT+GGG + chr4.1:38283280-38283299 MS.gene08579:intron 40.0%
! TCTTCTTTGAAGAACACCCT+TGG + chr4.1:38282254-38282273 MS.gene08579:intron 40.0%
! TGGATTCTTCGAAGCACTTA+TGG + chr4.1:38283279-38283298 MS.gene08579:intron 40.0%
! TTCTTCTAGTGGACAACAAC+AGG + chr4.1:38282068-38282087 MS.gene08579:CDS 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG - chr4.1:38283079-38283098 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG - chr4.1:38282887-38282906 None:intergenic 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG - chr4.1:38282863-38282882 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG - chr4.1:38282869-38282888 None:intergenic 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG + chr4.1:38283488-38283507 MS.gene08579:intron 40.0%
AACCAAACCAACACCTCATG+TGG + chr4.1:38283214-38283233 MS.gene08579:CDS 45.0%
AAGGAATGTTCCTGTTGGTG+GGG + chr4.1:38282997-38283016 MS.gene08579:CDS 45.0%
ACATTAGGGGGCTATTGAGA+AGG - chr4.1:38283603-38283622 None:intergenic 45.0%
AGGCCCCAGCTATATACATA+TGG - chr4.1:38282360-38282379 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG + chr4.1:38283157-38283176 MS.gene08579:CDS 45.0%
ATCATTCAGGAAGAGCTGGT+TGG + chr4.1:38283548-38283567 MS.gene08579:CDS 45.0%
ATGGATCATTCAGGAAGAGC+TGG + chr4.1:38283544-38283563 MS.gene08579:CDS 45.0%
ATGGTCTCACTTCATCTTGG+GGG + chr4.1:38283572-38283591 MS.gene08579:CDS 45.0%
CTAAGGAATGTTCCTGTTGG+TGG + chr4.1:38282995-38283014 MS.gene08579:CDS 45.0%
GAATCTTTACTACATGGGGG+AGG + chr4.1:38283321-38283340 MS.gene08579:intron 45.0%
GGAATGGTCTCACTTCATCT+TGG + chr4.1:38283569-38283588 MS.gene08579:CDS 45.0%
GGACTAAAGGTGGTACACTA+AGG + chr4.1:38282978-38282997 MS.gene08579:CDS 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG - chr4.1:38283089-38283108 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG + chr4.1:38282057-38282076 MS.gene08579:CDS 45.0%
! GGGAAACAAGTGAGTGGATT+TGG - chr4.1:38283094-38283113 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG - chr4.1:38282860-38282879 None:intergenic 45.0%
!! TACATGGGGGAGGTTGATAA+TGG + chr4.1:38283331-38283350 MS.gene08579:intron 45.0%
!! TACCACATGAGGTGTTGGTT+TGG - chr4.1:38283219-38283238 None:intergenic 45.0%
!! AAAAATTGAAAATTTATTAA+TGG + chr4.1:38282480-38282499 MS.gene08579:intron 5.0%
TCAGGAAGAGCTGGTTGGAA+TGG + chr4.1:38283553-38283572 MS.gene08579:CDS 50.0%
! AGGAATGTTCCTGTTGGTGG+GGG + chr4.1:38282998-38283017 MS.gene08579:CDS 50.0%
!! GCTTCTGGTTGAGGAGGTTT+TGG - chr4.1:38282854-38282873 None:intergenic 50.0%
CTCACTTCATCTTGGGGGCA+TGG + chr4.1:38283577-38283596 MS.gene08579:CDS 55.0%
TTTCTACACCCCCCACCAAC+AGG - chr4.1:38283010-38283029 None:intergenic 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG + chr4.1:38282999-38283018 MS.gene08579:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 38282057 38283624 38282057 ID=MS.gene08579
chr4.1 mRNA 38282057 38283624 38282057 ID=MS.gene08579.t1;Parent=MS.gene08579
chr4.1 exon 38282057 38282089 38282057 ID=MS.gene08579.t1.exon1;Parent=MS.gene08579.t1
chr4.1 CDS 38282057 38282089 38282057 ID=cds.MS.gene08579.t1;Parent=MS.gene08579.t1
chr4.1 exon 38282788 38283253 38282788 ID=MS.gene08579.t1.exon2;Parent=MS.gene08579.t1
chr4.1 CDS 38282788 38283253 38282788 ID=cds.MS.gene08579.t1;Parent=MS.gene08579.t1
chr4.1 exon 38283500 38283624 38283500 ID=MS.gene08579.t1.exon3;Parent=MS.gene08579.t1
chr4.1 CDS 38283500 38283624 38283500 ID=cds.MS.gene08579.t1;Parent=MS.gene08579.t1
Gene Sequence

>MS.gene08579

ATGGGGATGGATTCTTCTAGTGGACAACAACAGGTGAAATATTTATTTCATATCATATATAATTATCATGCATGTAGTCATGTAATATTTATTAACGTGGCTTCTTTGATTTTTGCCTTCCATCTTTGTCCTTCATGAATTTTTAGTACTACTTGGAAGAATGAACAAGGAACCTATTATTTTCCTTAATTTTTGTTTCTTCTTTGAAGAACACCCTTGGATGAAATAAAATTAGTAAAGTTATTTCCCTCTACAATTTTATTATGTATATACTATACTACTCATGGTGTTTCCTATGAACCATATGTATATAGCTGGGGCCTAGAATTAATATTTGATGGAATAAAGTCAGGGAGGATAGAAAGAAAAAAAATTAGCATCTTCATCTTTGTGAGGCCCCTCTAGATCAAATAAAGTAAAAAGAAAAATTGAAAATTTATTAATGGATGTACATGTTGGGAGTGAGTGATTTATTCAGTTTCGTTTTAGTTCTTAACATTATGTTTGAATTAACGGTGAATTTGTCAGAATCAGAAAAGTTACATTGTGGAGTTTCAATAATACTAAGACGACACACAATTTTGTCAAATTCGCAATGATTTCAAAAATCAATTAACTCTTTGATTTTTTACTTGTGTACACATATGTATGTACTATGTATAGATAGATCACAAAAATTTGTACTATTTGGTTTTCATGTCCACTAAATTTGTTGTGTTGTGTTGTTGCAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGCAGAACAAGACAAAAAGCCAAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTAAGGAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAGCTTCATCAAAGAGGTCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCAATGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGTATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCATGGATTCTTCGAAGCACTTATGGGATCTCAAAACAATGTGCAGAATCTTTACTACATGGGGGAGGTTGATAATGGCAATGCTAATGGCAATGGTAATGGTGAGATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGACACAAATATGGCTGAAATGGATCATTCAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTCAATAGCCCCCTAATGTAG
Protein sequence

>MS.gene08579.t1

MGMDSSSGQQQQMSNQSLESMLTCSKAEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSMSYDSNDLTLALARLQKGQLGFDHEHDFSILGNQTNTSCGILNNHGFPWQFNNGDTNMAEMDHSGRAGWNGLTSSWGHGLLNSPLM