AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049856

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049856.t1 MTR_4g461080 95.062 162 8 0 13 174 1 162 4.52e-103 298
MS.gene049856.t1 MTR_4g461080 100.000 41 0 0 167 207 237 277 8.34e-23 93.2
MS.gene049856.t1 MTR_2g093220 68.553 159 38 6 19 168 18 173 1.72e-60 191
MS.gene049856.t1 MTR_3g077750 52.027 148 47 5 2 141 28 159 1.66e-35 127
MS.gene049856.t1 MTR_3g091820 65.556 90 29 1 8 97 12 99 1.95e-34 124
MS.gene049856.t1 MTR_1g077600 56.701 97 38 1 3 95 1 97 3.42e-34 122
MS.gene049856.t1 MTR_1g077600 56.701 97 38 1 3 95 1 97 3.80e-34 123
MS.gene049856.t1 MTR_4g063780 66.304 92 26 2 25 111 58 149 7.45e-34 123
MS.gene049856.t1 MTR_8g015840 70.270 74 22 0 29 102 8 81 1.57e-32 117
MS.gene049856.t1 MTR_2g096740 60.000 85 34 0 12 96 33 117 2.94e-32 118
MS.gene049856.t1 MTR_3g090430 64.706 85 30 0 15 99 25 109 3.31e-32 119
MS.gene049856.t1 MTR_2g096740 60.000 85 34 0 12 96 48 132 4.09e-32 118
MS.gene049856.t1 MTR_4g022370 66.250 80 26 1 17 95 57 136 4.58e-32 119
MS.gene049856.t1 MTR_4g088580 59.596 99 30 2 42 130 56 154 9.79e-32 119
MS.gene049856.t1 MTR_8g027295 66.234 77 24 1 23 99 8 82 1.10e-31 116
MS.gene049856.t1 MTR_1g056810 64.368 87 27 2 43 125 14 100 2.86e-31 115
MS.gene049856.t1 MTR_7g059400 68.831 77 23 1 20 95 54 130 3.75e-31 116
MS.gene049856.t1 MTR_2g014060 85.965 57 6 1 36 92 22 76 8.17e-31 115
MS.gene049856.t1 MTR_8g479350 52.294 109 37 3 39 147 66 159 8.48e-31 115
MS.gene049856.t1 MTR_8g068210 58.333 84 35 0 30 113 21 104 1.03e-30 115
MS.gene049856.t1 MTR_7g024670 72.857 70 18 1 40 108 76 145 1.30e-29 113
MS.gene049856.t1 MTR_4g109980 86.792 53 7 0 39 91 38 90 1.47e-29 112
MS.gene049856.t1 MTR_8g079060 70.588 68 18 1 32 97 18 85 1.91e-29 109
MS.gene049856.t1 MTR_5g031440 80.702 57 10 1 35 91 38 93 2.06e-29 112
MS.gene049856.t1 MTR_2g014170 90.000 50 5 0 40 89 44 93 2.42e-28 108
MS.gene049856.t1 MTR_2g013370 60.465 86 31 2 10 95 17 99 7.32e-28 106
MS.gene049856.t1 MTR_2g059540 88.000 50 6 0 40 89 30 79 1.27e-27 103
MS.gene049856.t1 MTR_4g089095 80.702 57 10 1 39 95 48 103 3.06e-27 105
MS.gene049856.t1 MTR_4g089095 80.702 57 10 1 39 95 14 69 3.24e-27 104
MS.gene049856.t1 MTR_3g435480 66.197 71 23 1 29 99 125 194 2.53e-26 105
MS.gene049856.t1 MTR_7g010950 67.143 70 22 1 29 98 124 192 3.29e-26 105
MS.gene049856.t1 MTR_6g027460 51.042 96 45 2 4 98 59 153 5.53e-26 103
MS.gene049856.t1 MTR_5g041420 59.740 77 30 1 29 105 127 202 1.28e-25 101
MS.gene049856.t1 MTR_6g027450 46.809 94 49 1 5 98 54 146 1.36e-25 101
MS.gene049856.t1 MTR_6g012450 52.174 92 43 1 7 98 103 193 8.16e-25 101
MS.gene049856.t1 MTR_7g086780 59.722 72 28 1 27 98 86 156 2.03e-24 99.8
MS.gene049856.t1 MTR_4g082060 54.321 81 33 1 19 99 104 180 2.61e-24 99.8
MS.gene049856.t1 MTR_8g044220 47.059 102 40 3 29 128 107 196 7.77e-24 98.2
MS.gene049856.t1 MTR_2g016030 67.857 56 18 0 39 94 45 100 2.99e-23 91.7
MS.gene049856.t1 MTR_5g041380 59.211 76 27 1 25 100 115 186 2.04e-22 93.6
MS.gene049856.t1 MTR_5g041400 59.211 76 27 1 25 100 107 178 3.19e-22 92.8
MS.gene049856.t1 MTR_5g041530 58.571 70 28 1 25 94 125 193 2.52e-21 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049856.t1 AT2G28510 51.977 177 56 7 10 157 4 180 6.25e-43 145
MS.gene049856.t1 AT5G60200 45.263 190 71 6 25 182 40 228 1.63e-42 144
MS.gene049856.t1 AT3G45610 50.314 159 64 5 3 149 1 156 3.35e-39 135
MS.gene049856.t1 AT1G51700 63.158 95 31 2 21 114 16 107 2.58e-35 123
MS.gene049856.t1 AT3G55370 71.429 77 21 1 25 100 104 180 2.07e-33 123
MS.gene049856.t1 AT3G55370 71.429 77 21 1 25 100 59 135 2.71e-33 122
MS.gene049856.t1 AT3G55370 71.429 77 21 1 25 100 59 135 3.73e-33 122
MS.gene049856.t1 AT5G02460 73.611 72 18 1 25 95 78 149 2.02e-32 120
MS.gene049856.t1 AT1G21340 65.116 86 18 1 40 113 37 122 4.73e-32 117
MS.gene049856.t1 AT4G24060 72.727 66 18 0 30 95 42 107 5.22e-32 119
MS.gene049856.t1 AT1G07640 65.823 79 26 1 18 95 53 131 5.57e-32 118
MS.gene049856.t1 AT1G07640 65.823 79 26 1 18 95 61 139 7.53e-32 118
MS.gene049856.t1 AT3G52440 59.574 94 33 1 43 136 27 115 8.05e-32 116
MS.gene049856.t1 AT5G60850 72.000 75 19 1 39 111 49 123 9.60e-32 117
MS.gene049856.t1 AT3G52440 59.574 94 33 1 43 136 46 134 1.08e-31 116
MS.gene049856.t1 AT3G61850 52.066 121 52 3 27 147 49 163 1.13e-31 116
MS.gene049856.t1 AT3G61850 52.066 121 52 3 27 147 49 163 1.13e-31 116
MS.gene049856.t1 AT3G61850 52.066 121 52 3 27 147 61 175 1.33e-31 116
MS.gene049856.t1 AT2G37590 67.123 73 23 1 25 96 72 144 1.35e-31 117
MS.gene049856.t1 AT3G61850 52.066 121 52 3 27 147 49 163 1.56e-31 117
MS.gene049856.t1 AT3G61850 52.066 121 52 3 27 147 61 175 1.82e-31 117
MS.gene049856.t1 AT1G07640 69.444 72 21 1 25 95 4 75 2.33e-31 115
MS.gene049856.t1 AT2G28810 69.565 69 20 1 24 92 61 128 3.54e-31 116
MS.gene049856.t1 AT2G28810 69.565 69 20 1 24 92 78 145 5.67e-31 116
MS.gene049856.t1 AT5G62940 77.049 61 14 0 31 91 63 123 9.92e-31 115
MS.gene049856.t1 AT5G65590 80.328 61 12 0 41 101 41 101 1.19e-30 114
MS.gene049856.t1 AT1G28310 87.273 55 7 0 41 95 27 81 3.38e-30 113
MS.gene049856.t1 AT1G28310 58.947 95 39 0 1 95 11 105 4.88e-30 113
MS.gene049856.t1 AT3G21270 90.566 53 5 0 41 93 29 81 1.46e-29 109
MS.gene049856.t1 AT4G38000 72.727 66 17 1 30 94 30 95 3.77e-29 109
MS.gene049856.t1 AT4G21050 63.158 76 28 0 38 113 21 96 5.42e-29 107
MS.gene049856.t1 AT3G50410 72.308 65 18 0 33 97 22 86 8.14e-29 108
MS.gene049856.t1 AT4G00940 80.702 57 11 0 39 95 66 122 2.03e-28 108
MS.gene049856.t1 AT4G00940 80.702 57 11 0 39 95 66 122 2.03e-28 108
MS.gene049856.t1 AT4G00940 80.702 57 11 0 39 95 66 122 2.03e-28 108
MS.gene049856.t1 AT5G66940 61.905 84 25 2 37 113 28 111 2.07e-28 106
MS.gene049856.t1 AT1G64620 72.131 61 17 0 30 90 38 98 6.48e-28 108
MS.gene049856.t1 AT2G46590 63.158 76 24 1 13 88 44 115 1.05e-27 107
MS.gene049856.t1 AT2G46590 63.158 76 24 1 13 88 56 127 1.23e-27 107
MS.gene049856.t1 AT1G47655 75.439 57 14 0 33 89 21 77 2.16e-26 101
MS.gene049856.t1 AT5G62430 47.959 98 45 2 3 100 22 113 3.47e-26 102
MS.gene049856.t1 AT3G47500 52.632 95 41 1 4 98 77 167 5.27e-26 104
MS.gene049856.t1 AT5G39660 61.333 75 25 1 24 98 125 195 7.83e-25 101
MS.gene049856.t1 AT5G39660 61.333 75 25 1 24 98 125 195 7.83e-25 101
MS.gene049856.t1 AT5G39660 61.333 75 25 1 24 98 125 195 7.83e-25 101
MS.gene049856.t1 AT1G69570 53.488 86 36 1 9 94 104 185 1.46e-24 99.8
MS.gene049856.t1 AT4G21080 56.579 76 24 1 43 109 27 102 1.99e-24 97.1
MS.gene049856.t1 AT1G26790 55.263 76 33 1 20 94 89 164 5.52e-24 97.8
MS.gene049856.t1 AT4G21040 75.000 52 13 0 43 94 27 78 8.46e-24 94.7
MS.gene049856.t1 AT2G34140 66.071 56 19 0 39 94 56 111 4.54e-23 91.3
MS.gene049856.t1 AT1G29160 66.071 56 19 0 39 94 60 115 8.55e-23 90.9
MS.gene049856.t1 AT4G21030 51.471 68 33 0 38 105 18 85 1.59e-15 72.0

Find 57 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTTTGGTTTCCTAAAA+TGG 0.139828 4.4:-43987853 None:intergenic
GGGAAACAAGTGAGTGGATT+TGG 0.231178 4.4:-43987741 None:intergenic
GCTTCTGGTTGAGGAGGTTT+TGG 0.248273 4.4:-43987501 None:intergenic
GCAAGTCTTGTAGGAGATAT+TGG 0.255429 4.4:+43987607 MS.gene049856:CDS
GAATGGTCTCACTTCATCTT+GGG 0.274434 4.4:+43988220 MS.gene049856:CDS
GATATTTCTGCAAGTCTTGT+AGG 0.294030 4.4:+43987598 MS.gene049856:CDS
GGAATGGTCTCACTTCATCT+TGG 0.324184 4.4:+43988219 MS.gene049856:CDS
ATTGTTGTAGTAACAAAATT+TGG 0.325870 4.4:-43987556 None:intergenic
TTTCCATGGCAGTTCAATAA+TGG 0.330980 4.4:+43988152 MS.gene049856:CDS
GGAAACAAGTGAGTGGATTT+GGG 0.349121 4.4:-43987740 None:intergenic
ACGAGACGGTGTCTACATTA+GGG 0.358019 4.4:-43988264 None:intergenic
ATGGCTGAAATGGATCATTT+AGG 0.361202 4.4:+43988185 MS.gene049856:CDS
AGACACAAATATGGCTGAAA+TGG 0.367887 4.4:+43988175 MS.gene049856:CDS
CACGAGACGGTGTCTACATT+AGG 0.377042 4.4:-43988265 None:intergenic
CAATAATGGAGACACAAATA+TGG 0.378026 4.4:+43988166 MS.gene049856:CDS
CAAGACTTGCAGAAATATCT+TGG 0.387546 4.4:-43987594 None:intergenic
AGGAATGTTCCTGTTGGTGG+GGG 0.412807 4.4:+43987648 MS.gene049856:CDS
TTCTTCTAGTGGACAACAAC+AGG 0.413714 4.4:+43986702 MS.gene049856:CDS
TGTGAGATCATTGGAATCAT+AGG 0.425382 4.4:-43987772 None:intergenic
GGATTTGGGTTGGTTTGAAA+TGG 0.429582 4.4:-43987726 None:intergenic
AGCATTAGCTAGGCTTCAAA+AGG 0.442460 4.4:+43987797 MS.gene049856:CDS
TGCCACATGAGGTGTTGGTT+TGG 0.466166 4.4:-43987866 None:intergenic
GCAAATGTCTAACCAGTCAT+TGG 0.467897 4.4:+43987437 MS.gene049856:intron
AAGAAGTGTTTGTATGGGGA+TGG 0.488483 4.4:+43986678 None:intergenic
AGGCTTCAAAAGGGTCAACT+TGG 0.489311 4.4:+43987807 MS.gene049856:CDS
ACAAGTGAGTGGATTTGGGT+TGG 0.491105 4.4:-43987736 None:intergenic
TAAGGAATGTTCCTGTTGGT+GGG 0.496140 4.4:+43987646 MS.gene049856:CDS
AATGGTCTCACTTCATCTTG+GGG 0.497543 4.4:+43988221 MS.gene049856:CDS
TGTAGGAGATATTGGACTAA+AGG 0.499003 4.4:+43987615 MS.gene049856:CDS
GTGTTGTTTGAGTCACATCT+TGG 0.500769 4.4:-43987534 None:intergenic
TGTGGCATTCTTAACAATCA+TGG 0.500936 4.4:+43987882 MS.gene049856:CDS
ATGGATCATTTAGGAAGAGC+TGG 0.502060 4.4:+43988194 MS.gene049856:CDS
TAATGCTAGTGTGAGATCAT+TGG 0.503293 4.4:-43987781 None:intergenic
TTGGAATCATAGGACATTGA+AGG 0.508739 4.4:-43987762 None:intergenic
TTAGGAAGAGCTGGTTGGAA+TGG 0.509850 4.4:+43988203 MS.gene049856:CDS
CTAAGGAATGTTCCTGTTGG+TGG 0.517333 4.4:+43987645 MS.gene049856:CDS
ATGGGGATGGATTCTTCTAG+TGG 0.553754 4.4:+43986691 MS.gene049856:CDS
TTTAGAGCTTCTGGTTGAGG+AGG 0.557206 4.4:-43987507 None:intergenic
AAGGAATGTTCCTGTTGGTG+GGG 0.558824 4.4:+43987647 MS.gene049856:CDS
TTAACATGCTCTCCAATGAC+TGG 0.564124 4.4:-43987449 None:intergenic
GGACTAAAGGTGGTACACTA+AGG 0.568077 4.4:+43987628 MS.gene049856:CDS
AAGAATGCCACATGAGGTGT+TGG 0.570267 4.4:-43987871 None:intergenic
ATCATTTAGGAAGAGCTGGT+TGG 0.573027 4.4:+43988198 MS.gene049856:CDS
CGAGACGGTGTCTACATTAG+GGG 0.579103 4.4:-43988263 None:intergenic
TGGAATCATAGGACATTGAA+GGG 0.583945 4.4:-43987761 None:intergenic
GGAATGTTCCTGTTGGTGGG+GGG 0.588003 4.4:+43987649 MS.gene049856:CDS
ATCTCACACTAGCATTAGCT+AGG 0.588061 4.4:+43987787 MS.gene049856:CDS
AACCAAACCAACACCTCATG+TGG 0.593887 4.4:+43987864 MS.gene049856:CDS
CATCATCAGCTTCATCAAAG+AGG 0.595811 4.4:+43987691 MS.gene049856:CDS
ATGGTCTCACTTCATCTTGG+GGG 0.616298 4.4:+43988222 MS.gene049856:CDS
TCTCCATTATTGAACTGCCA+TGG 0.629912 4.4:-43988155 None:intergenic
GCATTAGCTAGGCTTCAAAA+GGG 0.630153 4.4:+43987798 MS.gene049856:CDS
GAGACGGTGTCTACATTAGG+GGG 0.640287 4.4:-43988262 None:intergenic
AGGAGATATTGGACTAAAGG+TGG 0.646558 4.4:+43987618 MS.gene049856:CDS
ACACTAAGGAATGTTCCTGT+TGG 0.660187 4.4:+43987642 MS.gene049856:CDS
ATTGAAGGGAAACAAGTGAG+TGG 0.662440 4.4:-43987747 None:intergenic
ATTGTTAAGAATGCCACATG+AGG 0.723204 4.4:-43987877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAAGGAAAATAAT+AGG - chr4.4:43986876-43986895 None:intergenic 10.0%
!! TAACATTATGTTTGAATTAA+CGG + chr4.4:43987199-43987218 MS.gene049856:intron 15.0%
!! TGAAAGAAGAAAAAAAATTA+AGG - chr4.4:43986887-43986906 None:intergenic 15.0%
!! ATTGTTGTAGTAACAAAATT+TGG - chr4.4:43987559-43987578 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG + chr4.4:43987375-43987394 MS.gene049856:intron 20.0%
!! TTCCATCAAATATTAATTCT+AGG - chr4.4:43987033-43987052 None:intergenic 20.0%
!!! ACTAATTTTAATTCTTCCAA+GGG - chr4.4:43986916-43986935 None:intergenic 20.0%
!!! TACTAATTTTAATTCTTCCA+AGG - chr4.4:43986917-43986936 None:intergenic 20.0%
!!! TTACTTTATTTGATCTAGAA+GGG - chr4.4:43987105-43987124 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+AGG - chr4.4:43987106-43987125 None:intergenic 20.0%
! AACAAGAAATGTGTAATGTT+AGG + chr4.4:43988099-43988118 MS.gene049856:intron 25.0%
! ACAAGAAATGTGTAATGTTA+GGG + chr4.4:43988100-43988119 MS.gene049856:intron 25.0%
! ATAAATCTTTAGTACTGCTT+GGG + chr4.4:43986835-43986854 MS.gene049856:intron 25.0%
! ATATTTGATGGAATAAAGTC+AGG + chr4.4:43987040-43987059 MS.gene049856:intron 25.0%
! TAGGGAACAAAATGAAAATA+GGG + chr4.4:43988118-43988137 MS.gene049856:intron 25.0%
! TATTTGATGGAATAAAGTCA+GGG + chr4.4:43987041-43987060 MS.gene049856:intron 25.0%
! TTAGGGAACAAAATGAAAAT+AGG + chr4.4:43988117-43988136 MS.gene049856:intron 25.0%
!! GAACATGATTTTTCCATTTT+AGG + chr4.4:43987840-43987859 MS.gene049856:CDS 25.0%
!! TATTAATGGATGTACATGTT+GGG + chr4.4:43987143-43987162 MS.gene049856:intron 25.0%
!! TTATTAATGGATGTACATGT+TGG + chr4.4:43987142-43987161 MS.gene049856:intron 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG + chr4.4:43988128-43988147 MS.gene049856:intron 25.0%
ACACAACACAACAAATTTAG+TGG - chr4.4:43987410-43987429 None:intergenic 30.0%
ATGCTCATTTCATGATCATA+AGG - chr4.4:43988044-43988063 None:intergenic 30.0%
CATAAATCTTTAGTACTGCT+TGG + chr4.4:43986834-43986853 MS.gene049856:intron 30.0%
GAATCAGAAAAGTTACATTG+TGG + chr4.4:43987233-43987252 MS.gene049856:intron 30.0%
GCAGTACTAAAGATTTATGA+AGG - chr4.4:43986833-43986852 None:intergenic 30.0%
GGCCTAGAATTAATATTTGA+TGG + chr4.4:43987028-43987047 MS.gene049856:intron 30.0%
TTATGAAGGACAAAGATAGA+AGG - chr4.4:43986819-43986838 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG + chr4.4:43988166-43988185 MS.gene049856:CDS 30.0%
AAAGAATCCATGGTTGTTTG+AGG - chr4.4:43987919-43987938 None:intergenic 35.0%
AATGCTAATGGCAATGCTAA+TGG + chr4.4:43988005-43988024 MS.gene049856:intron 35.0%
AGACACAAATATGGCTGAAA+TGG + chr4.4:43988175-43988194 MS.gene049856:CDS 35.0%
ATGGCTGAAATGGATCATTT+AGG + chr4.4:43988185-43988204 MS.gene049856:CDS 35.0%
ATTGTTAAGAATGCCACATG+AGG - chr4.4:43987880-43987899 None:intergenic 35.0%
CAAGACTTGCAGAAATATCT+TGG - chr4.4:43987597-43987616 None:intergenic 35.0%
GTGCAGAATCTTTACTACAT+GGG + chr4.4:43987966-43987985 MS.gene049856:intron 35.0%
TAAGTGCTTCAAAGAATCCA+TGG - chr4.4:43987929-43987948 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG - chr4.4:43987784-43987803 None:intergenic 35.0%
TCTTCTTTCAACAAAACCCT+TGG + chr4.4:43986897-43986916 MS.gene049856:intron 35.0%
TGCAGAATCTTTACTACATG+GGG + chr4.4:43987967-43987986 MS.gene049856:intron 35.0%
TGGAATCATAGGACATTGAA+GGG - chr4.4:43987764-43987783 None:intergenic 35.0%
TGTAGGAGATATTGGACTAA+AGG + chr4.4:43987615-43987634 MS.gene049856:CDS 35.0%
TGTGAGATCATTGGAATCAT+AGG - chr4.4:43987775-43987794 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG + chr4.4:43987965-43987984 MS.gene049856:intron 35.0%
TGTGGCATTCTTAACAATCA+TGG + chr4.4:43987882-43987901 MS.gene049856:CDS 35.0%
TTAGCATCTTCATCTTTGTG+AGG + chr4.4:43987079-43987098 MS.gene049856:intron 35.0%
TTGGAATCATAGGACATTGA+AGG - chr4.4:43987765-43987784 None:intergenic 35.0%
TTTCCATGGCAGTTCAATAA+TGG + chr4.4:43988152-43988171 MS.gene049856:CDS 35.0%
! GATATTTCTGCAAGTCTTGT+AGG + chr4.4:43987598-43987617 MS.gene049856:CDS 35.0%
!! GGATTCTTTGAAGCACTTAT+GGG + chr4.4:43987930-43987949 MS.gene049856:intron 35.0%
!! GTTGATAATGGCAATGCTAA+TGG + chr4.4:43987993-43988012 MS.gene049856:intron 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG - chr4.4:43987856-43987875 None:intergenic 35.0%
!! TGGATTCTTTGAAGCACTTA+TGG + chr4.4:43987929-43987948 MS.gene049856:intron 35.0%
AACCATTCCTCAAACAACCA+TGG + chr4.4:43987909-43987928 MS.gene049856:intron 40.0%
AATGGTCTCACTTCATCTTG+GGG + chr4.4:43988221-43988240 MS.gene049856:CDS 40.0%
ACACTAAGGAATGTTCCTGT+TGG + chr4.4:43987642-43987661 MS.gene049856:CDS 40.0%
ACATTAGGGGGCTATTAAGA+AGG - chr4.4:43988253-43988272 None:intergenic 40.0%
AGCATTAGCTAGGCTTCAAA+AGG + chr4.4:43987797-43987816 MS.gene049856:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG + chr4.4:43987618-43987637 MS.gene049856:CDS 40.0%
ATCATTTAGGAAGAGCTGGT+TGG + chr4.4:43988198-43988217 MS.gene049856:CDS 40.0%
ATCCATGGTTGTTTGAGGAA+TGG - chr4.4:43987914-43987933 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG + chr4.4:43987787-43987806 MS.gene049856:CDS 40.0%
ATGAACCACATGTATACAGC+TGG + chr4.4:43987005-43987024 MS.gene049856:intron 40.0%
ATGGATCATTTAGGAAGAGC+TGG + chr4.4:43988194-43988213 MS.gene049856:CDS 40.0%
ATTGAAGGGAAACAAGTGAG+TGG - chr4.4:43987750-43987769 None:intergenic 40.0%
CATCATCAGCTTCATCAAAG+AGG + chr4.4:43987691-43987710 MS.gene049856:CDS 40.0%
GAATGGTCTCACTTCATCTT+GGG + chr4.4:43988220-43988239 MS.gene049856:CDS 40.0%
GCAAATGTCTAACCAGTCAT+TGG + chr4.4:43987437-43987456 MS.gene049856:intron 40.0%
GCAGAATCTTTACTACATGG+GGG + chr4.4:43987968-43987987 MS.gene049856:intron 40.0%
GCATTAGCTAGGCTTCAAAA+GGG + chr4.4:43987798-43987817 MS.gene049856:CDS 40.0%
GCTGTATACATGTGGTTCAT+AGG - chr4.4:43987005-43987024 None:intergenic 40.0%
TAAGGAATGTTCCTGTTGGT+GGG + chr4.4:43987646-43987665 MS.gene049856:CDS 40.0%
TCTCCATTATTGAACTGCCA+TGG - chr4.4:43988158-43988177 None:intergenic 40.0%
TGAACCACATGTATACAGCT+GGG + chr4.4:43987006-43987025 MS.gene049856:intron 40.0%
TTAACATGCTCTCCAATGAC+TGG - chr4.4:43987452-43987471 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG + chr4.4:43987607-43987626 MS.gene049856:CDS 40.0%
! GGAAACAAGTGAGTGGATTT+GGG - chr4.4:43987743-43987762 None:intergenic 40.0%
! TTCTTCTAGTGGACAACAAC+AGG + chr4.4:43986702-43986721 MS.gene049856:CDS 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG - chr4.4:43987729-43987748 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG - chr4.4:43987537-43987556 None:intergenic 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG - chr4.4:43987513-43987532 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG - chr4.4:43987519-43987538 None:intergenic 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG + chr4.4:43988138-43988157 MS.gene049856:intron 40.0%
AACCAAACCAACACCTCATG+TGG + chr4.4:43987864-43987883 MS.gene049856:CDS 45.0%
AAGAATGCCACATGAGGTGT+TGG - chr4.4:43987874-43987893 None:intergenic 45.0%
AAGGAATGTTCCTGTTGGTG+GGG + chr4.4:43987647-43987666 MS.gene049856:CDS 45.0%
AGGCTTCAAAAGGGTCAACT+TGG + chr4.4:43987807-43987826 MS.gene049856:CDS 45.0%
ATGGTCTCACTTCATCTTGG+GGG + chr4.4:43988222-43988241 MS.gene049856:CDS 45.0%
CTAAGGAATGTTCCTGTTGG+TGG + chr4.4:43987645-43987664 MS.gene049856:CDS 45.0%
GAACCACATGTATACAGCTG+GGG + chr4.4:43987007-43987026 MS.gene049856:intron 45.0%
GAATCTTTACTACATGGGGG+AGG + chr4.4:43987971-43987990 MS.gene049856:intron 45.0%
GGAATGGTCTCACTTCATCT+TGG + chr4.4:43988219-43988238 MS.gene049856:CDS 45.0%
GGACTAAAGGTGGTACACTA+AGG + chr4.4:43987628-43987647 MS.gene049856:CDS 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG + chr4.4:43988203-43988222 MS.gene049856:CDS 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG - chr4.4:43987739-43987758 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG + chr4.4:43986691-43986710 MS.gene049856:CDS 45.0%
! GGGAAACAAGTGAGTGGATT+TGG - chr4.4:43987744-43987763 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG - chr4.4:43987510-43987529 None:intergenic 45.0%
!! TACATGGGGGAGGTTGATAA+TGG + chr4.4:43987981-43988000 MS.gene049856:intron 45.0%
!! AAAAATTGAAAATTTATTAA+TGG + chr4.4:43987129-43987148 MS.gene049856:intron 5.0%
ACTGCTTGGGAGAGTGAGAA+AGG + chr4.4:43986848-43986867 MS.gene049856:intron 50.0%
! AGGAATGTTCCTGTTGGTGG+GGG + chr4.4:43987648-43987667 MS.gene049856:CDS 50.0%
!! GCTTCTGGTTGAGGAGGTTT+TGG - chr4.4:43987504-43987523 None:intergenic 50.0%
!! TGCCACATGAGGTGTTGGTT+TGG - chr4.4:43987869-43987888 None:intergenic 50.0%
AGGCCCCAGCTGTATACATG+TGG - chr4.4:43987013-43987032 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG + chr4.4:43988227-43988246 MS.gene049856:CDS 55.0%
TTTCTACACCCCCCACCAAC+AGG - chr4.4:43987660-43987679 None:intergenic 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG + chr4.4:43987649-43987668 MS.gene049856:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 43986691 43988274 43986691 ID=MS.gene049856
chr4.4 mRNA 43986691 43988274 43986691 ID=MS.gene049856.t1;Parent=MS.gene049856
chr4.4 exon 43986691 43986723 43986691 ID=MS.gene049856.t1.exon1;Parent=MS.gene049856.t1
chr4.4 CDS 43986691 43986723 43986691 ID=cds.MS.gene049856.t1;Parent=MS.gene049856.t1
chr4.4 exon 43987438 43987903 43987438 ID=MS.gene049856.t1.exon2;Parent=MS.gene049856.t1
chr4.4 CDS 43987438 43987903 43987438 ID=cds.MS.gene049856.t1;Parent=MS.gene049856.t1
chr4.4 exon 43988150 43988274 43988150 ID=MS.gene049856.t1.exon3;Parent=MS.gene049856.t1
chr4.4 CDS 43988150 43988274 43988150 ID=cds.MS.gene049856.t1;Parent=MS.gene049856.t1
Gene Sequence

>MS.gene049856

ATGGGGATGGATTCTTCTAGTGGACAACAACAGGTGAAATATTTATTTCATATCATATCATATGTAATTAAATTATCATGCATGTAGTCATGTAATATTTATTAACGTGACTTCTTTGATTTTTGCCTTCTATCTTTGTCCTTCATAAATCTTTAGTACTGCTTGGGAGAGTGAGAAAGGAACCTATTATTTTCCTTAATTTTTTTTCTTCTTTCAACAAAACCCTTGGAAGAATTAAAATTAGTAAAGCTATGTCTCTCTACAATTTTATTATGTACTATATAGCATATACTATACTACTCATAGTGTTTCCTATGAACCACATGTATACAGCTGGGGCCTAGAATTAATATTTGATGGAATAAAGTCAGGGAGAATAGAAAAAAAATTAGCATCTTCATCTTTGTGAGGCCCTTCTAGATCAAATAAAGTAAAAAGAAAAATTGAAAATTTATTAATGGATGTACATGTTGGGAGTGAGTAATTTATTCAGTTTCGTTTTAGTTCTTAACATTATGTTTGAATTAACGGTGAATTTGTCAGAATCAGAAAAGTTACATTGTGGAGTTTCGATAATACTACGACGACACACAATTTTGTCAAATTCGCAATGATTTCAAAAATCAATTAACTCTTTGTTTTTTTTACTTGTGTACGCATATGTATGTACTATGTATAGATAGATCACAAAAATTTGTACTATTTGGTTTTCATGTCCACTAAATTTGTTGTGTTGTGTTGTTGCAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGCAGAACAAGACAAAAAGCCAAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTAAGGAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAGCTTCATCAAAGAGGTCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCAATGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGCATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCATGGATTCTTTGAAGCACTTATGGGATCTCAAAACAATGTGCAGAATCTTTACTACATGGGGGAGGTTGATAATGGCAATGCTAATGGCAATGCTAATGGTGAGATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTTTGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGACACAAATATGGCTGAAATGGATCATTTAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTTAATAGCCCCCTAATGTAG
Protein sequence

>MS.gene049856.t1

MGMDSSSGQQQQMSNQSLESMLTCSKAEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSMSYDSNDLTLALARLQKGQLGFDHEHDFSILGNQTNTSCGILNNHGFPWQFNNGDTNMAEMDHLGRAGWNGLTSSWGHGLLNSPLM