AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08661

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08661.t1 MTR_8g085980 100.000 337 0 0 35 371 113 449 0.0 703
MS.gene08661.t1 MTR_7g085800 95.719 327 14 0 35 361 113 439 0.0 632
MS.gene08661.t1 MTR_1g106005 92.308 338 25 1 35 371 113 450 0.0 629
MS.gene08661.t1 MTR_3g110720 94.479 326 18 0 35 360 113 438 0.0 626
MS.gene08661.t1 MTR_4g097830 93.884 327 20 0 35 361 113 439 0.0 625
MS.gene08661.t1 MTR_6g029190 87.537 337 40 1 35 371 114 448 0.0 595
MS.gene08661.t1 MTR_2g041670 74.455 321 82 0 36 356 109 429 1.58e-170 484
MS.gene08661.t1 MTR_2g041400 74.367 316 81 0 36 351 109 424 8.75e-167 473
MS.gene08661.t1 MTR_3g063410 90.260 154 15 0 174 327 24 177 5.18e-106 310
MS.gene08661.t1 MTR_3g063410 89.855 138 14 0 190 327 1 138 3.04e-92 273
MS.gene08661.t1 MTR_4g094535 41.304 322 181 1 35 356 111 424 8.97e-87 270
MS.gene08661.t1 MTR_2g031310 40.994 322 182 1 35 356 111 424 3.95e-86 268
MS.gene08661.t1 MTR_8g107250 39.763 337 193 2 35 371 112 438 6.96e-86 267
MS.gene08661.t1 MTR_4g017630 40.994 322 182 1 35 356 111 424 8.17e-86 267
MS.gene08661.t1 MTR_1g101130 40.683 322 183 1 35 356 111 424 1.27e-85 266
MS.gene08661.t1 MTR_4g019090 40.683 322 183 1 35 356 111 424 2.85e-85 266
MS.gene08661.t1 MTR_3g113970 40.373 322 184 1 35 356 113 426 2.90e-85 266
MS.gene08661.t1 MTR_7g089120 40.683 322 183 2 35 356 111 424 9.21e-85 265
MS.gene08661.t1 MTR_4g019110 40.994 322 182 1 35 356 111 424 2.73e-84 263
MS.gene08661.t1 MTR_8g098360 39.130 322 188 1 35 356 111 424 3.48e-84 263
MS.gene08661.t1 MTR_7g117050 28.528 326 217 5 41 355 119 439 2.04e-47 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08661.t1 AT5G19780 98.521 338 4 1 35 371 113 450 0.0 692
MS.gene08661.t1 AT5G19770 98.521 338 4 1 35 371 113 450 0.0 692
MS.gene08661.t1 AT4G14960 93.808 323 20 0 35 357 113 435 0.0 618
MS.gene08661.t1 AT1G04820 93.808 323 20 0 35 357 113 435 0.0 617
MS.gene08661.t1 AT1G50010 93.808 323 20 0 35 357 113 435 0.0 617
MS.gene08661.t1 AT1G64740 94.118 323 19 0 35 357 113 435 0.0 615
MS.gene08661.t1 AT4G14960 87.458 295 30 1 35 329 113 400 0.0 516
MS.gene08661.t1 AT1G75780 40.683 322 183 1 35 356 112 425 8.16e-87 270
MS.gene08661.t1 AT1G20010 40.683 322 183 1 35 356 112 425 4.07e-86 268
MS.gene08661.t1 AT5G62700 40.683 322 183 1 35 356 111 424 9.49e-86 267
MS.gene08661.t1 AT5G62690 40.683 322 183 1 35 356 111 424 9.49e-86 267
MS.gene08661.t1 AT5G23860 40.683 322 183 1 35 356 111 424 1.82e-85 266
MS.gene08661.t1 AT5G23860 40.683 322 183 1 35 356 111 424 1.82e-85 266
MS.gene08661.t1 AT2G29550 40.373 322 184 1 35 356 111 424 1.94e-85 266
MS.gene08661.t1 AT4G20890 40.683 322 183 2 35 356 111 424 3.70e-85 265
MS.gene08661.t1 AT5G12250 40.683 322 183 2 35 356 111 424 8.57e-85 265
MS.gene08661.t1 AT5G44340 40.683 322 183 2 35 356 111 424 5.11e-84 262
MS.gene08661.t1 AT5G05620 29.141 326 215 5 41 355 119 439 4.95e-48 169
MS.gene08661.t1 AT3G61650 28.528 326 217 5 41 355 119 439 9.04e-47 166

Find 106 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTCTTTCTGTTGATTA+TGG 0.176344 4.3:+14773797 MS.gene08661:CDS
AGGTTTGGGTTCACTTCTTT+TGG 0.254943 4.3:+14773775 MS.gene08661:CDS
GGTGGAACCGGTTCAGGTTT+GGG 0.262975 4.3:+14773761 MS.gene08661:CDS
CAGCCTCCTTCAGTTGTTCC+TGG 0.319747 4.3:+14774851 MS.gene08661:CDS
TTGCCGGAGATGAGTTGTTC+AGG 0.320827 4.3:-14773516 None:intergenic
AACACAGCATTGGTAATTTC+CGG 0.327913 4.3:-14774346 None:intergenic
TGGTGGAACCGGTTCAGGTT+TGG 0.328516 4.3:+14773760 MS.gene08661:CDS
TTTGGATCGTGTTAGGAAAT+TGG 0.329849 4.3:+14773688 MS.gene08661:CDS
GTTGGTGGTGGAACCGGTTC+AGG 0.343909 4.3:+14773755 MS.gene08661:CDS
ACCACCTCGTTGAGGTTTGA+TGG 0.345949 4.3:+14774196 MS.gene08661:CDS
ATCTGTGTTTGGATCGTGTT+AGG 0.350514 4.3:+14773681 MS.gene08661:CDS
CACTGATGTGGCGGTGCTCT+TGG 0.354267 4.3:+14774072 MS.gene08661:CDS
AACGCTGTTGGTGGTGGAAC+CGG 0.370166 4.3:+14773749 MS.gene08661:CDS
GTAGATGGTGAATCCAAGTT+TGG 0.394713 4.3:-14773828 None:intergenic
ACAGCAGCATTGACATCCTT+TGG 0.397105 4.3:-14774454 None:intergenic
GGAAATTGTAGATCTGTGTT+TGG 0.411361 4.3:+14773670 MS.gene08661:intron
GCCTTAGCAGCAGAGATAAC+AGG 0.413078 4.3:-14774301 None:intergenic
CCAGTGGACAAAGGCTCTCT+TGG 0.425867 4.3:-14774978 None:intergenic
AGGCGATCTATGACATTTGT+AGG 0.426144 4.3:+14774101 MS.gene08661:CDS
GTTAGCGGCGTCTTCTTTGC+CGG 0.427769 4.3:-14773532 None:intergenic
GCCATATATTTCCCATGCCT+TGG 0.429047 4.3:-14774400 None:intergenic
CTAGGTTTCAACTGCTGTTG+TGG 0.430726 4.3:+14774006 MS.gene08661:intron
CAACTTATACCAACTTGAAC+AGG 0.431265 4.3:+14774146 MS.gene08661:CDS
TCCAAGGCATGGGAAATATA+TGG 0.435927 4.3:+14774399 MS.gene08661:CDS
ATGTATGACAGGTGCCCAAC+TGG 0.444943 4.3:+14774806 MS.gene08661:intron
GATAACTGTACCGGTCTTCA+AGG 0.448969 4.3:+14773713 MS.gene08661:CDS
GTCGGTGAGGGCATGGAAGA+AGG 0.451862 4.3:+14775004 MS.gene08661:CDS
AAGTGAACCCAAACCTGAAC+CGG 0.452878 4.3:-14773768 None:intergenic
TACCTGAGGGGAAGGGTAGA+TGG 0.468178 4.3:-14773843 None:intergenic
TGCCGGAGATGAGTTGTTCA+GGG 0.468722 4.3:-14773515 None:intergenic
CGAGAGCAGCAAGATCTTCA+CGG 0.470136 4.3:-14775042 None:intergenic
TCGGTGAGGGCATGGAAGAA+GGG 0.478798 4.3:+14775005 MS.gene08661:CDS
CCAAGAGAGCCTTTGTCCAC+TGG 0.491892 4.3:+14774978 MS.gene08661:CDS
ACGAGGATACGGCACAAGAT+TGG 0.495414 4.3:-14774251 None:intergenic
ACCTGTTATCTCTGCTGCTA+AGG 0.495705 4.3:+14774300 MS.gene08661:CDS
CACCATCTACCCTTCCCCTC+AGG 0.496887 4.3:+14773841 MS.gene08661:CDS
GGACTGTTCAATTTGTTGAC+TGG 0.497630 4.3:+14774497 MS.gene08661:CDS
GTCATCGATGAAGTTCGTTC+CGG 0.499563 4.3:+14773471 None:intergenic
CTGGTATGTCGGTGAGGGCA+TGG 0.501551 4.3:+14774997 MS.gene08661:CDS
GGAGCAGAAGATGATGAGGA+AGG 0.503402 4.3:+14775094 MS.gene08661:CDS
CTGTTCAAGTTGGTATAAGT+TGG 0.510056 4.3:-14774145 None:intergenic
CACCCTGAACAACTCATCTC+CGG 0.515494 4.3:+14773513 MS.gene08661:CDS
TACCACATTTGAAACCAGTT+GGG 0.518530 4.3:-14774820 None:intergenic
ATCGAACTTGTGATCAATGC+GGG 0.523345 4.3:-14774945 None:intergenic
GAGAAAGATTATGAAGAAGT+TGG 0.523429 4.3:+14775064 MS.gene08661:CDS
GTTCAGGGTGGAAGAGTTGT+CGG 0.523884 4.3:-14773500 None:intergenic
TCCTGGCGGTGACCTTGCTA+AGG 0.530128 4.3:+14774868 MS.gene08661:CDS
GAAGAGTTGTCGGTAGGTAC+CGG 0.530553 4.3:-14773490 None:intergenic
AGAAGATGATGAGGAAGGAG+AGG 0.532591 4.3:+14775099 MS.gene08661:CDS
TTATGAAGAAGTTGGTGCTG+AGG 0.534554 4.3:+14775072 MS.gene08661:CDS
GAATGTTGTACCTGAGGGGA+AGG 0.534693 4.3:-14773851 None:intergenic
CAGTAACAACACTGCTGTTG+CGG 0.536971 4.3:+14774913 MS.gene08661:CDS
GTCCACTGGTATGTCGGTGA+GGG 0.540123 4.3:+14774992 MS.gene08661:CDS
CACTTAGCCATCATACTAGC+AGG 0.541426 4.3:-14774373 None:intergenic
GATACGGCACAAGATTGGTC+TGG 0.542354 4.3:-14774246 None:intergenic
TCATGAGCAGCTATCTGTGC+CGG 0.543119 4.3:+14774327 MS.gene08661:CDS
TATGGAAAGAAATCCAAACT+TGG 0.546100 4.3:+14773815 MS.gene08661:CDS
TATGAAGAAGTTGGTGCTGA+GGG 0.548545 4.3:+14775073 MS.gene08661:CDS
ATACCACATTTGAAACCAGT+TGG 0.549643 4.3:-14774821 None:intergenic
CGGTGAGGGCATGGAAGAAG+GGG 0.558712 4.3:+14775006 MS.gene08661:CDS
TCTTCTTGAGCACACTGATG+TGG 0.559183 4.3:+14774060 MS.gene08661:CDS
GAGAGCAGCAAGATCTTCAC+GGG 0.561278 4.3:-14775041 None:intergenic
ACCTTAGCAAGGTCACCGCC+AGG 0.564664 4.3:-14774869 None:intergenic
GCCTTTGTCCACTGGTATGT+CGG 0.567211 4.3:+14774986 MS.gene08661:CDS
ATGAAATGAATACGAGGATA+CGG 0.568430 4.3:-14774262 None:intergenic
TCCTCTAGCGAAATTGTTAG+CGG 0.568659 4.3:-14773547 None:intergenic
AAACCTCAACGAGGTGGTGA+GGG 0.569782 4.3:-14774191 None:intergenic
GTCGATAGAACACTGTTGTA+TGG 0.573851 4.3:-14774031 None:intergenic
GCTAAGTGTGATCCAAGGCA+TGG 0.576706 4.3:+14774388 MS.gene08661:CDS
TGATATCAACCTGTTCAAGT+TGG 0.577755 4.3:-14774155 None:intergenic
GTTTGAGCCTGCTAGTATGA+TGG 0.579221 4.3:+14774366 MS.gene08661:CDS
TGAGGGAGCAGAAGATGATG+AGG 0.580692 4.3:+14775090 MS.gene08661:CDS
CAGCTCTTTGCACCTTAGCA+AGG 0.580894 4.3:-14774880 None:intergenic
ATAACTGTACCGGTCTTCAA+GGG 0.586323 4.3:+14773714 MS.gene08661:CDS
AAATTGGCTGATAACTGTAC+CGG 0.586586 4.3:+14773704 MS.gene08661:CDS
TGCCCAACTGGTTTCAAATG+TGG 0.589673 4.3:+14774818 MS.gene08661:CDS
AGCAGGCTCAAACACAGCAT+TGG 0.589885 4.3:-14774356 None:intergenic
CAAACCTCAACGAGGTGGTG+AGG 0.590642 4.3:-14774192 None:intergenic
TGTCCACTGGTATGTCGGTG+AGG 0.595519 4.3:+14774991 MS.gene08661:CDS
GGCGGTGCTCTTGGATAATG+AGG 0.598449 4.3:+14774081 MS.gene08661:CDS
TCACCGCCAGGAACAACTGA+AGG 0.606748 4.3:-14774857 None:intergenic
GGAGATCTCTTGATATTGAG+AGG 0.607664 4.3:+14774122 MS.gene08661:CDS
CCGTGGTGATGTTGTTCCAA+AGG 0.608496 4.3:+14774438 MS.gene08661:CDS
AATGTTGTACCTGAGGGGAA+GGG 0.614483 4.3:-14773850 None:intergenic
GCCGCTAACAATTTCGCTAG+AGG 0.616891 4.3:+14773546 MS.gene08661:CDS
CTAAGTGTGATCCAAGGCAT+GGG 0.617321 4.3:+14774389 MS.gene08661:CDS
CATCCCTCACCACCTCGTTG+AGG 0.618692 4.3:+14774188 MS.gene08661:CDS
TGCCCTCACCGACATACCAG+TGG 0.624103 4.3:-14774994 None:intergenic
TAACAACACTGCTGTTGCGG+AGG 0.625191 4.3:+14774916 MS.gene08661:CDS
TTCGCTAGAGGACACTACAC+TGG 0.625494 4.3:+14773558 MS.gene08661:CDS
AAGGATGTCAATGCTGCTGT+TGG 0.630667 4.3:+14774457 MS.gene08661:CDS
TCTTGAGCACACTGATGTGG+CGG 0.645120 4.3:+14774063 MS.gene08661:CDS
AGGGTGGAAGAGTTGTCGGT+AGG 0.660011 4.3:-14773496 None:intergenic
TGATGGCTAAGTGTGATCCA+AGG 0.660907 4.3:+14774383 MS.gene08661:CDS
CCTCCTTCAGTTGTTCCTGG+CGG 0.661195 4.3:+14774854 MS.gene08661:CDS
CCGCCAGGAACAACTGAAGG+AGG 0.665389 4.3:-14774854 None:intergenic
TTGGCACCATCAAAACAAAG+AGG 0.672011 4.3:+14774476 MS.gene08661:CDS
ACCGACATACCAGTGGACAA+AGG 0.672853 4.3:-14774987 None:intergenic
ACCATCAAACCTCAACGAGG+TGG 0.684702 4.3:-14774197 None:intergenic
CGGAGATGAGTTGTTCAGGG+TGG 0.684993 4.3:-14773512 None:intergenic
GCTTGCTGTTTGATGTACCG+TGG 0.703831 4.3:+14774421 MS.gene08661:CDS
TCTTGAATGTTGTACCTGAG+GGG 0.708772 4.3:-14773855 None:intergenic
GATCGAACTTGTGATCAATG+CGG 0.718228 4.3:-14774946 None:intergenic
GAAAGCATGAAATGAATACG+AGG 0.732987 4.3:-14774268 None:intergenic
CCTTTGGAACAACATCACCA+CGG 0.768666 4.3:-14774438 None:intergenic
AGCACCATCAAACCTCAACG+AGG 0.774284 4.3:-14774200 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGTTCTTTTTTTTG+TGG + chr4.3:14773635-14773654 MS.gene08661:intron 15.0%
!! AATAACTATTTGTAGAATGA+CGG + chr4.3:14774533-14774552 MS.gene08661:intron 20.0%
!! AATCATGTTGATGTAAATAT+TGG + chr4.3:14773911-14773930 MS.gene08661:intron 20.0%
!! TTCATATTATAATGTATGAC+AGG + chr4.3:14774795-14774814 MS.gene08661:intron 20.0%
!!! ACTGATTTGAAATAATCAAA+TGG + chr4.3:14774680-14774699 MS.gene08661:intron 20.0%
!!! TAATGGTGAATTGTTATTTT+TGG + chr4.3:14773981-14774000 MS.gene08661:intron 20.0%
!!! TTTTATAAGGGTAGATAATT+TGG + chr4.3:14774609-14774628 MS.gene08661:intron 20.0%
!!! ATTGGTTTTTCTGTTTGTAA+TGG + chr4.3:14773964-14773983 MS.gene08661:intron 25.0%
!!! GAATTGTTATTTTTGGATCT+AGG + chr4.3:14773988-14774007 MS.gene08661:intron 25.0%
AAATCTCGAAATTAGGGTTA+GGG - chr4.3:14773601-14773620 None:intergenic 30.0%
AAGCAAGAAATCTCGAAATT+AGG - chr4.3:14773608-14773627 None:intergenic 30.0%
AGCAAGAAATCTCGAAATTA+GGG - chr4.3:14773607-14773626 None:intergenic 30.0%
ATGAAATGAATACGAGGATA+CGG - chr4.3:14774265-14774284 None:intergenic 30.0%
CCTTATAAAATATGCAGCTA+CGG - chr4.3:14774599-14774618 None:intergenic 30.0%
GAGAAAGATTATGAAGAAGT+TGG + chr4.3:14775064-14775083 MS.gene08661:CDS 30.0%
GATTGATGTATAGATCATAG+TGG + chr4.3:14773938-14773957 MS.gene08661:intron 30.0%
TATGGAAAGAAATCCAAACT+TGG + chr4.3:14773815-14773834 MS.gene08661:CDS 30.0%
! CGTAGCTGCATATTTTATAA+GGG + chr4.3:14774597-14774616 MS.gene08661:intron 30.0%
!! ACAATTCACAACTTGTTACT+AGG + chr4.3:14774716-14774735 MS.gene08661:intron 30.0%
!!! TCTTTTTTTTGTGGTTCAGT+TGG + chr4.3:14773644-14773663 MS.gene08661:intron 30.0%
AAATTGGCTGATAACTGTAC+CGG + chr4.3:14773704-14773723 MS.gene08661:CDS 35.0%
ACTAGGACTTAATGTGATCT+GGG + chr4.3:14774733-14774752 MS.gene08661:intron 35.0%
ATCTTGAATGTTGTACCTGA+GGG - chr4.3:14773859-14773878 None:intergenic 35.0%
CAACTTATACCAACTTGAAC+AGG + chr4.3:14774146-14774165 MS.gene08661:CDS 35.0%
GAAATCTCGAAATTAGGGTT+AGG - chr4.3:14773602-14773621 None:intergenic 35.0%
GGAAATTGTAGATCTGTGTT+TGG + chr4.3:14773670-14773689 MS.gene08661:intron 35.0%
TACTAGGACTTAATGTGATC+TGG + chr4.3:14774732-14774751 MS.gene08661:intron 35.0%
TGATATCAACCTGTTCAAGT+TGG - chr4.3:14774158-14774177 None:intergenic 35.0%
TGATGTATAGATCATAGTGG+TGG + chr4.3:14773941-14773960 MS.gene08661:intron 35.0%
TGGGCTACTAATTTCTCTTA+TGG + chr4.3:14774752-14774771 MS.gene08661:intron 35.0%
TTTGGATCGTGTTAGGAAAT+TGG + chr4.3:14773688-14773707 MS.gene08661:CDS 35.0%
! ATACCACATTTGAAACCAGT+TGG - chr4.3:14774824-14774843 None:intergenic 35.0%
! CCGTAGCTGCATATTTTATA+AGG + chr4.3:14774596-14774615 MS.gene08661:intron 35.0%
! GAAAGCATGAAATGAATACG+AGG - chr4.3:14774271-14774290 None:intergenic 35.0%
! GAACGTCTTTCTGTTGATTA+TGG + chr4.3:14773797-14773816 MS.gene08661:CDS 35.0%
! TACCACATTTGAAACCAGTT+GGG - chr4.3:14774823-14774842 None:intergenic 35.0%
!! AACACAGCATTGGTAATTTC+CGG - chr4.3:14774349-14774368 None:intergenic 35.0%
!! CTGTTCAAGTTGGTATAAGT+TGG - chr4.3:14774148-14774167 None:intergenic 35.0%
!! TATAGATCATAGTGGTGGAT+TGG + chr4.3:14773946-14773965 MS.gene08661:intron 35.0%
!!! AACAGTCCTCTTTGTTTTGA+TGG - chr4.3:14774485-14774504 None:intergenic 35.0%
!!! TTTTTGGTTTTCAACGCTGT+TGG + chr4.3:14773737-14773756 MS.gene08661:CDS 35.0%
AACCAAAAACCCTTGAAGAC+CGG - chr4.3:14773726-14773745 None:intergenic 40.0%
AGGCGATCTATGACATTTGT+AGG + chr4.3:14774101-14774120 MS.gene08661:CDS 40.0%
ATCGAACTTGTGATCAATGC+GGG - chr4.3:14774948-14774967 None:intergenic 40.0%
ATCTGTGTTTGGATCGTGTT+AGG + chr4.3:14773681-14773700 MS.gene08661:CDS 40.0%
GATCGAACTTGTGATCAATG+CGG - chr4.3:14774949-14774968 None:intergenic 40.0%
GATCTTGAATGTTGTACCTG+AGG - chr4.3:14773860-14773879 None:intergenic 40.0%
GGAGATCTCTTGATATTGAG+AGG + chr4.3:14774122-14774141 MS.gene08661:CDS 40.0%
GTAGATGGTGAATCCAAGTT+TGG - chr4.3:14773831-14773850 None:intergenic 40.0%
GTCGATAGAACACTGTTGTA+TGG - chr4.3:14774034-14774053 None:intergenic 40.0%
TCCAAGGCATGGGAAATATA+TGG + chr4.3:14774399-14774418 MS.gene08661:CDS 40.0%
TCCTCTAGCGAAATTGTTAG+CGG - chr4.3:14773550-14773569 None:intergenic 40.0%
TCTTGAATGTTGTACCTGAG+GGG - chr4.3:14773858-14773877 None:intergenic 40.0%
TTGGCACCATCAAAACAAAG+AGG + chr4.3:14774476-14774495 MS.gene08661:CDS 40.0%
! ATAACTGTACCGGTCTTCAA+GGG + chr4.3:14773714-14773733 MS.gene08661:CDS 40.0%
! TTTTTGTGGTTCAGTTGGCA+AGG + chr4.3:14773649-14773668 MS.gene08661:intron 40.0%
!! AGGTTTGGGTTCACTTCTTT+TGG + chr4.3:14773775-14773794 MS.gene08661:CDS 40.0%
!! GGACTGTTCAATTTGTTGAC+TGG + chr4.3:14774497-14774516 MS.gene08661:CDS 40.0%
!! TATGAAGAAGTTGGTGCTGA+GGG + chr4.3:14775073-14775092 MS.gene08661:CDS 40.0%
!! TTATGAAGAAGTTGGTGCTG+AGG + chr4.3:14775072-14775091 MS.gene08661:CDS 40.0%
AAGGATGTCAATGCTGCTGT+TGG + chr4.3:14774457-14774476 MS.gene08661:CDS 45.0%
AAGTGAACCCAAACCTGAAC+CGG - chr4.3:14773771-14773790 None:intergenic 45.0%
AATGTTGTACCTGAGGGGAA+GGG - chr4.3:14773853-14773872 None:intergenic 45.0%
ACCTGTTATCTCTGCTGCTA+AGG + chr4.3:14774300-14774319 MS.gene08661:CDS 45.0%
AGAAGATGATGAGGAAGGAG+AGG + chr4.3:14775099-14775118 MS.gene08661:CDS 45.0%
CACTTAGCCATCATACTAGC+AGG - chr4.3:14774376-14774395 None:intergenic 45.0%
CAGTAACAACACTGCTGTTG+CGG + chr4.3:14774913-14774932 MS.gene08661:CDS 45.0%
CTAAGTGTGATCCAAGGCAT+GGG + chr4.3:14774389-14774408 MS.gene08661:CDS 45.0%
CTAGGTTTCAACTGCTGTTG+TGG + chr4.3:14774006-14774025 MS.gene08661:intron 45.0%
GCCATATATTTCCCATGCCT+TGG - chr4.3:14774403-14774422 None:intergenic 45.0%
GTTTGAGCCTGCTAGTATGA+TGG + chr4.3:14774366-14774385 MS.gene08661:CDS 45.0%
TCTTCTTGAGCACACTGATG+TGG + chr4.3:14774060-14774079 MS.gene08661:CDS 45.0%
TGATGGCTAAGTGTGATCCA+AGG + chr4.3:14774383-14774402 MS.gene08661:CDS 45.0%
! GATAACTGTACCGGTCTTCA+AGG + chr4.3:14773713-14773732 MS.gene08661:CDS 45.0%
! TACCGGTCTTCAAGGGTTTT+TGG + chr4.3:14773721-14773740 MS.gene08661:CDS 45.0%
! TGCCCAACTGGTTTCAAATG+TGG + chr4.3:14774818-14774837 MS.gene08661:CDS 45.0%
!! ACAGCAGCATTGACATCCTT+TGG - chr4.3:14774457-14774476 None:intergenic 45.0%
!! CCTTTGGAACAACATCACCA+CGG - chr4.3:14774441-14774460 None:intergenic 45.0%
!! TTGGTTTTCAACGCTGTTGG+TGG + chr4.3:14773740-14773759 MS.gene08661:CDS 45.0%
AAACCTCAACGAGGTGGTGA+GGG - chr4.3:14774194-14774213 None:intergenic 50.0%
ACCACCTCGTTGAGGTTTGA+TGG + chr4.3:14774196-14774215 MS.gene08661:CDS 50.0%
ACCATCAAACCTCAACGAGG+TGG - chr4.3:14774200-14774219 None:intergenic 50.0%
ACCGACATACCAGTGGACAA+AGG - chr4.3:14774990-14775009 None:intergenic 50.0%
ACGAGGATACGGCACAAGAT+TGG - chr4.3:14774254-14774273 None:intergenic 50.0%
AGCACCATCAAACCTCAACG+AGG - chr4.3:14774203-14774222 None:intergenic 50.0%
AGCAGGCTCAAACACAGCAT+TGG - chr4.3:14774359-14774378 None:intergenic 50.0%
ATGTATGACAGGTGCCCAAC+TGG + chr4.3:14774806-14774825 MS.gene08661:intron 50.0%
CACCCTGAACAACTCATCTC+CGG + chr4.3:14773513-14773532 MS.gene08661:CDS 50.0%
CAGCTCTTTGCACCTTAGCA+AGG - chr4.3:14774883-14774902 None:intergenic 50.0%
CGAGAGCAGCAAGATCTTCA+CGG - chr4.3:14775045-14775064 None:intergenic 50.0%
GAAGAGTTGTCGGTAGGTAC+CGG - chr4.3:14773493-14773512 None:intergenic 50.0%
GAATGTTGTACCTGAGGGGA+AGG - chr4.3:14773854-14773873 None:intergenic 50.0%
GAGAGCAGCAAGATCTTCAC+GGG - chr4.3:14775044-14775063 None:intergenic 50.0%
GCCGCTAACAATTTCGCTAG+AGG + chr4.3:14773546-14773565 MS.gene08661:CDS 50.0%
GCCTTAGCAGCAGAGATAAC+AGG - chr4.3:14774304-14774323 None:intergenic 50.0%
GCCTTTGTCCACTGGTATGT+CGG + chr4.3:14774986-14775005 MS.gene08661:CDS 50.0%
GCTAAGTGTGATCCAAGGCA+TGG + chr4.3:14774388-14774407 MS.gene08661:CDS 50.0%
GGAGCAGAAGATGATGAGGA+AGG + chr4.3:14775094-14775113 MS.gene08661:CDS 50.0%
GTTCAGGGTGGAAGAGTTGT+CGG - chr4.3:14773503-14773522 None:intergenic 50.0%
TAACAACACTGCTGTTGCGG+AGG + chr4.3:14774916-14774935 MS.gene08661:CDS 50.0%
TCATGAGCAGCTATCTGTGC+CGG + chr4.3:14774327-14774346 MS.gene08661:CDS 50.0%
TCTTGAGCACACTGATGTGG+CGG + chr4.3:14774063-14774082 MS.gene08661:CDS 50.0%
TGAGGGAGCAGAAGATGATG+AGG + chr4.3:14775090-14775109 MS.gene08661:CDS 50.0%
TGCCGGAGATGAGTTGTTCA+GGG - chr4.3:14773518-14773537 None:intergenic 50.0%
TTCGCTAGAGGACACTACAC+TGG + chr4.3:14773558-14773577 MS.gene08661:CDS 50.0%
TTGCCGGAGATGAGTTGTTC+AGG - chr4.3:14773519-14773538 None:intergenic 50.0%
! CCGTGGTGATGTTGTTCCAA+AGG + chr4.3:14774438-14774457 MS.gene08661:CDS 50.0%
! GATACGGCACAAGATTGGTC+TGG - chr4.3:14774249-14774268 None:intergenic 50.0%
!! GCTTGCTGTTTGATGTACCG+TGG + chr4.3:14774421-14774440 MS.gene08661:CDS 50.0%
!! GTTTTCAACGCTGTTGGTGG+TGG + chr4.3:14773743-14773762 MS.gene08661:CDS 50.0%
AGGGTGGAAGAGTTGTCGGT+AGG - chr4.3:14773499-14773518 None:intergenic 55.0%
CAAACCTCAACGAGGTGGTG+AGG - chr4.3:14774195-14774214 None:intergenic 55.0%
CAGCCTCCTTCAGTTGTTCC+TGG + chr4.3:14774851-14774870 MS.gene08661:CDS 55.0%
CCAAGAGAGCCTTTGTCCAC+TGG + chr4.3:14774978-14774997 MS.gene08661:CDS 55.0%
CCAGTGGACAAAGGCTCTCT+TGG - chr4.3:14774981-14775000 None:intergenic 55.0%
CCTCCTTCAGTTGTTCCTGG+CGG + chr4.3:14774854-14774873 MS.gene08661:CDS 55.0%
CGGAGATGAGTTGTTCAGGG+TGG - chr4.3:14773515-14773534 None:intergenic 55.0%
GGCGGTGCTCTTGGATAATG+AGG + chr4.3:14774081-14774100 MS.gene08661:CDS 55.0%
GTCCACTGGTATGTCGGTGA+GGG + chr4.3:14774992-14775011 MS.gene08661:CDS 55.0%
GTTAGCGGCGTCTTCTTTGC+CGG - chr4.3:14773535-14773554 None:intergenic 55.0%
TACCTGAGGGGAAGGGTAGA+TGG - chr4.3:14773846-14773865 None:intergenic 55.0%
TCACCGCCAGGAACAACTGA+AGG - chr4.3:14774860-14774879 None:intergenic 55.0%
TGTCCACTGGTATGTCGGTG+AGG + chr4.3:14774991-14775010 MS.gene08661:CDS 55.0%
! GGTGGAACCGGTTCAGGTTT+GGG + chr4.3:14773761-14773780 MS.gene08661:CDS 55.0%
! TCGGTGAGGGCATGGAAGAA+GGG + chr4.3:14775005-14775024 MS.gene08661:CDS 55.0%
! TGGTGGAACCGGTTCAGGTT+TGG + chr4.3:14773760-14773779 MS.gene08661:CDS 55.0%
!! AACGCTGTTGGTGGTGGAAC+CGG + chr4.3:14773749-14773768 MS.gene08661:CDS 55.0%
ACCTTAGCAAGGTCACCGCC+AGG - chr4.3:14774872-14774891 None:intergenic 60.0%
CACCATCTACCCTTCCCCTC+AGG + chr4.3:14773841-14773860 MS.gene08661:CDS 60.0%
CACTGATGTGGCGGTGCTCT+TGG + chr4.3:14774072-14774091 MS.gene08661:CDS 60.0%
CATCCCTCACCACCTCGTTG+AGG + chr4.3:14774188-14774207 MS.gene08661:CDS 60.0%
CCGCCAGGAACAACTGAAGG+AGG - chr4.3:14774857-14774876 None:intergenic 60.0%
CTGGTATGTCGGTGAGGGCA+TGG + chr4.3:14774997-14775016 MS.gene08661:CDS 60.0%
TCCTGGCGGTGACCTTGCTA+AGG + chr4.3:14774868-14774887 MS.gene08661:CDS 60.0%
TGCCCTCACCGACATACCAG+TGG - chr4.3:14774997-14775016 None:intergenic 60.0%
! CGGTGAGGGCATGGAAGAAG+GGG + chr4.3:14775006-14775025 MS.gene08661:CDS 60.0%
! GTCGGTGAGGGCATGGAAGA+AGG + chr4.3:14775004-14775023 MS.gene08661:CDS 60.0%
!! GTTGGTGGTGGAACCGGTTC+AGG + chr4.3:14773755-14773774 MS.gene08661:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 14773478 14775129 14773478 ID=MS.gene08661
chr4.3 mRNA 14773478 14775129 14773478 ID=MS.gene08661.t1;Parent=MS.gene08661
chr4.3 exon 14773478 14773579 14773478 ID=MS.gene08661.t1.exon1;Parent=MS.gene08661.t1
chr4.3 CDS 14773478 14773579 14773478 ID=cds.MS.gene08661.t1;Parent=MS.gene08661.t1
chr4.3 exon 14773671 14773862 14773671 ID=MS.gene08661.t1.exon2;Parent=MS.gene08661.t1
chr4.3 CDS 14773671 14773862 14773671 ID=cds.MS.gene08661.t1;Parent=MS.gene08661.t1
chr4.3 exon 14774010 14774518 14774010 ID=MS.gene08661.t1.exon3;Parent=MS.gene08661.t1
chr4.3 CDS 14774010 14774518 14774010 ID=cds.MS.gene08661.t1;Parent=MS.gene08661.t1
chr4.3 exon 14774817 14775129 14774817 ID=MS.gene08661.t1.exon4;Parent=MS.gene08661.t1
chr4.3 CDS 14774817 14775129 14774817 ID=cds.MS.gene08661.t1;Parent=MS.gene08661.t1
Gene Sequence

>MS.gene08661

ATGAAGTTCGTTCCGGTACCTACCGACAACTCTTCCACCCTGAACAACTCATCTCCGGCAAAGAAGACGCCGCTAACAATTTCGCTAGAGGACACTACACTGGTCAGTTTCTTTTTCAAACCCTAACCCTAATTTCGAGATTTCTTGCTTTTTATTGATTTTTTGTTCTTTTTTTTGTGGTTCAGTTGGCAAGGAAATTGTAGATCTGTGTTTGGATCGTGTTAGGAAATTGGCTGATAACTGTACCGGTCTTCAAGGGTTTTTGGTTTTCAACGCTGTTGGTGGTGGAACCGGTTCAGGTTTGGGTTCACTTCTTTTGGAACGTCTTTCTGTTGATTATGGAAAGAAATCCAAACTTGGATTCACCATCTACCCTTCCCCTCAGGTACAACATTCAAGATCTTTAATACTGTTATTGTTATTGCAATGTTTAAATCATGTTGATGTAAATATTGGTGTTGATTGATGTATAGATCATAGTGGTGGATTGGTTTTTCTGTTTGTAATGGTGAATTGTTATTTTTGGATCTAGGTTTCAACTGCTGTTGTGGAGCCATACAACAGTGTTCTATCGACACATTCTCTTCTTGAGCACACTGATGTGGCGGTGCTCTTGGATAATGAGGCGATCTATGACATTTGTAGGAGATCTCTTGATATTGAGAGGCCAACTTATACCAACTTGAACAGGTTGATATCACAGATCATATCATCCCTCACCACCTCGTTGAGGTTTGATGGTGCTATCAATGTTGATATTACTGAGTTCCAGACCAATCTTGTGCCGTATCCTCGTATTCATTTCATGCTTTCGTCATATGCACCTGTTATCTCTGCTGCTAAGGCTTATCATGAGCAGCTATCTGTGCCGGAAATTACCAATGCTGTGTTTGAGCCTGCTAGTATGATGGCTAAGTGTGATCCAAGGCATGGGAAATATATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTTCCAAAGGATGTCAATGCTGCTGTTGGCACCATCAAAACAAAGAGGACTGTTCAATTTGTTGACTGGTAACGACTCTTTCAATAACTATTTGTAGAATGACGGTGTTGTCTCGCATTGCATGTTCTGATCTGTTTAGAATTATCCGTAGCTGCATATTTTATAAGGGTAGATAATTTGGAAGATAGCATAATAATTAAGAGCTTGAAAAACTATAGCAACTAATAATACTGATTTGAAATAATCAAATGGTTTTTCTTTAGCAACAATTCACAACTTGTTACTAGGACTTAATGTGATCTGGGCTACTAATTTCTCTTATGGTGATATTCTCTATAACATTGTTCATATTATAATGTATGACAGGTGCCCAACTGGTTTCAAATGTGGTATCAACTATCAGCCTCCTTCAGTTGTTCCTGGCGGTGACCTTGCTAAGGTGCAAAGAGCTGTGTGTATGATCAGTAACAACACTGCTGTTGCGGAGGTCTTCTCCCGCATTGATCACAAGTTCGATCTGATGTATGCCAAGAGAGCCTTTGTCCACTGGTATGTCGGTGAGGGCATGGAAGAAGGGGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCTCTCGAGAAAGATTATGAAGAAGTTGGTGCTGAGGGAGCAGAAGATGATGAGGAAGGAGAGGATTATTGA
Protein sequence

>MS.gene08661.t1

MKFVPVPTDNSSTLNNSSPAKKTPLTISLEDTTLEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGAEDDEEGEDY