Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08676.t1 | RHN60693.1 | 92.3 | 310 | 24 | 0 | 1 | 310 | 243 | 552 | 2.60E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08676.t1 | Q9SVG7 | 52.7 | 313 | 142 | 3 | 1 | 310 | 217 | 526 | 1.8e-93 | 344.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08676.t1 | A0A072ULR6 | 92.3 | 310 | 24 | 0 | 1 | 310 | 214 | 523 | 1.9e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050100 | MS.gene08676 | 0.867036 | 1.84E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08676.t1 | MTR_4g057990 | 92.258 | 310 | 24 | 0 | 1 | 310 | 214 | 523 | 0.0 | 606 |
| MS.gene08676.t1 | MTR_4g091190 | 85.161 | 310 | 45 | 1 | 1 | 309 | 219 | 528 | 0.0 | 558 |
| MS.gene08676.t1 | MTR_4g091200 | 82.109 | 313 | 53 | 1 | 1 | 310 | 215 | 527 | 0.0 | 543 |
| MS.gene08676.t1 | MTR_6g017205 | 82.692 | 312 | 51 | 1 | 1 | 309 | 215 | 526 | 0.0 | 539 |
| MS.gene08676.t1 | MTR_2g023590 | 82.051 | 312 | 54 | 2 | 1 | 310 | 157 | 468 | 0.0 | 539 |
| MS.gene08676.t1 | MTR_4g088355 | 82.109 | 313 | 53 | 1 | 1 | 310 | 222 | 534 | 0.0 | 538 |
| MS.gene08676.t1 | MTR_4g091170 | 76.452 | 310 | 52 | 2 | 3 | 309 | 251 | 542 | 3.07e-174 | 494 |
| MS.gene08676.t1 | MTR_4g091150 | 61.538 | 312 | 115 | 3 | 1 | 307 | 227 | 538 | 1.18e-137 | 400 |
| MS.gene08676.t1 | MTR_2g031590 | 48.571 | 315 | 154 | 2 | 1 | 308 | 218 | 531 | 4.12e-109 | 327 |
| MS.gene08676.t1 | MTR_2g031560 | 51.447 | 311 | 145 | 3 | 1 | 307 | 213 | 521 | 7.75e-109 | 327 |
| MS.gene08676.t1 | MTR_4g094498 | 49.191 | 309 | 154 | 3 | 1 | 308 | 227 | 533 | 2.57e-103 | 313 |
| MS.gene08676.t1 | MTR_4g094495 | 47.170 | 318 | 158 | 4 | 1 | 309 | 224 | 540 | 4.84e-95 | 291 |
| MS.gene08676.t1 | MTR_4g094488 | 48.287 | 321 | 150 | 5 | 1 | 309 | 221 | 537 | 5.66e-95 | 291 |
| MS.gene08676.t1 | MTR_4g094492 | 46.835 | 316 | 159 | 4 | 1 | 308 | 221 | 535 | 3.67e-94 | 289 |
| MS.gene08676.t1 | MTR_4g094418 | 47.812 | 320 | 156 | 4 | 1 | 310 | 118 | 436 | 3.77e-94 | 291 |
| MS.gene08676.t1 | MTR_4g094520 | 47.588 | 311 | 157 | 4 | 1 | 308 | 224 | 531 | 6.72e-94 | 288 |
| MS.gene08676.t1 | MTR_3g009820 | 45.130 | 308 | 166 | 3 | 1 | 307 | 215 | 520 | 7.25e-94 | 288 |
| MS.gene08676.t1 | MTR_3g009760 | 45.659 | 311 | 160 | 4 | 1 | 307 | 215 | 520 | 1.75e-93 | 287 |
| MS.gene08676.t1 | MTR_3g009880 | 46.302 | 311 | 158 | 4 | 1 | 307 | 213 | 518 | 9.98e-93 | 285 |
| MS.gene08676.t1 | MTR_4g094480 | 45.886 | 316 | 163 | 3 | 1 | 309 | 221 | 535 | 2.33e-92 | 284 |
| MS.gene08676.t1 | MTR_4g094478 | 46.984 | 315 | 159 | 3 | 1 | 308 | 221 | 534 | 1.61e-91 | 282 |
| MS.gene08676.t1 | MTR_2g031420 | 47.267 | 311 | 154 | 4 | 1 | 307 | 221 | 525 | 3.64e-90 | 278 |
| MS.gene08676.t1 | MTR_2g031390 | 46.302 | 311 | 160 | 4 | 1 | 307 | 220 | 527 | 5.64e-89 | 276 |
| MS.gene08676.t1 | MTR_2g031460 | 45.806 | 310 | 158 | 4 | 1 | 306 | 221 | 524 | 2.08e-88 | 274 |
| MS.gene08676.t1 | MTR_2g031490 | 45.541 | 314 | 162 | 4 | 1 | 307 | 225 | 536 | 4.02e-88 | 273 |
| MS.gene08676.t1 | MTR_2g031510 | 43.810 | 315 | 166 | 5 | 1 | 307 | 227 | 538 | 1.30e-85 | 267 |
| MS.gene08676.t1 | MTR_4g094515 | 48.089 | 314 | 153 | 6 | 1 | 308 | 840 | 1149 | 8.56e-85 | 276 |
| MS.gene08676.t1 | MTR_4g094515 | 46.519 | 316 | 159 | 5 | 1 | 309 | 228 | 540 | 7.12e-83 | 271 |
| MS.gene08676.t1 | MTR_4g094518 | 44.586 | 314 | 161 | 5 | 1 | 307 | 221 | 528 | 3.23e-79 | 250 |
| MS.gene08676.t1 | MTR_3g009850 | 44.196 | 224 | 122 | 3 | 85 | 307 | 5 | 226 | 1.87e-60 | 192 |
| MS.gene08676.t1 | MTR_1g076830 | 34.713 | 314 | 192 | 6 | 1 | 306 | 224 | 532 | 3.04e-51 | 177 |
| MS.gene08676.t1 | MTR_2g031600 | 48.718 | 156 | 79 | 1 | 153 | 308 | 245 | 399 | 3.29e-49 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08676.t1 | AT4G20800 | 52.716 | 313 | 142 | 3 | 1 | 310 | 217 | 526 | 2.19e-115 | 343 |
| MS.gene08676.t1 | AT1G26420 | 51.447 | 311 | 142 | 5 | 1 | 307 | 218 | 523 | 7.47e-109 | 327 |
| MS.gene08676.t1 | AT1G26380 | 51.447 | 311 | 142 | 5 | 1 | 307 | 218 | 523 | 1.66e-107 | 323 |
| MS.gene08676.t1 | AT1G30720 | 49.038 | 312 | 152 | 3 | 1 | 309 | 219 | 526 | 1.06e-103 | 313 |
| MS.gene08676.t1 | AT1G26390 | 50.641 | 312 | 145 | 5 | 1 | 307 | 218 | 525 | 2.06e-101 | 307 |
| MS.gene08676.t1 | AT1G26400 | 48.243 | 313 | 153 | 6 | 1 | 309 | 218 | 525 | 5.06e-101 | 306 |
| MS.gene08676.t1 | AT1G34575 | 50.323 | 310 | 144 | 5 | 1 | 307 | 220 | 522 | 1.28e-100 | 305 |
| MS.gene08676.t1 | AT1G30730 | 47.436 | 312 | 157 | 3 | 1 | 309 | 218 | 525 | 1.67e-100 | 305 |
| MS.gene08676.t1 | AT1G26410 | 47.910 | 311 | 153 | 6 | 1 | 307 | 242 | 547 | 1.91e-97 | 298 |
| MS.gene08676.t1 | AT1G30710 | 47.452 | 314 | 154 | 5 | 1 | 310 | 223 | 529 | 1.15e-94 | 290 |
| MS.gene08676.t1 | AT1G30700 | 46.795 | 312 | 156 | 5 | 1 | 307 | 218 | 524 | 1.33e-92 | 285 |
| MS.gene08676.t1 | AT4G20860 | 46.429 | 308 | 162 | 3 | 1 | 307 | 222 | 527 | 2.49e-92 | 284 |
| MS.gene08676.t1 | AT5G44360 | 47.557 | 307 | 156 | 3 | 1 | 307 | 227 | 528 | 2.68e-92 | 284 |
| MS.gene08676.t1 | AT5G44360 | 47.557 | 307 | 156 | 3 | 1 | 307 | 243 | 544 | 3.03e-92 | 284 |
| MS.gene08676.t1 | AT2G34810 | 47.134 | 314 | 158 | 4 | 1 | 307 | 225 | 537 | 1.04e-91 | 283 |
| MS.gene08676.t1 | AT5G44380 | 47.249 | 309 | 160 | 3 | 1 | 307 | 230 | 537 | 1.67e-91 | 282 |
| MS.gene08676.t1 | AT5G44380 | 47.249 | 309 | 160 | 3 | 1 | 307 | 270 | 577 | 3.81e-91 | 282 |
| MS.gene08676.t1 | AT1G30760 | 47.115 | 312 | 154 | 4 | 1 | 308 | 245 | 549 | 1.11e-90 | 280 |
| MS.gene08676.t1 | AT1G30760 | 47.115 | 312 | 154 | 4 | 1 | 308 | 227 | 531 | 1.44e-90 | 280 |
| MS.gene08676.t1 | AT5G44440 | 44.231 | 312 | 165 | 4 | 1 | 307 | 220 | 527 | 1.74e-86 | 269 |
| MS.gene08676.t1 | AT5G44440 | 44.231 | 312 | 165 | 4 | 1 | 307 | 290 | 597 | 1.48e-85 | 268 |
| MS.gene08676.t1 | AT5G44400 | 46.774 | 310 | 160 | 5 | 1 | 307 | 227 | 534 | 1.55e-85 | 267 |
| MS.gene08676.t1 | AT1G01980 | 46.474 | 312 | 159 | 6 | 1 | 308 | 226 | 533 | 1.88e-85 | 266 |
| MS.gene08676.t1 | AT1G11770 | 43.408 | 311 | 170 | 5 | 1 | 308 | 221 | 528 | 3.72e-84 | 263 |
| MS.gene08676.t1 | AT4G20840 | 45.192 | 312 | 163 | 6 | 1 | 308 | 227 | 534 | 1.20e-83 | 262 |
| MS.gene08676.t1 | AT2G34790 | 46.006 | 313 | 158 | 4 | 1 | 309 | 225 | 530 | 3.41e-83 | 261 |
| MS.gene08676.t1 | AT4G20820 | 42.718 | 309 | 166 | 5 | 1 | 307 | 225 | 524 | 3.04e-82 | 258 |
| MS.gene08676.t1 | AT5G44390 | 44.872 | 312 | 167 | 4 | 1 | 308 | 229 | 539 | 3.15e-82 | 258 |
| MS.gene08676.t1 | AT5G44410 | 44.089 | 313 | 160 | 7 | 1 | 307 | 224 | 527 | 1.27e-77 | 246 |
| MS.gene08676.t1 | AT4G20830 | 44.551 | 312 | 165 | 6 | 1 | 308 | 228 | 535 | 4.01e-73 | 234 |
| MS.gene08676.t1 | AT4G20830 | 44.551 | 312 | 165 | 6 | 1 | 308 | 228 | 535 | 1.01e-72 | 234 |
| MS.gene08676.t1 | AT1G30740 | 42.271 | 317 | 165 | 7 | 1 | 308 | 220 | 527 | 1.63e-70 | 228 |
| MS.gene08676.t1 | AT1G30740 | 42.271 | 317 | 165 | 7 | 1 | 308 | 223 | 530 | 1.67e-70 | 228 |
Find 45 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATCTTTATGCAATTT+TGG | 0.129047 | 4.4:+45274921 | None:intergenic |
| AATGAAAGTTTCCCTGAATT+AGG | 0.185400 | 4.4:-45274795 | MS.gene08676:CDS |
| GATTGACCTTTGATATAAAT+TGG | 0.202133 | 4.4:+45274657 | None:intergenic |
| TAAATTGGTTCAGGATCTTT+TGG | 0.283126 | 4.4:+45274672 | None:intergenic |
| GGTGGTGGTGGTGCTAGTTT+TGG | 0.331271 | 4.4:-45275065 | MS.gene08676:CDS |
| TGTTACATTACTTGGATGAT+TGG | 0.334469 | 4.4:+45274317 | None:intergenic |
| GTAGTACAAGTTAGTTTCAT+TGG | 0.337552 | 4.4:-45274858 | MS.gene08676:CDS |
| ATGAAAGTTTCCCTGAATTA+GGG | 0.357920 | 4.4:-45274794 | MS.gene08676:CDS |
| CCTTTGATATAAATTGGTTC+AGG | 0.363583 | 4.4:+45274663 | None:intergenic |
| TCTGTCTTGGAAACTCAAAT+TGG | 0.367591 | 4.4:-45275036 | MS.gene08676:CDS |
| AAGAAGTTATAAAATATATA+TGG | 0.379271 | 4.4:-45274608 | MS.gene08676:CDS |
| AACTACAGGGATGCTGATAT+TGG | 0.381607 | 4.4:-45274342 | MS.gene08676:CDS |
| ATGGACATTGCTAGAACATA+TGG | 0.390306 | 4.4:-45274291 | MS.gene08676:CDS |
| CAGTTTAATGTTGTTCAAAT+CGG | 0.395011 | 4.4:-45274888 | MS.gene08676:CDS |
| TCTTCCATCCTTCCACCATA+AGG | 0.426399 | 4.4:+45274543 | None:intergenic |
| ATGATGCAATGGAATCCTTA+TGG | 0.430429 | 4.4:-45274558 | MS.gene08676:CDS |
| TTTCCTGCTATATGAGGAAA+TGG | 0.441720 | 4.4:+45274501 | None:intergenic |
| TGTTGTTCAAATCGGTCAAA+AGG | 0.450491 | 4.4:-45274880 | MS.gene08676:CDS |
| ATTAGTTAGTGTGAAAACTA+AGG | 0.459890 | 4.4:-45274238 | MS.gene08676:CDS |
| GGGAGGCATTCCTCAACTAC+AGG | 0.464896 | 4.4:-45274356 | MS.gene08676:CDS |
| CAATTGATGTTGTTTACAAA+TGG | 0.468194 | 4.4:-45274956 | MS.gene08676:CDS |
| TACTCCTCTTGAAGTACTGT+TGG | 0.474700 | 4.4:-45274700 | MS.gene08676:CDS |
| AACAAGTTTCCTGCTATATG+AGG | 0.476426 | 4.4:+45274495 | None:intergenic |
| ACTTCAAGAGGAGTACCAAT+TGG | 0.491784 | 4.4:+45274708 | None:intergenic |
| CTCGGTGAATTTGAAACATA+GGG | 0.492724 | 4.4:+45274378 | None:intergenic |
| TTGAGCAAAGCATACCTACT+AGG | 0.496884 | 4.4:-45274191 | MS.gene08676:CDS |
| CCTCGGTGAATTTGAAACAT+AGG | 0.513555 | 4.4:+45274377 | None:intergenic |
| TGGGCTATAAGAGGTGGTGG+TGG | 0.518497 | 4.4:-45275077 | MS.gene08676:CDS |
| ACACCATTTCCTCATATAGC+AGG | 0.535413 | 4.4:-45274504 | MS.gene08676:CDS |
| ATATGGCAATTGATGATTGA+AGG | 0.549820 | 4.4:-45274591 | MS.gene08676:CDS |
| GAATCCTTATGGTGGAAGGA+TGG | 0.549881 | 4.4:-45274547 | MS.gene08676:CDS |
| CCTGAACCAATTTATATCAA+AGG | 0.553199 | 4.4:-45274663 | MS.gene08676:CDS |
| TATCAGCATCCCTGTAGTTG+AGG | 0.567869 | 4.4:+45274346 | None:intergenic |
| GTGAAACTTTGATGATGCAA+TGG | 0.569948 | 4.4:-45274569 | MS.gene08676:CDS |
| TGTTTCAAATTCACCGAGGG+AGG | 0.572681 | 4.4:-45274373 | MS.gene08676:CDS |
| GGGAAACTTTCATTCACCAA+AGG | 0.583242 | 4.4:+45274804 | None:intergenic |
| TAGTTGAGGAATGCCTCCCT+CGG | 0.585116 | 4.4:+45274360 | None:intergenic |
| CTATGTTTCAAATTCACCGA+GGG | 0.622139 | 4.4:-45274376 | MS.gene08676:CDS |
| TGAGGAAATGGTGTTTCTGA+TGG | 0.622761 | 4.4:+45274513 | None:intergenic |
| AAAATAGTGGAATTAACCCA+AGG | 0.622958 | 4.4:+45274744 | None:intergenic |
| TCATCCAACAGTACTTCAAG+AGG | 0.635503 | 4.4:+45274696 | None:intergenic |
| GGAGGCATTCCTCAACTACA+GGG | 0.651365 | 4.4:-45274355 | MS.gene08676:CDS |
| AATGGAATCCTTATGGTGGA+AGG | 0.657608 | 4.4:-45274551 | MS.gene08676:CDS |
| ATGCAATGGAATCCTTATGG+TGG | 0.675072 | 4.4:-45274555 | MS.gene08676:CDS |
| CCTATGTTTCAAATTCACCG+AGG | 0.745117 | 4.4:-45274377 | MS.gene08676:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTTATAAAATATATA+TGG | - | chr4.4:45274672-45274691 | MS.gene08676:CDS | 10.0% |
| !!! | ATATATTTTATAACTTCTTT+TGG | + | chr4.4:45274671-45274690 | None:intergenic | 10.0% |
| !!! | TGATTTTGTATTATAATACT+TGG | - | chr4.4:45274810-45274829 | MS.gene08676:CDS | 15.0% |
| !! | TCAAATCTAAAAAAATTCTC+AGG | + | chr4.4:45275073-45275092 | None:intergenic | 20.0% |
| !!! | AAAAGATCTTTATGCAATTT+TGG | + | chr4.4:45274362-45274381 | None:intergenic | 20.0% |
| !!! | TTTATAACTTCTTTTGGAAT+AGG | + | chr4.4:45274665-45274684 | None:intergenic | 20.0% |
| ! | ACATTAAAAACAGTAACTTG+TGG | + | chr4.4:45274281-45274300 | None:intergenic | 25.0% |
| ! | ATTAGTTAGTGTGAAAACTA+AGG | - | chr4.4:45275042-45275061 | MS.gene08676:CDS | 25.0% |
| ! | CAGTTTAATGTTGTTCAAAT+CGG | - | chr4.4:45274392-45274411 | MS.gene08676:CDS | 25.0% |
| ! | CTTATCATACCAAAAAATAG+TGG | + | chr4.4:45274552-45274571 | None:intergenic | 25.0% |
| ! | GATTGACCTTTGATATAAAT+TGG | + | chr4.4:45274626-45274645 | None:intergenic | 25.0% |
| ! | TCCAAGTAATGTAACAAAAA+TGG | - | chr4.4:45274970-45274989 | MS.gene08676:CDS | 25.0% |
| !! | AATTGAAAGACTTTTACCTT+TGG | - | chr4.4:45274460-45274479 | MS.gene08676:CDS | 25.0% |
| !! | AGTTTCATTGGTCAATTTTT+GGG | - | chr4.4:45274434-45274453 | MS.gene08676:CDS | 25.0% |
| !! | ATTAAAAACAGTAACTTGTG+GGG | + | chr4.4:45274279-45274298 | None:intergenic | 25.0% |
| !! | CAATTGATGTTGTTTACAAA+TGG | - | chr4.4:45274324-45274343 | MS.gene08676:CDS | 25.0% |
| !! | CATTAAAAACAGTAACTTGT+GGG | + | chr4.4:45274280-45274299 | None:intergenic | 25.0% |
| !! | TAGTTTCATTGGTCAATTTT+TGG | - | chr4.4:45274433-45274452 | MS.gene08676:CDS | 25.0% |
| !!! | TATGGAAGCAAGTTTTTTAA+AGG | - | chr4.4:45275007-45275026 | MS.gene08676:CDS | 25.0% |
| !!! | TCCATTTTTGTTACATTACT+TGG | + | chr4.4:45274974-45274993 | None:intergenic | 25.0% |
| !!! | TTACTGTTTTTAATGTGAAG+AGG | - | chr4.4:45274285-45274304 | MS.gene08676:CDS | 25.0% |
| AATGAAAGTTTCCCTGAATT+AGG | - | chr4.4:45274485-45274504 | MS.gene08676:CDS | 30.0% | |
| ATGAAAGTTTCCCTGAATTA+GGG | - | chr4.4:45274486-45274505 | MS.gene08676:CDS | 30.0% | |
| CCTGAACCAATTTATATCAA+AGG | - | chr4.4:45274617-45274636 | MS.gene08676:CDS | 30.0% | |
| TGTTACATTACTTGGATGAT+TGG | + | chr4.4:45274966-45274985 | None:intergenic | 30.0% | |
| ! | AAAATAGTGGAATTAACCCA+AGG | + | chr4.4:45274539-45274558 | None:intergenic | 30.0% |
| ! | AACGTCATGTGAATTTTTCA+AGG | - | chr4.4:45274858-45274877 | MS.gene08676:CDS | 30.0% |
| ! | ATATGGCAATTGATGATTGA+AGG | - | chr4.4:45274689-45274708 | MS.gene08676:CDS | 30.0% |
| ! | CCTTTGATATAAATTGGTTC+AGG | + | chr4.4:45274620-45274639 | None:intergenic | 30.0% |
| ! | GTAGTACAAGTTAGTTTCAT+TGG | - | chr4.4:45274422-45274441 | MS.gene08676:CDS | 30.0% |
| ! | GTTTCATTGGTCAATTTTTG+GGG | - | chr4.4:45274435-45274454 | MS.gene08676:CDS | 30.0% |
| ! | TTTTCTTCAACCCTAATTCA+GGG | + | chr4.4:45274499-45274518 | None:intergenic | 30.0% |
| ! | TTTTGGTATGATAAGCCAAT+TGG | - | chr4.4:45274557-45274576 | MS.gene08676:CDS | 30.0% |
| !! | TAAATTGGTTCAGGATCTTT+TGG | + | chr4.4:45274611-45274630 | None:intergenic | 30.0% |
| !!! | GGGTTAATTCCACTATTTTT+TGG | - | chr4.4:45274540-45274559 | MS.gene08676:CDS | 30.0% |
| AACAAGTTTCCTGCTATATG+AGG | + | chr4.4:45274788-45274807 | None:intergenic | 35.0% | |
| ATGATGCAATGGAATCCTTA+TGG | - | chr4.4:45274722-45274741 | MS.gene08676:CDS | 35.0% | |
| ATGGACATTGCTAGAACATA+TGG | - | chr4.4:45274989-45275008 | MS.gene08676:CDS | 35.0% | |
| CTATGTTTCAAATTCACCGA+GGG | - | chr4.4:45274904-45274923 | MS.gene08676:CDS | 35.0% | |
| TCTGTCTTGGAAACTCAAAT+TGG | - | chr4.4:45274244-45274263 | MS.gene08676:CDS | 35.0% | |
| TGTTGTTCAAATCGGTCAAA+AGG | - | chr4.4:45274400-45274419 | MS.gene08676:CDS | 35.0% | |
| TTTCCTGCTATATGAGGAAA+TGG | + | chr4.4:45274782-45274801 | None:intergenic | 35.0% | |
| ! | CTCGGTGAATTTGAAACATA+GGG | + | chr4.4:45274905-45274924 | None:intergenic | 35.0% |
| ! | CTTTTCTTCAACCCTAATTC+AGG | + | chr4.4:45274500-45274519 | None:intergenic | 35.0% |
| !! | GTGAAACTTTGATGATGCAA+TGG | - | chr4.4:45274711-45274730 | MS.gene08676:CDS | 35.0% |
| !! | TGATTGCTTTTCAATGCCTT+GGG | - | chr4.4:45274520-45274539 | MS.gene08676:CDS | 35.0% |
| !!! | GATCTTTTTTGGGCTATAAG+AGG | - | chr4.4:45274194-45274213 | MS.gene08676:CDS | 35.0% |
| !!! | GTTTTGGTGTTATTCTGTCT+TGG | - | chr4.4:45274231-45274250 | MS.gene08676:CDS | 35.0% |
| AACTACAGGGATGCTGATAT+TGG | - | chr4.4:45274938-45274957 | MS.gene08676:CDS | 40.0% | |
| ACACCATTTCCTCATATAGC+AGG | - | chr4.4:45274776-45274795 | MS.gene08676:CDS | 40.0% | |
| ATGCAATGGAATCCTTATGG+TGG | - | chr4.4:45274725-45274744 | MS.gene08676:CDS | 40.0% | |
| CCTATGTTTCAAATTCACCG+AGG | - | chr4.4:45274903-45274922 | MS.gene08676:CDS | 40.0% | |
| GGGAAACTTTCATTCACCAA+AGG | + | chr4.4:45274479-45274498 | None:intergenic | 40.0% | |
| TCATCCAACAGTACTTCAAG+AGG | + | chr4.4:45274587-45274606 | None:intergenic | 40.0% | |
| TTGAGCAAAGCATACCTACT+AGG | - | chr4.4:45275089-45275108 | MS.gene08676:CDS | 40.0% | |
| ! | AATGGAATCCTTATGGTGGA+AGG | - | chr4.4:45274729-45274748 | MS.gene08676:CDS | 40.0% |
| ! | CCTCGGTGAATTTGAAACAT+AGG | + | chr4.4:45274906-45274925 | None:intergenic | 40.0% |
| ! | TGAGGAAATGGTGTTTCTGA+TGG | + | chr4.4:45274770-45274789 | None:intergenic | 40.0% |
| !! | ACTTCAAGAGGAGTACCAAT+TGG | + | chr4.4:45274575-45274594 | None:intergenic | 40.0% |
| !! | GTGATTGCTTTTCAATGCCT+TGG | - | chr4.4:45274519-45274538 | MS.gene08676:CDS | 40.0% |
| !! | TACTCCTCTTGAAGTACTGT+TGG | - | chr4.4:45274580-45274599 | MS.gene08676:CDS | 40.0% |
| !!! | CTTTTTTGGGCTATAAGAGG+TGG | - | chr4.4:45274197-45274216 | MS.gene08676:CDS | 40.0% |
| TATCAGCATCCCTGTAGTTG+AGG | + | chr4.4:45274937-45274956 | None:intergenic | 45.0% | |
| TCTTCCATCCTTCCACCATA+AGG | + | chr4.4:45274740-45274759 | None:intergenic | 45.0% | |
| TGTTTCAAATTCACCGAGGG+AGG | - | chr4.4:45274907-45274926 | MS.gene08676:CDS | 45.0% | |
| ! | GAATCCTTATGGTGGAAGGA+TGG | - | chr4.4:45274733-45274752 | MS.gene08676:CDS | 45.0% |
| ! | TTTTGGGCTATAAGAGGTGG+TGG | - | chr4.4:45274200-45274219 | MS.gene08676:CDS | 45.0% |
| TAGTTGAGGAATGCCTCCCT+CGG | + | chr4.4:45274923-45274942 | None:intergenic | 50.0% | |
| !! | GGAGGCATTCCTCAACTACA+GGG | - | chr4.4:45274925-45274944 | MS.gene08676:CDS | 50.0% |
| ! | TGGGCTATAAGAGGTGGTGG+TGG | - | chr4.4:45274203-45274222 | MS.gene08676:CDS | 55.0% |
| !! | GGGAGGCATTCCTCAACTAC+AGG | - | chr4.4:45274924-45274943 | MS.gene08676:CDS | 55.0% |
| !!! | GGTGGTGGTGGTGCTAGTTT+TGG | - | chr4.4:45274215-45274234 | MS.gene08676:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45274185 | 45275117 | 45274185 | ID=MS.gene08676 |
| chr4.4 | mRNA | 45274185 | 45275117 | 45274185 | ID=MS.gene08676.t1;Parent=MS.gene08676 |
| chr4.4 | exon | 45274185 | 45275117 | 45274185 | ID=MS.gene08676.t1.exon1;Parent=MS.gene08676.t1 |
| chr4.4 | CDS | 45274185 | 45275117 | 45274185 | ID=cds.MS.gene08676.t1;Parent=MS.gene08676.t1 |
| Gene Sequence |
| Protein sequence |
