Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050100.t1 | RHN60693.1 | 94 | 466 | 27 | 1 | 1 | 466 | 88 | 552 | 6.20E-259 | 902.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050100.t1 | Q9SVG7 | 54.2 | 465 | 207 | 3 | 5 | 466 | 65 | 526 | 6.5e-148 | 525.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050100.t1 | A0A072ULR6 | 94.0 | 466 | 27 | 1 | 1 | 466 | 59 | 523 | 4.5e-259 | 902.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050100 | MS.gene05143 | 0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene050100 | MS.gene052187 | 0.809871 | 1.53E-50 | -1.69E-46 |
| MS.gene050100 | MS.gene053383 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene050100 | MS.gene055359 | 0.820816 | 5.62E-53 | -1.69E-46 |
| MS.gene050100 | MS.gene059632 | 0.821838 | 3.26E-53 | -1.69E-46 |
| MS.gene050100 | MS.gene061336 | 0.815772 | 7.79E-52 | -1.69E-46 |
| MS.gene050100 | MS.gene061337 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene050100 | MS.gene08676 | 0.867036 | 1.84E-65 | -1.69E-46 |
| MS.gene050100 | MS.gene22109 | 0.809206 | 2.12E-50 | -1.69E-46 |
| MS.gene050100 | MS.gene40442 | 0.804791 | 1.82E-49 | -1.69E-46 |
| MS.gene050100 | MS.gene60245 | 0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene050100 | MS.gene61665 | 0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene050100 | MS.gene66709 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene050100 | MS.gene75494 | 0.846388 | 2.24E-59 | -1.69E-46 |
| MS.gene050100 | MS.gene88180 | 0.867642 | 1.18E-65 | -1.69E-46 |
| MS.gene050100 | MS.gene90155 | 0.838974 | 2.09E-57 | -1.69E-46 |
| MS.gene050100 | MS.gene91805 | 0.834159 | 3.52E-56 | -1.69E-46 |
| MS.gene050100 | MS.gene92551 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene050100 | MS.gene93760 | 0.813554 | 2.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050100.t1 | MTR_4g057990 | 93.991 | 466 | 27 | 1 | 1 | 466 | 59 | 523 | 0.0 | 883 |
| MS.gene050100.t1 | MTR_4g091190 | 84.764 | 466 | 70 | 1 | 1 | 465 | 63 | 528 | 0.0 | 807 |
| MS.gene050100.t1 | MTR_4g091200 | 82.729 | 469 | 78 | 1 | 1 | 466 | 59 | 527 | 0.0 | 795 |
| MS.gene050100.t1 | MTR_6g017205 | 83.547 | 468 | 74 | 1 | 1 | 465 | 59 | 526 | 0.0 | 791 |
| MS.gene050100.t1 | MTR_2g023590 | 83.120 | 468 | 77 | 2 | 1 | 466 | 1 | 468 | 0.0 | 788 |
| MS.gene050100.t1 | MTR_4g088355 | 82.516 | 469 | 79 | 1 | 1 | 466 | 66 | 534 | 0.0 | 785 |
| MS.gene050100.t1 | MTR_4g091170 | 77.778 | 459 | 81 | 2 | 10 | 465 | 102 | 542 | 0.0 | 744 |
| MS.gene050100.t1 | MTR_4g091150 | 63.675 | 468 | 165 | 3 | 1 | 463 | 71 | 538 | 0.0 | 599 |
| MS.gene050100.t1 | MTR_2g031560 | 53.118 | 465 | 212 | 3 | 3 | 463 | 59 | 521 | 0.0 | 522 |
| MS.gene050100.t1 | MTR_2g031590 | 52.878 | 469 | 213 | 2 | 3 | 464 | 64 | 531 | 2.76e-176 | 505 |
| MS.gene050100.t1 | MTR_4g094498 | 52.700 | 463 | 216 | 3 | 3 | 464 | 73 | 533 | 3.30e-168 | 485 |
| MS.gene050100.t1 | MTR_4g094495 | 51.380 | 471 | 219 | 4 | 4 | 465 | 71 | 540 | 2.63e-162 | 470 |
| MS.gene050100.t1 | MTR_4g094488 | 52.421 | 475 | 210 | 5 | 3 | 465 | 67 | 537 | 1.73e-161 | 468 |
| MS.gene050100.t1 | MTR_4g094492 | 50.746 | 469 | 222 | 4 | 4 | 464 | 68 | 535 | 9.12e-161 | 466 |
| MS.gene050100.t1 | MTR_4g094480 | 51.173 | 469 | 221 | 3 | 4 | 465 | 68 | 535 | 2.44e-159 | 462 |
| MS.gene050100.t1 | MTR_2g031390 | 48.283 | 466 | 232 | 5 | 4 | 463 | 65 | 527 | 8.15e-159 | 461 |
| MS.gene050100.t1 | MTR_4g094478 | 51.282 | 468 | 220 | 3 | 4 | 464 | 68 | 534 | 6.53e-156 | 453 |
| MS.gene050100.t1 | MTR_4g094418 | 51.030 | 437 | 203 | 4 | 40 | 466 | 1 | 436 | 5.65e-154 | 451 |
| MS.gene050100.t1 | MTR_4g094520 | 48.927 | 466 | 230 | 5 | 4 | 464 | 69 | 531 | 6.36e-154 | 448 |
| MS.gene050100.t1 | MTR_3g009820 | 47.722 | 461 | 237 | 4 | 4 | 463 | 63 | 520 | 9.22e-153 | 445 |
| MS.gene050100.t1 | MTR_2g031420 | 50.214 | 468 | 223 | 4 | 3 | 466 | 67 | 528 | 6.90e-151 | 440 |
| MS.gene050100.t1 | MTR_2g031490 | 50.533 | 469 | 221 | 5 | 3 | 463 | 71 | 536 | 7.03e-151 | 441 |
| MS.gene050100.t1 | MTR_3g009760 | 47.629 | 464 | 233 | 5 | 4 | 463 | 63 | 520 | 1.48e-150 | 439 |
| MS.gene050100.t1 | MTR_2g031460 | 49.569 | 464 | 224 | 4 | 3 | 462 | 67 | 524 | 3.79e-150 | 439 |
| MS.gene050100.t1 | MTR_3g009880 | 47.845 | 464 | 232 | 5 | 4 | 463 | 61 | 518 | 1.01e-147 | 432 |
| MS.gene050100.t1 | MTR_4g094518 | 47.222 | 468 | 232 | 7 | 5 | 463 | 67 | 528 | 1.10e-147 | 432 |
| MS.gene050100.t1 | MTR_2g031510 | 48.401 | 469 | 231 | 5 | 3 | 463 | 73 | 538 | 1.69e-147 | 432 |
| MS.gene050100.t1 | MTR_4g094515 | 51.702 | 470 | 217 | 5 | 3 | 465 | 74 | 540 | 1.36e-146 | 447 |
| MS.gene050100.t1 | MTR_4g094515 | 51.282 | 468 | 218 | 6 | 3 | 464 | 686 | 1149 | 9.93e-145 | 443 |
| MS.gene050100.t1 | MTR_1g076830 | 38.298 | 470 | 275 | 7 | 3 | 462 | 68 | 532 | 2.23e-100 | 311 |
| MS.gene050100.t1 | MTR_2g031600 | 64.444 | 180 | 64 | 0 | 3 | 182 | 65 | 244 | 5.20e-70 | 228 |
| MS.gene050100.t1 | MTR_2g031600 | 49.359 | 156 | 78 | 1 | 309 | 464 | 245 | 399 | 1.29e-48 | 172 |
| MS.gene050100.t1 | MTR_3g009850 | 45.133 | 226 | 117 | 4 | 241 | 463 | 5 | 226 | 1.16e-59 | 196 |
| MS.gene050100.t1 | MTR_2g084370 | 48.649 | 111 | 35 | 2 | 64 | 174 | 1 | 89 | 1.74e-30 | 114 |
| MS.gene050100.t1 | MTR_2g084405 | 50.633 | 79 | 39 | 0 | 64 | 142 | 1 | 79 | 7.12e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050100.t1 | AT4G20800 | 54.077 | 466 | 208 | 3 | 4 | 466 | 64 | 526 | 1.03e-174 | 501 |
| MS.gene050100.t1 | AT1G26420 | 53.879 | 464 | 205 | 5 | 4 | 463 | 65 | 523 | 7.16e-173 | 496 |
| MS.gene050100.t1 | AT1G26380 | 54.310 | 464 | 203 | 5 | 4 | 463 | 65 | 523 | 5.34e-172 | 494 |
| MS.gene050100.t1 | AT1G26390 | 53.548 | 465 | 207 | 5 | 4 | 463 | 65 | 525 | 7.69e-167 | 481 |
| MS.gene050100.t1 | AT1G30720 | 51.709 | 468 | 218 | 4 | 2 | 465 | 63 | 526 | 4.53e-166 | 479 |
| MS.gene050100.t1 | AT1G26410 | 53.017 | 464 | 209 | 6 | 4 | 463 | 89 | 547 | 3.50e-165 | 477 |
| MS.gene050100.t1 | AT1G26400 | 50.858 | 466 | 220 | 6 | 4 | 465 | 65 | 525 | 4.45e-165 | 476 |
| MS.gene050100.t1 | AT1G34575 | 53.118 | 465 | 207 | 6 | 3 | 463 | 65 | 522 | 2.43e-164 | 474 |
| MS.gene050100.t1 | AT1G30730 | 50.855 | 468 | 222 | 4 | 2 | 465 | 62 | 525 | 2.01e-163 | 472 |
| MS.gene050100.t1 | AT1G30710 | 51.173 | 469 | 217 | 6 | 3 | 466 | 68 | 529 | 6.73e-158 | 458 |
| MS.gene050100.t1 | AT1G30700 | 50.855 | 468 | 218 | 6 | 3 | 463 | 62 | 524 | 8.92e-158 | 457 |
| MS.gene050100.t1 | AT2G34810 | 49.893 | 469 | 226 | 5 | 3 | 463 | 70 | 537 | 5.84e-154 | 448 |
| MS.gene050100.t1 | AT5G44400 | 48.602 | 465 | 232 | 6 | 4 | 463 | 72 | 534 | 3.08e-153 | 446 |
| MS.gene050100.t1 | AT2G34790 | 47.650 | 468 | 232 | 5 | 4 | 465 | 70 | 530 | 1.84e-150 | 439 |
| MS.gene050100.t1 | AT5G44390 | 47.966 | 467 | 236 | 5 | 4 | 464 | 74 | 539 | 1.21e-149 | 437 |
| MS.gene050100.t1 | AT4G20860 | 48.565 | 453 | 230 | 3 | 12 | 463 | 77 | 527 | 3.46e-148 | 433 |
| MS.gene050100.t1 | AT1G11770 | 49.032 | 465 | 231 | 5 | 3 | 464 | 67 | 528 | 3.77e-148 | 433 |
| MS.gene050100.t1 | AT1G30760 | 47.863 | 468 | 231 | 5 | 4 | 465 | 72 | 532 | 2.14e-147 | 431 |
| MS.gene050100.t1 | AT1G30760 | 47.966 | 467 | 230 | 5 | 4 | 464 | 90 | 549 | 2.24e-147 | 432 |
| MS.gene050100.t1 | AT4G20840 | 49.571 | 466 | 227 | 6 | 3 | 464 | 73 | 534 | 2.96e-147 | 431 |
| MS.gene050100.t1 | AT1G01980 | 50.106 | 471 | 222 | 8 | 3 | 464 | 67 | 533 | 4.42e-147 | 431 |
| MS.gene050100.t1 | AT5G44380 | 48.276 | 464 | 235 | 4 | 4 | 463 | 75 | 537 | 2.06e-143 | 421 |
| MS.gene050100.t1 | AT5G44380 | 48.276 | 464 | 235 | 4 | 4 | 463 | 115 | 577 | 4.07e-143 | 422 |
| MS.gene050100.t1 | AT5G44440 | 46.895 | 467 | 238 | 5 | 3 | 463 | 65 | 527 | 4.52e-142 | 418 |
| MS.gene050100.t1 | AT5G44360 | 48.060 | 464 | 232 | 6 | 4 | 463 | 70 | 528 | 7.05e-142 | 417 |
| MS.gene050100.t1 | AT4G20820 | 46.652 | 463 | 236 | 5 | 3 | 463 | 71 | 524 | 7.29e-142 | 417 |
| MS.gene050100.t1 | AT5G44360 | 48.060 | 464 | 232 | 6 | 4 | 463 | 86 | 544 | 1.01e-141 | 417 |
| MS.gene050100.t1 | AT5G44440 | 46.895 | 467 | 238 | 5 | 3 | 463 | 135 | 597 | 1.03e-140 | 417 |
| MS.gene050100.t1 | AT5G44410 | 48.077 | 468 | 227 | 8 | 3 | 463 | 69 | 527 | 8.34e-137 | 404 |
| MS.gene050100.t1 | AT4G20830 | 47.854 | 466 | 235 | 6 | 3 | 464 | 74 | 535 | 1.37e-131 | 391 |
| MS.gene050100.t1 | AT4G20830 | 47.854 | 466 | 235 | 6 | 3 | 464 | 74 | 535 | 4.70e-131 | 391 |
| MS.gene050100.t1 | AT1G30740 | 46.512 | 473 | 233 | 8 | 3 | 464 | 64 | 527 | 1.80e-128 | 383 |
| MS.gene050100.t1 | AT1G30740 | 46.512 | 473 | 233 | 8 | 3 | 464 | 67 | 530 | 2.65e-128 | 382 |
Find 63 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATCTTTATGCAATTT+TGG | 0.129047 | 4.1:+39754741 | None:intergenic |
| GATTGACCTTTGATATAAAT+TGG | 0.202133 | 4.1:+39754477 | None:intergenic |
| ATTATAATTGCCAAAGGTTT+TGG | 0.255101 | 4.1:+39755344 | None:intergenic |
| AATGAAAGTTTCCCTGAATT+AGG | 0.263442 | 4.1:-39754615 | MS.gene050100:CDS |
| GGAAATATGATGAGAAAATT+TGG | 0.272125 | 4.1:-39755008 | MS.gene050100:CDS |
| TAAATTGGTTCAGGATCTTT+TGG | 0.283126 | 4.1:+39754492 | None:intergenic |
| GGTGGTGGTGGTGCTAGTTT+TGG | 0.331271 | 4.1:-39754885 | MS.gene050100:CDS |
| TGTTACATTACTTGGATGAT+TGG | 0.334469 | 4.1:+39754137 | None:intergenic |
| AACTACAGGGATTCTGATAT+TGG | 0.336373 | 4.1:-39754162 | MS.gene050100:CDS |
| GTAGTACAAGTTAGTTTCAT+TGG | 0.337552 | 4.1:-39754678 | MS.gene050100:CDS |
| CCTTTGATATAAATTGGTTC+AGG | 0.363583 | 4.1:+39754483 | None:intergenic |
| TCTGTCTTGGAAACTCAAAT+TGG | 0.367591 | 4.1:-39754856 | MS.gene050100:CDS |
| AACTCTCTTGCTTTCCCATC+CGG | 0.369881 | 4.1:-39755080 | MS.gene050100:CDS |
| AAGAAGTTATAAAATATATA+TGG | 0.379271 | 4.1:-39754428 | MS.gene050100:CDS |
| ATGGACATTGCTAGAACATA+TGG | 0.390306 | 4.1:-39754111 | MS.gene050100:CDS |
| CAGTTTAATGTTGTTCAAAT+CGG | 0.395011 | 4.1:-39754708 | MS.gene050100:CDS |
| GAAACTGCATGGGTTGAATC+AGG | 0.419107 | 4.1:-39755146 | MS.gene050100:CDS |
| TCTTCCATCCTTCCACCATA+AGG | 0.426399 | 4.1:+39754363 | None:intergenic |
| ATGATGCAATGGAATCCTTA+TGG | 0.430429 | 4.1:-39754378 | MS.gene050100:CDS |
| TATCCTTGATAGAAAATCAA+TGG | 0.435436 | 4.1:-39754934 | MS.gene050100:CDS |
| TTTCCTGCTCTATGAGGAAA+TGG | 0.440626 | 4.1:+39754321 | None:intergenic |
| CAAAGTCGTGGCCGCCACTT+CGG | 0.441618 | 4.1:+39755252 | None:intergenic |
| TGTTGTTCAAATCGGTCAAA+AGG | 0.450491 | 4.1:-39754700 | MS.gene050100:CDS |
| ATTAGTTAGTGTGAAAACTA+AGG | 0.459890 | 4.1:-39754058 | MS.gene050100:CDS |
| GGAAAGATTTATTATACCAT+TGG | 0.464534 | 4.1:-39755113 | MS.gene050100:CDS |
| AGCAACAACACCAAAACCTT+TGG | 0.464565 | 4.1:-39755354 | MS.gene050100:CDS |
| GGGAGGCATTCCTCAACTAC+AGG | 0.464896 | 4.1:-39754176 | MS.gene050100:CDS |
| CAATTGATGTTGTTTACAAA+TGG | 0.468194 | 4.1:-39754776 | MS.gene050100:CDS |
| TACTCCTCTTGAAGTACTGT+TGG | 0.474700 | 4.1:-39754520 | MS.gene050100:CDS |
| ATCCTTGATAGAAAATCAAT+GGG | 0.490448 | 4.1:-39754933 | MS.gene050100:CDS |
| ACTTCAAGAGGAGTACCAAT+TGG | 0.491784 | 4.1:+39754528 | None:intergenic |
| CTCGGTGAATTTGAAACATA+GGG | 0.492724 | 4.1:+39754198 | None:intergenic |
| AGTGGCGGCCACGACTTTGA+AGG | 0.496433 | 4.1:-39755248 | MS.gene050100:CDS |
| TTGAGCAAAGCATACCTACT+AGG | 0.496884 | 4.1:-39754011 | MS.gene050100:CDS |
| AGTAAGTCAATTATAACAAA+AGG | 0.499818 | 4.1:+39755203 | None:intergenic |
| CCTCGGTGAATTTGAAACAT+AGG | 0.513555 | 4.1:+39754197 | None:intergenic |
| AACAAGTTTCCTGCTCTATG+AGG | 0.515664 | 4.1:+39754315 | None:intergenic |
| TGGGCTATAAGAGGTGGTGG+TGG | 0.518497 | 4.1:-39754897 | MS.gene050100:CDS |
| TGAGACATTGAATTGTTGCT+TGG | 0.523500 | 4.1:+39755300 | None:intergenic |
| GTTGAATCAGGTGCAACACT+TGG | 0.527212 | 4.1:-39755134 | MS.gene050100:CDS |
| ACACCATTTCCTCATAGAGC+AGG | 0.549021 | 4.1:-39754324 | MS.gene050100:CDS |
| ATATGGCAATTGATGATTGA+AGG | 0.549820 | 4.1:-39754411 | MS.gene050100:CDS |
| GAATCCTTATGGTGGAAGGA+TGG | 0.549881 | 4.1:-39754367 | MS.gene050100:CDS |
| CCTGAACCAATTTATATCAA+AGG | 0.553199 | 4.1:-39754483 | MS.gene050100:CDS |
| GTGAAACTTTGATGATGCAA+TGG | 0.569948 | 4.1:-39754389 | MS.gene050100:CDS |
| TTTGCAATTATAATTGCCAA+AGG | 0.570438 | 4.1:+39755338 | None:intergenic |
| TGTTTCAAATTCACCGAGGG+AGG | 0.572681 | 4.1:-39754193 | MS.gene050100:CDS |
| TATCAGAATCCCTGTAGTTG+AGG | 0.573732 | 4.1:+39754166 | None:intergenic |
| GGGAAACTTTCATTCACCAA+AGG | 0.583242 | 4.1:+39754624 | None:intergenic |
| TAGTTGAGGAATGCCTCCCT+CGG | 0.585116 | 4.1:+39754180 | None:intergenic |
| ATTTACAAGAAGAAACTGCA+TGG | 0.600593 | 4.1:-39755157 | MS.gene050100:CDS |
| TTTACAAGAAGAAACTGCAT+GGG | 0.601522 | 4.1:-39755156 | MS.gene050100:CDS |
| CTATGTTTCAAATTCACCGA+GGG | 0.622139 | 4.1:-39754196 | MS.gene050100:CDS |
| AAAATAGTGGAATTAACCCA+AGG | 0.622958 | 4.1:+39754564 | None:intergenic |
| TGAGGAAATGGTGTTTCTGA+TGG | 0.624014 | 4.1:+39754333 | None:intergenic |
| TCATCCAACAGTACTTCAAG+AGG | 0.635503 | 4.1:+39754516 | None:intergenic |
| ATGAGAAACCTTCAAAGTCG+TGG | 0.637173 | 4.1:+39755240 | None:intergenic |
| CAGATCAGAATCCGAAGTGG+CGG | 0.641760 | 4.1:-39755263 | MS.gene050100:CDS |
| GGAGGCATTCCTCAACTACA+GGG | 0.651365 | 4.1:-39754175 | MS.gene050100:CDS |
| AATGGAATCCTTATGGTGGA+AGG | 0.657608 | 4.1:-39754371 | MS.gene050100:CDS |
| ATGCAATGGAATCCTTATGG+TGG | 0.675072 | 4.1:-39754375 | MS.gene050100:CDS |
| ATTCAGATCAGAATCCGAAG+TGG | 0.706047 | 4.1:-39755266 | MS.gene050100:CDS |
| CCTATGTTTCAAATTCACCG+AGG | 0.745117 | 4.1:-39754197 | MS.gene050100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTTATAAAATATATA+TGG | - | chr4.1:39754960-39754979 | MS.gene050100:CDS | 10.0% |
| !!! | ATATATTTTATAACTTCTTT+TGG | + | chr4.1:39754959-39754978 | None:intergenic | 10.0% |
| !!! | TGATTTTGTATTATAATACT+TGG | - | chr4.1:39755098-39755117 | MS.gene050100:CDS | 15.0% |
| !! | AGTAAGTCAATTATAACAAA+AGG | + | chr4.1:39754188-39754207 | None:intergenic | 20.0% |
| !! | TCAAATCTAAAAAAATTCTC+AGG | + | chr4.1:39755361-39755380 | None:intergenic | 20.0% |
| !!! | AAAAGATCTTTATGCAATTT+TGG | + | chr4.1:39754650-39754669 | None:intergenic | 20.0% |
| !!! | TTTATAACTTCTTTTGGAAT+AGG | + | chr4.1:39754953-39754972 | None:intergenic | 20.0% |
| ! | ACATTAAAAACAGTAACTTG+TGG | + | chr4.1:39754569-39754588 | None:intergenic | 25.0% |
| ! | ATCCTTGATAGAAAATCAAT+GGG | - | chr4.1:39754455-39754474 | MS.gene050100:CDS | 25.0% |
| ! | ATTAGTTAGTGTGAAAACTA+AGG | - | chr4.1:39755330-39755349 | MS.gene050100:CDS | 25.0% |
| ! | CAGTTTAATGTTGTTCAAAT+CGG | - | chr4.1:39754680-39754699 | MS.gene050100:CDS | 25.0% |
| ! | CTTATCATACCAAAAAATAG+TGG | + | chr4.1:39754840-39754859 | None:intergenic | 25.0% |
| ! | GATTGACCTTTGATATAAAT+TGG | + | chr4.1:39754914-39754933 | None:intergenic | 25.0% |
| ! | GGAAAGATTTATTATACCAT+TGG | - | chr4.1:39754275-39754294 | MS.gene050100:CDS | 25.0% |
| ! | GGAAATATGATGAGAAAATT+TGG | - | chr4.1:39754380-39754399 | MS.gene050100:CDS | 25.0% |
| ! | TATCCTTGATAGAAAATCAA+TGG | - | chr4.1:39754454-39754473 | MS.gene050100:CDS | 25.0% |
| ! | TCCAAGTAATGTAACAAAAA+TGG | - | chr4.1:39755258-39755277 | MS.gene050100:CDS | 25.0% |
| ! | TTTGCAATTATAATTGCCAA+AGG | + | chr4.1:39754053-39754072 | None:intergenic | 25.0% |
| !! | AATTGAAAGACTTTTACCTT+TGG | - | chr4.1:39754748-39754767 | MS.gene050100:CDS | 25.0% |
| !! | AGTTTCATTGGTCAATTTTT+GGG | - | chr4.1:39754722-39754741 | MS.gene050100:CDS | 25.0% |
| !! | ATTAAAAACAGTAACTTGTG+GGG | + | chr4.1:39754567-39754586 | None:intergenic | 25.0% |
| !! | ATTATAATTGCCAAAGGTTT+TGG | + | chr4.1:39754047-39754066 | None:intergenic | 25.0% |
| !! | CAATTGATGTTGTTTACAAA+TGG | - | chr4.1:39754612-39754631 | MS.gene050100:CDS | 25.0% |
| !! | CATTAAAAACAGTAACTTGT+GGG | + | chr4.1:39754568-39754587 | None:intergenic | 25.0% |
| !! | TAGTTTCATTGGTCAATTTT+TGG | - | chr4.1:39754721-39754740 | MS.gene050100:CDS | 25.0% |
| !! | TTTTCTTCAAACCTAATTCA+GGG | + | chr4.1:39754787-39754806 | None:intergenic | 25.0% |
| !!! | AGAGTTATTTTTCTTTCCAA+TGG | + | chr4.1:39754294-39754313 | None:intergenic | 25.0% |
| !!! | TATGGAAGCAAGTTTTTTAA+AGG | - | chr4.1:39755295-39755314 | MS.gene050100:CDS | 25.0% |
| !!! | TCCATTTTTGTTACATTACT+TGG | + | chr4.1:39755262-39755281 | None:intergenic | 25.0% |
| !!! | TTACTGTTTTTAATGTGAAG+AGG | - | chr4.1:39754573-39754592 | MS.gene050100:CDS | 25.0% |
| AATGAAAGTTTCCCTGAATT+AGG | - | chr4.1:39754773-39754792 | MS.gene050100:CDS | 30.0% | |
| ATTTACAAGAAGAAACTGCA+TGG | - | chr4.1:39754231-39754250 | MS.gene050100:CDS | 30.0% | |
| CCTGAACCAATTTATATCAA+AGG | - | chr4.1:39754905-39754924 | MS.gene050100:CDS | 30.0% | |
| GCAAAAATTGTTGATGTGAA+TGG | - | chr4.1:39754428-39754447 | MS.gene050100:CDS | 30.0% | |
| TGTTACATTACTTGGATGAT+TGG | + | chr4.1:39755254-39755273 | None:intergenic | 30.0% | |
| TTTACAAGAAGAAACTGCAT+GGG | - | chr4.1:39754232-39754251 | MS.gene050100:CDS | 30.0% | |
| ! | AAAATAGTGGAATTAACCCA+AGG | + | chr4.1:39754827-39754846 | None:intergenic | 30.0% |
| ! | AACGTCATGTGAATTTTTCA+AGG | - | chr4.1:39755146-39755165 | MS.gene050100:CDS | 30.0% |
| ! | ATATGGCAATTGATGATTGA+AGG | - | chr4.1:39754977-39754996 | MS.gene050100:CDS | 30.0% |
| ! | CCTTTGATATAAATTGGTTC+AGG | + | chr4.1:39754908-39754927 | None:intergenic | 30.0% |
| ! | CTTTTCTTCAAACCTAATTC+AGG | + | chr4.1:39754788-39754807 | None:intergenic | 30.0% |
| ! | GTAGTACAAGTTAGTTTCAT+TGG | - | chr4.1:39754710-39754729 | MS.gene050100:CDS | 30.0% |
| ! | GTTTCATTGGTCAATTTTTG+GGG | - | chr4.1:39754723-39754742 | MS.gene050100:CDS | 30.0% |
| ! | TTTTGGTATGATAAGCCAAT+TGG | - | chr4.1:39754845-39754864 | MS.gene050100:CDS | 30.0% |
| !! | TAAATTGGTTCAGGATCTTT+TGG | + | chr4.1:39754899-39754918 | None:intergenic | 30.0% |
| !!! | AATGGGAGAAGATCTTTTTT+GGG | - | chr4.1:39754472-39754491 | MS.gene050100:CDS | 30.0% |
| !!! | GGGTTAATTCCACTATTTTT+TGG | - | chr4.1:39754828-39754847 | MS.gene050100:CDS | 30.0% |
| AACTACAGGGATTCTGATAT+TGG | - | chr4.1:39755226-39755245 | MS.gene050100:CDS | 35.0% | |
| ATGATGCAATGGAATCCTTA+TGG | - | chr4.1:39755010-39755029 | MS.gene050100:CDS | 35.0% | |
| ATGGACATTGCTAGAACATA+TGG | - | chr4.1:39755277-39755296 | MS.gene050100:CDS | 35.0% | |
| CTATGTTTCAAATTCACCGA+GGG | - | chr4.1:39755192-39755211 | MS.gene050100:CDS | 35.0% | |
| TCTGTCTTGGAAACTCAAAT+TGG | - | chr4.1:39754532-39754551 | MS.gene050100:CDS | 35.0% | |
| TGAGACATTGAATTGTTGCT+TGG | + | chr4.1:39754091-39754110 | None:intergenic | 35.0% | |
| TGTTGTTCAAATCGGTCAAA+AGG | - | chr4.1:39754688-39754707 | MS.gene050100:CDS | 35.0% | |
| ! | CTCGGTGAATTTGAAACATA+GGG | + | chr4.1:39755193-39755212 | None:intergenic | 35.0% |
| !! | GTGAAACTTTGATGATGCAA+TGG | - | chr4.1:39754999-39755018 | MS.gene050100:CDS | 35.0% |
| !! | TGATTGCTTTTCAATGCCTT+GGG | - | chr4.1:39754808-39754827 | MS.gene050100:CDS | 35.0% |
| !!! | CAATGGGAGAAGATCTTTTT+TGG | - | chr4.1:39754471-39754490 | MS.gene050100:CDS | 35.0% |
| !!! | CTCCCATTGATTTTCTATCA+AGG | + | chr4.1:39754460-39754479 | None:intergenic | 35.0% |
| !!! | GATCTTTTTTGGGCTATAAG+AGG | - | chr4.1:39754482-39754501 | MS.gene050100:CDS | 35.0% |
| !!! | GTTTTGGTGTTATTCTGTCT+TGG | - | chr4.1:39754519-39754538 | MS.gene050100:CDS | 35.0% |
| AACAAGTTTCCTGCTCTATG+AGG | + | chr4.1:39755076-39755095 | None:intergenic | 40.0% | |
| AGCAACAACACCAAAACCTT+TGG | - | chr4.1:39754034-39754053 | MS.gene050100:CDS | 40.0% | |
| ATGAGAAACCTTCAAAGTCG+TGG | + | chr4.1:39754151-39754170 | None:intergenic | 40.0% | |
| ATGCAATGGAATCCTTATGG+TGG | - | chr4.1:39755013-39755032 | MS.gene050100:CDS | 40.0% | |
| ATTCAGATCAGAATCCGAAG+TGG | - | chr4.1:39754122-39754141 | MS.gene050100:CDS | 40.0% | |
| CCTATGTTTCAAATTCACCG+AGG | - | chr4.1:39755191-39755210 | MS.gene050100:CDS | 40.0% | |
| GGGAAACTTTCATTCACCAA+AGG | + | chr4.1:39754767-39754786 | None:intergenic | 40.0% | |
| TATCAGAATCCCTGTAGTTG+AGG | + | chr4.1:39755225-39755244 | None:intergenic | 40.0% | |
| TCATCCAACAGTACTTCAAG+AGG | + | chr4.1:39754875-39754894 | None:intergenic | 40.0% | |
| TTGAGCAAAGCATACCTACT+AGG | - | chr4.1:39755377-39755396 | MS.gene050100:CDS | 40.0% | |
| TTTCCTGCTCTATGAGGAAA+TGG | + | chr4.1:39755070-39755089 | None:intergenic | 40.0% | |
| ! | AATGGAATCCTTATGGTGGA+AGG | - | chr4.1:39755017-39755036 | MS.gene050100:CDS | 40.0% |
| ! | CCTCGGTGAATTTGAAACAT+AGG | + | chr4.1:39755194-39755213 | None:intergenic | 40.0% |
| ! | TGAGGAAATGGTGTTTCTGA+TGG | + | chr4.1:39755058-39755077 | None:intergenic | 40.0% |
| !! | ACTTCAAGAGGAGTACCAAT+TGG | + | chr4.1:39754863-39754882 | None:intergenic | 40.0% |
| !! | GTGATTGCTTTTCAATGCCT+TGG | - | chr4.1:39754807-39754826 | MS.gene050100:CDS | 40.0% |
| !! | TACTCCTCTTGAAGTACTGT+TGG | - | chr4.1:39754868-39754887 | MS.gene050100:CDS | 40.0% |
| !!! | CATTTTTCTGGTGGTGGATA+TGG | - | chr4.1:39754359-39754378 | MS.gene050100:CDS | 40.0% |
| !!! | CTTTTTTGGGCTATAAGAGG+TGG | - | chr4.1:39754485-39754504 | MS.gene050100:CDS | 40.0% |
| AACTCTCTTGCTTTCCCATC+CGG | - | chr4.1:39754308-39754327 | MS.gene050100:CDS | 45.0% | |
| ACACCATTTCCTCATAGAGC+AGG | - | chr4.1:39755064-39755083 | MS.gene050100:CDS | 45.0% | |
| ACAGAAAAACAAACGCCGGA+TGG | + | chr4.1:39754326-39754345 | None:intergenic | 45.0% | |
| CAGAAAAACAAACGCCGGAT+GGG | + | chr4.1:39754325-39754344 | None:intergenic | 45.0% | |
| GTTGAATCAGGTGCAACACT+TGG | - | chr4.1:39754254-39754273 | MS.gene050100:CDS | 45.0% | |
| TCTTCCATCCTTCCACCATA+AGG | + | chr4.1:39755028-39755047 | None:intergenic | 45.0% | |
| TGTTTCAAATTCACCGAGGG+AGG | - | chr4.1:39755195-39755214 | MS.gene050100:CDS | 45.0% | |
| ! | GAAACTGCATGGGTTGAATC+AGG | - | chr4.1:39754242-39754261 | MS.gene050100:CDS | 45.0% |
| ! | GAATCCTTATGGTGGAAGGA+TGG | - | chr4.1:39755021-39755040 | MS.gene050100:CDS | 45.0% |
| ! | TTTTGGGCTATAAGAGGTGG+TGG | - | chr4.1:39754488-39754507 | MS.gene050100:CDS | 45.0% |
| !! | TCCGGCGTTTGTTTTTCTGT+CGG | - | chr4.1:39754326-39754345 | MS.gene050100:CDS | 45.0% |
| CAGATCAGAATCCGAAGTGG+CGG | - | chr4.1:39754125-39754144 | MS.gene050100:CDS | 50.0% | |
| CCCGACAGAAAAACAAACGC+CGG | + | chr4.1:39754330-39754349 | None:intergenic | 50.0% | |
| TAGTTGAGGAATGCCTCCCT+CGG | + | chr4.1:39755211-39755230 | None:intergenic | 50.0% | |
| !! | CCGGCGTTTGTTTTTCTGTC+GGG | - | chr4.1:39754327-39754346 | MS.gene050100:CDS | 50.0% |
| !! | CGGCGTTTGTTTTTCTGTCG+GGG | - | chr4.1:39754328-39754347 | MS.gene050100:CDS | 50.0% |
| !! | GGAGGCATTCCTCAACTACA+GGG | - | chr4.1:39755213-39755232 | MS.gene050100:CDS | 50.0% |
| !! | GTTTGTTTTTCTGTCGGGGC+TGG | - | chr4.1:39754332-39754351 | MS.gene050100:CDS | 50.0% |
| !!! | GCTGGTGGTCATTTTTCTGG+TGG | - | chr4.1:39754350-39754369 | MS.gene050100:CDS | 50.0% |
| !!! | GGTGGTCATTTTTCTGGTGG+TGG | - | chr4.1:39754353-39754372 | MS.gene050100:CDS | 50.0% |
| ! | TGGGCTATAAGAGGTGGTGG+TGG | - | chr4.1:39754491-39754510 | MS.gene050100:CDS | 55.0% |
| ! | TGTTTTTCTGTCGGGGCTGG+TGG | - | chr4.1:39754335-39754354 | MS.gene050100:CDS | 55.0% |
| !! | GGGAGGCATTCCTCAACTAC+AGG | - | chr4.1:39755212-39755231 | MS.gene050100:CDS | 55.0% |
| !!! | GGGGCTGGTGGTCATTTTTC+TGG | - | chr4.1:39754347-39754366 | MS.gene050100:CDS | 55.0% |
| !!! | GGTGGTGGTGGTGCTAGTTT+TGG | - | chr4.1:39754503-39754522 | MS.gene050100:CDS | 55.0% |
| AGTGGCGGCCACGACTTTGA+AGG | - | chr4.1:39754140-39754159 | MS.gene050100:CDS | 60.0% | |
| CAAAGTCGTGGCCGCCACTT+CGG | + | chr4.1:39754139-39754158 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39754005 | 39755405 | 39754005 | ID=MS.gene050100 |
| chr4.1 | mRNA | 39754005 | 39755405 | 39754005 | ID=MS.gene050100.t1;Parent=MS.gene050100 |
| chr4.1 | exon | 39754005 | 39755405 | 39754005 | ID=MS.gene050100.t1.exon1;Parent=MS.gene050100.t1 |
| chr4.1 | CDS | 39754005 | 39755405 | 39754005 | ID=cds.MS.gene050100.t1;Parent=MS.gene050100.t1 |
| Gene Sequence |
| Protein sequence |
