Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08682.t1 | XP_013442327.1 | 97.1 | 274 | 8 | 0 | 1 | 274 | 1 | 274 | 5.10E-152 | 547 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08682.t1 | Q8L817 | 52.5 | 261 | 120 | 4 | 8 | 267 | 13 | 270 | 9.0e-73 | 275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08682.t1 | A0A072TG98 | 97.1 | 274 | 8 | 0 | 1 | 274 | 1 | 274 | 3.7e-152 | 547.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050139 | MS.gene08682 | 0.8936 | 5.40E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08682.t1 | MTR_0219s0070 | 97.080 | 274 | 8 | 0 | 1 | 274 | 1 | 274 | 0.0 | 555 |
| MS.gene08682.t1 | MTR_1g062880 | 50.000 | 256 | 118 | 5 | 21 | 271 | 24 | 274 | 4.94e-90 | 268 |
| MS.gene08682.t1 | MTR_1g062860 | 46.545 | 275 | 140 | 4 | 1 | 270 | 3 | 275 | 2.34e-86 | 259 |
| MS.gene08682.t1 | MTR_7g090950 | 46.768 | 263 | 130 | 6 | 7 | 265 | 2 | 258 | 1.00e-77 | 237 |
| MS.gene08682.t1 | MTR_7g102960 | 47.970 | 271 | 123 | 8 | 4 | 267 | 8 | 267 | 3.84e-76 | 233 |
| MS.gene08682.t1 | MTR_1g059940 | 39.552 | 268 | 153 | 6 | 9 | 270 | 1 | 265 | 2.18e-62 | 197 |
| MS.gene08682.t1 | MTR_1g059960 | 39.483 | 271 | 151 | 7 | 6 | 270 | 2 | 265 | 7.61e-59 | 188 |
| MS.gene08682.t1 | MTR_1g059960 | 41.633 | 245 | 134 | 6 | 32 | 270 | 3 | 244 | 1.15e-58 | 187 |
| MS.gene08682.t1 | MTR_1g059900 | 41.837 | 196 | 109 | 3 | 80 | 270 | 4 | 199 | 1.85e-48 | 159 |
| MS.gene08682.t1 | MTR_0219s0130 | 77.419 | 62 | 14 | 0 | 207 | 268 | 3 | 64 | 3.93e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08682.t1 | AT1G08080 | 51.527 | 262 | 123 | 4 | 7 | 267 | 12 | 270 | 2.33e-95 | 282 |
| MS.gene08682.t1 | AT2G28210 | 49.265 | 272 | 131 | 5 | 1 | 267 | 1 | 270 | 1.09e-93 | 278 |
| MS.gene08682.t1 | AT1G08065 | 48.327 | 269 | 132 | 6 | 3 | 267 | 2 | 267 | 9.11e-84 | 252 |
| MS.gene08682.t1 | AT4G20990 | 43.939 | 264 | 139 | 4 | 5 | 265 | 3 | 260 | 4.43e-77 | 235 |
| MS.gene08682.t1 | AT5G04180 | 44.961 | 258 | 135 | 4 | 13 | 268 | 6 | 258 | 1.53e-70 | 219 |
| MS.gene08682.t1 | AT4G21000 | 42.439 | 205 | 113 | 2 | 27 | 231 | 28 | 227 | 1.73e-60 | 192 |
| MS.gene08682.t1 | AT3G52720 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.79e-58 | 188 |
| MS.gene08682.t1 | AT3G52720 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.79e-58 | 188 |
| MS.gene08682.t1 | AT3G52720 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.79e-58 | 188 |
| MS.gene08682.t1 | AT5G56330 | 42.149 | 242 | 96 | 4 | 29 | 267 | 133 | 333 | 1.29e-57 | 188 |
| MS.gene08682.t1 | AT5G56330 | 49.718 | 177 | 84 | 4 | 29 | 202 | 133 | 307 | 4.38e-53 | 175 |
| MS.gene08682.t1 | AT3G52720 | 38.362 | 232 | 129 | 6 | 7 | 231 | 4 | 228 | 5.40e-46 | 154 |
| MS.gene08682.t1 | AT2G28210 | 45.139 | 144 | 73 | 4 | 1 | 139 | 1 | 143 | 4.72e-38 | 131 |
Find 55 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAGATCCTTTCTTGTCAT+TGG | 0.314675 | 4.4:-45154080 | MS.gene08682:intron |
| ATCACTGCCGTTTCATTCAA+TGG | 0.351106 | 4.4:+45154127 | None:intergenic |
| GTCCGCTAGGACCACCGAAT+TGG | 0.354995 | 4.4:-45155459 | MS.gene08682:CDS |
| AGTGTTCAAATATCCAATTT+AGG | 0.360376 | 4.4:-45155361 | MS.gene08682:CDS |
| CTTTGATCACTCAAATCAAT+TGG | 0.367575 | 4.4:+45155382 | None:intergenic |
| GATCTGAAGTGGTCCTAAAT+TGG | 0.370427 | 4.4:+45155348 | None:intergenic |
| TCAAGCTATCTACAAATTGA+TGG | 0.380494 | 4.4:-45155149 | MS.gene08682:CDS |
| CCGTTTCATTCAATGGAGTT+TGG | 0.380913 | 4.4:+45154134 | None:intergenic |
| GAACAGCAGCTTGAAGCAAT+TGG | 0.399825 | 4.4:+45153610 | None:intergenic |
| TCCGCTAGGACCACCGAATT+GGG | 0.400186 | 4.4:-45155458 | MS.gene08682:CDS |
| ATTGGAGTATTGTACACAAT+TGG | 0.400371 | 4.4:-45154106 | MS.gene08682:CDS |
| TTGAATGAAACGGCAGTGAT+TGG | 0.416758 | 4.4:-45154124 | MS.gene08682:CDS |
| GTGTTGAAATTAATCTGATT+AGG | 0.417187 | 4.4:+45153869 | None:intergenic |
| CCAACTTCTTGAGACATTGC+TGG | 0.422288 | 4.4:+45155708 | None:intergenic |
| AATGGCAAAGCTTACTTCAC+TGG | 0.426466 | 4.4:-45155778 | MS.gene08682:CDS |
| GTTCGATCTAGAGTTACATT+TGG | 0.435599 | 4.4:-45154161 | MS.gene08682:CDS |
| CATATAGTTGGAAGATGACT+TGG | 0.440855 | 4.4:-45153945 | MS.gene08682:intron |
| TATGTACCTTACACCATTGA+TGG | 0.448047 | 4.4:+45155076 | None:intergenic |
| CATGCAGTGAAAATGTTACT+TGG | 0.451442 | 4.4:-45153805 | MS.gene08682:CDS |
| ACCAATGACAAGAAAGGATC+TGG | 0.457176 | 4.4:+45154079 | None:intergenic |
| CAACTTCTTGAGACATTGCT+GGG | 0.459401 | 4.4:+45155709 | None:intergenic |
| GGTTTAATGTGTCCCCAATT+CGG | 0.461574 | 4.4:+45155445 | None:intergenic |
| ACTGAGTTCAATTATGATGA+AGG | 0.476655 | 4.4:-45155484 | MS.gene08682:CDS |
| CCATCTGAACACACCATCAA+TGG | 0.480971 | 4.4:-45155089 | MS.gene08682:CDS |
| GCAATTTCTAATAATACTGC+CGG | 0.489055 | 4.4:-45153920 | MS.gene08682:CDS |
| TGCACTAAGCGGTTGTTCAA+TGG | 0.489207 | 4.4:+45152939 | None:intergenic |
| CTGGGCATGATGAAAGCAAA+AGG | 0.501092 | 4.4:+45155727 | None:intergenic |
| TTAGTGCAGCTGAACTGTTA+TGG | 0.502021 | 4.4:-45152924 | MS.gene08682:CDS |
| AACAAAGTATTATAGATACA+TGG | 0.509158 | 4.4:-45153846 | MS.gene08682:CDS |
| ATGAACTTCTACAGTTCCAT+TGG | 0.511985 | 4.4:-45155118 | MS.gene08682:CDS |
| CAATTTCTAATAATACTGCC+GGG | 0.525292 | 4.4:-45153919 | MS.gene08682:CDS |
| CGGTTGTTCAATGGCTGCAA+TGG | 0.527633 | 4.4:+45152948 | None:intergenic |
| TAAGTTACCAATGACAAGAA+AGG | 0.529311 | 4.4:+45154073 | None:intergenic |
| CCAAACTCCATTGAATGAAA+CGG | 0.530385 | 4.4:-45154134 | MS.gene08682:CDS |
| ACCCACTGCTCTTTCTTCCC+CGG | 0.534827 | 4.4:+45153901 | None:intergenic |
| CAGCTGAACTGTTATGGAGC+TGG | 0.535050 | 4.4:-45152918 | MS.gene08682:CDS |
| CCAGCAATGTCTCAAGAAGT+TGG | 0.535756 | 4.4:-45155708 | MS.gene08682:intron |
| AACACACCATCAATGGTGTA+AGG | 0.535872 | 4.4:-45155082 | MS.gene08682:intron |
| CCATTGATGGTGTGTTCAGA+TGG | 0.547509 | 4.4:+45155089 | None:intergenic |
| TACTTGGACAGTCATTAAAG+AGG | 0.550938 | 4.4:-45153789 | MS.gene08682:intron |
| ATAGTTGGAAGATGACTTGG+AGG | 0.569426 | 4.4:-45153942 | MS.gene08682:intron |
| TATGATGAAGGGAGTCCGCT+AGG | 0.573502 | 4.4:-45155472 | MS.gene08682:CDS |
| CTGAGTTCAATTATGATGAA+GGG | 0.578044 | 4.4:-45155483 | MS.gene08682:CDS |
| AAACAGGGGTCATGATGTCA+AGG | 0.587919 | 4.4:-45155296 | MS.gene08682:intron |
| GACACATTAAACCCAACGAA+TGG | 0.596322 | 4.4:-45155435 | MS.gene08682:CDS |
| GGATTGTAGTTGATCTGAAG+TGG | 0.602641 | 4.4:+45155337 | None:intergenic |
| CCCCAATTCGGTGGTCCTAG+CGG | 0.613572 | 4.4:+45155457 | None:intergenic |
| CCGCTAGGACCACCGAATTG+GGG | 0.623257 | 4.4:-45155457 | MS.gene08682:CDS |
| GCCGGGGAAGAAAGAGCAGT+GGG | 0.625175 | 4.4:-45153902 | MS.gene08682:CDS |
| ACAAAGTATTATAGATACAT+GGG | 0.632114 | 4.4:-45153845 | MS.gene08682:CDS |
| AACAGTTCAGCTGCACTAAG+CGG | 0.632783 | 4.4:+45152928 | None:intergenic |
| TTAATGTGTCCCCAATTCGG+TGG | 0.639897 | 4.4:+45155448 | None:intergenic |
| GTTCAGATGGAGTATGCCAA+TGG | 0.641032 | 4.4:+45155102 | None:intergenic |
| TGCCGGGGAAGAAAGAGCAG+TGG | 0.668457 | 4.4:-45153903 | MS.gene08682:CDS |
| AATTTCTAATAATACTGCCG+GGG | 0.680545 | 4.4:-45153918 | MS.gene08682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAGATTATAAAATTAAA+TGG | + | chr4.4:45155022-45155041 | None:intergenic | 10.0% |
| !! | TTATTATTATCATGAATTAA+GGG | + | chr4.4:45153649-45153668 | None:intergenic | 10.0% |
| !! | TTTATTATTATCATGAATTA+AGG | + | chr4.4:45153650-45153669 | None:intergenic | 10.0% |
| !!! | AACATTTTTTATTCATATTT+AGG | + | chr4.4:45153051-45153070 | None:intergenic | 10.0% |
| !!! | ACATTTTTTATTCATATTTA+GGG | + | chr4.4:45153050-45153069 | None:intergenic | 10.0% |
| !!! | TATTTGTTATTTATTTTGTA+GGG | + | chr4.4:45154026-45154045 | None:intergenic | 10.0% |
| !! | AATTTCTAATCAAATAAATG+TGG | + | chr4.4:45154978-45154997 | None:intergenic | 15.0% |
| !! | ATGATTAAGAAAATTATTTG+AGG | + | chr4.4:45153486-45153505 | None:intergenic | 15.0% |
| !!! | ATATTTTTTGACAAAATGTA+AGG | + | chr4.4:45154393-45154412 | None:intergenic | 15.0% |
| !!! | GTATTTGTTATTTATTTTGT+AGG | + | chr4.4:45154027-45154046 | None:intergenic | 15.0% |
| !!! | TAATCATTTTTTCTATGAAT+AGG | - | chr4.4:45153499-45153518 | MS.gene08682:intron | 15.0% |
| !! | AAGGCAAAAAAAAAACTTTA+TGG | + | chr4.4:45154374-45154393 | None:intergenic | 20.0% |
| !! | AAGGTTTCATAAAAAAAGTA+TGG | + | chr4.4:45155512-45155531 | None:intergenic | 20.0% |
| !! | ACTAGTTAAAGATCTAAAAA+TGG | - | chr4.4:45155353-45155372 | MS.gene08682:CDS | 20.0% |
| !! | CGTAAATATGTAAAAACAAA+AGG | + | chr4.4:45153777-45153796 | None:intergenic | 20.0% |
| !! | CTAGTTAAAGATCTAAAAAT+GGG | - | chr4.4:45155354-45155373 | MS.gene08682:CDS | 20.0% |
| !! | TATAATCTATTCAAATGACT+AGG | - | chr4.4:45155030-45155049 | MS.gene08682:intron | 20.0% |
| !! | TGTTTATACATGATATTGTA+CGG | + | chr4.4:45153122-45153141 | None:intergenic | 20.0% |
| !! | TTATTCAGTGAATTTGAAAA+CGG | + | chr4.4:45153151-45153170 | None:intergenic | 20.0% |
| !!! | AAATTCTAAGATGGTATTAA+AGG | - | chr4.4:45154172-45154191 | MS.gene08682:intron | 20.0% |
| !!! | AACAAAGTATTATAGATACA+TGG | - | chr4.4:45154842-45154861 | MS.gene08682:intron | 20.0% |
| !!! | ACAAAGTATTATAGATACAT+GGG | - | chr4.4:45154843-45154862 | MS.gene08682:intron | 20.0% |
| !!! | AGGTTTCATAAAAAAAGTAT+GGG | + | chr4.4:45155511-45155530 | None:intergenic | 20.0% |
| !!! | CTAATAATTAAATTTGTTGC+AGG | - | chr4.4:45154505-45154524 | MS.gene08682:intron | 20.0% |
| !!! | TAAAACTTTGAAGCTAATAT+TGG | + | chr4.4:45154059-45154078 | None:intergenic | 20.0% |
| !!! | TATTTGTTGTTAGAAGATTT+GGG | - | chr4.4:45153716-45153735 | MS.gene08682:intron | 20.0% |
| !!! | TTAATACCATCTTAGAATTT+TGG | + | chr4.4:45154172-45154191 | None:intergenic | 20.0% |
| !!! | TTAGCTTCAAAGTTTTATAT+TGG | - | chr4.4:45154062-45154081 | MS.gene08682:intron | 20.0% |
| !!! | TTATTTGTTGTTAGAAGATT+TGG | - | chr4.4:45153715-45153734 | MS.gene08682:intron | 20.0% |
| !!! | TTTATGGTGTTTTAGAATTT+GGG | + | chr4.4:45154358-45154377 | None:intergenic | 20.0% |
| ! | AAAACTAAGTATCCAAGAAA+AGG | + | chr4.4:45154260-45154279 | None:intergenic | 25.0% |
| ! | AAAAGGTTATATCTCATCTA+AGG | + | chr4.4:45154243-45154262 | None:intergenic | 25.0% |
| ! | ACAAAACAGCTAAGAAAAAA+AGG | + | chr4.4:45153017-45153036 | None:intergenic | 25.0% |
| ! | ACACTAGTGAACATAATTAA+GGG | - | chr4.4:45153877-45153896 | MS.gene08682:CDS | 25.0% |
| ! | AGTGTTCAAATATCCAATTT+AGG | - | chr4.4:45153327-45153346 | MS.gene08682:intron | 25.0% |
| ! | ATTTAACTACCCAACTATAT+GGG | + | chr4.4:45154471-45154490 | None:intergenic | 25.0% |
| ! | CATATGTTTGTAAGTAATGA+CGG | - | chr4.4:45154102-45154121 | MS.gene08682:CDS | 25.0% |
| ! | GTGTTGAAATTAATCTGATT+AGG | + | chr4.4:45154822-45154841 | None:intergenic | 25.0% |
| ! | TAATGCAACTCTTAAAAACA+GGG | - | chr4.4:45153377-45153396 | MS.gene08682:intron | 25.0% |
| ! | TATTTAACTACCCAACTATA+TGG | + | chr4.4:45154472-45154491 | None:intergenic | 25.0% |
| ! | TCATTACTTACAAACATATG+TGG | + | chr4.4:45154102-45154121 | None:intergenic | 25.0% |
| ! | TTATAGATTTAATTCACGCT+GGG | + | chr4.4:45153947-45153966 | None:intergenic | 25.0% |
| ! | TTCCAACTATATGAAAAAGA+TGG | + | chr4.4:45154736-45154755 | None:intergenic | 25.0% |
| !! | ATCACGCATATAGTTTTTAT+TGG | - | chr4.4:45154441-45154460 | MS.gene08682:intron | 25.0% |
| !! | ATTAAGGGAATGAACAATTT+TGG | - | chr4.4:45153892-45153911 | MS.gene08682:CDS | 25.0% |
| !! | GATCTCTGTTTTATAGATTA+AGG | + | chr4.4:45155531-45155550 | None:intergenic | 25.0% |
| !! | TTATTGGCTGACATTTATTT+CGG | + | chr4.4:45155257-45155276 | None:intergenic | 25.0% |
| !!! | CTCTACTTAACTAGTTTTAT+TGG | - | chr4.4:45154952-45154971 | MS.gene08682:intron | 25.0% |
| !!! | CTTTATGGTGTTTTAGAATT+TGG | + | chr4.4:45154359-45154378 | None:intergenic | 25.0% |
| !!! | GAAACTAAGTTTTAAGATGA+GGG | + | chr4.4:45154128-45154147 | None:intergenic | 25.0% |
| !!! | TGAAACTAAGTTTTAAGATG+AGG | + | chr4.4:45154129-45154148 | None:intergenic | 25.0% |
| !!! | TTCCATCTTTTTCATATAGT+TGG | - | chr4.4:45154731-45154750 | MS.gene08682:intron | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | + | chr4.4:45153375-45153394 | None:intergenic | 25.0% |
| AACAGAACTCATGCAAAATA+TGG | + | chr4.4:45155153-45155172 | None:intergenic | 30.0% | |
| AATGCAACTCTTAAAAACAG+GGG | - | chr4.4:45153378-45153397 | MS.gene08682:intron | 30.0% | |
| AATTTCTAATAATACTGCCG+GGG | - | chr4.4:45154770-45154789 | MS.gene08682:intron | 30.0% | |
| ACTGAGTTCAATTATGATGA+AGG | - | chr4.4:45153204-45153223 | MS.gene08682:intron | 30.0% | |
| ATCAATCCTCACATACAAAT+CGG | - | chr4.4:45154306-45154325 | MS.gene08682:intron | 30.0% | |
| CAATTTCTAATAATACTGCC+GGG | - | chr4.4:45154769-45154788 | MS.gene08682:intron | 30.0% | |
| CACACTAGTGAACATAATTA+AGG | - | chr4.4:45153876-45153895 | MS.gene08682:CDS | 30.0% | |
| CTAATGCAACTCTTAAAAAC+AGG | - | chr4.4:45153376-45153395 | MS.gene08682:intron | 30.0% | |
| CTGAGTTCAATTATGATGAA+GGG | - | chr4.4:45153205-45153224 | MS.gene08682:intron | 30.0% | |
| CTTTGATCACTCAAATCAAT+TGG | + | chr4.4:45153309-45153328 | None:intergenic | 30.0% | |
| GCAATTTCTAATAATACTGC+CGG | - | chr4.4:45154768-45154787 | MS.gene08682:intron | 30.0% | |
| GTTATAGATTTAATTCACGC+TGG | + | chr4.4:45153948-45153967 | None:intergenic | 30.0% | |
| TAAGTTACCAATGACAAGAA+AGG | + | chr4.4:45154618-45154637 | None:intergenic | 30.0% | |
| TCAAGCTATCTACAAATTGA+TGG | - | chr4.4:45153539-45153558 | MS.gene08682:intron | 30.0% | |
| TGTACGGAATAAAAAGTTGT+AGG | + | chr4.4:45153106-45153125 | None:intergenic | 30.0% | |
| TTTCCAAACTAATCGTTTCT+TGG | + | chr4.4:45154287-45154306 | None:intergenic | 30.0% | |
| ! | AAGTAACATTTTCACTGCAT+GGG | + | chr4.4:45154884-45154903 | None:intergenic | 30.0% |
| ! | ATATTTGATGACATTTGCAG+AGG | - | chr4.4:45153176-45153195 | MS.gene08682:intron | 30.0% |
| ! | GAATGGTTTTTGTGCAAAAA+TGG | - | chr4.4:45153270-45153289 | MS.gene08682:intron | 30.0% |
| ! | GATCAACCAAAATTCTAAGA+TGG | - | chr4.4:45154163-45154182 | MS.gene08682:CDS | 30.0% |
| ! | GATGAGATATAACCTTTTCT+TGG | - | chr4.4:45154245-45154264 | MS.gene08682:intron | 30.0% |
| ! | TATTGGCTGACATTTATTTC+GGG | + | chr4.4:45155256-45155275 | None:intergenic | 30.0% |
| !! | ATTGGAGTATTGTACACAAT+TGG | - | chr4.4:45154582-45154601 | MS.gene08682:intron | 30.0% |
| !! | GTGGGTCTTATATACTTTTT+GGG | - | chr4.4:45155306-45155325 | MS.gene08682:CDS | 30.0% |
| !! | GTTTTTAAGAGTTGCATTAG+AGG | + | chr4.4:45153376-45153395 | None:intergenic | 30.0% |
| !! | TGTGGGTCTTATATACTTTT+TGG | - | chr4.4:45155305-45155324 | MS.gene08682:CDS | 30.0% |
| !!! | TATTAGTTTGCCACATTTTC+TGG | - | chr4.4:45155558-45155577 | MS.gene08682:intron | 30.0% |
| AAACTTGTACTAGATCACAC+TGG | + | chr4.4:45154655-45154674 | None:intergenic | 35.0% | |
| AAGTTAAGGTATACTGTGGT+TGG | + | chr4.4:45155694-45155713 | None:intergenic | 35.0% | |
| ACAGTATACCTTAACTTTGC+AGG | - | chr4.4:45155697-45155716 | MS.gene08682:intron | 35.0% | |
| ATGAACTTCTACAGTTCCAT+TGG | - | chr4.4:45153570-45153589 | MS.gene08682:intron | 35.0% | |
| ATGGGAAGATAGCTAGTAAA+AGG | + | chr4.4:45155003-45155022 | None:intergenic | 35.0% | |
| CATATAGTTGGAAGATGACT+TGG | - | chr4.4:45154743-45154762 | MS.gene08682:intron | 35.0% | |
| CATGCAGTGAAAATGTTACT+TGG | - | chr4.4:45154883-45154902 | MS.gene08682:intron | 35.0% | |
| CCAAACTCCATTGAATGAAA+CGG | - | chr4.4:45154554-45154573 | MS.gene08682:intron | 35.0% | |
| GATGGTATTAAAGGCAATCT+AGG | - | chr4.4:45154181-45154200 | MS.gene08682:intron | 35.0% | |
| GGCTTCATGACTTTCTTATA+AGG | - | chr4.4:45153737-45153756 | MS.gene08682:intron | 35.0% | |
| TACTTGGACAGTCATTAAAG+AGG | - | chr4.4:45154899-45154918 | MS.gene08682:intron | 35.0% | |
| TAGATCTTTAACTAGTGCCT+CGG | + | chr4.4:45155349-45155368 | None:intergenic | 35.0% | |
| TATGTACCTTACACCATTGA+TGG | + | chr4.4:45153615-45153634 | None:intergenic | 35.0% | |
| TGCAAAGTTAAGGTATACTG+TGG | + | chr4.4:45155698-45155717 | None:intergenic | 35.0% | |
| TTGCACAAAAACCATTCGTT+GGG | + | chr4.4:45153267-45153286 | None:intergenic | 35.0% | |
| TTTGCACAAAAACCATTCGT+TGG | + | chr4.4:45153268-45153287 | None:intergenic | 35.0% | |
| ! | AGGGAATGAACAATTTTGGA+AGG | - | chr4.4:45153896-45153915 | MS.gene08682:CDS | 35.0% |
| ! | AGTAACATTTTCACTGCATG+GGG | + | chr4.4:45154883-45154902 | None:intergenic | 35.0% |
| ! | CAAGTAACATTTTCACTGCA+TGG | + | chr4.4:45154885-45154904 | None:intergenic | 35.0% |
| ! | GATCCAAGAAACGATTAGTT+TGG | - | chr4.4:45154281-45154300 | MS.gene08682:intron | 35.0% |
| ! | GTTCGATCTAGAGTTACATT+TGG | - | chr4.4:45154527-45154546 | MS.gene08682:intron | 35.0% |
| ! | TGCATGAGTTCTGTTTTGTA+AGG | - | chr4.4:45155158-45155177 | MS.gene08682:CDS | 35.0% |
| !! | ACTAAACCGATTTGTATGTG+AGG | + | chr4.4:45154315-45154334 | None:intergenic | 35.0% |
| !!! | TGGTGTTTTAGAATTTGGGT+TGG | + | chr4.4:45154354-45154373 | None:intergenic | 35.0% |
| AAAGTATGGGTCATGCTAAC+CGG | + | chr4.4:45155498-45155517 | None:intergenic | 40.0% | |
| AACACACCATCAATGGTGTA+AGG | - | chr4.4:45153606-45153625 | MS.gene08682:CDS | 40.0% | |
| AAGCGAATAATTGCTTCACG+AGG | + | chr4.4:45155588-45155607 | None:intergenic | 40.0% | |
| ACCAATGACAAGAAAGGATC+TGG | + | chr4.4:45154612-45154631 | None:intergenic | 40.0% | |
| ACGAGGATTTCCAGAAAATG+TGG | + | chr4.4:45155571-45155590 | None:intergenic | 40.0% | |
| AGATCTTTAACTAGTGCCTC+GGG | + | chr4.4:45155348-45155367 | None:intergenic | 40.0% | |
| ATTGGATCGCCCATATAGTT+GGG | - | chr4.4:45154459-45154478 | MS.gene08682:intron | 40.0% | |
| CAACTTCTTGAGACATTGCT+GGG | + | chr4.4:45152982-45153001 | None:intergenic | 40.0% | |
| CAATAAAATATCTCCCTGGC+CGG | - | chr4.4:45155271-45155290 | MS.gene08682:intron | 40.0% | |
| CAGCCAATAAAATATCTCCC+TGG | - | chr4.4:45155267-45155286 | MS.gene08682:intron | 40.0% | |
| CCGTTTCATTCAATGGAGTT+TGG | + | chr4.4:45154557-45154576 | None:intergenic | 40.0% | |
| GACACATTAAACCCAACGAA+TGG | - | chr4.4:45153253-45153272 | MS.gene08682:intron | 40.0% | |
| GGATTGTAGTTGATCTGAAG+TGG | + | chr4.4:45153354-45153373 | None:intergenic | 40.0% | |
| GGTTTAATGTGTCCCCAATT+CGG | + | chr4.4:45153246-45153265 | None:intergenic | 40.0% | |
| GTCATAGTCCTGCAAAGTTA+AGG | + | chr4.4:45155708-45155727 | None:intergenic | 40.0% | |
| TAAGGTATACTGTGGTTGGT+TGG | + | chr4.4:45155690-45155709 | None:intergenic | 40.0% | |
| TATTGGATCGCCCATATAGT+TGG | - | chr4.4:45154458-45154477 | MS.gene08682:intron | 40.0% | |
| TTAGTGCAGCTGAACTGTTA+TGG | - | chr4.4:45155764-45155783 | MS.gene08682:CDS | 40.0% | |
| TTGAATGAAACGGCAGTGAT+TGG | - | chr4.4:45154564-45154583 | MS.gene08682:intron | 40.0% | |
| ! | ATAGTTGGAAGATGACTTGG+AGG | - | chr4.4:45154746-45154765 | MS.gene08682:intron | 40.0% |
| ! | ATCACTGCCGTTTCATTCAA+TGG | + | chr4.4:45154564-45154583 | None:intergenic | 40.0% |
| ! | GATCTGAAGTGGTCCTAAAT+TGG | + | chr4.4:45153343-45153362 | None:intergenic | 40.0% |
| ! | GTAACATTTTCACTGCATGG+GGG | + | chr4.4:45154882-45154901 | None:intergenic | 40.0% |
| AAACAGGGGTCATGATGTCA+AGG | - | chr4.4:45153392-45153411 | MS.gene08682:intron | 45.0% | |
| AACAGTTCAGCTGCACTAAG+CGG | + | chr4.4:45155763-45155782 | None:intergenic | 45.0% | |
| CCAACTTCTTGAGACATTGC+TGG | + | chr4.4:45152983-45153002 | None:intergenic | 45.0% | |
| CCAGCAATGTCTCAAGAAGT+TGG | - | chr4.4:45152980-45152999 | MS.gene08682:intron | 45.0% | |
| CCATCTGAACACACCATCAA+TGG | - | chr4.4:45153599-45153618 | MS.gene08682:intron | 45.0% | |
| CTAGGTCTCTCAAAGCTTGA+AGG | - | chr4.4:45154199-45154218 | MS.gene08682:intron | 45.0% | |
| CTGGGCATGATGAAAGCAAA+AGG | + | chr4.4:45152964-45152983 | None:intergenic | 45.0% | |
| GAACAGCAGCTTGAAGCAAT+TGG | + | chr4.4:45155081-45155100 | None:intergenic | 45.0% | |
| GATCTTTAACTAGTGCCTCG+GGG | + | chr4.4:45155347-45155366 | None:intergenic | 45.0% | |
| GCCAGATCCTTTCTTGTCAT+TGG | - | chr4.4:45154608-45154627 | MS.gene08682:intron | 45.0% | |
| GTTCAGATGGAGTATGCCAA+TGG | + | chr4.4:45153589-45153608 | None:intergenic | 45.0% | |
| TGCACTAAGCGGTTGTTCAA+TGG | + | chr4.4:45155752-45155771 | None:intergenic | 45.0% | |
| TTAATGTGTCCCCAATTCGG+TGG | + | chr4.4:45153243-45153262 | None:intergenic | 45.0% | |
| ! | CGGCCAGGGAGATATTTTAT+TGG | + | chr4.4:45155273-45155292 | None:intergenic | 45.0% |
| !! | CCATTGATGGTGTGTTCAGA+TGG | + | chr4.4:45153602-45153621 | None:intergenic | 45.0% |
| !! | AAATAATTTATTAACATAAA+AGG | + | chr4.4:45155445-45155464 | None:intergenic | 5.0% |
| !! | AATAGATTATAAAATTAAAT+GGG | + | chr4.4:45155021-45155040 | None:intergenic | 5.0% |
| AAATGTTAACCGATGCCCCG+AGG | - | chr4.4:45155329-45155348 | MS.gene08682:CDS | 50.0% | |
| CAGCTGAACTGTTATGGAGC+TGG | - | chr4.4:45155770-45155789 | MS.gene08682:CDS | 50.0% | |
| CGGTTGTTCAATGGCTGCAA+TGG | + | chr4.4:45155743-45155762 | None:intergenic | 50.0% | |
| GACCCACAACCCATGATTTC+CGG | + | chr4.4:45155293-45155312 | None:intergenic | 50.0% | |
| TATGATGAAGGGAGTCCGCT+AGG | - | chr4.4:45153216-45153235 | MS.gene08682:intron | 50.0% | |
| TATGCTTAACCAGTGCCCCA+GGG | - | chr4.4:45155469-45155488 | MS.gene08682:CDS | 50.0% | |
| TTATGCTTAACCAGTGCCCC+AGG | - | chr4.4:45155468-45155487 | MS.gene08682:CDS | 50.0% | |
| ACAACCCATGATTTCCGGCC+AGG | + | chr4.4:45155288-45155307 | None:intergenic | 55.0% | |
| ACCCACTGCTCTTTCTTCCC+CGG | + | chr4.4:45154790-45154809 | None:intergenic | 55.0% | |
| ATCTCCCTGGCCGGAAATCA+TGG | - | chr4.4:45155280-45155299 | MS.gene08682:intron | 55.0% | |
| ATGCTTAACCAGTGCCCCAG+GGG | - | chr4.4:45155470-45155489 | MS.gene08682:CDS | 55.0% | |
| CAACCCATGATTTCCGGCCA+GGG | + | chr4.4:45155287-45155306 | None:intergenic | 55.0% | |
| TAACTAGTGCCTCGGGGCAT+CGG | + | chr4.4:45155341-45155360 | None:intergenic | 55.0% | |
| TCCGCTAGGACCACCGAATT+GGG | - | chr4.4:45153230-45153249 | MS.gene08682:intron | 55.0% | |
| TCTCCCTGGCCGGAAATCAT+GGG | - | chr4.4:45155281-45155300 | MS.gene08682:intron | 55.0% | |
| ! | GGCCGGAAATCATGGGTTGT+GGG | - | chr4.4:45155288-45155307 | MS.gene08682:intron | 55.0% |
| ! | TGGCCGGAAATCATGGGTTG+TGG | - | chr4.4:45155287-45155306 | MS.gene08682:intron | 55.0% |
| CCGCTAGGACCACCGAATTG+GGG | - | chr4.4:45153231-45153250 | MS.gene08682:intron | 60.0% | |
| GCCGGGGAAGAAAGAGCAGT+GGG | - | chr4.4:45154786-45154805 | MS.gene08682:intron | 60.0% | |
| GTCCGCTAGGACCACCGAAT+TGG | - | chr4.4:45153229-45153248 | MS.gene08682:intron | 60.0% | |
| TCATGCTAACCGGTGCCCCT+GGG | + | chr4.4:45155488-45155507 | None:intergenic | 60.0% | |
| TGCCGGGGAAGAAAGAGCAG+TGG | - | chr4.4:45154785-45154804 | MS.gene08682:intron | 60.0% | |
| ! | CCCCAATTCGGTGGTCCTAG+CGG | + | chr4.4:45153234-45153253 | None:intergenic | 60.0% |
| CATGCTAACCGGTGCCCCTG+GGG | + | chr4.4:45155487-45155506 | None:intergenic | 65.0% | |
| GTCATGCTAACCGGTGCCCC+TGG | + | chr4.4:45155489-45155508 | None:intergenic | 65.0% | |
| ! | AACCAGTGCCCCAGGGGCAC+CGG | - | chr4.4:45155476-45155495 | MS.gene08682:CDS | 70.0% |
| AACCGGTGCCCCTGGGGCAC+TGG | + | chr4.4:45155481-45155500 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45152911 | 45155799 | 45152911 | ID=MS.gene08682 |
| chr4.4 | mRNA | 45152911 | 45155799 | 45152911 | ID=MS.gene08682.t1;Parent=MS.gene08682 |
| chr4.4 | exon | 45155709 | 45155799 | 45155709 | ID=MS.gene08682.t1.exon1;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45155709 | 45155799 | 45155709 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| chr4.4 | exon | 45155297 | 45155514 | 45155297 | ID=MS.gene08682.t1.exon2;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45155297 | 45155514 | 45155297 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| chr4.4 | exon | 45155083 | 45155189 | 45155083 | ID=MS.gene08682.t1.exon3;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45155083 | 45155189 | 45155083 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| chr4.4 | exon | 45154081 | 45154183 | 45154081 | ID=MS.gene08682.t1.exon4;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45154081 | 45154183 | 45154081 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| chr4.4 | exon | 45153790 | 45153960 | 45153790 | ID=MS.gene08682.t1.exon5;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45153790 | 45153960 | 45153790 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| chr4.4 | exon | 45153605 | 45153658 | 45153605 | ID=MS.gene08682.t1.exon6;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45153605 | 45153658 | 45153605 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| chr4.4 | exon | 45152911 | 45152991 | 45152911 | ID=MS.gene08682.t1.exon7;Parent=MS.gene08682.t1 |
| chr4.4 | CDS | 45152911 | 45152991 | 45152911 | ID=cds.MS.gene08682.t1;Parent=MS.gene08682.t1 |
| Gene Sequence |
| Protein sequence |
