Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050139.t1 | XP_013442327.1 | 96 | 274 | 11 | 0 | 1 | 274 | 1 | 274 | 4.00E-149 | 537.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050139.t1 | Q84UV8 | 52.5 | 276 | 119 | 8 | 1 | 273 | 3 | 269 | 8.1e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050139.t1 | A0A072TG98 | 96.0 | 274 | 11 | 0 | 1 | 274 | 1 | 274 | 2.9e-149 | 537.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050139 | MS.gene053074 | 0.806232 | 9.09E-50 | -1.69E-46 |
| MS.gene050139 | MS.gene058168 | 0.811528 | 6.69E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene06339 | 0.826746 | 2.29E-54 | -1.69E-46 |
| MS.gene050139 | MS.gene066457 | 0.805679 | 1.19E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene07344 | 0.813786 | 2.15E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene07942 | 0.813543 | 2.43E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene08682 | 0.8936 | 5.40E-75 | -1.69E-46 |
| MS.gene050139 | MS.gene08745 | 0.891744 | 3.00E-74 | -1.69E-46 |
| MS.gene050139 | MS.gene25836 | 0.803747 | 3.01E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene25868 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene050139 | MS.gene27500 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene31254 | 0.817162 | 3.80E-52 | -1.69E-46 |
| MS.gene050139 | MS.gene38528 | 0.813262 | 2.80E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene39152 | 0.800701 | 1.27E-48 | -1.69E-46 |
| MS.gene050139 | MS.gene40950 | 0.813187 | 2.91E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene43995 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene050139 | MS.gene54871 | 0.817302 | 3.54E-52 | -1.69E-46 |
| MS.gene050139 | MS.gene56018 | 0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene56057 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene58270 | 0.800199 | 1.61E-48 | -1.69E-46 |
| MS.gene050139 | MS.gene70021 | 0.815857 | 7.46E-52 | -1.69E-46 |
| MS.gene050139 | MS.gene70022 | 0.837271 | 5.73E-57 | -1.69E-46 |
| MS.gene050139 | MS.gene75169 | 0.811662 | 6.26E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene75321 | 0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene82810 | 0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene050139 | MS.gene86035 | 0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene050139 | MS.gene87685 | 0.835044 | 2.11E-56 | -1.69E-46 |
| MS.gene050139 | MS.gene87804 | 0.815237 | 1.02E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene88960 | 0.802689 | 4.98E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene91522 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene91762 | 0.832113 | 1.14E-55 | -1.69E-46 |
| MS.gene050139 | MS.gene92763 | 0.838375 | 2.99E-57 | -1.69E-46 |
| MS.gene050139 | MS.gene96503 | 0.844364 | 7.91E-59 | -1.69E-46 |
| MS.gene050139 | MS.gene96507 | 0.825334 | 4.96E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050139.t1 | MTR_0219s0070 | 95.985 | 274 | 11 | 0 | 1 | 274 | 1 | 274 | 0.0 | 546 |
| MS.gene050139.t1 | MTR_1g062880 | 50.391 | 256 | 117 | 5 | 21 | 271 | 24 | 274 | 5.01e-91 | 271 |
| MS.gene050139.t1 | MTR_1g062860 | 47.273 | 275 | 138 | 4 | 1 | 270 | 3 | 275 | 7.50e-88 | 263 |
| MS.gene050139.t1 | MTR_7g090950 | 46.768 | 263 | 130 | 6 | 7 | 265 | 2 | 258 | 1.32e-77 | 236 |
| MS.gene050139.t1 | MTR_7g102960 | 47.970 | 271 | 123 | 8 | 4 | 267 | 8 | 267 | 6.82e-76 | 232 |
| MS.gene050139.t1 | MTR_1g059940 | 40.149 | 269 | 151 | 7 | 9 | 270 | 1 | 266 | 5.11e-63 | 199 |
| MS.gene050139.t1 | MTR_1g059960 | 40.074 | 272 | 149 | 8 | 6 | 270 | 2 | 266 | 1.25e-59 | 190 |
| MS.gene050139.t1 | MTR_1g059960 | 42.276 | 246 | 132 | 7 | 32 | 270 | 3 | 245 | 2.40e-59 | 189 |
| MS.gene050139.t1 | MTR_1g059900 | 42.640 | 197 | 107 | 4 | 80 | 270 | 4 | 200 | 6.14e-49 | 161 |
| MS.gene050139.t1 | MTR_0219s0130 | 77.419 | 62 | 14 | 0 | 207 | 268 | 3 | 64 | 3.77e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050139.t1 | AT1G08080 | 51.527 | 262 | 123 | 4 | 7 | 267 | 12 | 270 | 5.51e-96 | 283 |
| MS.gene050139.t1 | AT2G28210 | 49.265 | 272 | 131 | 5 | 1 | 267 | 1 | 270 | 8.34e-95 | 280 |
| MS.gene050139.t1 | AT1G08065 | 48.855 | 262 | 128 | 5 | 9 | 267 | 9 | 267 | 4.30e-84 | 253 |
| MS.gene050139.t1 | AT4G20990 | 43.561 | 264 | 140 | 4 | 5 | 265 | 3 | 260 | 7.14e-77 | 234 |
| MS.gene050139.t1 | AT5G04180 | 44.574 | 258 | 136 | 4 | 13 | 268 | 6 | 258 | 4.34e-70 | 218 |
| MS.gene050139.t1 | AT4G21000 | 41.951 | 205 | 114 | 2 | 27 | 231 | 28 | 227 | 1.20e-59 | 190 |
| MS.gene050139.t1 | AT3G52720 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.87e-59 | 191 |
| MS.gene050139.t1 | AT3G52720 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.87e-59 | 191 |
| MS.gene050139.t1 | AT3G52720 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.87e-59 | 191 |
| MS.gene050139.t1 | AT5G56330 | 42.149 | 242 | 96 | 4 | 29 | 267 | 133 | 333 | 1.09e-57 | 188 |
| MS.gene050139.t1 | AT5G56330 | 49.718 | 177 | 84 | 4 | 29 | 202 | 133 | 307 | 3.89e-53 | 175 |
| MS.gene050139.t1 | AT3G52720 | 38.362 | 232 | 129 | 6 | 7 | 231 | 4 | 228 | 7.79e-47 | 156 |
| MS.gene050139.t1 | AT2G28210 | 45.139 | 144 | 73 | 4 | 1 | 139 | 1 | 143 | 4.15e-38 | 132 |
Find 51 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTAAGCGGTTGTTTAA+TGG | 0.271511 | 4.1:+39701014 | None:intergenic |
| GTCCGCTAGGACCACCAAAT+TGG | 0.286327 | 4.1:-39703276 | MS.gene050139:CDS |
| ATCACTGCTATTTCATTCAA+TGG | 0.353262 | 4.1:+39701943 | None:intergenic |
| GGTTTAATGTGTCCCCAATT+TGG | 0.355550 | 4.1:+39703262 | None:intergenic |
| AGTGTTCAAATATCCAATTT+AGG | 0.360376 | 4.1:-39703178 | MS.gene050139:CDS |
| GTGTTGAAATTAATCTGATT+AGG | 0.362416 | 4.1:+39701686 | None:intergenic |
| CTTTGATCACTCAAATCAAT+TGG | 0.367575 | 4.1:+39703199 | None:intergenic |
| TCCGCTAGGACCACCAAATT+GGG | 0.369502 | 4.1:-39703275 | MS.gene050139:CDS |
| GATCTGAAGTGGTCCTAAAT+TGG | 0.370427 | 4.1:+39703165 | None:intergenic |
| GCCAGATCCATTCTTGTCAT+TGG | 0.370744 | 4.1:-39701896 | MS.gene050139:intron |
| GAACAGCAGCTTGAAGCAAT+TGG | 0.399825 | 4.1:+39701427 | None:intergenic |
| ATTGGAGTATTGTACACAAT+TGG | 0.400371 | 4.1:-39701922 | MS.gene050139:CDS |
| CCAACTTCTTGAGACATTGC+TGG | 0.422288 | 4.1:+39703525 | None:intergenic |
| AATGGCAAAGCTTACTTCAC+TGG | 0.426466 | 4.1:-39703595 | MS.gene050139:CDS |
| TTAGTGCAGCTGAACTATTA+TGG | 0.434897 | 4.1:-39700999 | MS.gene050139:CDS |
| GTTCGATCTAGAGTTACATT+TGG | 0.435599 | 4.1:-39701977 | MS.gene050139:CDS |
| CATATAGTTGGAAGATGACT+TGG | 0.440855 | 4.1:-39701762 | MS.gene050139:intron |
| TATGTACCTTACACCATTGA+TGG | 0.448047 | 4.1:+39702895 | None:intergenic |
| CATGTAGTGAAAATGTTACT+TGG | 0.454599 | 4.1:-39701622 | MS.gene050139:CDS |
| TTGAATGAAATAGCAGTGAT+TGG | 0.455753 | 4.1:-39701940 | MS.gene050139:CDS |
| CAACTTCTTGAGACATTGCT+GGG | 0.459401 | 4.1:+39703526 | None:intergenic |
| ACCAATGACAAGAATGGATC+TGG | 0.463795 | 4.1:+39701895 | None:intergenic |
| ACTGAGTTCAATTATGATGA+AGG | 0.476655 | 4.1:-39703301 | MS.gene050139:CDS |
| CCATCTGAACACACCATCAA+TGG | 0.480971 | 4.1:-39702908 | MS.gene050139:CDS |
| GCAATTTCTAATAATACTGC+CGG | 0.489055 | 4.1:-39701737 | MS.gene050139:CDS |
| TAAGTTACCAATGACAAGAA+TGG | 0.494347 | 4.1:+39701889 | None:intergenic |
| CTGGGCATGATGAAAGCAAA+AGG | 0.501092 | 4.1:+39703544 | None:intergenic |
| ATGAACTTCTACAGTTCCAT+TGG | 0.505066 | 4.1:-39702937 | MS.gene050139:CDS |
| TTAATGTGTCCCCAATTTGG+TGG | 0.505632 | 4.1:+39703265 | None:intergenic |
| CGGTTGTTTAATGGCTGCAA+TGG | 0.524998 | 4.1:+39701023 | None:intergenic |
| CAATTTCTAATAATACTGCC+GGG | 0.525292 | 4.1:-39701736 | MS.gene050139:CDS |
| CAGCTGAACTATTATGGAGC+TGG | 0.525652 | 4.1:-39700993 | MS.gene050139:CDS |
| ACCCACTGCTCTTTCTTCCC+CGG | 0.534827 | 4.1:+39701718 | None:intergenic |
| CCAGCAATGTCTCAAGAAGT+TGG | 0.535756 | 4.1:-39703525 | MS.gene050139:intron |
| AACACACCATCAATGGTGTA+AGG | 0.535872 | 4.1:-39702901 | MS.gene050139:intron |
| CCATTGATGGTGTGTTCAGA+TGG | 0.547509 | 4.1:+39702908 | None:intergenic |
| TACTTGGACAGTCATTAAAG+AGG | 0.550938 | 4.1:-39701606 | MS.gene050139:intron |
| ATAGTTGGAAGATGACTTGG+AGG | 0.569426 | 4.1:-39701759 | MS.gene050139:intron |
| TATGATGAAGGGAGTCCGCT+AGG | 0.573502 | 4.1:-39703289 | MS.gene050139:CDS |
| CTGAGTTCAATTATGATGAA+GGG | 0.578044 | 4.1:-39703300 | MS.gene050139:CDS |
| TCAAGCTATCTACAAATCGA+TGG | 0.578839 | 4.1:-39702968 | MS.gene050139:CDS |
| AAACAGGGGTCATGATGTCA+AGG | 0.587919 | 4.1:-39703113 | MS.gene050139:intron |
| GACACATTAAACCCAACGAA+TGG | 0.596322 | 4.1:-39703252 | MS.gene050139:CDS |
| GGATTGTAGTTGATCTGAAG+TGG | 0.602641 | 4.1:+39703154 | None:intergenic |
| GCCGGGGAAGAAAGAGCAGT+GGG | 0.625175 | 4.1:-39701719 | MS.gene050139:CDS |
| CCCCAATTTGGTGGTCCTAG+CGG | 0.627948 | 4.1:+39703274 | None:intergenic |
| GTTCAGATGGAGTATGCCAA+TGG | 0.641032 | 4.1:+39702921 | None:intergenic |
| CCGCTAGGACCACCAAATTG+GGG | 0.650035 | 4.1:-39703274 | MS.gene050139:CDS |
| AATAGTTCAGCTGCACTAAG+CGG | 0.662916 | 4.1:+39701003 | None:intergenic |
| TGCCGGGGAAGAAAGAGCAG+TGG | 0.668457 | 4.1:-39701720 | MS.gene050139:CDS |
| AATTTCTAATAATACTGCCG+GGG | 0.680545 | 4.1:-39701735 | MS.gene050139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAATTAGAAAATTAT+TGG | + | chr4.1:39701562-39701581 | None:intergenic | 10.0% |
| !! | AATTTCTAATAAAATAAATG+TGG | + | chr4.1:39703053-39703072 | None:intergenic | 10.0% |
| !! | ATAATTATCATAAATTAAGA+AGG | + | chr4.1:39701723-39701742 | None:intergenic | 10.0% |
| !! | TAATTATCATAAATTAAGAA+GGG | + | chr4.1:39701722-39701741 | None:intergenic | 10.0% |
| !!! | AAAAGAGTATAAAATTAAAT+GGG | + | chr4.1:39703096-39703115 | None:intergenic | 10.0% |
| !!! | AACATTTTTTATTCATATTT+AGG | + | chr4.1:39701126-39701145 | None:intergenic | 10.0% |
| !!! | ACATTTTTTATTCATATTTA+GGG | + | chr4.1:39701125-39701144 | None:intergenic | 10.0% |
| !!! | TATTTGTTATTTATTTTGTA+GGG | + | chr4.1:39702102-39702121 | None:intergenic | 10.0% |
| !! | TTATTCAATGAATTTGAAAA+CGG | + | chr4.1:39701226-39701245 | None:intergenic | 15.0% |
| !!! | AAAAAAGTATTATAGATACA+TGG | - | chr4.1:39702917-39702936 | MS.gene050139:CDS | 15.0% |
| !!! | AAAAAGTATTATAGATACAT+GGG | - | chr4.1:39702918-39702937 | MS.gene050139:CDS | 15.0% |
| !!! | AATTCATTTTTTCTATGAAT+AGG | - | chr4.1:39701572-39701591 | MS.gene050139:intron | 15.0% |
| !!! | ATATTTTTTGACAAAATGTA+AGG | + | chr4.1:39702469-39702488 | None:intergenic | 15.0% |
| !!! | GAAAAGAGTATAAAATTAAA+TGG | + | chr4.1:39703097-39703116 | None:intergenic | 15.0% |
| !!! | GTATTTGTTATTTATTTTGT+AGG | + | chr4.1:39702103-39702122 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+TGG | - | chr4.1:39703362-39703381 | MS.gene050139:intron | 15.0% |
| !! | AAGGCAAAAAAAAAACTTTA+TGG | + | chr4.1:39702450-39702469 | None:intergenic | 20.0% |
| !! | ATACTAGTGAACATAATTAA+GGG | - | chr4.1:39701953-39701972 | MS.gene050139:CDS | 20.0% |
| !! | ATGAATTAGAAAATTATTGG+AGG | + | chr4.1:39701559-39701578 | None:intergenic | 20.0% |
| !! | CGTAAATATGTAAAAACAAA+AGG | + | chr4.1:39701853-39701872 | None:intergenic | 20.0% |
| !! | GATTTATAAACAAGATAGAT+TGG | + | chr4.1:39703464-39703483 | None:intergenic | 20.0% |
| !! | TGTTTATACATGATATTGTA+CGG | + | chr4.1:39701197-39701216 | None:intergenic | 20.0% |
| !!! | AAATTCTAAGATGGTATTAA+AGG | - | chr4.1:39702248-39702267 | MS.gene050139:intron | 20.0% |
| !!! | CTAATAATTAAATTTGTTGC+AGG | - | chr4.1:39702581-39702600 | MS.gene050139:intron | 20.0% |
| !!! | TAAAACTTTGAAGCTAATAT+TGG | + | chr4.1:39702135-39702154 | None:intergenic | 20.0% |
| !!! | TATTTGTTGTTAGAAGATTT+GGG | - | chr4.1:39701792-39701811 | MS.gene050139:intron | 20.0% |
| !!! | TTAATACCATCTTAGAATTT+TGG | + | chr4.1:39702248-39702267 | None:intergenic | 20.0% |
| !!! | TTAGCTTCAAAGTTTTATAT+TGG | - | chr4.1:39702138-39702157 | MS.gene050139:intron | 20.0% |
| !!! | TTATTTGTTGTTAGAAGATT+TGG | - | chr4.1:39701791-39701810 | MS.gene050139:intron | 20.0% |
| !!! | TTTATGGTGTTTTAGAATTT+GGG | + | chr4.1:39702434-39702453 | None:intergenic | 20.0% |
| ! | AAAACTAAGTATCCAAGAAA+AGG | + | chr4.1:39702336-39702355 | None:intergenic | 25.0% |
| ! | AAAAGAACTCATGCAAAATA+TGG | + | chr4.1:39703228-39703247 | None:intergenic | 25.0% |
| ! | AAAAGGTTATATCTCATCTA+AGG | + | chr4.1:39702319-39702338 | None:intergenic | 25.0% |
| ! | ACAAAACAGCTAAGAAAAAA+AGG | + | chr4.1:39701092-39701111 | None:intergenic | 25.0% |
| ! | AGTGTTCAAATATCCAATTT+AGG | - | chr4.1:39701402-39701421 | MS.gene050139:intron | 25.0% |
| ! | ATTTAACTACCCAACTATAT+GGG | + | chr4.1:39702547-39702566 | None:intergenic | 25.0% |
| ! | CATACTAGTGAACATAATTA+AGG | - | chr4.1:39701952-39701971 | MS.gene050139:CDS | 25.0% |
| ! | CATATGTTTGTAAGTAATGA+CGG | - | chr4.1:39702178-39702197 | MS.gene050139:intron | 25.0% |
| ! | GTGTTGAAATTAATCTGATT+AGG | + | chr4.1:39702897-39702916 | None:intergenic | 25.0% |
| ! | TAATATTATGCTATGAAGCA+CGG | + | chr4.1:39703435-39703454 | None:intergenic | 25.0% |
| ! | TAATGCAACTCTTAAAAACA+GGG | - | chr4.1:39701452-39701471 | MS.gene050139:CDS | 25.0% |
| ! | TATTTAACTACCCAACTATA+TGG | + | chr4.1:39702548-39702567 | None:intergenic | 25.0% |
| ! | TCATTACTTACAAACATATG+TGG | + | chr4.1:39702178-39702197 | None:intergenic | 25.0% |
| ! | TTATAGATTTAATTCACGCT+GGG | + | chr4.1:39702023-39702042 | None:intergenic | 25.0% |
| ! | TTCATAATATCTATGTAGCA+CGG | - | chr4.1:39703248-39703267 | MS.gene050139:CDS | 25.0% |
| !! | AAGTAACATTTTCACTACAT+GGG | + | chr4.1:39702959-39702978 | None:intergenic | 25.0% |
| !! | ATCACGCATATAGTTTTTAT+TGG | - | chr4.1:39702517-39702536 | MS.gene050139:intron | 25.0% |
| !! | ATTAAGGGAATGAACAATTT+TGG | - | chr4.1:39701968-39701987 | MS.gene050139:CDS | 25.0% |
| !!! | CTTCATCTTTTTCATATAGT+TGG | - | chr4.1:39702806-39702825 | MS.gene050139:intron | 25.0% |
| !!! | CTTTATGGTGTTTTAGAATT+TGG | + | chr4.1:39702435-39702454 | None:intergenic | 25.0% |
| !!! | GAAACTAAGTTTTAAGATGA+GGG | + | chr4.1:39702204-39702223 | None:intergenic | 25.0% |
| !!! | TGAAACTAAGTTTTAAGATG+AGG | + | chr4.1:39702205-39702224 | None:intergenic | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | + | chr4.1:39701450-39701469 | None:intergenic | 25.0% |
| AAATTAAATGGGAAGATAGC+TGG | + | chr4.1:39703085-39703104 | None:intergenic | 30.0% | |
| AAGTTAAGGTATATTGTGGT+TGG | + | chr4.1:39703511-39703530 | None:intergenic | 30.0% | |
| AATGCAACTCTTAAAAACAG+GGG | - | chr4.1:39701453-39701472 | MS.gene050139:CDS | 30.0% | |
| AATTTCTAATAATACTGCCG+GGG | - | chr4.1:39702845-39702864 | MS.gene050139:intron | 30.0% | |
| ACAATATACCTTAACTTTGC+AGG | - | chr4.1:39703514-39703533 | MS.gene050139:intron | 30.0% | |
| ACTGAGTTCAATTATGATGA+AGG | - | chr4.1:39701279-39701298 | MS.gene050139:intron | 30.0% | |
| ATCAATCCTCACATACAAAT+CGG | - | chr4.1:39702382-39702401 | MS.gene050139:intron | 30.0% | |
| CAATTTCTAATAATACTGCC+GGG | - | chr4.1:39702844-39702863 | MS.gene050139:intron | 30.0% | |
| CATGTAGTGAAAATGTTACT+TGG | - | chr4.1:39702958-39702977 | MS.gene050139:CDS | 30.0% | |
| CTAATGCAACTCTTAAAAAC+AGG | - | chr4.1:39701451-39701470 | MS.gene050139:CDS | 30.0% | |
| CTGAGTTCAATTATGATGAA+GGG | - | chr4.1:39701280-39701299 | MS.gene050139:intron | 30.0% | |
| CTTTGATCACTCAAATCAAT+TGG | + | chr4.1:39701384-39701403 | None:intergenic | 30.0% | |
| GCAATTTCTAATAATACTGC+CGG | - | chr4.1:39702843-39702862 | MS.gene050139:intron | 30.0% | |
| GGCTTAATGACTTTCTTATA+AGG | - | chr4.1:39701813-39701832 | MS.gene050139:intron | 30.0% | |
| GTTATAGATTTAATTCACGC+TGG | + | chr4.1:39702024-39702043 | None:intergenic | 30.0% | |
| TAAGTTACCAATGACAAGAA+TGG | + | chr4.1:39702694-39702713 | None:intergenic | 30.0% | |
| TGCAAAGTTAAGGTATATTG+TGG | + | chr4.1:39703515-39703534 | None:intergenic | 30.0% | |
| TGTACGGAATAAAAAGTTGT+AGG | + | chr4.1:39701181-39701200 | None:intergenic | 30.0% | |
| TTGAATGAAATAGCAGTGAT+TGG | - | chr4.1:39702640-39702659 | MS.gene050139:intron | 30.0% | |
| TTTCCAAACTAATCGTTTCT+TGG | + | chr4.1:39702363-39702382 | None:intergenic | 30.0% | |
| ! | AGTAACATTTTCACTACATG+GGG | + | chr4.1:39702958-39702977 | None:intergenic | 30.0% |
| ! | ATATTTGATGACATTTGCAG+AGG | - | chr4.1:39701251-39701270 | MS.gene050139:intron | 30.0% |
| ! | CAAGTAACATTTTCACTACA+TGG | + | chr4.1:39702960-39702979 | None:intergenic | 30.0% |
| ! | GAATGGTTTTTGTGCAAAAA+TGG | - | chr4.1:39701345-39701364 | MS.gene050139:intron | 30.0% |
| ! | GATCAACCAAAATTCTAAGA+TGG | - | chr4.1:39702239-39702258 | MS.gene050139:intron | 30.0% |
| ! | GATGAGATATAACCTTTTCT+TGG | - | chr4.1:39702321-39702340 | MS.gene050139:intron | 30.0% |
| ! | TATACTCTTTTCAACTGACT+AGG | - | chr4.1:39703105-39703124 | MS.gene050139:intron | 30.0% |
| !! | ATCACTGCTATTTCATTCAA+TGG | + | chr4.1:39702640-39702659 | None:intergenic | 30.0% |
| !! | ATTGGAGTATTGTACACAAT+TGG | - | chr4.1:39702658-39702677 | MS.gene050139:intron | 30.0% |
| !! | GTTTTTAAGAGTTGCATTAG+AGG | + | chr4.1:39701451-39701470 | None:intergenic | 30.0% |
| !!! | CACCACTTAACTAGTTTTAT+TGG | - | chr4.1:39703027-39703046 | MS.gene050139:intron | 30.0% |
| AGATGGTATTAAAGGCAATC+TGG | - | chr4.1:39702256-39702275 | MS.gene050139:intron | 35.0% | |
| ATGAACTTCTACAGTTCCAT+TGG | - | chr4.1:39701643-39701662 | MS.gene050139:CDS | 35.0% | |
| CATATAGTTGGAAGATGACT+TGG | - | chr4.1:39702818-39702837 | MS.gene050139:intron | 35.0% | |
| GATGGTATTAAAGGCAATCT+GGG | - | chr4.1:39702257-39702276 | MS.gene050139:intron | 35.0% | |
| GGCCAATAAAACTAGTTAAG+TGG | + | chr4.1:39703032-39703051 | None:intergenic | 35.0% | |
| TAAGGTATATTGTGGTTGGT+TGG | + | chr4.1:39703507-39703526 | None:intergenic | 35.0% | |
| TACTTGGACAGTCATTAAAG+AGG | - | chr4.1:39702974-39702993 | MS.gene050139:CDS | 35.0% | |
| TATGTACCTTACACCATTGA+TGG | + | chr4.1:39701688-39701707 | None:intergenic | 35.0% | |
| TCAAGCTATCTACAAATCGA+TGG | - | chr4.1:39701612-39701631 | MS.gene050139:CDS | 35.0% | |
| TTAGTGCAGCTGAACTATTA+TGG | - | chr4.1:39703581-39703600 | MS.gene050139:CDS | 35.0% | |
| TTGCACAAAAACCATTCGTT+GGG | + | chr4.1:39701342-39701361 | None:intergenic | 35.0% | |
| TTTGCACAAAAACCATTCGT+TGG | + | chr4.1:39701343-39701362 | None:intergenic | 35.0% | |
| ! | AGGGAATGAACAATTTTGGA+AGG | - | chr4.1:39701972-39701991 | MS.gene050139:CDS | 35.0% |
| ! | GATCCAAGAAACGATTAGTT+TGG | - | chr4.1:39702357-39702376 | MS.gene050139:intron | 35.0% |
| ! | GTAACATTTTCACTACATGG+GGG | + | chr4.1:39702957-39702976 | None:intergenic | 35.0% |
| ! | GTTCGATCTAGAGTTACATT+TGG | - | chr4.1:39702603-39702622 | MS.gene050139:intron | 35.0% |
| !! | ACTAAACCGATTTGTATGTG+AGG | + | chr4.1:39702391-39702410 | None:intergenic | 35.0% |
| !!! | TGGTGTTTTAGAATTTGGGT+TGG | + | chr4.1:39702430-39702449 | None:intergenic | 35.0% |
| AACACACCATCAATGGTGTA+AGG | - | chr4.1:39701679-39701698 | MS.gene050139:CDS | 40.0% | |
| AATAGTTCAGCTGCACTAAG+CGG | + | chr4.1:39703580-39703599 | None:intergenic | 40.0% | |
| ACCAATGACAAGAATGGATC+TGG | + | chr4.1:39702688-39702707 | None:intergenic | 40.0% | |
| ATGGGAAGATAGCTGGTAAA+AGG | + | chr4.1:39703078-39703097 | None:intergenic | 40.0% | |
| ATTGGATCGCCCATATAGTT+GGG | - | chr4.1:39702535-39702554 | MS.gene050139:intron | 40.0% | |
| CAACTTCTTGAGACATTGCT+GGG | + | chr4.1:39701057-39701076 | None:intergenic | 40.0% | |
| CATAGATACCAGATACGACA+CGG | + | chr4.1:39703405-39703424 | None:intergenic | 40.0% | |
| GACACATTAAACCCAACGAA+TGG | - | chr4.1:39701328-39701347 | MS.gene050139:intron | 40.0% | |
| GGATTGTAGTTGATCTGAAG+TGG | + | chr4.1:39701429-39701448 | None:intergenic | 40.0% | |
| GGTTTAATGTGTCCCCAATT+TGG | + | chr4.1:39701321-39701340 | None:intergenic | 40.0% | |
| GTCATAGTCCTGCAAAGTTA+AGG | + | chr4.1:39703525-39703544 | None:intergenic | 40.0% | |
| TATTGGATCGCCCATATAGT+TGG | - | chr4.1:39702534-39702553 | MS.gene050139:intron | 40.0% | |
| TGCACTAAGCGGTTGTTTAA+TGG | + | chr4.1:39703569-39703588 | None:intergenic | 40.0% | |
| TGTCAGTGTTGTGTAAGTGT+CGG | + | chr4.1:39703320-39703339 | None:intergenic | 40.0% | |
| TTAATGTGTCCCCAATTTGG+TGG | + | chr4.1:39701318-39701337 | None:intergenic | 40.0% | |
| ! | ATAGTTGGAAGATGACTTGG+AGG | - | chr4.1:39702821-39702840 | MS.gene050139:intron | 40.0% |
| ! | GATCTGAAGTGGTCCTAAAT+TGG | + | chr4.1:39701418-39701437 | None:intergenic | 40.0% |
| !! | TATTAATGGTGTCGACGTGT+CGG | - | chr4.1:39703376-39703395 | MS.gene050139:intron | 40.0% |
| AAACAGGGGTCATGATGTCA+AGG | - | chr4.1:39701467-39701486 | MS.gene050139:intron | 45.0% | |
| CAGCTGAACTATTATGGAGC+TGG | - | chr4.1:39703587-39703606 | MS.gene050139:CDS | 45.0% | |
| CCAACTTCTTGAGACATTGC+TGG | + | chr4.1:39701058-39701077 | None:intergenic | 45.0% | |
| CCAGCAATGTCTCAAGAAGT+TGG | - | chr4.1:39701055-39701074 | MS.gene050139:intron | 45.0% | |
| CCATCTGAACACACCATCAA+TGG | - | chr4.1:39701672-39701691 | MS.gene050139:CDS | 45.0% | |
| CGGTTGTTTAATGGCTGCAA+TGG | + | chr4.1:39703560-39703579 | None:intergenic | 45.0% | |
| CTGGGCATGATGAAAGCAAA+AGG | + | chr4.1:39701039-39701058 | None:intergenic | 45.0% | |
| GAACAGCAGCTTGAAGCAAT+TGG | + | chr4.1:39703156-39703175 | None:intergenic | 45.0% | |
| GCCAGATCCATTCTTGTCAT+TGG | - | chr4.1:39702684-39702703 | MS.gene050139:intron | 45.0% | |
| GTTCAGATGGAGTATGCCAA+TGG | + | chr4.1:39701662-39701681 | None:intergenic | 45.0% | |
| TATGTAGCACGGACACTTCT+CGG | - | chr4.1:39703259-39703278 | MS.gene050139:CDS | 45.0% | |
| !! | CCATTGATGGTGTGTTCAGA+TGG | + | chr4.1:39701675-39701694 | None:intergenic | 45.0% |
| CTGGGTCTCTCAAAGCTTGA+AGG | - | chr4.1:39702275-39702294 | MS.gene050139:intron | 50.0% | |
| GATTAGGCGTGTCTCGATGT+CGG | - | chr4.1:39703281-39703300 | MS.gene050139:CDS | 50.0% | |
| TATGATGAAGGGAGTCCGCT+AGG | - | chr4.1:39701291-39701310 | MS.gene050139:intron | 50.0% | |
| TCCGCTAGGACCACCAAATT+GGG | - | chr4.1:39701305-39701324 | MS.gene050139:intron | 50.0% | |
| ACCCACTGCTCTTTCTTCCC+CGG | + | chr4.1:39702865-39702884 | None:intergenic | 55.0% | |
| CCGCTAGGACCACCAAATTG+GGG | - | chr4.1:39701306-39701325 | MS.gene050139:intron | 55.0% | |
| GCACGGACACTTCTCGGATT+AGG | - | chr4.1:39703265-39703284 | MS.gene050139:CDS | 55.0% | |
| GTCCGCTAGGACCACCAAAT+TGG | - | chr4.1:39701304-39701323 | MS.gene050139:intron | 55.0% | |
| ! | CCCCAATTTGGTGGTCCTAG+CGG | + | chr4.1:39701309-39701328 | None:intergenic | 55.0% |
| GCCGGGGAAGAAAGAGCAGT+GGG | - | chr4.1:39702861-39702880 | MS.gene050139:intron | 60.0% | |
| TGCCGGGGAAGAAAGAGCAG+TGG | - | chr4.1:39702860-39702879 | MS.gene050139:intron | 60.0% | |
| ! | GTCGGTGTCCGTGTCGTATC+TGG | - | chr4.1:39703394-39703413 | MS.gene050139:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39700986 | 39703616 | 39700986 | ID=MS.gene050139 |
| chr4.1 | mRNA | 39700986 | 39703616 | 39700986 | ID=MS.gene050139.t1;Parent=MS.gene050139 |
| chr4.1 | exon | 39703526 | 39703616 | 39703526 | ID=MS.gene050139.t1.exon1;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39703526 | 39703616 | 39703526 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| chr4.1 | exon | 39703114 | 39703331 | 39703114 | ID=MS.gene050139.t1.exon2;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39703114 | 39703331 | 39703114 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| chr4.1 | exon | 39702902 | 39703008 | 39702902 | ID=MS.gene050139.t1.exon3;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39702902 | 39703008 | 39702902 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| chr4.1 | exon | 39701897 | 39701999 | 39701897 | ID=MS.gene050139.t1.exon4;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39701897 | 39701999 | 39701897 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| chr4.1 | exon | 39701607 | 39701777 | 39701607 | ID=MS.gene050139.t1.exon5;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39701607 | 39701777 | 39701607 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| chr4.1 | exon | 39701422 | 39701475 | 39701422 | ID=MS.gene050139.t1.exon6;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39701422 | 39701475 | 39701422 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| chr4.1 | exon | 39700986 | 39701066 | 39700986 | ID=MS.gene050139.t1.exon7;Parent=MS.gene050139.t1 |
| chr4.1 | CDS | 39700986 | 39701066 | 39700986 | ID=cds.MS.gene050139.t1;Parent=MS.gene050139.t1 |
| Gene Sequence |
| Protein sequence |
