Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08689.t1 | XP_003606365.1 | 99.6 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 1.60E-139 | 505.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08689.t1 | A2RVK7 | 73.2 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 3.8e-105 | 382.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08689.t1 | G7JND2 | 99.6 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 1.2e-139 | 505.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08689 | MS.gene22822 | PPI |
MS.gene050621 | MS.gene08689 | PPI |
MS.gene025936 | MS.gene08689 | PPI |
MS.gene024471 | MS.gene08689 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08689.t1 | MTR_4g058720 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 531 |
MS.gene08689.t1 | MTR_7g116920 | 32.432 | 222 | 145 | 3 | 33 | 249 | 10 | 231 | 2.87e-30 | 113 |
MS.gene08689.t1 | MTR_7g116920 | 32.683 | 205 | 133 | 3 | 50 | 249 | 9 | 213 | 5.46e-28 | 107 |
MS.gene08689.t1 | MTR_7g076910 | 33.333 | 162 | 100 | 3 | 33 | 192 | 5 | 160 | 5.52e-18 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08689.t1 | AT4G27490 | 73.152 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 6.19e-143 | 401 |
MS.gene08689.t1 | AT4G27490 | 73.152 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 6.19e-143 | 401 |
MS.gene08689.t1 | AT4G27490 | 73.152 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 6.19e-143 | 401 |
MS.gene08689.t1 | AT4G27490 | 77.358 | 212 | 47 | 1 | 45 | 256 | 4 | 214 | 1.05e-123 | 351 |
MS.gene08689.t1 | AT4G27490 | 71.123 | 187 | 53 | 1 | 1 | 186 | 1 | 187 | 1.02e-95 | 279 |
MS.gene08689.t1 | AT4G27490 | 71.123 | 187 | 53 | 1 | 1 | 186 | 1 | 187 | 1.02e-95 | 279 |
MS.gene08689.t1 | AT4G27490 | 71.123 | 187 | 53 | 1 | 1 | 186 | 1 | 187 | 1.02e-95 | 279 |
MS.gene08689.t1 | AT3G61620 | 31.532 | 222 | 147 | 3 | 33 | 249 | 10 | 231 | 9.78e-29 | 109 |
MS.gene08689.t1 | AT3G61620 | 31.532 | 222 | 147 | 3 | 33 | 249 | 10 | 231 | 9.78e-29 | 109 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
MS.gene08689.t1 | AT3G46210 | 34.356 | 163 | 97 | 5 | 33 | 192 | 5 | 160 | 8.37e-17 | 77.8 |
Find 65 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCGGACCTCATTAATCTTT+GGG | 0.282666 | 4.4:+45017108 | None:intergenic |
AGGCGGACCTCATTAATCTT+TGG | 0.300741 | 4.4:+45017107 | None:intergenic |
TTTGGAGGGTGCAATAATAT+TGG | 0.333785 | 4.4:-45019167 | MS.gene08689:CDS |
GGATCTGCTTATGCTGAGTT+TGG | 0.336443 | 4.4:-45019560 | MS.gene08689:CDS |
ATTGCCTTCTTGCTCTCTCT+TGG | 0.344667 | 4.4:+45019399 | None:intergenic |
TTCAACTCCGGTTCGTGGAC+AGG | 0.376488 | 4.4:-45019325 | MS.gene08689:intron |
TTCGATGCTTCATAAAGCTT+TGG | 0.379648 | 4.4:-45019185 | MS.gene08689:CDS |
GAAACCACGGCCATCGGGTC+GGG | 0.381446 | 4.4:+45020479 | None:intergenic |
AAAACATCCACAGTGGTCTT+GGG | 0.383967 | 4.4:+45019136 | None:intergenic |
ATCACCCAACTGACAGTTAC+CGG | 0.402501 | 4.4:-45017143 | MS.gene08689:CDS |
GCAATGATGTACAGTGATAC+AGG | 0.416564 | 4.4:-45019381 | MS.gene08689:CDS |
CGTCATTGATCCTATATTTG+AGG | 0.429457 | 4.4:-45017222 | MS.gene08689:CDS |
GGTGCTGTGAATGCTGCATC+AGG | 0.440274 | 4.4:-45019581 | MS.gene08689:CDS |
GCAGGGGATGCAGCTGTGCT+TGG | 0.440538 | 4.4:-45016728 | MS.gene08689:intron |
CTAGCAACCGATATGACAAC+TGG | 0.441517 | 4.4:+45017818 | None:intergenic |
GCATCGAACTGTACTCTTTG+TGG | 0.445785 | 4.4:+45019200 | None:intergenic |
TGCTTCTCAAGGAAGAAGAT+TGG | 0.451632 | 4.4:-45020503 | MS.gene08689:CDS |
TACTCACCGTCTCTGACAAC+CGG | 0.464034 | 4.4:-45020540 | MS.gene08689:CDS |
ATCGGTTGCTAGTCTTGCCT+TGG | 0.469618 | 4.4:-45017807 | MS.gene08689:CDS |
GATGCTTCATAAAGCTTTGG+AGG | 0.481702 | 4.4:-45019182 | MS.gene08689:CDS |
CAAAGCTTGCTAAGATTATG+AGG | 0.489962 | 4.4:-45016696 | MS.gene08689:CDS |
TGGACCCGACCCGATGGCCG+TGG | 0.491907 | 4.4:-45020483 | MS.gene08689:CDS |
TTGGGAATGGCCGGCAAAAG+TGG | 0.492601 | 4.4:-45020579 | None:intergenic |
TAATATACCTGTCCACGAAC+CGG | 0.492612 | 4.4:+45019318 | None:intergenic |
TAATCATTAAGCTTCCATCT+TGG | 0.496219 | 4.4:+45017189 | None:intergenic |
CTGGTGGAAACCACGGCCAT+CGG | 0.497666 | 4.4:+45020473 | None:intergenic |
GGAAACCACGGCCATCGGGT+CGG | 0.497786 | 4.4:+45020478 | None:intergenic |
TGGTGGAAACCACGGCCATC+GGG | 0.498963 | 4.4:+45020474 | None:intergenic |
TGATCTCCCAGTTGTCATAT+CGG | 0.507012 | 4.4:-45017825 | MS.gene08689:CDS |
TTCGCCGGTAACTGTCAGTT+GGG | 0.515084 | 4.4:+45017139 | None:intergenic |
GACCTCATTAATCTTTGGGG+TGG | 0.519184 | 4.4:+45017112 | None:intergenic |
AAGGTCATACATCAGTATTC+CGG | 0.520451 | 4.4:+45017778 | None:intergenic |
TCACACAGATACAATGACTT+TGG | 0.523678 | 4.4:+45019532 | None:intergenic |
AGTCTTGCCTTGGCAGATGC+CGG | 0.528894 | 4.4:-45017797 | MS.gene08689:CDS |
CTTTGGGGTGGACCATTCGC+CGG | 0.530416 | 4.4:+45017124 | None:intergenic |
TAATGATTCCAGTCATGTCT+CGG | 0.532516 | 4.4:-45017254 | MS.gene08689:intron |
GAGGAGGAAAACTGCCAAGA+TGG | 0.537446 | 4.4:-45017203 | MS.gene08689:CDS |
AGAATCTGCTTCTGATGCAC+AGG | 0.537718 | 4.4:-45016662 | MS.gene08689:CDS |
ACACCGCCGTTGGGAATGGC+CGG | 0.541283 | 4.4:-45020588 | None:intergenic |
ATTCGCCGGTAACTGTCAGT+TGG | 0.542035 | 4.4:+45017138 | None:intergenic |
TCTTCTTCCTTGAGAAGCAG+TGG | 0.551293 | 4.4:+45020507 | None:intergenic |
CGGCAAAAGTGGAACGACTC+CGG | 0.565948 | 4.4:-45020568 | MS.gene08689:CDS |
AAAGAAACCACTGCTTCTCA+AGG | 0.571189 | 4.4:-45020514 | MS.gene08689:CDS |
GAAGATTGGACCCGACCCGA+TGG | 0.573254 | 4.4:-45020489 | MS.gene08689:CDS |
AAACATCCACAGTGGTCTTG+GGG | 0.573612 | 4.4:+45019137 | None:intergenic |
GCTTACAAGCGGGTCTACAC+TGG | 0.579283 | 4.4:+45020454 | None:intergenic |
ATGCTTCATAAAGCTTTGGA+GGG | 0.579684 | 4.4:-45019181 | MS.gene08689:CDS |
GTCTACACTGGTGGAAACCA+CGG | 0.581502 | 4.4:+45020466 | None:intergenic |
CAGTATTCCGGCATCTGCCA+AGG | 0.585424 | 4.4:+45017790 | None:intergenic |
TACAAGCGGGTCTACACTGG+TGG | 0.590371 | 4.4:+45020457 | None:intergenic |
CCTTGTCGCCTCAGTTTCAG+TGG | 0.591419 | 4.4:-45017759 | MS.gene08689:intron |
AATTCATACCACTGAAACTG+AGG | 0.596309 | 4.4:+45017751 | None:intergenic |
CAATGATGTACAGTGATACA+GGG | 0.609152 | 4.4:-45019380 | MS.gene08689:CDS |
AACTGACAGTTACCGGCGAA+TGG | 0.609296 | 4.4:-45017136 | MS.gene08689:CDS |
CATTGATCCTATATTTGAGG+AGG | 0.611322 | 4.4:-45017219 | MS.gene08689:CDS |
CCACTGAAACTGAGGCGACA+AGG | 0.615029 | 4.4:+45017759 | None:intergenic |
GCGGACCTCATTAATCTTTG+GGG | 0.618854 | 4.4:+45017109 | None:intergenic |
GTCCACCCCAAAGATTAATG+AGG | 0.632706 | 4.4:-45017114 | MS.gene08689:intron |
TGGGTGATTTCATAGCGAGA+AGG | 0.637919 | 4.4:+45017158 | None:intergenic |
AGAGACGGTGAGTATGTCGC+CGG | 0.644092 | 4.4:+45020549 | None:intergenic |
TGGGCCAAGAGAGAGCAAGA+AGG | 0.650542 | 4.4:-45019403 | MS.gene08689:CDS |
GCATTGGTGCTGGAATCTAG+TGG | 0.655397 | 4.4:-45019112 | MS.gene08689:CDS |
CAAATATAGGATCAATGACG+AGG | 0.670852 | 4.4:+45017225 | None:intergenic |
TTCTTTCCCCAAGACCACTG+TGG | 0.680542 | 4.4:-45019143 | MS.gene08689:CDS |
TAGCAACCGATATGACAACT+GGG | 0.691620 | 4.4:+45017819 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAATAATAAATTATT+AGG | + | chr4.4:45016827-45016846 | None:intergenic | 0.0% |
!! | AAATAAATAATAAATTATTA+GGG | + | chr4.4:45016826-45016845 | None:intergenic | 0.0% |
!! | ATAAAACATATATAGATTAA+TGG | - | chr4.4:45020379-45020398 | MS.gene08689:intron | 10.0% |
!! | GTCAAAAAAAAAAAAAATTA+AGG | + | chr4.4:45019854-45019873 | None:intergenic | 10.0% |
!! | TAAAACATATATAGATTAAT+GGG | - | chr4.4:45020380-45020399 | MS.gene08689:intron | 10.0% |
!! | AAAATAAACAAGATATGATA+AGG | + | chr4.4:45017957-45017976 | None:intergenic | 15.0% |
!! | ATCATAAAGAAATATTTCTT+TGG | - | chr4.4:45019215-45019234 | MS.gene08689:intron | 15.0% |
!! | CTAAAATATAAGCAAAAAAT+GGG | - | chr4.4:45016978-45016997 | MS.gene08689:intron | 15.0% |
!! | TAATTAGCTAAATGAAAATA+TGG | + | chr4.4:45018367-45018386 | None:intergenic | 15.0% |
!! | TACCTTAATTTATATAGTAA+AGG | + | chr4.4:45019141-45019160 | None:intergenic | 15.0% |
!! | TTTACTATATAAATTAAGGT+AGG | - | chr4.4:45019140-45019159 | MS.gene08689:CDS | 15.0% |
!!! | AATCTATATATGTTTTATTG+CGG | + | chr4.4:45020377-45020396 | None:intergenic | 15.0% |
!!! | ATTATTTTCTCCTAAATTTT+AGG | + | chr4.4:45018962-45018981 | None:intergenic | 15.0% |
!!! | CATTTTTTGCTTATATTTTA+GGG | + | chr4.4:45016979-45016998 | None:intergenic | 15.0% |
!!! | TTATTTTCTCCTAAATTTTA+GGG | + | chr4.4:45018961-45018980 | None:intergenic | 15.0% |
!! | AAAAATTAAGGAATAGTTCA+TGG | + | chr4.4:45019842-45019861 | None:intergenic | 20.0% |
!! | CAATTGGATTAATCAAATTA+AGG | + | chr4.4:45020422-45020441 | None:intergenic | 20.0% |
!! | CACCTTTACTATATAAATTA+AGG | - | chr4.4:45019136-45019155 | MS.gene08689:CDS | 20.0% |
!! | CCTAAAATATAAGCAAAAAA+TGG | - | chr4.4:45016977-45016996 | MS.gene08689:intron | 20.0% |
!! | GTAAATTAAAAACGTGAAAT+AGG | + | chr4.4:45020179-45020198 | None:intergenic | 20.0% |
!! | TCTTTAATTATTAAGCATGA+CGG | + | chr4.4:45017175-45017194 | None:intergenic | 20.0% |
!!! | AAGGATCGTATTTAATATTT+TGG | - | chr4.4:45019273-45019292 | MS.gene08689:intron | 20.0% |
!!! | AATTTTTTAGATTGTTTGAC+TGG | - | chr4.4:45018883-45018902 | MS.gene08689:intron | 20.0% |
!!! | ACTGTTTTTTATTTATTCTG+TGG | - | chr4.4:45019704-45019723 | MS.gene08689:intron | 20.0% |
!!! | ATAATTTTGCAGATTTTTCT+GGG | - | chr4.4:45019113-45019132 | MS.gene08689:CDS | 20.0% |
!!! | CCATTTTTTGCTTATATTTT+AGG | + | chr4.4:45016980-45016999 | None:intergenic | 20.0% |
!!! | TAGCATGGTTTTTTAAATTA+TGG | - | chr4.4:45020314-45020333 | MS.gene08689:intron | 20.0% |
!!! | TTTCATTAGTTTTTGTTTGT+TGG | - | chr4.4:45017771-45017790 | MS.gene08689:CDS | 20.0% |
! | AATTGCACAACAAATATAGA+TGG | - | chr4.4:45020437-45020456 | MS.gene08689:intron | 25.0% |
! | AGACTAAAAATAAGTGTACA+AGG | - | chr4.4:45017122-45017141 | MS.gene08689:CDS | 25.0% |
! | ATTTAAAAAAGATGGAGAAC+AGG | + | chr4.4:45020137-45020156 | None:intergenic | 25.0% |
! | ATTTAAATCAATTGCAACTC+TGG | + | chr4.4:45019302-45019321 | None:intergenic | 25.0% |
! | CATTTAGCTAATTAATCATG+AGG | - | chr4.4:45018373-45018392 | MS.gene08689:intron | 25.0% |
! | CGACAATAGTTTGATAAAAA+AGG | - | chr4.4:45017205-45017224 | MS.gene08689:CDS | 25.0% |
! | GAAAGATCAACCAATAAAAA+TGG | + | chr4.4:45019767-45019786 | None:intergenic | 25.0% |
! | GTGATTCTCTCTAAATATTA+AGG | + | chr4.4:45020352-45020371 | None:intergenic | 25.0% |
! | GTTTGATAAAAAAGGATTTG+TGG | - | chr4.4:45017213-45017232 | MS.gene08689:CDS | 25.0% |
! | TTAACTATAACTACATGTGT+CGG | + | chr4.4:45017471-45017490 | None:intergenic | 25.0% |
! | TTAGTGTATTCTAAGTTGTA+AGG | - | chr4.4:45018648-45018667 | MS.gene08689:intron | 25.0% |
! | TTTATTATTGAATTTGTCGC+AGG | - | chr4.4:45019373-45019392 | MS.gene08689:CDS | 25.0% |
! | TTTCGTTATCCCTAAAATTT+AGG | - | chr4.4:45018949-45018968 | MS.gene08689:intron | 25.0% |
! | TTTCTGGATTTATTAATGCT+AGG | - | chr4.4:45019783-45019802 | MS.gene08689:intron | 25.0% |
!! | AAACACCATCATTTTATTCT+AGG | + | chr4.4:45018441-45018460 | None:intergenic | 25.0% |
!! | ATGTGTTCTTTTAATAGGTT+TGG | - | chr4.4:45017798-45017817 | MS.gene08689:CDS | 25.0% |
!! | ATTTTGCTTACATTATGAGA+CGG | - | chr4.4:45017060-45017079 | MS.gene08689:intron | 25.0% |
!! | CATAATTTTGCAGATTTTTC+TGG | - | chr4.4:45019112-45019131 | MS.gene08689:CDS | 25.0% |
!! | TGGATAGGTTAGAAATTTTA+AGG | - | chr4.4:45018191-45018210 | MS.gene08689:intron | 25.0% |
!! | TGTGTTCTTTTAATAGGTTT+GGG | - | chr4.4:45017799-45017818 | MS.gene08689:CDS | 25.0% |
!! | TTTAGTTGAAGTACTATCAT+AGG | - | chr4.4:45018547-45018566 | MS.gene08689:intron | 25.0% |
!!! | ATCTATATTTGTTGTGCAAT+TGG | + | chr4.4:45020438-45020457 | None:intergenic | 25.0% |
!!! | CATAGTCATATTGTTTTTGA+TGG | - | chr4.4:45018171-45018190 | MS.gene08689:intron | 25.0% |
!!! | GATCGTATTTAATATTTTGG+AGG | - | chr4.4:45019276-45019295 | MS.gene08689:intron | 25.0% |
!!! | TAATAGTTGTTTTACACAAC+TGG | - | chr4.4:45019070-45019089 | MS.gene08689:intron | 25.0% |
!!! | TATGTTTTAATGCTTGAAAC+AGG | - | chr4.4:45020285-45020304 | MS.gene08689:intron | 25.0% |
!!! | TCACGTTTTTAATTTACTTC+AGG | - | chr4.4:45020182-45020201 | MS.gene08689:intron | 25.0% |
!!! | TCATATTGTTTTTGATGGAT+AGG | - | chr4.4:45018176-45018195 | MS.gene08689:intron | 25.0% |
!!! | TTGTTTACTGTGTTTTTATC+TGG | - | chr4.4:45018281-45018300 | MS.gene08689:intron | 25.0% |
!!! | TTTGCTTATATTTTAGGGTT+TGG | + | chr4.4:45016974-45016993 | None:intergenic | 25.0% |
!!! | TTTTTATTGGTTGATCTTTC+TGG | - | chr4.4:45019767-45019786 | MS.gene08689:intron | 25.0% |
AAGATATAGCCAAGTACATA+CGG | - | chr4.4:45019031-45019050 | MS.gene08689:intron | 30.0% | |
AAGCTTATTTCAAGACTTGT+TGG | - | chr4.4:45018484-45018503 | MS.gene08689:intron | 30.0% | |
ACAGTTTAACAAGCATTTCA+AGG | + | chr4.4:45019689-45019708 | None:intergenic | 30.0% | |
ACCTATTAAAAGAACACATC+AGG | + | chr4.4:45017797-45017816 | None:intergenic | 30.0% | |
ACTCACCTAGAATAAAATGA+TGG | - | chr4.4:45018433-45018452 | MS.gene08689:intron | 30.0% | |
ATAGACTTCTTGCAACAAAA+AGG | + | chr4.4:45018827-45018846 | None:intergenic | 30.0% | |
ATCTTATATCTCGCAAAGTT+AGG | - | chr4.4:45017991-45018010 | MS.gene08689:intron | 30.0% | |
CAAACTATTGTCGTACTTTA+GGG | + | chr4.4:45017198-45017217 | None:intergenic | 30.0% | |
CTACAAACACGAAATCATAA+AGG | + | chr4.4:45017609-45017628 | None:intergenic | 30.0% | |
TAATATATCCCGTATGTACT+TGG | + | chr4.4:45019043-45019062 | None:intergenic | 30.0% | |
TAATCATTAAGCTTCCATCT+TGG | + | chr4.4:45020035-45020054 | None:intergenic | 30.0% | |
TCAAACTATTGTCGTACTTT+AGG | + | chr4.4:45017199-45017218 | None:intergenic | 30.0% | |
TCCTTACAAAACAGAAATCT+TGG | + | chr4.4:45018592-45018611 | None:intergenic | 30.0% | |
TCTGGTGCAAAGTAAAATAT+TGG | + | chr4.4:45019609-45019628 | None:intergenic | 30.0% | |
TCTTATATCTCGCAAAGTTA+GGG | - | chr4.4:45017992-45018011 | MS.gene08689:intron | 30.0% | |
TCTTGAAATAAGCTTCACTA+AGG | + | chr4.4:45018479-45018498 | None:intergenic | 30.0% | |
TGTACTTGGCTATATCTTTA+AGG | + | chr4.4:45019029-45019048 | None:intergenic | 30.0% | |
TTAATGTGTACAAGAGTTCA+TGG | - | chr4.4:45016860-45016879 | MS.gene08689:intron | 30.0% | |
TTGTCAAATTTAAGAAGCAG+TGG | - | chr4.4:45019248-45019267 | MS.gene08689:intron | 30.0% | |
! | ACCAAGATTTCTGTTTTGTA+AGG | - | chr4.4:45018588-45018607 | MS.gene08689:intron | 30.0% |
! | ATTTCGTGTTTGTAGTTTTC+AGG | - | chr4.4:45017614-45017633 | MS.gene08689:intron | 30.0% |
! | CTTTTCCTATAATAGACTTC+CGG | + | chr4.4:45018681-45018700 | None:intergenic | 30.0% |
!! | AATTTGTGCCTTGGTTTTTA+GGG | - | chr4.4:45019516-45019535 | MS.gene08689:intron | 30.0% |
!! | TAATTTGTGCCTTGGTTTTT+AGG | - | chr4.4:45019515-45019534 | MS.gene08689:intron | 30.0% |
!!! | TTTGGCATTGCCATTTTTAT+TGG | - | chr4.4:45019754-45019773 | MS.gene08689:intron | 30.0% |
AAGGTCATACATCAGTATTC+CGG | + | chr4.4:45019446-45019465 | None:intergenic | 35.0% | |
AATTACTCCACGCTCTATAA+GGG | + | chr4.4:45018784-45018803 | None:intergenic | 35.0% | |
AATTCATACCACTGAAACTG+AGG | + | chr4.4:45019473-45019492 | None:intergenic | 35.0% | |
AATTTAAGAAGCAGTGGTGA+AGG | - | chr4.4:45019254-45019273 | MS.gene08689:intron | 35.0% | |
ACACGGCTTTCAATATGAAT+TGG | + | chr4.4:45017435-45017454 | None:intergenic | 35.0% | |
ACTGCCACATATTCTATACT+AGG | + | chr4.4:45018729-45018748 | None:intergenic | 35.0% | |
AGATATAGCCAAGTACATAC+GGG | - | chr4.4:45019032-45019051 | MS.gene08689:intron | 35.0% | |
AGCAAACACAATAACGGTTT+GGG | - | chr4.4:45017258-45017277 | MS.gene08689:intron | 35.0% | |
ATGCCTTCAATTAGAAGAGT+TGG | - | chr4.4:45017362-45017381 | MS.gene08689:intron | 35.0% | |
ATTAAGGAATAGTTCATGGC+AGG | + | chr4.4:45019838-45019857 | None:intergenic | 35.0% | |
CAAATATAGGATCAATGACG+AGG | + | chr4.4:45019999-45020018 | None:intergenic | 35.0% | |
CAATGATGTACAGTGATACA+GGG | - | chr4.4:45017841-45017860 | MS.gene08689:intron | 35.0% | |
CACGGCTTTCAATATGAATT+GGG | + | chr4.4:45017434-45017453 | None:intergenic | 35.0% | |
CATTGATCCTATATTTGAGG+AGG | - | chr4.4:45020002-45020021 | MS.gene08689:intron | 35.0% | |
CCTCATAGCAAACACAATAA+CGG | - | chr4.4:45017252-45017271 | MS.gene08689:intron | 35.0% | |
CGGAAGTCTATTATAGGAAA+AGG | - | chr4.4:45018679-45018698 | MS.gene08689:intron | 35.0% | |
CGTCATTGATCCTATATTTG+AGG | - | chr4.4:45019999-45020018 | MS.gene08689:intron | 35.0% | |
CTGCCACATATTCTATACTA+GGG | + | chr4.4:45018728-45018747 | None:intergenic | 35.0% | |
GATAGAAGTCTAGTTGTTAG+TGG | - | chr4.4:45019177-45019196 | MS.gene08689:CDS | 35.0% | |
GATCCCTAGTATAGAATATG+TGG | - | chr4.4:45018722-45018741 | MS.gene08689:intron | 35.0% | |
GTATTCTAAGTTGTAAGGTG+AGG | - | chr4.4:45018653-45018672 | MS.gene08689:intron | 35.0% | |
GTTCAAAGAATCCTAACACT+AGG | - | chr4.4:45019000-45019019 | MS.gene08689:intron | 35.0% | |
TAAAAAAGATGGAGAACAGG+CGG | + | chr4.4:45020134-45020153 | None:intergenic | 35.0% | |
TAATGATTCCAGTCATGTCT+CGG | - | chr4.4:45019967-45019986 | MS.gene08689:intron | 35.0% | |
TAATTACTCCACGCTCTATA+AGG | + | chr4.4:45018785-45018804 | None:intergenic | 35.0% | |
TACTGTCTCACTTTACAGAT+TGG | - | chr4.4:45020206-45020225 | MS.gene08689:intron | 35.0% | |
TAGCAAACACAATAACGGTT+TGG | - | chr4.4:45017257-45017276 | MS.gene08689:intron | 35.0% | |
TAGGATTCTTTGAACATCAG+TGG | + | chr4.4:45018995-45019014 | None:intergenic | 35.0% | |
TCACACAGATACAATGACTT+TGG | + | chr4.4:45017692-45017711 | None:intergenic | 35.0% | |
TTAAGGAATAGTTCATGGCA+GGG | + | chr4.4:45019837-45019856 | None:intergenic | 35.0% | |
TTCGATGCTTCATAAAGCTT+TGG | - | chr4.4:45018036-45018055 | MS.gene08689:intron | 35.0% | |
TTGAACATCAGTGGTTGAAA+GGG | + | chr4.4:45018986-45019005 | None:intergenic | 35.0% | |
TTTGAACATCAGTGGTTGAA+AGG | + | chr4.4:45018987-45019006 | None:intergenic | 35.0% | |
TTTGCAACCTAAGCTACATA+CGG | - | chr4.4:45018406-45018425 | MS.gene08689:intron | 35.0% | |
! | AAGCAGTGGTTTCTTTTTAC+CGG | + | chr4.4:45016703-45016722 | None:intergenic | 35.0% |
! | ATTCTCTGTAATTTGTGCCT+TGG | - | chr4.4:45019507-45019526 | MS.gene08689:intron | 35.0% |
! | CAGTTTTCCTCCTCAAATAT+AGG | + | chr4.4:45020012-45020031 | None:intergenic | 35.0% |
! | CATGCTGATTGAAGTATGAA+GGG | + | chr4.4:45017742-45017761 | None:intergenic | 35.0% |
! | CTATACAACGTTTTCAACTC+CGG | - | chr4.4:45017884-45017903 | MS.gene08689:intron | 35.0% |
! | CTTTAAGGAATCCTAGTGTT+AGG | + | chr4.4:45019014-45019033 | None:intergenic | 35.0% |
! | GCCTGATGTGTTCTTTTAAT+AGG | - | chr4.4:45017793-45017812 | MS.gene08689:CDS | 35.0% |
! | TCATGCTGATTGAAGTATGA+AGG | + | chr4.4:45017743-45017762 | None:intergenic | 35.0% |
! | TGATGGTGTTTGAATCTAAC+TGG | - | chr4.4:45018450-45018469 | MS.gene08689:intron | 35.0% |
! | TTTGGAGGGTGCAATAATAT+TGG | - | chr4.4:45018054-45018073 | MS.gene08689:intron | 35.0% |
!! | AAAAAGCACCCTAAAAACCA+AGG | + | chr4.4:45019527-45019546 | None:intergenic | 35.0% |
!! | ATGCTTCATAAAGCTTTGGA+GGG | - | chr4.4:45018040-45018059 | MS.gene08689:intron | 35.0% |
!! | ATTTCAAGACTTGTTGGTCT+GGG | - | chr4.4:45018490-45018509 | MS.gene08689:intron | 35.0% |
!! | CAAAGCTTGCTAAGATTATG+AGG | - | chr4.4:45020525-45020544 | MS.gene08689:CDS | 35.0% |
!! | CGTTATTGTGTTTGCTATGA+GGG | + | chr4.4:45017254-45017273 | None:intergenic | 35.0% |
!! | TATTTCAAGACTTGTTGGTC+TGG | - | chr4.4:45018489-45018508 | MS.gene08689:intron | 35.0% |
AAAAACATCCACAGTGGTCT+TGG | + | chr4.4:45018089-45018108 | None:intergenic | 40.0% | |
AAAACATCCACAGTGGTCTT+GGG | + | chr4.4:45018088-45018107 | None:intergenic | 40.0% | |
AAAGAAACCACTGCTTCTCA+AGG | - | chr4.4:45016707-45016726 | MS.gene08689:CDS | 40.0% | |
AACAAGCATTTCAAGGCTAC+AGG | + | chr4.4:45019682-45019701 | None:intergenic | 40.0% | |
AGCAAGCTCTCATTGTCATT+TGG | - | chr4.4:45020460-45020479 | MS.gene08689:CDS | 40.0% | |
ATGCATAGAGTGTGTGATTC+TGG | + | chr4.4:45019627-45019646 | None:intergenic | 40.0% | |
ATGCTATCGTGCATAGAGTA+TGG | + | chr4.4:45019733-45019752 | None:intergenic | 40.0% | |
ATTACTCCACGCTCTATAAG+GGG | + | chr4.4:45018783-45018802 | None:intergenic | 40.0% | |
ATTATTCCCCTTATAGAGCG+TGG | - | chr4.4:45018774-45018793 | MS.gene08689:intron | 40.0% | |
CAATGCAAAAACATCCACAG+TGG | + | chr4.4:45018095-45018114 | None:intergenic | 40.0% | |
GCAAACACAATAACGGTTTG+GGG | - | chr4.4:45017259-45017278 | MS.gene08689:intron | 40.0% | |
GCAATGATGTACAGTGATAC+AGG | - | chr4.4:45017840-45017859 | MS.gene08689:intron | 40.0% | |
GCACCAACTCTTCTAATTGA+AGG | + | chr4.4:45017368-45017387 | None:intergenic | 40.0% | |
TAAGACATGCTGTGTTGTCA+TGG | - | chr4.4:45016936-45016955 | MS.gene08689:intron | 40.0% | |
TAATATACCTGTCCACGAAC+CGG | + | chr4.4:45017906-45017925 | None:intergenic | 40.0% | |
TAGCAACCGATATGACAACT+GGG | + | chr4.4:45019405-45019424 | None:intergenic | 40.0% | |
TCGGTATCAGATATTGGACA+CGG | + | chr4.4:45017452-45017471 | None:intergenic | 40.0% | |
TCTATGCACGATAGCATGTT+TGG | - | chr4.4:45019736-45019755 | MS.gene08689:intron | 40.0% | |
TGAACATCAGTGGTTGAAAG+GGG | + | chr4.4:45018985-45019004 | None:intergenic | 40.0% | |
TGATCTCCCAGTTGTCATAT+CGG | - | chr4.4:45019396-45019415 | MS.gene08689:CDS | 40.0% | |
TGCTTACATTATGAGACGGA+GGG | - | chr4.4:45017064-45017083 | MS.gene08689:intron | 40.0% | |
TGCTTCTCAAGGAAGAAGAT+TGG | - | chr4.4:45016718-45016737 | MS.gene08689:CDS | 40.0% | |
TTGCTTACATTATGAGACGG+AGG | - | chr4.4:45017063-45017082 | MS.gene08689:intron | 40.0% | |
! | ATTTGGTTTCCTTCATGCAG+GGG | - | chr4.4:45020477-45020496 | MS.gene08689:CDS | 40.0% |
! | CATGTGTCGGTATCAGATAT+TGG | + | chr4.4:45017458-45017477 | None:intergenic | 40.0% |
! | CATTTGGTTTCCTTCATGCA+GGG | - | chr4.4:45020476-45020495 | MS.gene08689:CDS | 40.0% |
! | GATGCTTCATAAAGCTTTGG+AGG | - | chr4.4:45018039-45018058 | MS.gene08689:intron | 40.0% |
! | TCATTTGGTTTCCTTCATGC+AGG | - | chr4.4:45020475-45020494 | MS.gene08689:CDS | 40.0% |
! | TGAAGTACTATCATAGGCAC+TGG | - | chr4.4:45018553-45018572 | MS.gene08689:intron | 40.0% |
! | TGGATTCAGCACAAGACTTT+TGG | + | chr4.4:45017285-45017304 | None:intergenic | 40.0% |
!! | AGACTTCTAGCTTCTGTGTA+AGG | - | chr4.4:45018851-45018870 | MS.gene08689:intron | 40.0% |
!! | CACTGTGGATGTTTTTGCAT+TGG | - | chr4.4:45018093-45018112 | MS.gene08689:intron | 40.0% |
!! | CCGTTATTGTGTTTGCTATG+AGG | + | chr4.4:45017255-45017274 | None:intergenic | 40.0% |
!! | GTGTTTGTAGTTTTCAGGAC+TGG | - | chr4.4:45017619-45017638 | MS.gene08689:intron | 40.0% |
!! | TGAAACAGGAGTATCTAGCA+TGG | - | chr4.4:45020299-45020318 | MS.gene08689:intron | 40.0% |
!! | TTTTTACCGGTTGTCAGAGA+CGG | + | chr4.4:45016690-45016709 | None:intergenic | 40.0% |
!!! | TGTTTGCTATGAGGGTTTTG+AGG | + | chr4.4:45017246-45017265 | None:intergenic | 40.0% |
ACCTCTTCGCATTAACGCAA+GGG | + | chr4.4:45018333-45018352 | None:intergenic | 45.0% | |
AGAATCTGCTTCTGATGCAC+AGG | - | chr4.4:45020559-45020578 | MS.gene08689:CDS | 45.0% | |
AGAGCGATGAAGCTTACAAG+CGG | + | chr4.4:45016781-45016800 | None:intergenic | 45.0% | |
AGGCGGACCTCATTAATCTT+TGG | + | chr4.4:45020117-45020136 | None:intergenic | 45.0% | |
AGTGCATCCGTATGTAGCTT+AGG | + | chr4.4:45018416-45018435 | None:intergenic | 45.0% | |
ATCACCCAACTGACAGTTAC+CGG | - | chr4.4:45020078-45020097 | MS.gene08689:intron | 45.0% | |
ATGCCTTCAACATGAAGCGT+TGG | + | chr4.4:45017410-45017429 | None:intergenic | 45.0% | |
ATTGCCTTCTTGCTCTCTCT+TGG | + | chr4.4:45017825-45017844 | None:intergenic | 45.0% | |
CACATGATATGACGCTGACA+TGG | + | chr4.4:45017534-45017553 | None:intergenic | 45.0% | |
CTAGCAACCGATATGACAAC+TGG | + | chr4.4:45019406-45019425 | None:intergenic | 45.0% | |
GCATCGAACTGTACTCTTTG+TGG | + | chr4.4:45018024-45018043 | None:intergenic | 45.0% | |
GCGGACCTCATTAATCTTTG+GGG | + | chr4.4:45020115-45020134 | None:intergenic | 45.0% | |
GGATCTGCTTATGCTGAGTT+TGG | - | chr4.4:45017661-45017680 | MS.gene08689:intron | 45.0% | |
GGCGGACCTCATTAATCTTT+GGG | + | chr4.4:45020116-45020135 | None:intergenic | 45.0% | |
GTCCACCCCAAAGATTAATG+AGG | - | chr4.4:45020107-45020126 | MS.gene08689:intron | 45.0% | |
TAAGTTGTAAGGTGAGGCAC+CGG | - | chr4.4:45018659-45018678 | MS.gene08689:intron | 45.0% | |
TACCTCTTCGCATTAACGCA+AGG | + | chr4.4:45018334-45018353 | None:intergenic | 45.0% | |
TCTTCTTCCTTGAGAAGCAG+TGG | + | chr4.4:45016717-45016736 | None:intergenic | 45.0% | |
TGGGTGATTTCATAGCGAGA+AGG | + | chr4.4:45020066-45020085 | None:intergenic | 45.0% | |
! | AAACATCCACAGTGGTCTTG+GGG | + | chr4.4:45018087-45018106 | None:intergenic | 45.0% |
! | GACCTCATTAATCTTTGGGG+TGG | + | chr4.4:45020112-45020131 | None:intergenic | 45.0% |
! | GGAGGGAGTATAGATGATAG+TGG | - | chr4.4:45017081-45017100 | MS.gene08689:intron | 45.0% |
! | TGCCTTCAACATGAAGCGTT+GGG | + | chr4.4:45017409-45017428 | None:intergenic | 45.0% |
!! | AGGCACCGGAAGTCTATTAT+AGG | - | chr4.4:45018673-45018692 | MS.gene08689:intron | 45.0% |
!! | GGATGTTTTTGCATTGGTGC+TGG | - | chr4.4:45018099-45018118 | MS.gene08689:intron | 45.0% |
!! | ATAAAAATATTTAAAAAAGA+TGG | + | chr4.4:45020145-45020164 | None:intergenic | 5.0% |
AACTGACAGTTACCGGCGAA+TGG | - | chr4.4:45020085-45020104 | MS.gene08689:intron | 50.0% | |
ACCCCAACGCTTCATGTTGA+AGG | - | chr4.4:45017404-45017423 | MS.gene08689:intron | 50.0% | |
AGCAGAATAGCATTGCGCTG+CGG | + | chr4.4:45017312-45017331 | None:intergenic | 50.0% | |
ATTCGCCGGTAACTGTCAGT+TGG | + | chr4.4:45020086-45020105 | None:intergenic | 50.0% | |
GAGCGATGAAGCTTACAAGC+GGG | + | chr4.4:45016780-45016799 | None:intergenic | 50.0% | |
GAGGAGGAAAACTGCCAAGA+TGG | - | chr4.4:45020018-45020037 | MS.gene08689:intron | 50.0% | |
GGTTCTTACCGAGACATGAC+TGG | + | chr4.4:45019978-45019997 | None:intergenic | 50.0% | |
GTCTACACTGGTGGAAACCA+CGG | + | chr4.4:45016758-45016777 | None:intergenic | 50.0% | |
TACTCACCGTCTCTGACAAC+CGG | - | chr4.4:45016681-45016700 | MS.gene08689:CDS | 50.0% | |
TCCCTTGCGTTAATGCGAAG+AGG | - | chr4.4:45018329-45018348 | MS.gene08689:intron | 50.0% | |
TTCGCCGGTAACTGTCAGTT+GGG | + | chr4.4:45020085-45020104 | None:intergenic | 50.0% | |
TTCTTTCCCCAAGACCACTG+TGG | - | chr4.4:45018078-45018097 | MS.gene08689:intron | 50.0% | |
TTGGTCTGGGTACAGCTTGT+AGG | - | chr4.4:45018503-45018522 | MS.gene08689:intron | 50.0% | |
!! | ACGTTTTCAACTCCGGTTCG+TGG | - | chr4.4:45017891-45017910 | MS.gene08689:intron | 50.0% |
!! | ATCGGTTGCTAGTCTTGCCT+TGG | - | chr4.4:45019414-45019433 | MS.gene08689:intron | 50.0% |
!! | GCATTGGTGCTGGAATCTAG+TGG | - | chr4.4:45018109-45018128 | MS.gene08689:intron | 50.0% |
!! | GCCTTCAACATGAAGCGTTG+GGG | + | chr4.4:45017408-45017427 | None:intergenic | 50.0% |
AGAGACGGTGAGTATGTCGC+CGG | + | chr4.4:45016675-45016694 | None:intergenic | 55.0% | |
AGTCTTGCCTTGGCAGATGC+CGG | - | chr4.4:45019424-45019443 | MS.gene08689:intron | 55.0% | |
CAGTATTCCGGCATCTGCCA+AGG | + | chr4.4:45019434-45019453 | None:intergenic | 55.0% | |
CCACTGAAACTGAGGCGACA+AGG | + | chr4.4:45019465-45019484 | None:intergenic | 55.0% | |
CCTTGTCGCCTCAGTTTCAG+TGG | - | chr4.4:45019462-45019481 | MS.gene08689:intron | 55.0% | |
CGGCAAAAGTGGAACGACTC+CGG | - | chr4.4:45016653-45016672 | MS.gene08689:CDS | 55.0% | |
GCTTACAAGCGGGTCTACAC+TGG | + | chr4.4:45016770-45016789 | None:intergenic | 55.0% | |
TACAAGCGGGTCTACACTGG+TGG | + | chr4.4:45016767-45016786 | None:intergenic | 55.0% | |
TGGGCCAAGAGAGAGCAAGA+AGG | - | chr4.4:45017818-45017837 | MS.gene08689:CDS | 55.0% | |
! | GGTGCTGTGAATGCTGCATC+AGG | - | chr4.4:45017640-45017659 | MS.gene08689:intron | 55.0% |
! | TTCAACTCCGGTTCGTGGAC+AGG | - | chr4.4:45017896-45017915 | MS.gene08689:intron | 55.0% |
!! | CGGAGTCGTTCCACTTTTGC+CGG | + | chr4.4:45016655-45016674 | None:intergenic | 55.0% |
CAGCTGCATCCCCTGCATGA+AGG | + | chr4.4:45020489-45020508 | None:intergenic | 60.0% | |
CTGGTGGAAACCACGGCCAT+CGG | + | chr4.4:45016751-45016770 | None:intergenic | 60.0% | |
GAAGATTGGACCCGACCCGA+TGG | - | chr4.4:45016732-45016751 | MS.gene08689:intron | 60.0% | |
TAGCATTGCGCTGCGGCGAT+TGG | + | chr4.4:45017305-45017324 | None:intergenic | 60.0% | |
TGGTGGAAACCACGGCCATC+GGG | + | chr4.4:45016750-45016769 | None:intergenic | 60.0% | |
!! | CTTTGGGGTGGACCATTCGC+CGG | + | chr4.4:45020100-45020119 | None:intergenic | 60.0% |
GAAACCACGGCCATCGGGTC+GGG | + | chr4.4:45016745-45016764 | None:intergenic | 65.0% | |
GCAGGGGATGCAGCTGTGCT+TGG | - | chr4.4:45020493-45020512 | MS.gene08689:CDS | 65.0% | |
GGAAACCACGGCCATCGGGT+CGG | + | chr4.4:45016746-45016765 | None:intergenic | 65.0% | |
TGGACCCGACCCGATGGCCG+TGG | - | chr4.4:45016738-45016757 | MS.gene08689:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 45016648 | 45020595 | 45016648 | ID=MS.gene08689 |
chr4.4 | mRNA | 45016648 | 45020595 | 45016648 | ID=MS.gene08689.t1;Parent=MS.gene08689 |
chr4.4 | exon | 45020460 | 45020595 | 45020460 | ID=MS.gene08689.t1.exon1;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45020460 | 45020595 | 45020460 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
chr4.4 | exon | 45019536 | 45019614 | 45019536 | ID=MS.gene08689.t1.exon2;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45019536 | 45019614 | 45019536 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
chr4.4 | exon | 45019326 | 45019428 | 45019326 | ID=MS.gene08689.t1.exon3;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45019326 | 45019428 | 45019326 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
chr4.4 | exon | 45019110 | 45019230 | 45019110 | ID=MS.gene08689.t1.exon4;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45019110 | 45019230 | 45019110 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
chr4.4 | exon | 45017760 | 45017848 | 45017760 | ID=MS.gene08689.t1.exon5;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45017760 | 45017848 | 45017760 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
chr4.4 | exon | 45017115 | 45017264 | 45017115 | ID=MS.gene08689.t1.exon6;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45017115 | 45017264 | 45017115 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
chr4.4 | exon | 45016648 | 45016746 | 45016648 | ID=MS.gene08689.t1.exon7;Parent=MS.gene08689.t1 |
chr4.4 | CDS | 45016648 | 45016746 | 45016648 | ID=cds.MS.gene08689.t1;Parent=MS.gene08689.t1 |
Gene Sequence |
Protein sequence |