AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08822

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08822.t1 MTR_8g083100 98.563 487 7 0 1 487 1 487 0.0 996
MS.gene08822.t1 MTR_2g100680 74.831 445 109 2 1 444 12 454 0.0 680
MS.gene08822.t1 MTR_6g043060 85.616 292 42 0 1 292 1 292 0.0 516
MS.gene08822.t1 MTR_6g043060 75.556 45 11 0 412 456 284 328 1.32e-14 75.1
MS.gene08822.t1 MTR_2g100670 68.792 298 73 3 1 297 14 292 5.30e-138 400
MS.gene08822.t1 MTR_2g100670 68.792 298 73 3 1 297 122 400 7.18e-136 399
MS.gene08822.t1 MTR_6g044340 62.069 232 46 2 68 299 8 197 2.96e-88 271
MS.gene08822.t1 MTR_6g044340 75.000 72 18 0 386 457 192 263 1.88e-27 111
MS.gene08822.t1 MTR_5g029680 50.935 214 91 4 19 218 29 242 1.02e-64 218
MS.gene08822.t1 MTR_8g087540 51.905 210 90 4 13 217 4 207 3.75e-63 211
MS.gene08822.t1 MTR_6g044430 62.245 196 24 3 100 295 14 159 4.36e-63 205
MS.gene08822.t1 MTR_6g044430 55.372 121 44 3 346 457 110 229 2.86e-26 107
MS.gene08822.t1 MTR_4g077970 46.860 207 98 3 22 216 12 218 7.36e-56 194
MS.gene08822.t1 MTR_6g044440 75.397 126 18 1 174 299 1 113 1.69e-53 178
MS.gene08822.t1 MTR_6g044440 75.000 72 18 0 386 457 108 179 2.42e-28 111
MS.gene08822.t1 MTR_1g102860 46.117 206 99 5 19 215 37 239 4.06e-51 177
MS.gene08822.t1 MTR_7g095680 46.411 209 102 4 19 217 46 254 4.62e-51 177
MS.gene08822.t1 MTR_6g055650 80.000 105 17 1 220 324 49 149 7.11e-49 165
MS.gene08822.t1 MTR_3g104550 44.390 205 104 5 19 216 43 244 1.05e-48 172
MS.gene08822.t1 MTR_1g071360 44.633 177 90 2 20 195 30 199 1.46e-46 165
MS.gene08822.t1 MTR_6g055660 84.270 89 14 0 264 352 1 89 1.85e-46 156
MS.gene08822.t1 MTR_1g061170 34.528 307 190 7 22 323 49 349 2.16e-46 167
MS.gene08822.t1 MTR_1g071360 44.633 177 90 2 20 195 27 196 2.78e-46 165
MS.gene08822.t1 MTR_8g105780 48.969 194 86 6 21 201 21 214 3.25e-44 159
MS.gene08822.t1 MTR_3g101870 72.340 94 26 0 20 113 22 115 2.05e-43 157
MS.gene08822.t1 MTR_6g044350 61.538 143 24 3 174 310 1 118 2.26e-42 147
MS.gene08822.t1 MTR_6g044350 78.571 42 9 0 402 443 105 146 1.17e-15 74.3
MS.gene08822.t1 MTR_2g017890 62.037 108 41 0 12 119 5 112 4.06e-42 154
MS.gene08822.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 7.07e-42 153
MS.gene08822.t1 MTR_5g017470 61.538 104 40 0 19 122 6 109 3.27e-41 149
MS.gene08822.t1 MTR_5g089170 69.149 94 29 0 20 113 23 116 5.32e-41 147
MS.gene08822.t1 MTR_6g086805 39.286 224 103 4 21 230 10 214 1.25e-40 149
MS.gene08822.t1 MTR_0020s0020 63.830 94 34 0 20 113 31 124 5.61e-38 142
MS.gene08822.t1 MTR_1g100777 60.417 96 38 0 20 115 16 111 3.58e-37 139
MS.gene08822.t1 MTR_7g091370 51.327 113 55 0 1 113 1 113 6.61e-36 133
MS.gene08822.t1 MTR_4g088900 57.143 98 38 1 20 113 31 128 3.18e-33 125
MS.gene08822.t1 MTR_6g044500 68.421 95 11 1 205 299 1 76 7.94e-33 120
MS.gene08822.t1 MTR_6g044510 82.759 58 10 0 400 457 31 88 3.75e-25 99.4
MS.gene08822.t1 MTR_6g044510 68.085 47 14 1 264 310 1 46 4.43e-11 59.7
MS.gene08822.t1 MTR_5g047190 50.515 97 41 2 30 119 1 97 2.18e-24 97.4
MS.gene08822.t1 MTR_4g045757 67.241 58 19 0 22 79 14 71 3.88e-20 85.1
MS.gene08822.t1 MTR_1g061170 27.239 268 176 9 61 323 1 254 2.59e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08822.t1 AT4G13980 51.107 497 202 10 1 487 1 466 5.69e-145 424
MS.gene08822.t1 AT1G32330 47.660 235 104 5 1 216 16 250 7.53e-61 207
MS.gene08822.t1 AT1G32330 47.660 235 104 5 1 216 16 250 8.32e-61 207
MS.gene08822.t1 AT4G17750 46.352 233 104 4 5 216 35 267 5.16e-60 205
MS.gene08822.t1 AT5G16820 50.000 210 90 5 22 217 27 235 2.65e-58 200
MS.gene08822.t1 AT5G16820 50.000 210 90 5 22 217 27 235 2.65e-58 200
MS.gene08822.t1 AT3G02990 46.119 219 105 4 22 228 23 240 1.95e-57 197
MS.gene08822.t1 AT4G18880 51.643 213 93 3 14 220 7 215 1.61e-55 191
MS.gene08822.t1 AT3G22830 43.662 213 106 4 19 217 58 270 3.38e-50 176
MS.gene08822.t1 AT2G26150 43.243 222 118 4 19 232 41 262 6.62e-50 174
MS.gene08822.t1 AT2G26150 43.243 222 118 4 19 232 41 262 6.62e-50 174
MS.gene08822.t1 AT5G45710 46.296 216 101 4 14 224 6 211 1.75e-49 173
MS.gene08822.t1 AT5G45710 46.296 216 101 4 14 224 6 211 1.75e-49 173
MS.gene08822.t1 AT3G51910 43.478 207 101 4 14 215 21 216 9.69e-48 166
MS.gene08822.t1 AT5G43840 45.745 188 90 3 20 205 17 194 9.88e-46 161
MS.gene08822.t1 AT5G03720 45.556 180 95 2 22 198 55 234 4.95e-45 163
MS.gene08822.t1 AT5G03720 45.556 180 95 2 22 198 55 234 4.95e-45 163
MS.gene08822.t1 AT1G46264 60.504 119 37 1 14 122 26 144 5.69e-44 158
MS.gene08822.t1 AT1G67970 45.550 191 91 5 21 201 18 205 1.67e-43 158
MS.gene08822.t1 AT3G24520 44.809 183 78 4 21 202 16 176 6.60e-43 155
MS.gene08822.t1 AT3G63350 37.447 235 132 3 5 227 3 234 1.54e-42 152
MS.gene08822.t1 AT5G54070 42.029 207 109 3 18 218 67 268 2.17e-42 154
MS.gene08822.t1 AT5G62020 52.101 119 56 1 1 118 1 119 5.89e-38 140
MS.gene08822.t1 AT4G11660 62.766 94 35 0 20 113 57 150 2.84e-37 141
MS.gene08822.t1 AT4G36990 60.417 96 38 0 20 115 12 107 5.34e-37 138
MS.gene08822.t1 AT2G41690 53.846 117 54 0 20 136 38 154 1.10e-36 135
MS.gene08822.t1 AT4G18870 47.368 95 49 1 15 109 6 99 3.86e-21 94.0
MS.gene08822.t1 AT4G18870 45.455 88 48 0 22 109 146 233 6.11e-21 93.6
MS.gene08822.t1 AT1G77570 42.222 90 49 2 23 109 27 116 7.37e-18 80.9
MS.gene08822.t1 AT2G26150 35.664 143 84 4 82 216 49 191 1.71e-16 80.5
MS.gene08822.t1 AT2G26150 35.664 143 84 4 82 216 49 191 1.71e-16 80.5

Find 131 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCAATGCTGCCCTTTC+TGG -0.033953 4.2:+13316410 None:intergenic
CAATTTCCTGACAGTTTATT+TGG 0.134687 4.2:+13315670 None:intergenic
ATCCATGTTCTTGATGTTAA+TGG 0.154738 4.2:+13315365 None:intergenic
TCTGCAAGGTCTAGTGTTTC+AGG 0.179480 4.2:+13315885 None:intergenic
AGCAATTTCAGACTGGAATT+TGG 0.185327 4.2:-13316089 MS.gene08822:CDS
CCTTCTTCTTGCTCACTATT+TGG 0.197563 4.2:+13315408 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 4.2:-13316243 MS.gene08822:CDS
CAAATAAACTGTCAGGAAAT+TGG 0.249049 4.2:-13315669 MS.gene08822:CDS
GGCTCCAGAGAATGAAGATT+TGG 0.274713 4.2:+13315795 None:intergenic
ACACTAGACCTTGCAGATAC+TGG 0.281618 4.2:-13315879 MS.gene08822:CDS
CTGTCAGGAAATTGGCAATT+TGG 0.285988 4.2:-13315661 MS.gene08822:CDS
GAAATTGTTGTGCTTGAAAT+AGG 0.289577 4.2:+13318279 None:intergenic
AATTTCCTGACAGTTTATTT+GGG 0.297215 4.2:+13315671 None:intergenic
ATAACAAAAGCTTCATTGTT+TGG 0.304742 4.2:-13318336 MS.gene08822:CDS
ACGGGGTGAATGATGTGTTT+TGG 0.315138 4.2:-13315500 MS.gene08822:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 4.2:-13318366 MS.gene08822:CDS
GCAATTTCAGACTGGAATTT+GGG 0.327997 4.2:-13316088 MS.gene08822:CDS
GATGGTAAAGAATCTGAAAT+TGG 0.330710 4.2:-13315618 MS.gene08822:CDS
CTTGTACATTGGAATTCAAT+AGG 0.346549 4.2:-13315716 MS.gene08822:CDS
AGAAGAACACGGGAGAATTC+AGG 0.363985 4.2:+13318307 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.364324 4.2:-13316192 MS.gene08822:CDS
AACTCTGGCATCTTGTACAT+TGG 0.365517 4.2:-13315727 MS.gene08822:CDS
CTATCACCTTCTTCAGTACT+TGG 0.371141 4.2:+13315774 None:intergenic
GAAGAAGGGCGGTCAGTTCA+TGG 0.385884 4.2:-13315393 MS.gene08822:CDS
ATTAGCCACATTTCGGTTTG+TGG 0.388053 4.2:+13315590 None:intergenic
TCAGATATGAACTTGATATC+AGG 0.394555 4.2:-13316008 MS.gene08822:CDS
ATTTGGAATTGCTCGATAGT+TGG 0.404937 4.2:+13315425 None:intergenic
TAGCCTCATTAGCCACATTT+CGG 0.405235 4.2:+13315583 None:intergenic
TCAAAGCTGCTGCTCGGCAC+GGG 0.408584 4.2:-13315518 MS.gene08822:CDS
ACAGGAATGCAGACAAGAAC+TGG 0.408767 4.2:-13315921 MS.gene08822:CDS
GCTCCAGAGAATGAAGATTT+GGG 0.410466 4.2:+13315796 None:intergenic
CACTAGACCTTGCAGATACT+GGG 0.411215 4.2:-13315878 MS.gene08822:CDS
GCCGCTGCCGCCGGAGGAAG+CGG 0.414745 4.2:-13318442 MS.gene08822:CDS
CGGAGGAAGCGGAGGAGGTC+CGG 0.415280 4.2:-13318431 MS.gene08822:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 4.2:+13316122 None:intergenic
CAGAGTTAAATTTAGTTGGC+AGG 0.423956 4.2:+13315743 None:intergenic
AGCTTAAGAGCTTGGATTGA+AGG 0.426622 4.2:+13316354 None:intergenic
GTGCCCAAATCTTCATTCTC+TGG 0.429020 4.2:-13315799 MS.gene08822:CDS
ACGTTACCTGAAGCCTCCTT+TGG 0.431681 4.2:+13315546 None:intergenic
ATGCCAGAGTTAAATTTAGT+TGG 0.435087 4.2:+13315739 None:intergenic
TCCGCTTCCTCCGGCGGCAG+CGG 0.440478 4.2:+13318441 None:intergenic
ATAACTGTAGCTTAAGAGCT+TGG 0.443695 4.2:+13316346 None:intergenic
GCCGAGCAGCAGCTTTGACT+TGG 0.452625 4.2:+13315523 None:intergenic
TAAGAAAAGGCGATTGCCTC+AGG 0.456333 4.2:-13316159 MS.gene08822:CDS
TGGCAGCTTATAATAAGAAA+AGG 0.461564 4.2:-13316172 MS.gene08822:CDS
TTACCTGAAGCCTCCTTTGG+TGG 0.465202 4.2:+13315549 None:intergenic
GCTCCACCAAAGGAGGCTTC+AGG 0.466668 4.2:-13315552 MS.gene08822:CDS
GCCGCCGGAGGAAGCGGAGG+AGG 0.467841 4.2:-13318436 MS.gene08822:CDS
AAAAGCAGATCCTGAGCGTT+GGG 0.472666 4.2:-13316540 MS.gene08822:CDS
CCCAAGACAGCATGCTCAAA+GGG 0.473933 4.2:+13315335 None:intergenic
TCCTCATCAGCCGCTGCCGC+CGG 0.477669 4.2:-13318451 MS.gene08822:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.478636 4.2:-13316198 MS.gene08822:CDS
TCACAGTCATAGTCATCCTC+CGG 0.482739 4.2:-13316447 MS.gene08822:CDS
CCAAATAGTGAGCAAGAAGA+AGG 0.485282 4.2:-13315408 MS.gene08822:CDS
GGATGACTATGACTGTGAAT+AGG 0.487235 4.2:+13316452 None:intergenic
GTCGCCCCAAATAAACTGTC+AGG 0.490553 4.2:-13315676 MS.gene08822:CDS
AATTCCAGTCTGAAATTGCT+AGG 0.494876 4.2:+13316092 None:intergenic
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 4.2:-13316414 MS.gene08822:CDS
TGTTGTGCTTGAAATAGGTT+GGG 0.496826 4.2:+13318284 None:intergenic
ACAGTTTATTTGGGGCGACC+TGG 0.496979 4.2:+13315680 None:intergenic
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 4.2:-13316321 MS.gene08822:CDS
CTGCCAACTAAATTTAACTC+TGG 0.500806 4.2:-13315742 MS.gene08822:CDS
AAACCGAAATGTGGCTAATG+AGG 0.502956 4.2:-13315586 MS.gene08822:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 4.2:+13318255 None:intergenic
GTCAAAGCTGCTGCTCGGCA+CGG 0.509514 4.2:-13315519 MS.gene08822:CDS
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 4.2:-13316252 MS.gene08822:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 4.2:-13316123 MS.gene08822:CDS
TCCGGCGGCAGCGGCTGATG+AGG 0.511352 4.2:+13318450 None:intergenic
TTGTTGTGCTTGAAATAGGT+TGG 0.514168 4.2:+13318283 None:intergenic
CTGCAAGGTCTAGTGTTTCA+GGG 0.517628 4.2:+13315886 None:intergenic
ATAGGAATTCATACTCGGCC+AGG 0.518045 4.2:-13315698 MS.gene08822:CDS
TCTTCATTGTCTGAACAGCC+TGG 0.518791 4.2:+13315456 None:intergenic
TTGGCAAACTCCCAACGCTC+AGG 0.519786 4.2:+13316530 None:intergenic
AACAGCCTGGTCTTTCAGTA+AGG 0.527046 4.2:+13315469 None:intergenic
AGTTTATTTGAGATATCTTG+AGG 0.532987 4.2:+13316056 None:intergenic
GCTTAAGAGCTTGGATTGAA+GGG 0.534276 4.2:+13316355 None:intergenic
ATTATAAGCTGCCAAATCCA+TGG 0.537709 4.2:+13316181 None:intergenic
GTTTATTTGAGATATCTTGA+GGG 0.542382 4.2:+13316057 None:intergenic
TCATACGTCTTCTGAAGAAA+CGG 0.543831 4.2:+13318406 None:intergenic
CTCCATTAACATCAAGAACA+TGG 0.545248 4.2:-13315367 MS.gene08822:CDS
GAAAAGCAGATCCTGAGCGT+TGG 0.545857 4.2:-13316541 MS.gene08822:CDS
CTGTCTGAAGGAGAACTGAC+AGG 0.546477 4.2:-13315939 MS.gene08822:CDS
CAATCCTAGCAATTTCAGAC+TGG 0.548773 4.2:-13316096 MS.gene08822:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 4.2:-13316291 MS.gene08822:CDS
ATTGTCAACCAAGCTACCTT+CGG 0.550180 4.2:+13316115 None:intergenic
CAAAGCTGCTGCTCGGCACG+GGG 0.552279 4.2:-13315517 MS.gene08822:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 4.2:-13316446 MS.gene08822:CDS
CGGACCTCCTCCGCTTCCTC+CGG 0.560425 4.2:+13318432 None:intergenic
GAGTCAAGAGTTAACGCTGA+TGG 0.561131 4.2:-13315636 MS.gene08822:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 4.2:-13316423 MS.gene08822:CDS
CTGGAGCCAAGTACTGAAGA+AGG 0.565718 4.2:-13315780 MS.gene08822:CDS
TTCTGAAGAATATACACCGC+AGG 0.566868 4.2:-13316478 MS.gene08822:CDS
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 4.2:-13316424 MS.gene08822:CDS
GCTGCCGCCGGAGGAAGCGG+AGG 0.569858 4.2:-13318439 MS.gene08822:CDS
TCATCAGCCGCTGCCGCCGG+AGG 0.573945 4.2:-13318448 MS.gene08822:CDS
AAGTTCATATCTGAGACAGC+TGG 0.576214 4.2:+13316017 None:intergenic
ACCTCCTCCGCTTCCTCCGG+CGG 0.590329 4.2:+13318435 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 4.2:-13316283 MS.gene08822:CDS
CAATCTAGCTCCACCAAAGG+AGG 0.593167 4.2:-13315559 MS.gene08822:CDS
CACGTGCAGCCTGTTGCCGA+AGG 0.594030 4.2:-13316131 MS.gene08822:CDS
GCAGCGGCTGATGAGGATTG+TGG 0.595315 4.2:+13318457 None:intergenic
GTCTTCTGAAGAAACGGTGC+CGG 0.596431 4.2:+13318412 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 4.2:+13318245 None:intergenic
TCCAAGTCAAAGCTGCTGCT+CGG 0.603523 4.2:-13315524 MS.gene08822:CDS
CAAATAGTGAGCAAGAAGAA+GGG 0.604496 4.2:-13315407 MS.gene08822:CDS
ATTTCCTGACAGTTTATTTG+GGG 0.606554 4.2:+13315672 None:intergenic
AATAGGTTGGGAGAAGAACA+CGG 0.613461 4.2:+13318296 None:intergenic
TCTGGATCTACAGCAGAACC+CGG 0.614712 4.2:+13316428 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.614963 4.2:+13318369 None:intergenic
AGTTTCCACAAACCGAAATG+TGG 0.624523 4.2:-13315595 MS.gene08822:CDS
GTGTTTCAGGGGTAAAAGCA+AGG 0.625370 4.2:+13315898 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 4.2:+13318366 None:intergenic
TTGATATCAGGTAGCACACA+GGG 0.633161 4.2:-13315996 MS.gene08822:CDS
ACAGGGTTCAAACGAAGATG+AGG 0.634687 4.2:-13315979 MS.gene08822:CDS
TGCAAGGTCTAGTGTTTCAG+GGG 0.637403 4.2:+13315887 None:intergenic
ATTCAATAGGAATTCATACT+CGG 0.642142 4.2:-13315703 MS.gene08822:CDS
GACTGTGAATAGGTTTCCTG+CGG 0.644543 4.2:+13316462 None:intergenic
AGAACACGGGAGAATTCAGG+AGG 0.649555 4.2:+13318310 None:intergenic
ATAGGTTGGGAGAAGAACAC+GGG 0.651753 4.2:+13318297 None:intergenic
AATTTCCTTACTGAAAGACC+AGG 0.654469 4.2:-13315474 MS.gene08822:CDS
AAGATGCCCCAGTATCTGCA+AGG 0.666464 4.2:+13315871 None:intergenic
AGGCTGTTCAGACAATGAAG+AGG 0.672815 4.2:-13315454 MS.gene08822:CDS
TATCAATCTAGCTCCACCAA+AGG 0.674289 4.2:-13315562 MS.gene08822:CDS
TCTTCAGAAGACGTATGACA+TGG 0.676071 4.2:-13318401 MS.gene08822:CDS
CTTGATATCAGGTAGCACAC+AGG 0.676389 4.2:-13315997 MS.gene08822:CDS
GGCTGCACGTGATCAACCTG+AGG 0.691898 4.2:+13316143 None:intergenic
TCAGAAGACGTATGACATGG+TGG 0.698200 4.2:-13318398 MS.gene08822:CDS
ACTAGACCTTGCAGATACTG+GGG 0.701020 4.2:-13315877 MS.gene08822:CDS
ATAGTGAGCAAGAAGAAGGG+CGG 0.709670 4.2:-13315404 MS.gene08822:CDS
GGATCTACAGCAGAACCCGG+AGG 0.744225 4.2:+13316431 None:intergenic
GAACACGGGAGAATTCAGGA+GGG 0.754078 4.2:+13318311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATAAAAATTTACAATAT+AGG + chr4.2:13316992-13317011 None:intergenic 10.0%
!!! ATATTTTTGTAAAGATTTAA+TGG - chr4.2:13317141-13317160 MS.gene08822:intron 10.0%
!!! ATTTATGTTTTAATTTGTTA+TGG - chr4.2:13317223-13317242 MS.gene08822:intron 10.0%
!! ATAAATATGATATGATGATA+TGG - chr4.2:13316262-13316281 MS.gene08822:CDS 15.0%
!! ATATCATATTTATATAGTTC+AGG + chr4.2:13316255-13316274 None:intergenic 15.0%
!! ATTATGAACAAATTTAGATT+TGG - chr4.2:13315797-13315816 MS.gene08822:CDS 15.0%
!!! ATCTTTTATAAATTCTTCAT+TGG + chr4.2:13317311-13317330 None:intergenic 15.0%
!! AATGGGAAAATTTAACATTT+AGG + chr4.2:13316839-13316858 None:intergenic 20.0%
!! AGGATTAAACAATAAAAATC+TGG + chr4.2:13316878-13316897 None:intergenic 20.0%
!! ATGGGAAAATTTAACATTTA+GGG + chr4.2:13316838-13316857 None:intergenic 20.0%
!! ATGTGAAAGATTTGAAAATA+AGG + chr4.2:13316790-13316809 None:intergenic 20.0%
!! GGATTAAACAATAAAAATCT+GGG + chr4.2:13316877-13316896 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAGTATA+TGG - chr4.2:13316338-13316357 MS.gene08822:CDS 20.0%
!!! AGCTAACTTTTTTTTTTTCA+TGG + chr4.2:13316737-13316756 None:intergenic 20.0%
!!! ATTGACACATTTTTGTTTTT+CGG + chr4.2:13316321-13316340 None:intergenic 20.0%
!!! ATTTATATGTGCTTTTTATC+AGG - chr4.2:13317249-13317268 MS.gene08822:intron 20.0%
!!! TTATTTTCAAATCTTTCACA+TGG - chr4.2:13316789-13316808 MS.gene08822:intron 20.0%
!!! TTTATATGTGCTTTTTATCA+GGG - chr4.2:13317250-13317269 MS.gene08822:intron 20.0%
! AAAAATCTGCTTAGTAAGAT+AGG - chr4.2:13315773-13315792 MS.gene08822:CDS 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr4.2:13317052-13317071 MS.gene08822:intron 25.0%
! AATTTCCTGACAGTTTATTT+GGG + chr4.2:13318151-13318170 None:intergenic 25.0%
! ATAACAAAAGCTTCATTGTT+TGG - chr4.2:13315483-13315502 MS.gene08822:CDS 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr4.2:13316211-13316230 None:intergenic 25.0%
! ATGGCAATGATTAAAAACTA+AGG - chr4.2:13317071-13317090 MS.gene08822:intron 25.0%
! ATTACACACATAAAAACTTC+AGG + chr4.2:13317116-13317135 None:intergenic 25.0%
! ATTCAATAGGAATTCATACT+CGG - chr4.2:13318116-13318135 MS.gene08822:intron 25.0%
! TGGGCAATTATTGAATTTAA+AGG - chr4.2:13316649-13316668 MS.gene08822:intron 25.0%
! TTGATATCTAACTCTTAGAT+AGG - chr4.2:13317023-13317042 MS.gene08822:intron 25.0%
!! AGTTTATTTGAGATATCTTG+AGG + chr4.2:13317766-13317785 None:intergenic 25.0%
!! GTTTATTTGAGATATCTTGA+GGG + chr4.2:13317765-13317784 None:intergenic 25.0%
!! TATCATGTTTCTATAGTGTA+GGG - chr4.2:13316444-13316463 MS.gene08822:CDS 25.0%
!! TTATCATGTTTCTATAGTGT+AGG - chr4.2:13316443-13316462 MS.gene08822:CDS 25.0%
!!! TTGACACATTTTTGTTTTTC+GGG + chr4.2:13316320-13316339 None:intergenic 25.0%
AAAAAAAATTCTGCAGCATC+TGG - chr4.2:13316151-13316170 MS.gene08822:CDS 30.0%
AATCATTCAAAGAAGTTTGC+AGG - chr4.2:13317166-13317185 MS.gene08822:intron 30.0%
AATTGGAGTTGCTAAATGTT+GGG - chr4.2:13315834-13315853 MS.gene08822:CDS 30.0%
ATCCATGTTCTTGATGTTAA+TGG + chr4.2:13318457-13318476 None:intergenic 30.0%
ATGCCAGAGTTAAATTTAGT+TGG + chr4.2:13318083-13318102 None:intergenic 30.0%
ATTCAATAATTGCCCATGTA+TGG + chr4.2:13316645-13316664 None:intergenic 30.0%
ATTTCCTGACAGTTTATTTG+GGG + chr4.2:13318150-13318169 None:intergenic 30.0%
CAAATAAACTGTCAGGAAAT+TGG - chr4.2:13318150-13318169 MS.gene08822:intron 30.0%
CAATTTCCTGACAGTTTATT+TGG + chr4.2:13318152-13318171 None:intergenic 30.0%
CTTGTACATTGGAATTCAAT+AGG - chr4.2:13318103-13318122 MS.gene08822:intron 30.0%
GAAATTGTTGTGCTTGAAAT+AGG + chr4.2:13315543-13315562 None:intergenic 30.0%
GGTTATAGTATGCACTTAAT+GGG + chr4.2:13316856-13316875 None:intergenic 30.0%
TAATTCAGGGACTAAATTGA+TGG - chr4.2:13316488-13316507 MS.gene08822:CDS 30.0%
TAATTGGAGTTGCTAAATGT+TGG - chr4.2:13315833-13315852 MS.gene08822:CDS 30.0%
TCAGATATGAACTTGATATC+AGG - chr4.2:13317811-13317830 MS.gene08822:intron 30.0%
TCATCATATCACACTATTTC+TGG + chr4.2:13316295-13316314 None:intergenic 30.0%
TCTGAATATCACACTATTTC+TGG - chr4.2:13316222-13316241 MS.gene08822:CDS 30.0%
TGGATTTCATTGAGTCTAAT+TGG - chr4.2:13315817-13315836 MS.gene08822:CDS 30.0%
TGGCAGCTTATAATAAGAAA+AGG - chr4.2:13317647-13317666 MS.gene08822:intron 30.0%
TTGATTGATATGATGATACC+CGG - chr4.2:13316946-13316965 MS.gene08822:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr4.2:13316554-13316573 None:intergenic 30.0%
! GATGGTAAAGAATCTGAAAT+TGG - chr4.2:13318201-13318220 MS.gene08822:intron 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr4.2:13315591-13315610 None:intergenic 30.0%
! TAGGGACTAAATTTGAGATA+GGG - chr4.2:13316462-13316481 MS.gene08822:CDS 30.0%
!! GGCATCTTTTACTTTTAACA+TGG - chr4.2:13317963-13317982 MS.gene08822:intron 30.0%
!!! TGTTTGCCATTTTTGTTTTC+CGG + chr4.2:13316968-13316987 None:intergenic 30.0%
!!! TTGATGGTTTTATTCATGAC+TGG + chr4.2:13316195-13316214 None:intergenic 30.0%
!!! TTTTTTCATGGAAATGTCAC+AGG + chr4.2:13316725-13316744 None:intergenic 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr4.2:13317104-13317123 None:intergenic 35.0%
AAAGAAGTTTGCAGGTCTTA+TGG - chr4.2:13317174-13317193 MS.gene08822:intron 35.0%
AAATTAAGACCTACGAAGCA+TGG + chr4.2:13316069-13316088 None:intergenic 35.0%
AATTTCCTTACTGAAAGACC+AGG - chr4.2:13318345-13318364 MS.gene08822:CDS 35.0%
ACACTGAATTATGTCACTGT+CGG + chr4.2:13315978-13315997 None:intergenic 35.0%
AGCAATTTCAGACTGGAATT+TGG - chr4.2:13317730-13317749 MS.gene08822:intron 35.0%
ATAACTGTAGCTTAAGAGCT+TGG + chr4.2:13317476-13317495 None:intergenic 35.0%
ATCCATCTTTCATCATTCTC+AGG + chr4.2:13315861-13315880 None:intergenic 35.0%
ATTATAAGCTGCCAAATCCA+TGG + chr4.2:13317641-13317660 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr4.2:13317627-13317646 MS.gene08822:intron 35.0%
CAAATAGTGAGCAAGAAGAA+GGG - chr4.2:13318412-13318431 MS.gene08822:CDS 35.0%
CAGAGTTAAATTTAGTTGGC+AGG + chr4.2:13318079-13318098 None:intergenic 35.0%
CTCCATTAACATCAAGAACA+TGG - chr4.2:13318452-13318471 MS.gene08822:CDS 35.0%
CTGCCAACTAAATTTAACTC+TGG - chr4.2:13318077-13318096 MS.gene08822:intron 35.0%
CTTAGTCGAGTTTCAATTAG+TGG - chr4.2:13315711-13315730 MS.gene08822:CDS 35.0%
GCAATTTCAGACTGGAATTT+GGG - chr4.2:13317731-13317750 MS.gene08822:intron 35.0%
GGGTTATAGTATGCACTTAA+TGG + chr4.2:13316857-13316876 None:intergenic 35.0%
TGAGATAGGGTGATAATTCA+GGG - chr4.2:13316475-13316494 MS.gene08822:CDS 35.0%
TGATACCCGGAAAACAAAAA+TGG - chr4.2:13316959-13316978 MS.gene08822:intron 35.0%
TGTTGTGCTTGAAATAGGTT+GGG + chr4.2:13315538-13315557 None:intergenic 35.0%
TTGAGATAGGGTGATAATTC+AGG - chr4.2:13316474-13316493 MS.gene08822:CDS 35.0%
TTGTTGTGCTTGAAATAGGT+TGG + chr4.2:13315539-13315558 None:intergenic 35.0%
! AATCCATGGATTCGATTTTG+CGG + chr4.2:13317627-13317646 None:intergenic 35.0%
! AATTCCAGTCTGAAATTGCT+AGG + chr4.2:13317730-13317749 None:intergenic 35.0%
! ATTTGGAATTGCTCGATAGT+TGG + chr4.2:13318397-13318416 None:intergenic 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - chr4.2:13316070-13316089 MS.gene08822:CDS 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr4.2:13316461-13316480 MS.gene08822:CDS 35.0%
! GTGACTTGTGACTAAATTGA+CGG - chr4.2:13316397-13316416 MS.gene08822:CDS 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr4.2:13315416-13315435 None:intergenic 35.0%
! TGACTTGTGACTAAATTGAC+GGG - chr4.2:13316398-13316417 MS.gene08822:CDS 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr4.2:13317567-13317586 MS.gene08822:intron 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - chr4.2:13316076-13316095 MS.gene08822:CDS 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr4.2:13315577-13315596 None:intergenic 35.0%
!!! GTTTGCCATTTTTGTTTTCC+GGG + chr4.2:13316967-13316986 None:intergenic 35.0%
AAACCGAAATGTGGCTAATG+AGG - chr4.2:13318233-13318252 MS.gene08822:intron 40.0%
AACTCTGGCATCTTGTACAT+TGG - chr4.2:13318092-13318111 MS.gene08822:intron 40.0%
AATTATGTCACTGTCGGTGT+CGG + chr4.2:13315972-13315991 None:intergenic 40.0%
AGCTTAAGAGCTTGGATTGA+AGG + chr4.2:13317468-13317487 None:intergenic 40.0%
AGTTTCCACAAACCGAAATG+TGG - chr4.2:13318224-13318243 MS.gene08822:intron 40.0%
ATTGTCAACCAAGCTACCTT+CGG + chr4.2:13317707-13317726 None:intergenic 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr4.2:13316541-13316560 None:intergenic 40.0%
CAATCCTAGCAATTTCAGAC+TGG - chr4.2:13317723-13317742 MS.gene08822:intron 40.0%
CCAAATAGTGAGCAAGAAGA+AGG - chr4.2:13318411-13318430 MS.gene08822:CDS 40.0%
CCTTCTTCTTGCTCACTATT+TGG + chr4.2:13318414-13318433 None:intergenic 40.0%
CTATCACCTTCTTCAGTACT+TGG + chr4.2:13318048-13318067 None:intergenic 40.0%
CTGCAGAAAAATCTGTCTGA+AGG - chr4.2:13317868-13317887 MS.gene08822:intron 40.0%
CTGTCAGGAAATTGGCAATT+TGG - chr4.2:13318158-13318177 MS.gene08822:intron 40.0%
CTTTCACATGGCTAACCTAT+GGG - chr4.2:13316801-13316820 MS.gene08822:intron 40.0%
GACCTGAGAATGATGAAAGA+TGG - chr4.2:13315856-13315875 MS.gene08822:CDS 40.0%
GCTCCAGAGAATGAAGATTT+GGG + chr4.2:13318026-13318045 None:intergenic 40.0%
GCTTAAGAGCTTGGATTGAA+GGG + chr4.2:13317467-13317486 None:intergenic 40.0%
GGATGACTATGACTGTGAAT+AGG + chr4.2:13317370-13317389 None:intergenic 40.0%
TAGCCTCATTAGCCACATTT+CGG + chr4.2:13318239-13318258 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr4.2:13315418-13315437 MS.gene08822:CDS 40.0%
TCTTTCACATGGCTAACCTA+TGG - chr4.2:13316800-13316819 MS.gene08822:intron 40.0%
TGAAGCACAAACATAGACAC+CGG - chr4.2:13315918-13315937 MS.gene08822:CDS 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - chr4.2:13317396-13317415 MS.gene08822:intron 40.0%
TTGATATCAGGTAGCACACA+GGG - chr4.2:13317823-13317842 MS.gene08822:intron 40.0%
! AAGTTCATATCTGAGACAGC+TGG + chr4.2:13317805-13317824 None:intergenic 40.0%
! AATAGGTTGGGAGAAGAACA+CGG + chr4.2:13315526-13315545 None:intergenic 40.0%
! ATCCATGGATTCGATTTTGC+GGG + chr4.2:13317626-13317645 None:intergenic 40.0%
! ATGACTGACACGGGAAATTT+TGG + chr4.2:13316681-13316700 None:intergenic 40.0%
! ATTAGCCACATTTCGGTTTG+TGG + chr4.2:13318232-13318251 None:intergenic 40.0%
! CATACGTGTCATTGTTGTGT+CGG - chr4.2:13316001-13316020 MS.gene08822:CDS 40.0%
! CTTCAGACAGATTTTTCTGC+AGG + chr4.2:13317870-13317889 None:intergenic 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - chr4.2:13316075-13316094 MS.gene08822:CDS 40.0%
! TAAGGTGTTTGTGTTGTGTC+CGG + chr4.2:13315940-13315959 None:intergenic 40.0%
! TATCAATCTAGCTCCACCAA+AGG - chr4.2:13318257-13318276 MS.gene08822:CDS 40.0%
! TGACTGACACGGGAAATTTT+GGG + chr4.2:13316680-13316699 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr4.2:13316101-13316120 MS.gene08822:CDS 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr4.2:13317512-13317531 MS.gene08822:intron 40.0%
! TTCTGAAGAATATACACCGC+AGG - chr4.2:13317341-13317360 MS.gene08822:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr4.2:13316539-13316558 MS.gene08822:CDS 40.0%
AAAAGCAGATCCTGAGCGTT+GGG - chr4.2:13317279-13317298 MS.gene08822:intron 45.0%
AACCTGCGTCTAACCATACA+TGG - chr4.2:13316629-13316648 MS.gene08822:intron 45.0%
ACACTAGACCTTGCAGATAC+TGG - chr4.2:13317940-13317959 MS.gene08822:intron 45.0%
ACAGGAATGCAGACAAGAAC+TGG - chr4.2:13317898-13317917 MS.gene08822:intron 45.0%
ACAGGGTTCAAACGAAGATG+AGG - chr4.2:13317840-13317859 MS.gene08822:intron 45.0%
ACCTGCGTCTAACCATACAT+GGG - chr4.2:13316630-13316649 MS.gene08822:intron 45.0%
ACTAGACCTTGCAGATACTG+GGG - chr4.2:13317942-13317961 MS.gene08822:intron 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr4.2:13317101-13317120 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr4.2:13315453-13315472 None:intergenic 45.0%
AGAAGAACACGGGAGAATTC+AGG + chr4.2:13315515-13315534 None:intergenic 45.0%
AGACACATCATGACTGACAC+GGG + chr4.2:13316690-13316709 None:intergenic 45.0%
AGGCTGTTCAGACAATGAAG+AGG - chr4.2:13318365-13318384 MS.gene08822:CDS 45.0%
ATAGGAATTCATACTCGGCC+AGG - chr4.2:13318121-13318140 MS.gene08822:intron 45.0%
ATAGTGAGCAAGAAGAAGGG+CGG - chr4.2:13318415-13318434 MS.gene08822:CDS 45.0%
ATGTCTACGATGCAGAAGAC+AGG + chr4.2:13316902-13316921 None:intergenic 45.0%
ATTCTGCAGCATCTGGATCT+TGG - chr4.2:13316158-13316177 MS.gene08822:CDS 45.0%
CACTAGACCTTGCAGATACT+GGG - chr4.2:13317941-13317960 MS.gene08822:intron 45.0%
CAGACACATCATGACTGACA+CGG + chr4.2:13316691-13316710 None:intergenic 45.0%
CAGCATCTGGATCTTGGTAA+TGG - chr4.2:13316164-13316183 MS.gene08822:CDS 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr4.2:13315456-13315475 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr4.2:13315453-13315472 MS.gene08822:CDS 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr4.2:13316913-13316932 MS.gene08822:intron 45.0%
CTGCAAGGTCTAGTGTTTCA+GGG + chr4.2:13317936-13317955 None:intergenic 45.0%
CTTGATATCAGGTAGCACAC+AGG - chr4.2:13317822-13317841 MS.gene08822:intron 45.0%
GACTGTGAATAGGTTTCCTG+CGG + chr4.2:13317360-13317379 None:intergenic 45.0%
GAGTCAAGAGTTAACGCTGA+TGG - chr4.2:13318183-13318202 MS.gene08822:intron 45.0%
GGCTCCAGAGAATGAAGATT+TGG + chr4.2:13318027-13318046 None:intergenic 45.0%
GTGCCCAAATCTTCATTCTC+TGG - chr4.2:13318020-13318039 MS.gene08822:intron 45.0%
GTGTTTCAGGGGTAAAAGCA+AGG + chr4.2:13317924-13317943 None:intergenic 45.0%
GTTCGCGAATGTGTCATGAA+CGG - chr4.2:13316591-13316610 MS.gene08822:intron 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - chr4.2:13317395-13317414 MS.gene08822:intron 45.0%
TAAGAAAAGGCGATTGCCTC+AGG - chr4.2:13317660-13317679 MS.gene08822:intron 45.0%
TACGAAGCATGGACAATCCT+CGG + chr4.2:13316058-13316077 None:intergenic 45.0%
TCACAGTCATAGTCATCCTC+CGG - chr4.2:13317372-13317391 MS.gene08822:intron 45.0%
TCAGAAGACGTATGACATGG+TGG - chr4.2:13315421-13315440 MS.gene08822:CDS 45.0%
TCTGCAAGGTCTAGTGTTTC+AGG + chr4.2:13317937-13317956 None:intergenic 45.0%
TCTTCATTGTCTGAACAGCC+TGG + chr4.2:13318366-13318385 None:intergenic 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - chr4.2:13317498-13317517 MS.gene08822:intron 45.0%
TGCAAGGTCTAGTGTTTCAG+GGG + chr4.2:13317935-13317954 None:intergenic 45.0%
TTCCCGCAAAATCGAATCCA+TGG - chr4.2:13317621-13317640 MS.gene08822:intron 45.0%
! AACAGCCTGGTCTTTCAGTA+AGG + chr4.2:13318353-13318372 None:intergenic 45.0%
! ACGGGGTGAATGATGTGTTT+TGG - chr4.2:13318319-13318338 MS.gene08822:CDS 45.0%
! ATAGGTTGGGAGAAGAACAC+GGG + chr4.2:13315525-13315544 None:intergenic 45.0%
! CGGGGTGAATGATGTGTTTT+GGG - chr4.2:13318320-13318339 MS.gene08822:CDS 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - chr4.2:13317576-13317595 MS.gene08822:intron 45.0%
AAGATGCCCCAGTATCTGCA+AGG + chr4.2:13317951-13317970 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr4.2:13318276-13318295 None:intergenic 50.0%
AGAACACGGGAGAATTCAGG+AGG + chr4.2:13315512-13315531 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr4.2:13317405-13317424 MS.gene08822:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr4.2:13317373-13317392 MS.gene08822:intron 50.0%
CTACGATGCAGAAGACAGGT+AGG + chr4.2:13316898-13316917 None:intergenic 50.0%
CTGTCTGAAGGAGAACTGAC+AGG - chr4.2:13317880-13317899 MS.gene08822:intron 50.0%
GAAAAGCAGATCCTGAGCGT+TGG - chr4.2:13317278-13317297 MS.gene08822:intron 50.0%
GAACACGGGAGAATTCAGGA+GGG + chr4.2:13315511-13315530 None:intergenic 50.0%
GAGGATTGTCCATGCTTCGT+AGG - chr4.2:13316057-13316076 MS.gene08822:CDS 50.0%
GATTAGGTGTGTCCTGACGT+CGG + chr4.2:13316036-13316055 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr4.2:13317536-13317555 MS.gene08822:intron 50.0%
GCATGGACAATCCTCGGATT+AGG + chr4.2:13316052-13316071 None:intergenic 50.0%
GTCGCCCCAAATAAACTGTC+AGG - chr4.2:13318143-13318162 MS.gene08822:intron 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr4.2:13316092-13316111 MS.gene08822:CDS 50.0%
TCCAAGTCAAAGCTGCTGCT+CGG - chr4.2:13318295-13318314 MS.gene08822:CDS 50.0%
TCTGGATCTACAGCAGAACC+CGG + chr4.2:13317394-13317413 None:intergenic 50.0%
TTACCTGAAGCCTCCTTTGG+TGG + chr4.2:13318273-13318292 None:intergenic 50.0%
! ACAGTTTATTTGGGGCGACC+TGG + chr4.2:13318142-13318161 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr4.2:13315567-13315586 None:intergenic 50.0%
! CAATCTAGCTCCACCAAAGG+AGG - chr4.2:13318260-13318279 MS.gene08822:CDS 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr4.2:13317523-13317542 MS.gene08822:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr4.2:13317519-13317538 MS.gene08822:intron 50.0%
! GGCTAACCTATGGGTGCTTT+TGG - chr4.2:13316810-13316829 MS.gene08822:intron 50.0%
! GGTTAGACGCAGGTTCTAAC+TGG + chr4.2:13316624-13316643 None:intergenic 50.0%
! GTCTTCTGAAGAAACGGTGC+CGG + chr4.2:13315410-13315429 None:intergenic 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr4.2:13316088-13316107 MS.gene08822:CDS 50.0%
!! AGGGTTCCAAAAGCACCCAT+AGG + chr4.2:13316819-13316838 None:intergenic 50.0%
!! CTGGAGCCAAGTACTGAAGA+AGG - chr4.2:13318039-13318058 MS.gene08822:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr4.2:13317700-13317719 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr4.2:13317097-13317116 None:intergenic 55.0%
GAAGAAGGGCGGTCAGTTCA+TGG - chr4.2:13318426-13318445 MS.gene08822:CDS 55.0%
GCCCATGTATGGTTAGACGC+AGG + chr4.2:13316634-13316653 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr4.2:13316091-13316110 MS.gene08822:CDS 55.0%
GTCAGGACACACCTAATCCG+AGG - chr4.2:13316038-13316057 MS.gene08822:CDS 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr4.2:13317098-13317117 None:intergenic 55.0%
TGCTCCAATGCTGCCCTTTC+TGG + chr4.2:13317412-13317431 None:intergenic 55.0%
TTGGCAAACTCCCAACGCTC+AGG + chr4.2:13317292-13317311 None:intergenic 55.0%
GCAGCGGCTGATGAGGATTG+TGG + chr4.2:13315365-13315384 None:intergenic 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr4.2:13317696-13317715 MS.gene08822:intron 60.0%
GCTCCACCAAAGGAGGCTTC+AGG - chr4.2:13318267-13318286 MS.gene08822:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG + chr4.2:13317391-13317410 None:intergenic 60.0%
GGCTGCACGTGATCAACCTG+AGG + chr4.2:13317679-13317698 None:intergenic 60.0%
GTCAAAGCTGCTGCTCGGCA+CGG - chr4.2:13318300-13318319 MS.gene08822:CDS 60.0%
TCAAAGCTGCTGCTCGGCAC+GGG - chr4.2:13318301-13318320 MS.gene08822:CDS 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr4.2:13317528-13317547 MS.gene08822:intron 60.0%
! GCCGAGCAGCAGCTTTGACT+TGG + chr4.2:13318299-13318318 None:intergenic 60.0%
!! GTCACTGTCGGTGTCGGTGT+CGG + chr4.2:13315966-13315985 None:intergenic 60.0%
CAAAGCTGCTGCTCGGCACG+GGG - chr4.2:13318302-13318321 MS.gene08822:CDS 65.0%
CACGTGCAGCCTGTTGCCGA+AGG - chr4.2:13317688-13317707 MS.gene08822:intron 65.0%
! CGGTGTCAGACACCGACGTC+AGG - chr4.2:13316021-13316040 MS.gene08822:CDS 65.0%
!! CGGTGTCGGTGTCGGCGATA+AGG + chr4.2:13315958-13315977 None:intergenic 65.0%
ACCTCCTCCGCTTCCTCCGG+CGG + chr4.2:13315387-13315406 None:intergenic 70.0%
CGGACCTCCTCCGCTTCCTC+CGG + chr4.2:13315390-13315409 None:intergenic 70.0%
CGGAGGAAGCGGAGGAGGTC+CGG - chr4.2:13315388-13315407 MS.gene08822:CDS 70.0%
TCCTCATCAGCCGCTGCCGC+CGG - chr4.2:13315368-13315387 MS.gene08822:CDS 70.0%
TCATCAGCCGCTGCCGCCGG+AGG - chr4.2:13315371-13315390 MS.gene08822:CDS 75.0%
TCCGCTTCCTCCGGCGGCAG+CGG + chr4.2:13315381-13315400 None:intergenic 75.0%
TCCGGCGGCAGCGGCTGATG+AGG + chr4.2:13315372-13315391 None:intergenic 75.0%
! GCCGCCGGAGGAAGCGGAGG+AGG - chr4.2:13315383-13315402 MS.gene08822:CDS 80.0%
! GCCGCTGCCGCCGGAGGAAG+CGG - chr4.2:13315377-13315396 MS.gene08822:CDS 80.0%
! GCTGCCGCCGGAGGAAGCGG+AGG - chr4.2:13315380-13315399 MS.gene08822:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 13315350 13318491 13315350 ID=MS.gene08822
chr4.2 mRNA 13315350 13318491 13315350 ID=MS.gene08822.t1;Parent=MS.gene08822
chr4.2 exon 13318249 13318491 13318249 ID=MS.gene08822.t1.exon1;Parent=MS.gene08822.t1
chr4.2 CDS 13318249 13318491 13318249 ID=cds.MS.gene08822.t1;Parent=MS.gene08822.t1
chr4.2 exon 13315350 13316570 13315350 ID=MS.gene08822.t1.exon2;Parent=MS.gene08822.t1
chr4.2 CDS 13315350 13316570 13315350 ID=cds.MS.gene08822.t1;Parent=MS.gene08822.t1
Gene Sequence

>MS.gene08822

ATGAATTCTGCACCACAATCCTCATCAGCCGCTGCCGCCGGAGGAAGCGGAGGAGGTCCGGCACCGTTTCTTCAGAAGACGTATGACATGGTGGATGATTCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATTGTTTGGAACCCTCCTGAATTCTCCCGTGTTCTTCTCCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCATGCTATACGCTTCTTTTGATTGTTTCATTGTTATTTTGTATGATCAATTAGTTATTGTTTTTGTTTGATTGTTTGTTGTATTTGTATGATTTGATTTCATTGTGTCTTAGTCGAGTTTCAATTAGTGGATATTGATTGTTATGATATGATCATTAAGAGATTGATGAAAAAATCTGCTTAGTAAGATAGGAATTATGAACAAATTTAGATTTGGATTTCATTGAGTCTAATTGGAGTTGCTAAATGTTGGGACCTGAGAATGATGAAAGATGGATGAGATATTATATAGTCTTGTACTGCACTTTTATGCTATGAAGCACAAACATAGACACCGGACACAACACAAACACCTTATCGCCGACACCGACACCGACAGTGACATAATTCAGTGTTATCATACGTGTCATTGTTGTGTCGGTGTCAGACACCGACGTCAGGACACACCTAATCCGAGGATTGTCCATGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAACAATCAAAAAAAATTCTGCAGCATCTGGATCTTGGTAATGGTACATCCAGTCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCTGGTTTATTTCCTGAACTATATAAATATGATATGATGATATGGAAATAAACCAGAAATAGTGTGATATGATGATACCCGAAAAACAAAAATGTGTCAATTTAGTCTTTGAAGTATATGGAAATTCGTCAATTTTGTCTCAAACATCTTAATTGTTGTGACTTGTGACTAAATTGACGGGTTTCATATGCTTTAGAGACTACTTATCATGTTTCTATAGTGTAGGGACTAAATTTGAGATAGGGTGATAATTCAGGGACTAAATTGATGGTTTACAATCAGTGATCAAATAATTGCGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCACTACAAAAAAGAAGTTCGCGAATGTGTCATGAACGGAAAATGACCAGTTAGAACCTGCGTCTAACCATACATGGGCAATTATTGAATTTAAAGGATTTACCCAAAATTTCCCGTGTCAGTCATGATGTGTCTGCGATGTTATTTCCTGTGACATTTCCATGAAAAAAAAAAAGTTAGCTTGTTTTTCTTTTATAATTATACAAATATTACCTTATTTTCAAATCTTTCACATGGCTAACCTATGGGTGCTTTTGGAACCCTAAATGTTAAATTTTCCCATTAAGTGCATACTATAACCCAGATTTTTATTGTTTAATCCTACCTGTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGATTGATATGATGATACCCGGAAAACAAAAATGGCAAACATCCTATATTGTAAATTTTTATTGAACTTGTTGAAATTGATATCTAACTCTTAGATAGGATTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGGCCCACCGCCAGATTTGCTTCCTGAAGTTTTTATGTGTGTAATGAAGAATATTTTTGTAAAGATTTAATGGTAAATCATTCAAAGAAGTTTGCAGGTCTTATGGCTTTAATGATAAACAATTGTTTATGAATTTATGTTTTAATTTGTTATGGTTTATTTATATGTGCTTTTTATCAGGGATTTCGAAAAGCAGATCCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATTCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGAAGCTGTCTCGCGAGAAAAATGCCCTTCAATCCAAGCTCTTAAGCTACAGTTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTTATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGCAGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACGTGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACAATCCTAGCAATTTCAGACTGGAATTTGGGAATGTATTCCCTCAAGATATCTCAAATAAACTCAGACTAGAATTGTCACCAGCTGTCTCAGATATGAACTTGATATCAGGTAGCACACAGGGTTCAAACGAAGATGAGGAAAGCCTGCAGAAAAATCTGTCTGAAGGAGAACTGACAGGAATGCAGACAAGAACTGGCCTTGCTTTTACCCCTGAAACACTAGACCTTGCAGATACTGGGGCATCTTTTACTTTTAACATGGATTCGTGTTTATCACAAAGAGCAACTACTACTGAGTGCCCAAATCTTCATTCTCTGGAGCCAAGTACTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACATTGGAATTCAATAGGAATTCATACTCGGCCAGGTCGCCCCAAATAAACTGTCAGGAAATTGGCAATTTGGCAGAGTCAAGAGTTAACGCTGATGGTAAAGAATCTGAAATTGGAGTTTCCACAAACCGAAATGTGGCTAATGAGGCTATCAATCTAGCTCCACCAAAGGAGGCTTCAGGTAACGTCCAAGTCAAAGCTGCTGCTCGGCACGGGGTGAATGATGTGTTTTGGGAAAATTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAATTCCAAATAGTGAGCAAGAAGAAGGGCGGTCAGTTCATGGAATCTCCATTAACATCAAGAACATGGATAATCTCACCCTTTGA
Protein sequence

>MS.gene08822.t1

MNSAPQSSSAAAAGGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAALEQEIEKLSREKNALQSKLLSYSYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLAAYNKKRRLPQVDHVQPVAEGSLVDNPSNFRLEFGNVFPQDISNKLRLELSPAVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTRTGLAFTPETLDLADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFNRNSYSARSPQINCQEIGNLAESRVNADGKESEIGVSTNRNVANEAINLAPPKEASGNVQVKAAARHGVNDVFWENFLTERPGCSDNEEAISNYRAIPNSEQEEGRSVHGISINIKNMDNLTL