Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050505.t1 | XP_003626394.1 | 85 | 441 | 60 | 3 | 1 | 435 | 1 | 441 | 1.40E-135 | 493 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050505.t1 | F4K5T4 | 37.8 | 400 | 185 | 9 | 45 | 429 | 73 | 423 | 3.9e-54 | 213.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050505.t1 | G7L0U1 | 85.0 | 441 | 60 | 3 | 1 | 435 | 1 | 441 | 1.0e-135 | 493.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050505.t1 | TF | GeBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050505 | MS.gene060336 | 0.830725 | 2.50E-55 | -1.69E-46 |
| MS.gene050505 | MS.gene061609 | 0.807615 | 4.63E-50 | -1.69E-46 |
| MS.gene050505 | MS.gene06869 | -0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene050505 | MS.gene08822 | 0.808419 | 3.13E-50 | -1.69E-46 |
| MS.gene050505 | MS.gene09269 | 0.806321 | 8.71E-50 | -1.69E-46 |
| MS.gene050505 | MS.gene49767 | -0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene050505 | MS.gene51616 | -0.800756 | 1.24E-48 | -1.69E-46 |
| MS.gene050505 | MS.gene56245 | -0.825362 | 4.89E-54 | -1.69E-46 |
| MS.gene050505 | MS.gene60402 | -0.80982 | 1.57E-50 | -1.69E-46 |
| MS.gene050505 | MS.gene70118 | -0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene050505 | MS.gene84371 | -0.803299 | 3.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050505.t1 | MTR_7g114600 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| MS.gene050505.t1 | MTR_1g081580 | 43.377 | 385 | 140 | 13 | 54 | 427 | 53 | 370 | 4.85e-76 | 242 |
| MS.gene050505.t1 | MTR_1g081560 | 50.000 | 106 | 45 | 3 | 101 | 201 | 127 | 229 | 9.37e-25 | 105 |
| MS.gene050505.t1 | MTR_1g081560 | 39.815 | 108 | 46 | 4 | 323 | 428 | 282 | 372 | 5.36e-13 | 70.5 |
| MS.gene050505.t1 | MTR_1g081570 | 52.874 | 87 | 26 | 1 | 112 | 198 | 28 | 99 | 9.99e-21 | 87.0 |
| MS.gene050505.t1 | MTR_3g070120 | 33.929 | 112 | 66 | 2 | 106 | 217 | 153 | 256 | 2.84e-14 | 74.3 |
| MS.gene050505.t1 | MTR_2g010790 | 34.615 | 104 | 58 | 2 | 100 | 203 | 198 | 291 | 8.88e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050505.t1 | AT5G28040 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.40e-87 | 271 |
| MS.gene050505.t1 | AT5G28040 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.40e-87 | 271 |
| MS.gene050505.t1 | AT3G04930 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 6.24e-60 | 201 |
| MS.gene050505.t1 | AT3G04930 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 4.38e-59 | 200 |
| MS.gene050505.t1 | AT3G04930 | 37.584 | 149 | 60 | 6 | 305 | 429 | 313 | 452 | 1.09e-15 | 79.3 |
| MS.gene050505.t1 | AT4G00390 | 36.420 | 162 | 80 | 5 | 40 | 200 | 108 | 247 | 1.37e-19 | 90.1 |
| MS.gene050505.t1 | AT1G61730 | 36.486 | 148 | 78 | 4 | 53 | 200 | 114 | 245 | 1.47e-19 | 90.1 |
| MS.gene050505.t1 | AT4G01260 | 36.181 | 199 | 102 | 8 | 39 | 215 | 36 | 231 | 4.25e-19 | 88.2 |
| MS.gene050505.t1 | AT1G11510 | 39.535 | 129 | 71 | 3 | 78 | 202 | 106 | 231 | 9.18e-19 | 87.8 |
| MS.gene050505.t1 | AT1G11510 | 40.777 | 103 | 58 | 1 | 100 | 202 | 103 | 202 | 1.19e-18 | 87.0 |
| MS.gene050505.t1 | AT4G25210 | 36.641 | 131 | 69 | 4 | 84 | 201 | 110 | 239 | 2.88e-17 | 83.6 |
| MS.gene050505.t1 | AT1G44810 | 36.066 | 122 | 68 | 2 | 91 | 208 | 107 | 222 | 1.04e-15 | 77.8 |
| MS.gene050505.t1 | AT2G01370 | 38.614 | 101 | 57 | 3 | 101 | 199 | 74 | 171 | 1.41e-14 | 73.9 |
| MS.gene050505.t1 | AT4G00610 | 32.520 | 123 | 71 | 3 | 80 | 199 | 120 | 233 | 5.29e-13 | 70.1 |
| MS.gene050505.t1 | AT2G25650 | 33.684 | 95 | 63 | 0 | 105 | 199 | 64 | 158 | 2.18e-11 | 65.9 |
| MS.gene050505.t1 | AT5G14280 | 30.526 | 95 | 66 | 0 | 108 | 202 | 63 | 157 | 7.55e-11 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGGAAGCAACAGATTT+TGG | 0.165742 | 7.2:+2849664 | MS.gene050505:CDS |
| CCGTTTCAGACGATGAATTT+AGG | 0.215452 | 7.2:+2849611 | MS.gene050505:CDS |
| GAGTTGTTTATCGCCGTTTA+AGG | 0.229902 | 7.2:+2849520 | MS.gene050505:CDS |
| TCCGTCACCGTCGCCGTTCC+CGG | 0.291496 | 7.2:+2848633 | MS.gene050505:CDS |
| CAGACGATGAATTTAGGTTT+TGG | 0.306437 | 7.2:+2849617 | MS.gene050505:CDS |
| GTAGCATAAGCATTAGGATT+AGG | 0.338681 | 7.2:-2849350 | None:intergenic |
| TTGATCCAAACGTTGACGTT+TGG | 0.362708 | 7.2:-2848724 | None:intergenic |
| GCAGTTGTAGCATAAGCATT+AGG | 0.365701 | 7.2:-2849356 | None:intergenic |
| ACGGGAGTGAAATTGAGGTT+AGG | 0.366561 | 7.2:-2849146 | None:intergenic |
| GCAGCATTAGTATTAACATT+AGG | 0.376257 | 7.2:-2849416 | None:intergenic |
| CGATTCCAAACGTCAACGTT+TGG | 0.378466 | 7.2:+2848719 | MS.gene050505:CDS |
| AGTAATAATTGTAGTACTGC+TGG | 0.385802 | 7.2:+2849461 | MS.gene050505:CDS |
| TTGTGATTAGGATAGGGATT+AGG | 0.391090 | 7.2:-2849314 | None:intergenic |
| CAAACGTTGACGTTTGGAAT+CGG | 0.393384 | 7.2:-2848718 | None:intergenic |
| GGAAGTGTATTCAAAGAGAT+TGG | 0.394682 | 7.2:+2849691 | MS.gene050505:CDS |
| ACATTAGGAGTAGTAATTGT+AGG | 0.395915 | 7.2:-2849401 | None:intergenic |
| CGGGAGTGAAATTGAGGTTA+GGG | 0.396355 | 7.2:-2849145 | None:intergenic |
| TTGAAATCTCTCGCAAGATC+TGG | 0.402112 | 7.2:+2849051 | MS.gene050505:CDS |
| TGGAGGTCTGAGAGCTCCTC+CGG | 0.404026 | 7.2:-2848652 | None:intergenic |
| GCAATGGGAGGAGGACTGTT+TGG | 0.407072 | 7.2:+2849557 | MS.gene050505:CDS |
| ATCGCCGTTTAAGGAATTGA+TGG | 0.410493 | 7.2:+2849529 | MS.gene050505:CDS |
| TTGTGATTGTGATTGTGATT+AGG | 0.420049 | 7.2:-2849326 | None:intergenic |
| GTAATTGTAGGTGTTATTGC+AGG | 0.422477 | 7.2:-2849389 | None:intergenic |
| GTTGCGGTTGGTGTTAGAAT+TGG | 0.424821 | 7.2:-2848672 | None:intergenic |
| CCAGCCATCAATTCCTTAAA+CGG | 0.436526 | 7.2:-2849533 | None:intergenic |
| GAGAATTGGTGGATGAGAAA+TGG | 0.440436 | 7.2:+2849645 | MS.gene050505:CDS |
| TTGAGGTTAGGGTTAGGACT+TGG | 0.440851 | 7.2:-2849134 | None:intergenic |
| GATGTCTTCTTCAGCGAAAA+CGG | 0.442070 | 7.2:-2848499 | None:intergenic |
| GTGAAATTGAGGTTAGGGTT+AGG | 0.470406 | 7.2:-2849140 | None:intergenic |
| GATGAATTGCGTTCAGTTGG+TGG | 0.477018 | 7.2:+2849746 | MS.gene050505:CDS |
| GAATTGATGGCTGGTGCAAT+GGG | 0.477602 | 7.2:+2849542 | MS.gene050505:CDS |
| GATAGGGATTAGGATTATTG+AGG | 0.478564 | 7.2:-2849304 | None:intergenic |
| CAACCACGCGGAAGCGTTCA+CGG | 0.479940 | 7.2:+2849192 | MS.gene050505:CDS |
| GTCGTGTTGCTGTGAAGCCA+TGG | 0.481747 | 7.2:-2848475 | None:intergenic |
| GCGGTTGGTGTTAGAATTGG+AGG | 0.483246 | 7.2:-2848669 | None:intergenic |
| GTTGAAATCGAGTTGAAGCT+TGG | 0.492100 | 7.2:-2848913 | None:intergenic |
| CCTAAATTCATCGTCTGAAA+CGG | 0.495889 | 7.2:-2849611 | None:intergenic |
| GGCGAAGATGATCGTGGTTG+CGG | 0.497664 | 7.2:-2848688 | None:intergenic |
| CTCAAAGCTTCTGATAGAAA+CGG | 0.498357 | 7.2:-2849222 | None:intergenic |
| TCCGGGAACGGCGACGGTGA+CGG | 0.500148 | 7.2:-2848634 | None:intergenic |
| GAATTACGGGAGTGAAATTG+AGG | 0.501359 | 7.2:-2849151 | None:intergenic |
| AGCTCCTCCGGGAACGGCGA+CGG | 0.517162 | 7.2:-2848640 | None:intergenic |
| TCAACGTTTGGATCAAATTG+AGG | 0.517701 | 7.2:+2848731 | MS.gene050505:CDS |
| TGCGGATCTTCTCAACGAGC+TGG | 0.526099 | 7.2:-2848941 | None:intergenic |
| GGCGACGGTGACGGAGGGAA+CGG | 0.527528 | 7.2:-2848625 | None:intergenic |
| TCGTGTTGCTGTGAAGCCAT+GGG | 0.528982 | 7.2:-2848474 | None:intergenic |
| ATAGTAACATCACCGGCGAT+TGG | 0.530842 | 7.2:-2849086 | None:intergenic |
| ACTGCTGGGAATGGTGTAGC+TGG | 0.532760 | 7.2:+2849476 | MS.gene050505:CDS |
| CCGTTTAAGGAATTGATGGC+TGG | 0.533833 | 7.2:+2849533 | MS.gene050505:CDS |
| ATGGCTGGTGCAATGGGAGG+AGG | 0.535572 | 7.2:+2849548 | MS.gene050505:CDS |
| GAGCAAAATGAGCTCTGGTA+AGG | 0.538676 | 7.2:+2848992 | MS.gene050505:CDS |
| CGTGAATCTTCAACCATAGG+TGG | 0.540544 | 7.2:-2848762 | None:intergenic |
| CTTGATGAATTGCGTTCAGT+TGG | 0.542946 | 7.2:+2849743 | MS.gene050505:CDS |
| ACGTTTGGAATCGGTTGAGT+CGG | 0.547440 | 7.2:-2848709 | None:intergenic |
| GTTGTGAGCAAAATGAGCTC+TGG | 0.549041 | 7.2:+2848987 | MS.gene050505:CDS |
| ATGGACCGACGAAGACGAGA+TGG | 0.549218 | 7.2:+2848803 | MS.gene050505:CDS |
| GGAATTGATGGCTGGTGCAA+TGG | 0.550630 | 7.2:+2849541 | MS.gene050505:CDS |
| GTAATAATTGTAGTACTGCT+GGG | 0.552619 | 7.2:+2849462 | MS.gene050505:CDS |
| ATTGTGATTGTGATTAGGAT+AGG | 0.560354 | 7.2:-2849321 | None:intergenic |
| TTGCGTGAATCTTCAACCAT+AGG | 0.563271 | 7.2:-2848765 | None:intergenic |
| CTTGCGAGAGATTTCAAACG+TGG | 0.563273 | 7.2:-2849045 | None:intergenic |
| GACGAGATGGAACTGTTACA+AGG | 0.568392 | 7.2:+2848816 | MS.gene050505:CDS |
| TTGTGATTGTGATTAGGATA+GGG | 0.568508 | 7.2:-2849320 | None:intergenic |
| TCTGAGAGCTCCTCCGGGAA+CGG | 0.571875 | 7.2:-2848646 | None:intergenic |
| AGCTCGTTGAGAAGATCCGC+AGG | 0.575154 | 7.2:+2848943 | MS.gene050505:CDS |
| GGAACGGCGACGGTGACGGA+GGG | 0.575721 | 7.2:-2848630 | None:intergenic |
| CGAATACGAAGAAGAAGATG+AGG | 0.576730 | 7.2:+2848545 | MS.gene050505:CDS |
| AACAACGTAGCGCCAATCGC+CGG | 0.577047 | 7.2:+2849074 | MS.gene050505:CDS |
| GGAGGTCTGAGAGCTCCTCC+GGG | 0.580886 | 7.2:-2848651 | None:intergenic |
| GGAGGACTGTTTGGATCGCG+TGG | 0.584367 | 7.2:+2849566 | MS.gene050505:CDS |
| TGTATTTCTTCTTCAACCTG+CGG | 0.587483 | 7.2:-2848959 | None:intergenic |
| AATTGGTGGATGAGAAATGG+AGG | 0.596698 | 7.2:+2849648 | MS.gene050505:CDS |
| AAGATGATCGTGGTTGCGGT+TGG | 0.598224 | 7.2:-2848684 | None:intergenic |
| GGGAACGGCGACGGTGACGG+AGG | 0.599600 | 7.2:-2848631 | None:intergenic |
| CAGTTCCATCTCGTCTTCGT+CGG | 0.601304 | 7.2:-2848808 | None:intergenic |
| AATTGTAGTACTGCTGGGAA+TGG | 0.606803 | 7.2:+2849467 | MS.gene050505:CDS |
| TTCATCGTCTGAAACGGTAG+CGG | 0.613739 | 7.2:-2849605 | None:intergenic |
| GGAACGGAGATAGAAGCAGA+TGG | 0.620359 | 7.2:-2848609 | None:intergenic |
| GTCGTCTATAGTAACATCAC+CGG | 0.620625 | 7.2:-2849093 | None:intergenic |
| TTGATGGCTGGTGCAATGGG+AGG | 0.622136 | 7.2:+2849545 | MS.gene050505:CDS |
| CTCGATTACACAACACAGAG+AGG | 0.638279 | 7.2:+2848843 | MS.gene050505:CDS |
| TCCCGTAATTCTCAAAAGCG+AGG | 0.641190 | 7.2:+2849163 | MS.gene050505:CDS |
| GATTTGATCGTAGAATTGAG+CGG | 0.644134 | 7.2:-2848886 | None:intergenic |
| CTTCTGATAGAAACGGATCG+AGG | 0.677211 | 7.2:-2849215 | None:intergenic |
| TGAGTCGGCGAAGATGATCG+TGG | 0.687674 | 7.2:-2848694 | None:intergenic |
| GAAGCGTGAATCAAATGATG+CGG | 0.695426 | 7.2:+2849244 | MS.gene050505:CDS |
| GTCACCGTCGCCGTTCCCGG+AGG | 0.698715 | 7.2:+2848636 | MS.gene050505:CDS |
| AGGCCGTGAACGCTTCCGCG+TGG | 0.708545 | 7.2:-2849195 | None:intergenic |
| GTGTGATTGAAGAGACAGTG+AGG | 0.762218 | 7.2:+2849498 | MS.gene050505:CDS |
| GCGAGGTAAATTCAACCACG+CGG | 0.795949 | 7.2:+2849180 | MS.gene050505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACATTAGGAGTAGTAATTGT+AGG | - | chr7.2:2849404-2849423 | None:intergenic | 30.0% | |
| AGTAATAATTGTAGTACTGC+TGG | + | chr7.2:2849461-2849480 | MS.gene050505:CDS | 30.0% | |
| ATTGTGATTGTGATTAGGAT+AGG | - | chr7.2:2849324-2849343 | None:intergenic | 30.0% | |
| GCAGCATTAGTATTAACATT+AGG | - | chr7.2:2849419-2849438 | None:intergenic | 30.0% | |
| GTAATAATTGTAGTACTGCT+GGG | + | chr7.2:2849462-2849481 | MS.gene050505:CDS | 30.0% | |
| TTGTGATTGTGATTAGGATA+GGG | - | chr7.2:2849323-2849342 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTGTGATT+AGG | - | chr7.2:2849329-2849348 | None:intergenic | 30.0% | |
| CCTAAATTCATCGTCTGAAA+CGG | - | chr7.2:2849614-2849633 | None:intergenic | 35.0% | |
| CTCAAAGCTTCTGATAGAAA+CGG | - | chr7.2:2849225-2849244 | None:intergenic | 35.0% | |
| GATAGGGATTAGGATTATTG+AGG | - | chr7.2:2849307-2849326 | None:intergenic | 35.0% | |
| GATTTGATCGTAGAATTGAG+CGG | - | chr7.2:2848889-2848908 | None:intergenic | 35.0% | |
| GTAGCATAAGCATTAGGATT+AGG | - | chr7.2:2849353-2849372 | None:intergenic | 35.0% | |
| TCAACGTTTGGATCAAATTG+AGG | + | chr7.2:2848731-2848750 | MS.gene050505:CDS | 35.0% | |
| TGTATTTCTTCTTCAACCTG+CGG | - | chr7.2:2848962-2848981 | None:intergenic | 35.0% | |
| TTGTGATTAGGATAGGGATT+AGG | - | chr7.2:2849317-2849336 | None:intergenic | 35.0% | |
| ! | GGAAGTGTATTCAAAGAGAT+TGG | + | chr7.2:2849691-2849710 | MS.gene050505:CDS | 35.0% |
| !! | ACGATGAATTTAGGTTTTGG+AGG | + | chr7.2:2849620-2849639 | MS.gene050505:CDS | 35.0% |
| !! | CAGACGATGAATTTAGGTTT+TGG | + | chr7.2:2849617-2849636 | MS.gene050505:CDS | 35.0% |
| !! | GTAATTGTAGGTGTTATTGC+AGG | - | chr7.2:2849392-2849411 | None:intergenic | 35.0% |
| !! | TACCTCGCTTTTGAGAATTA+CGG | - | chr7.2:2849168-2849187 | None:intergenic | 35.0% |
| !!! | ATGAATTTAGGTTTTGGAGG+TGG | + | chr7.2:2849623-2849642 | MS.gene050505:CDS | 35.0% |
| !!! | GAAGCAACAGATTTTGGAAT+TGG | + | chr7.2:2849670-2849689 | MS.gene050505:CDS | 35.0% |
| AATTGTAGTACTGCTGGGAA+TGG | + | chr7.2:2849467-2849486 | MS.gene050505:CDS | 40.0% | |
| ATCGCCGTTTAAGGAATTGA+TGG | + | chr7.2:2849529-2849548 | MS.gene050505:CDS | 40.0% | |
| CCAGCCATCAATTCCTTAAA+CGG | - | chr7.2:2849536-2849555 | None:intergenic | 40.0% | |
| CCGTTTCAGACGATGAATTT+AGG | + | chr7.2:2849611-2849630 | MS.gene050505:CDS | 40.0% | |
| CGAATACGAAGAAGAAGATG+AGG | + | chr7.2:2848545-2848564 | MS.gene050505:CDS | 40.0% | |
| CTTGATGAATTGCGTTCAGT+TGG | + | chr7.2:2849743-2849762 | MS.gene050505:CDS | 40.0% | |
| GAAGCGTGAATCAAATGATG+CGG | + | chr7.2:2849244-2849263 | MS.gene050505:CDS | 40.0% | |
| GAATTACGGGAGTGAAATTG+AGG | - | chr7.2:2849154-2849173 | None:intergenic | 40.0% | |
| GAGTTGTTTATCGCCGTTTA+AGG | + | chr7.2:2849520-2849539 | MS.gene050505:CDS | 40.0% | |
| GATGTCTTCTTCAGCGAAAA+CGG | - | chr7.2:2848502-2848521 | None:intergenic | 40.0% | |
| GCAGTTGTAGCATAAGCATT+AGG | - | chr7.2:2849359-2849378 | None:intergenic | 40.0% | |
| GTCGTCTATAGTAACATCAC+CGG | - | chr7.2:2849096-2849115 | None:intergenic | 40.0% | |
| GTGAAATTGAGGTTAGGGTT+AGG | - | chr7.2:2849143-2849162 | None:intergenic | 40.0% | |
| TGAGGAGAAAAAACCACCTA+TGG | + | chr7.2:2848749-2848768 | MS.gene050505:CDS | 40.0% | |
| TTGAAATCTCTCGCAAGATC+TGG | + | chr7.2:2849051-2849070 | MS.gene050505:CDS | 40.0% | |
| TTGATCCAAACGTTGACGTT+TGG | - | chr7.2:2848727-2848746 | None:intergenic | 40.0% | |
| TTGCGTGAATCTTCAACCAT+AGG | - | chr7.2:2848768-2848787 | None:intergenic | 40.0% | |
| ! | AATTGGTGGATGAGAAATGG+AGG | + | chr7.2:2849648-2849667 | MS.gene050505:CDS | 40.0% |
| ! | ATGGAGGAAGCAACAGATTT+TGG | + | chr7.2:2849664-2849683 | MS.gene050505:CDS | 40.0% |
| ! | CAAACGTTGACGTTTGGAAT+CGG | - | chr7.2:2848721-2848740 | None:intergenic | 40.0% |
| ! | GAGAATTGGTGGATGAGAAA+TGG | + | chr7.2:2849645-2849664 | MS.gene050505:CDS | 40.0% |
| !! | ACCTCGCTTTTGAGAATTAC+GGG | - | chr7.2:2849167-2849186 | None:intergenic | 40.0% |
| !! | GTTGAAATCGAGTTGAAGCT+TGG | - | chr7.2:2848916-2848935 | None:intergenic | 40.0% |
| !!! | GCAAGCTTTTTCAACGTCTA+TGG | + | chr7.2:2848784-2848803 | MS.gene050505:CDS | 40.0% |
| ACGGGAGTGAAATTGAGGTT+AGG | - | chr7.2:2849149-2849168 | None:intergenic | 45.0% | |
| ATAGTAACATCACCGGCGAT+TGG | - | chr7.2:2849089-2849108 | None:intergenic | 45.0% | |
| CGATTCCAAACGTCAACGTT+TGG | + | chr7.2:2848719-2848738 | MS.gene050505:CDS | 45.0% | |
| CGGGAGTGAAATTGAGGTTA+GGG | - | chr7.2:2849148-2849167 | None:intergenic | 45.0% | |
| CGTGAATCTTCAACCATAGG+TGG | - | chr7.2:2848765-2848784 | None:intergenic | 45.0% | |
| CTCGATTACACAACACAGAG+AGG | + | chr7.2:2848843-2848862 | MS.gene050505:CDS | 45.0% | |
| CTTCTGATAGAAACGGATCG+AGG | - | chr7.2:2849218-2849237 | None:intergenic | 45.0% | |
| CTTGCGAGAGATTTCAAACG+TGG | - | chr7.2:2849048-2849067 | None:intergenic | 45.0% | |
| GACGAGATGGAACTGTTACA+AGG | + | chr7.2:2848816-2848835 | MS.gene050505:CDS | 45.0% | |
| GATGAATTGCGTTCAGTTGG+TGG | + | chr7.2:2849746-2849765 | MS.gene050505:CDS | 45.0% | |
| GTGTGATTGAAGAGACAGTG+AGG | + | chr7.2:2849498-2849517 | MS.gene050505:CDS | 45.0% | |
| GTTGTGAGCAAAATGAGCTC+TGG | + | chr7.2:2848987-2849006 | MS.gene050505:CDS | 45.0% | |
| TCCCGTAATTCTCAAAAGCG+AGG | + | chr7.2:2849163-2849182 | MS.gene050505:CDS | 45.0% | |
| TTGAGGTTAGGGTTAGGACT+TGG | - | chr7.2:2849137-2849156 | None:intergenic | 45.0% | |
| ! | ACGTTTGGAATCGGTTGAGT+CGG | - | chr7.2:2848712-2848731 | None:intergenic | 45.0% |
| ! | CCGTTTAAGGAATTGATGGC+TGG | + | chr7.2:2849533-2849552 | MS.gene050505:CDS | 45.0% |
| ! | GAATTGATGGCTGGTGCAAT+GGG | + | chr7.2:2849542-2849561 | MS.gene050505:CDS | 45.0% |
| ! | GAGCAAAATGAGCTCTGGTA+AGG | + | chr7.2:2848992-2849011 | MS.gene050505:CDS | 45.0% |
| ! | TTCATCGTCTGAAACGGTAG+CGG | - | chr7.2:2849608-2849627 | None:intergenic | 45.0% |
| !! | GTTGCGGTTGGTGTTAGAAT+TGG | - | chr7.2:2848675-2848694 | None:intergenic | 45.0% |
| !! | TTTTGGAGGTGGAGAATTGG+TGG | + | chr7.2:2849634-2849653 | MS.gene050505:CDS | 45.0% |
| !!! | AGGTTTTGGAGGTGGAGAAT+TGG | + | chr7.2:2849631-2849650 | MS.gene050505:CDS | 45.0% |
| AAGATGATCGTGGTTGCGGT+TGG | - | chr7.2:2848687-2848706 | None:intergenic | 50.0% | |
| CAGTTCCATCTCGTCTTCGT+CGG | - | chr7.2:2848811-2848830 | None:intergenic | 50.0% | |
| GCGAGGTAAATTCAACCACG+CGG | + | chr7.2:2849180-2849199 | MS.gene050505:CDS | 50.0% | |
| GGAACGGAGATAGAAGCAGA+TGG | - | chr7.2:2848612-2848631 | None:intergenic | 50.0% | |
| ! | GGAATTGATGGCTGGTGCAA+TGG | + | chr7.2:2849541-2849560 | MS.gene050505:CDS | 50.0% |
| !! | GCGGTTGGTGTTAGAATTGG+AGG | - | chr7.2:2848672-2848691 | None:intergenic | 50.0% |
| AACAACGTAGCGCCAATCGC+CGG | + | chr7.2:2849074-2849093 | MS.gene050505:CDS | 55.0% | |
| ACTGCTGGGAATGGTGTAGC+TGG | + | chr7.2:2849476-2849495 | MS.gene050505:CDS | 55.0% | |
| AGCTCGTTGAGAAGATCCGC+AGG | + | chr7.2:2848943-2848962 | MS.gene050505:CDS | 55.0% | |
| ATGGACCGACGAAGACGAGA+TGG | + | chr7.2:2848803-2848822 | MS.gene050505:CDS | 55.0% | |
| GCAATGGGAGGAGGACTGTT+TGG | + | chr7.2:2849557-2849576 | MS.gene050505:CDS | 55.0% | |
| GGCGAAGATGATCGTGGTTG+CGG | - | chr7.2:2848691-2848710 | None:intergenic | 55.0% | |
| TGAGTCGGCGAAGATGATCG+TGG | - | chr7.2:2848697-2848716 | None:intergenic | 55.0% | |
| TGCGGATCTTCTCAACGAGC+TGG | - | chr7.2:2848944-2848963 | None:intergenic | 55.0% | |
| ! | TTGATGGCTGGTGCAATGGG+AGG | + | chr7.2:2849545-2849564 | MS.gene050505:CDS | 55.0% |
| ATGGCTGGTGCAATGGGAGG+AGG | + | chr7.2:2849548-2849567 | MS.gene050505:CDS | 60.0% | |
| GGAGGACTGTTTGGATCGCG+TGG | + | chr7.2:2849566-2849585 | MS.gene050505:CDS | 60.0% | |
| TCTGAGAGCTCCTCCGGGAA+CGG | - | chr7.2:2848649-2848668 | None:intergenic | 60.0% | |
| TGGAGGTCTGAGAGCTCCTC+CGG | - | chr7.2:2848655-2848674 | None:intergenic | 60.0% | |
| !! | CAACCACGCGGAAGCGTTCA+CGG | + | chr7.2:2849192-2849211 | MS.gene050505:CDS | 60.0% |
| GGAGGTCTGAGAGCTCCTCC+GGG | - | chr7.2:2848654-2848673 | None:intergenic | 65.0% | |
| AGCTCCTCCGGGAACGGCGA+CGG | - | chr7.2:2848643-2848662 | None:intergenic | 70.0% | |
| AGGCCGTGAACGCTTCCGCG+TGG | - | chr7.2:2849198-2849217 | None:intergenic | 70.0% | |
| TCCGGGAACGGCGACGGTGA+CGG | - | chr7.2:2848637-2848656 | None:intergenic | 70.0% | |
| TCCGTCACCGTCGCCGTTCC+CGG | + | chr7.2:2848633-2848652 | MS.gene050505:CDS | 70.0% | |
| !! | GGAACGGCGACGGTGACGGA+GGG | - | chr7.2:2848633-2848652 | None:intergenic | 70.0% |
| !! | GGCGACGGTGACGGAGGGAA+CGG | - | chr7.2:2848628-2848647 | None:intergenic | 70.0% |
| GTCACCGTCGCCGTTCCCGG+AGG | + | chr7.2:2848636-2848655 | MS.gene050505:CDS | 75.0% | |
| ! | GGGAACGGCGACGGTGACGG+AGG | - | chr7.2:2848634-2848653 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 2848477 | 2849784 | 2848477 | ID=MS.gene050505 |
| chr7.2 | mRNA | 2848477 | 2849784 | 2848477 | ID=MS.gene050505.t1;Parent=MS.gene050505 |
| chr7.2 | exon | 2848477 | 2849784 | 2848477 | ID=MS.gene050505.t1.exon1;Parent=MS.gene050505.t1 |
| chr7.2 | CDS | 2848477 | 2849784 | 2848477 | ID=cds.MS.gene050505.t1;Parent=MS.gene050505.t1 |
| Gene Sequence |
| Protein sequence |
