AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08911

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08911.t1 MTR_8g079990 97.538 325 8 0 1 325 344 668 0.0 646
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08911.t1 AT1G67680 67.559 299 89 2 1 299 358 648 8.60e-121 362
MS.gene08911.t1 AT1G67650 59.866 299 111 2 1 299 345 634 2.48e-120 360

Find 103 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTGGGAAGCCACCTTTC+TGG 0.144780 4.4:-16658615 None:intergenic
GGTGGAGGACCTGGGTTTGC+AGG 0.208255 4.4:-16658588 None:intergenic
GAAGTTGCCTGGTTTGATTT+TGG 0.230604 4.4:-16658756 None:intergenic
TCTGGATCTGGTGGAGGACC+TGG 0.280134 4.4:-16658597 None:intergenic
GACAGCTTGGAGCGTACTTC+TGG 0.283282 4.4:+16658444 MS.gene08911:CDS
AGCTCGTTTGTCCTTCCTCT+TGG 0.312324 4.4:-16658658 None:intergenic
GCTCAGGTTGCGGCGGCGGC+TGG 0.317288 4.4:+16658033 MS.gene08911:CDS
TGCCCGTCTTGATGTTATTA+AGG 0.317488 4.4:+16658365 MS.gene08911:CDS
CTTTCCTTCGTCGTTCGTTT+CGG 0.317730 4.4:-16658505 None:intergenic
GGAAGCCACCTTTCTGGATC+TGG 0.323233 4.4:-16658609 None:intergenic
CCCAGGTTCTTTACTTAGCC+AGG 0.341545 4.4:+16658010 MS.gene08911:CDS
CAGGGCTCAGGTTGCGGCGG+CGG 0.362726 4.4:+16658029 MS.gene08911:CDS
GCCGGCATATGTTGAATATC+TGG 0.373744 4.4:-16658093 None:intergenic
GAAATACTGGCACAGTTTGC+TGG 0.375065 4.4:+16657970 MS.gene08911:CDS
TTTGCAGGGTTAAACCCTTT+AGG 0.386343 4.4:-16658573 None:intergenic
AATACTGGTACAACACTATC+AGG 0.392818 4.4:-16657898 None:intergenic
CTTAGCCAGGGCTCAGGTTG+CGG 0.398955 4.4:+16658023 MS.gene08911:CDS
AGGGCAGCTTGCAGCAATAC+TGG 0.399705 4.4:-16657913 None:intergenic
CTGGATCTGGTGGAGGACCT+GGG 0.400436 4.4:-16658596 None:intergenic
GCTCGTTTGTCCTTCCTCTT+GGG 0.405630 4.4:-16658657 None:intergenic
AAAGACCTTGCCTGGATTGA+AGG 0.409184 4.4:+16658410 MS.gene08911:CDS
CCTAGACTTCTTTCTAGACT+TGG 0.410339 4.4:-16658841 None:intergenic
AAACGAGCTGCTCAAGTTAG+AGG 0.410977 4.4:+16658672 MS.gene08911:CDS
CGCCGCCGCAACCTGAGCCC+TGG 0.424323 4.4:-16658028 None:intergenic
TGCACTCTGAGTAGCACCTT+TGG 0.425319 4.4:-16658781 None:intergenic
TGGAAGGGCTGAGGAAATAC+TGG 0.426397 4.4:+16657957 MS.gene08911:CDS
ATTGCTGCAAGCTGCCCTCT+TGG 0.433939 4.4:+16657918 MS.gene08911:CDS
TGAGGAGCTCGTTAAAAGTC+AGG 0.440388 4.4:+16658305 MS.gene08911:CDS
CACCTTTGGAGGAAGTTGCC+TGG 0.447513 4.4:-16658767 None:intergenic
TGGTATCTTTGTTAGAGAAT+CGG 0.447976 4.4:-16658073 None:intergenic
TGCTGTAGTTAGAGATAAGC+AGG 0.456566 4.4:+16658704 MS.gene08911:CDS
AGGCTGCCTCATTCAAGTTA+AGG 0.458642 4.4:+16658250 MS.gene08911:CDS
GTGGAGGACCTGGGTTTGCA+GGG 0.460700 4.4:-16658587 None:intergenic
TCTAGACTTGGATGAAGGCT+TGG 0.461224 4.4:-16658829 None:intergenic
AAAAGTTGACCTCTCTCGCT+TGG 0.466137 4.4:-16658631 None:intergenic
TTCTTTCTAGACTTGGATGA+AGG 0.466315 4.4:-16658834 None:intergenic
AAGAAACTAAAGACCTTGCC+TGG 0.467453 4.4:+16658402 MS.gene08911:CDS
TTGGATGAAGGCTTGGATGA+AGG 0.468551 4.4:-16658822 None:intergenic
TGCTCAAGTTAGAGGCTCAC+AGG 0.477514 4.4:+16658680 MS.gene08911:CDS
GAAAGCCAAGGTATCCTAAA+GGG 0.478236 4.4:+16658559 MS.gene08911:CDS
TAAAGAACCTGGGACTTCTC+AGG 0.480535 4.4:-16658000 None:intergenic
GAAGCATAGAAGCGCTAGTT+GGG 0.486962 4.4:+16658328 MS.gene08911:CDS
TCTTTACTTAGCCAGGGCTC+AGG 0.490874 4.4:+16658017 MS.gene08911:CDS
AAAGTTGACCTCTCTCGCTT+GGG 0.493251 4.4:-16658630 None:intergenic
AGCCACCTTTCTGGATCTGG+TGG 0.495160 4.4:-16658606 None:intergenic
TCTGGAGTTAAACAAGTTGA+GGG 0.499079 4.4:+16658462 MS.gene08911:CDS
TGAAGGCTTGGATGAAGGCT+TGG 0.502378 4.4:-16658817 None:intergenic
TTCTGGAGTTAAACAAGTTG+AGG 0.502597 4.4:+16658461 MS.gene08911:CDS
CCAAGTCTAGAAAGAAGTCT+AGG 0.505506 4.4:+16658841 MS.gene08911:CDS
TTAAACCCTTTAGGATACCT+TGG 0.508195 4.4:-16658564 None:intergenic
CACCTTTCTGGATCTGGTGG+AGG 0.508999 4.4:-16658603 None:intergenic
GGGAATTGATGTGGACAGCT+TGG 0.519634 4.4:+16658431 MS.gene08911:CDS
CCAGGTTCTTTACTTAGCCA+GGG 0.523348 4.4:+16658011 MS.gene08911:CDS
GGAAGCATAGAAGCGCTAGT+TGG 0.523436 4.4:+16658327 MS.gene08911:CDS
ACAAGGGTGGCAACAGTAGC+CGG 0.524474 4.4:-16658111 None:intergenic
AGCTGCACCCTCAACGTCGT+TGG 0.527024 4.4:-16658151 None:intergenic
GAACGAGCCAACGACGTTGA+GGG 0.529678 4.4:+16658144 MS.gene08911:CDS
AGAGAATCGGCTGCAATATG+TGG 0.533632 4.4:-16658060 None:intergenic
ACCAGATATTCAACATATGC+CGG 0.534672 4.4:+16658092 MS.gene08911:CDS
AGAAAGCCAAGGTATCCTAA+AGG 0.536400 4.4:+16658558 MS.gene08911:CDS
ACATCAATTCCCTTCAATCC+AGG 0.536875 4.4:-16658420 None:intergenic
TCCATGCCTTAACTTGAATG+AGG 0.536971 4.4:-16658256 None:intergenic
GTTAGAGATAAGCAGGAAGC+TGG 0.537836 4.4:+16658711 MS.gene08911:CDS
TTGGTTAGAGAGAACAAAGC+TGG 0.538133 4.4:+16657937 MS.gene08911:CDS
CATTCAAGTTAAGGCATGGA+AGG 0.544217 4.4:+16658259 MS.gene08911:CDS
CCCTGGCTAAGTAAAGAACC+TGG 0.544789 4.4:-16658011 None:intergenic
GCATGCTGCTAAACTCTATG+AGG 0.544889 4.4:+16658287 MS.gene08911:CDS
AGAACGAGCCAACGACGTTG+AGG 0.546494 4.4:+16658143 MS.gene08911:CDS
GCCTCATTCAAGTTAAGGCA+TGG 0.556079 4.4:+16658255 MS.gene08911:CDS
AAGACCTTGCCTGGATTGAA+GGG 0.556211 4.4:+16658411 MS.gene08911:CDS
ACTCTGAGTAGCACCTTTGG+AGG 0.562248 4.4:-16658778 None:intergenic
GAACAAAGCTGGAAGGGCTG+AGG 0.564078 4.4:+16657948 MS.gene08911:CDS
TGCCTTAATAACATCAAGAC+GGG 0.570587 4.4:-16658367 None:intergenic
GTTGAGGGTCCTCTTCATGC+AGG 0.576924 4.4:+16658477 MS.gene08911:CDS
GTCCTCCACCAGATCCAGAA+AGG 0.583333 4.4:+16658601 MS.gene08911:CDS
GCTTAATATTATAATGCAAG+AGG 0.584885 4.4:+16658230 MS.gene08911:CDS
GGTGGCTTCCCAAGCGAGAG+AGG 0.586065 4.4:+16658622 MS.gene08911:CDS
TAGAGAGAACAAAGCTGGAA+GGG 0.591318 4.4:+16657942 MS.gene08911:CDS
TTGATTCTGCAACCAAGTGG+TGG 0.591734 4.4:+16658181 MS.gene08911:CDS
AAAGTTGCCTGAGAAGTCCC+AGG 0.599008 4.4:+16657993 MS.gene08911:CDS
AGCCAGGGCTCAGGTTGCGG+CGG 0.605720 4.4:+16658026 MS.gene08911:CDS
GGGTTTAACCCTGCAAACCC+AGG 0.606815 4.4:+16658579 MS.gene08911:CDS
AACCAGGCAACTTCCTCCAA+AGG 0.608012 4.4:+16658765 MS.gene08911:CDS
TTAGAGAGAACAAAGCTGGA+AGG 0.608924 4.4:+16657941 MS.gene08911:CDS
CTGCCTTAATAACATCAAGA+CGG 0.615547 4.4:-16658368 None:intergenic
GAGAATCGGCTGCAATATGT+GGG 0.621190 4.4:-16658059 None:intergenic
CATAGCATTAGACCACCACT+TGG 0.621895 4.4:-16658193 None:intergenic
TCGGCAACACCTGCATGAAG+AGG 0.622400 4.4:-16658486 None:intergenic
AAAAGAGAAAGAGAAAGCCA+AGG 0.626179 4.4:+16658547 MS.gene08911:CDS
TTTGTTCTCTCTAACCAAGA+GGG 0.627104 4.4:-16657932 None:intergenic
TGCTTGATTCTGCAACCAAG+TGG 0.627939 4.4:+16658178 MS.gene08911:CDS
TTCCAATCCAAAATCAAACC+AGG 0.634307 4.4:+16658749 MS.gene08911:CDS
TGGATTGAAGGGAATTGATG+TGG 0.636123 4.4:+16658422 MS.gene08911:CDS
ATTCAAGTTAAGGCATGGAA+GGG 0.638452 4.4:+16658260 MS.gene08911:CDS
GCTCAAGTTAGAGGCTCACA+GGG 0.642165 4.4:+16658681 MS.gene08911:CDS
GAGGAGCTCGTTAAAAGTCA+GGG 0.645289 4.4:+16658306 MS.gene08911:CDS
CCTGGCTAAGTAAAGAACCT+GGG 0.646230 4.4:-16658010 None:intergenic
AATTCCCTTCAATCCAGGCA+AGG 0.648744 4.4:-16658415 None:intergenic
CTCCACCAGATCCAGAAAGG+TGG 0.653977 4.4:+16658604 MS.gene08911:CDS
CTTTGTTCTCTCTAACCAAG+AGG 0.654169 4.4:-16657933 None:intergenic
GTGGTCTAATGCTATGACTG+AGG 0.668030 4.4:+16658200 MS.gene08911:CDS
AATCGGCTGCAATATGTGGG+TGG 0.683879 4.4:-16658056 None:intergenic
GTTGCCGAAACGAACGACGA+AGG 0.686534 4.4:+16658501 MS.gene08911:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GCTTAATATTATAATGCAAG+AGG + chr4.4:16658230-16658249 MS.gene08911:CDS 25.0%
TGGTATCTTTGTTAGAGAAT+CGG - chr4.4:16658076-16658095 None:intergenic 30.0%
!! TCGTTCTTTTAAAGACACAA+GGG - chr4.4:16658130-16658149 None:intergenic 30.0%
AAAAGAGAAAGAGAAAGCCA+AGG + chr4.4:16658547-16658566 MS.gene08911:CDS 35.0%
AATACTGGTACAACACTATC+AGG - chr4.4:16657901-16657920 None:intergenic 35.0%
ACCAGATATTCAACATATGC+CGG + chr4.4:16658092-16658111 MS.gene08911:CDS 35.0%
CTGCCTTAATAACATCAAGA+CGG - chr4.4:16658371-16658390 None:intergenic 35.0%
TGCCTTAATAACATCAAGAC+GGG - chr4.4:16658370-16658389 None:intergenic 35.0%
TTCCAATCCAAAATCAAACC+AGG + chr4.4:16658749-16658768 MS.gene08911:CDS 35.0%
TTCTTTCTAGACTTGGATGA+AGG - chr4.4:16658837-16658856 None:intergenic 35.0%
TTTGTTCTCTCTAACCAAGA+GGG - chr4.4:16657935-16657954 None:intergenic 35.0%
! ATTCAAGTTAAGGCATGGAA+GGG + chr4.4:16658260-16658279 MS.gene08911:CDS 35.0%
! TCTGGAGTTAAACAAGTTGA+GGG + chr4.4:16658462-16658481 MS.gene08911:CDS 35.0%
!! CTCGTTCTTTTAAAGACACA+AGG - chr4.4:16658131-16658150 None:intergenic 35.0%
!! TGATTTTGGATTGGAATGAC+TGG - chr4.4:16658745-16658764 None:intergenic 35.0%
!! TTAAACCCTTTAGGATACCT+TGG - chr4.4:16658567-16658586 None:intergenic 35.0%
!! TTCTGGAGTTAAACAAGTTG+AGG + chr4.4:16658461-16658480 MS.gene08911:CDS 35.0%
!! TTCTTTTAAAGACACAAGGG+TGG - chr4.4:16658127-16658146 None:intergenic 35.0%
AAGAAACTAAAGACCTTGCC+TGG + chr4.4:16658402-16658421 MS.gene08911:CDS 40.0%
ACATCAATTCCCTTCAATCC+AGG - chr4.4:16658423-16658442 None:intergenic 40.0%
CCAAGTCTAGAAAGAAGTCT+AGG + chr4.4:16658841-16658860 MS.gene08911:CDS 40.0%
CCTAGACTTCTTTCTAGACT+TGG - chr4.4:16658844-16658863 None:intergenic 40.0%
CTTTGTTCTCTCTAACCAAG+AGG - chr4.4:16657936-16657955 None:intergenic 40.0%
TAGAGAGAACAAAGCTGGAA+GGG + chr4.4:16657942-16657961 MS.gene08911:CDS 40.0%
TGCCCGTCTTGATGTTATTA+AGG + chr4.4:16658365-16658384 MS.gene08911:CDS 40.0%
TGCTGTAGTTAGAGATAAGC+AGG + chr4.4:16658704-16658723 MS.gene08911:CDS 40.0%
TGGATTGAAGGGAATTGATG+TGG + chr4.4:16658422-16658441 MS.gene08911:CDS 40.0%
TTAGAGAGAACAAAGCTGGA+AGG + chr4.4:16657941-16657960 MS.gene08911:CDS 40.0%
TTGGTTAGAGAGAACAAAGC+TGG + chr4.4:16657937-16657956 MS.gene08911:CDS 40.0%
TTTGCAGGGTTAAACCCTTT+AGG - chr4.4:16658576-16658595 None:intergenic 40.0%
! AGAAAGCCAAGGTATCCTAA+AGG + chr4.4:16658558-16658577 MS.gene08911:CDS 40.0%
! CATTCAAGTTAAGGCATGGA+AGG + chr4.4:16658259-16658278 MS.gene08911:CDS 40.0%
! GAAAGCCAAGGTATCCTAAA+GGG + chr4.4:16658559-16658578 MS.gene08911:CDS 40.0%
! TCCATGCCTTAACTTGAATG+AGG - chr4.4:16658259-16658278 None:intergenic 40.0%
!! GAAGTTGCCTGGTTTGATTT+TGG - chr4.4:16658759-16658778 None:intergenic 40.0%
!! TGCCTGGTTTGATTTTGGAT+TGG - chr4.4:16658754-16658773 None:intergenic 40.0%
AAAAGTTGACCTCTCTCGCT+TGG - chr4.4:16658634-16658653 None:intergenic 45.0%
AAACGAGCTGCTCAAGTTAG+AGG + chr4.4:16658672-16658691 MS.gene08911:CDS 45.0%
AAAGACCTTGCCTGGATTGA+AGG + chr4.4:16658410-16658429 MS.gene08911:CDS 45.0%
AAAGTTGACCTCTCTCGCTT+GGG - chr4.4:16658633-16658652 None:intergenic 45.0%
AAGACCTTGCCTGGATTGAA+GGG + chr4.4:16658411-16658430 MS.gene08911:CDS 45.0%
AATTCCCTTCAATCCAGGCA+AGG - chr4.4:16658418-16658437 None:intergenic 45.0%
AGAGAATCGGCTGCAATATG+TGG - chr4.4:16658063-16658082 None:intergenic 45.0%
CATAGCATTAGACCACCACT+TGG - chr4.4:16658196-16658215 None:intergenic 45.0%
CCAGGTTCTTTACTTAGCCA+GGG + chr4.4:16658011-16658030 MS.gene08911:CDS 45.0%
CCTGGCTAAGTAAAGAACCT+GGG - chr4.4:16658013-16658032 None:intergenic 45.0%
CTTTCCTTCGTCGTTCGTTT+CGG - chr4.4:16658508-16658527 None:intergenic 45.0%
GAAATACTGGCACAGTTTGC+TGG + chr4.4:16657970-16657989 MS.gene08911:CDS 45.0%
GAGAATCGGCTGCAATATGT+GGG - chr4.4:16658062-16658081 None:intergenic 45.0%
GAGGAGCTCGTTAAAAGTCA+GGG + chr4.4:16658306-16658325 MS.gene08911:CDS 45.0%
GCATGCTGCTAAACTCTATG+AGG + chr4.4:16658287-16658306 MS.gene08911:CDS 45.0%
GCCGGCATATGTTGAATATC+TGG - chr4.4:16658096-16658115 None:intergenic 45.0%
GTGGTCTAATGCTATGACTG+AGG + chr4.4:16658200-16658219 MS.gene08911:CDS 45.0%
GTTAGAGATAAGCAGGAAGC+TGG + chr4.4:16658711-16658730 MS.gene08911:CDS 45.0%
TAAAGAACCTGGGACTTCTC+AGG - chr4.4:16658003-16658022 None:intergenic 45.0%
TCTAGACTTGGATGAAGGCT+TGG - chr4.4:16658832-16658851 None:intergenic 45.0%
TGAGGAGCTCGTTAAAAGTC+AGG + chr4.4:16658305-16658324 MS.gene08911:CDS 45.0%
TGCTTGATTCTGCAACCAAG+TGG + chr4.4:16658178-16658197 MS.gene08911:CDS 45.0%
TTGATTCTGCAACCAAGTGG+TGG + chr4.4:16658181-16658200 MS.gene08911:CDS 45.0%
TTGGATGAAGGCTTGGATGA+AGG - chr4.4:16658825-16658844 None:intergenic 45.0%
! AACTTTTAGGCCCAAGAGGA+AGG + chr4.4:16658647-16658666 MS.gene08911:CDS 45.0%
! AGCGAGAGAGGTCAACTTTT+AGG + chr4.4:16658634-16658653 MS.gene08911:CDS 45.0%
! AGGCTGCCTCATTCAAGTTA+AGG + chr4.4:16658250-16658269 MS.gene08911:CDS 45.0%
! GCCTCATTCAAGTTAAGGCA+TGG + chr4.4:16658255-16658274 MS.gene08911:CDS 45.0%
!! GAAGCATAGAAGCGCTAGTT+GGG + chr4.4:16658328-16658347 MS.gene08911:CDS 45.0%
AAAGTTGCCTGAGAAGTCCC+AGG + chr4.4:16657993-16658012 MS.gene08911:CDS 50.0%
AACCAGGCAACTTCCTCCAA+AGG + chr4.4:16658765-16658784 MS.gene08911:CDS 50.0%
AATCGGCTGCAATATGTGGG+TGG - chr4.4:16658059-16658078 None:intergenic 50.0%
ACTCTGAGTAGCACCTTTGG+AGG - chr4.4:16658781-16658800 None:intergenic 50.0%
AGCTCGTTTGTCCTTCCTCT+TGG - chr4.4:16658661-16658680 None:intergenic 50.0%
CCCAGGTTCTTTACTTAGCC+AGG + chr4.4:16658010-16658029 MS.gene08911:CDS 50.0%
CCCTGGCTAAGTAAAGAACC+TGG - chr4.4:16658014-16658033 None:intergenic 50.0%
GCTCAAGTTAGAGGCTCACA+GGG + chr4.4:16658681-16658700 MS.gene08911:CDS 50.0%
GCTCGTTTGTCCTTCCTCTT+GGG - chr4.4:16658660-16658679 None:intergenic 50.0%
GGGAATTGATGTGGACAGCT+TGG + chr4.4:16658431-16658450 MS.gene08911:CDS 50.0%
TCTTTACTTAGCCAGGGCTC+AGG + chr4.4:16658017-16658036 MS.gene08911:CDS 50.0%
TGAAGGCTTGGATGAAGGCT+TGG - chr4.4:16658820-16658839 None:intergenic 50.0%
TGCACTCTGAGTAGCACCTT+TGG - chr4.4:16658784-16658803 None:intergenic 50.0%
TGCTCAAGTTAGAGGCTCAC+AGG + chr4.4:16658680-16658699 MS.gene08911:CDS 50.0%
TGGAAGGGCTGAGGAAATAC+TGG + chr4.4:16657957-16657976 MS.gene08911:CDS 50.0%
! GGTCAACTTTTAGGCCCAAG+AGG + chr4.4:16658643-16658662 MS.gene08911:CDS 50.0%
!! GGAAGCATAGAAGCGCTAGT+TGG + chr4.4:16658327-16658346 MS.gene08911:CDS 50.0%
ACAAGGGTGGCAACAGTAGC+CGG - chr4.4:16658114-16658133 None:intergenic 55.0%
AGAACGAGCCAACGACGTTG+AGG + chr4.4:16658143-16658162 MS.gene08911:CDS 55.0%
AGCCACCTTTCTGGATCTGG+TGG - chr4.4:16658609-16658628 None:intergenic 55.0%
AGGGCAGCTTGCAGCAATAC+TGG - chr4.4:16657916-16657935 None:intergenic 55.0%
ATTGCTGCAAGCTGCCCTCT+TGG + chr4.4:16657918-16657937 MS.gene08911:CDS 55.0%
CACCTTTCTGGATCTGGTGG+AGG - chr4.4:16658606-16658625 None:intergenic 55.0%
CTCCACCAGATCCAGAAAGG+TGG + chr4.4:16658604-16658623 MS.gene08911:CDS 55.0%
GAACAAAGCTGGAAGGGCTG+AGG + chr4.4:16657948-16657967 MS.gene08911:CDS 55.0%
GAACGAGCCAACGACGTTGA+GGG + chr4.4:16658144-16658163 MS.gene08911:CDS 55.0%
GACAGCTTGGAGCGTACTTC+TGG + chr4.4:16658444-16658463 MS.gene08911:CDS 55.0%
GGAAGCCACCTTTCTGGATC+TGG - chr4.4:16658612-16658631 None:intergenic 55.0%
GGGTTTAACCCTGCAAACCC+AGG + chr4.4:16658579-16658598 MS.gene08911:CDS 55.0%
GTCCTCCACCAGATCCAGAA+AGG + chr4.4:16658601-16658620 MS.gene08911:CDS 55.0%
GTTGAGGGTCCTCTTCATGC+AGG + chr4.4:16658477-16658496 MS.gene08911:CDS 55.0%
GTTGCCGAAACGAACGACGA+AGG + chr4.4:16658501-16658520 MS.gene08911:CDS 55.0%
TCGGCAACACCTGCATGAAG+AGG - chr4.4:16658489-16658508 None:intergenic 55.0%
! CACCTTTGGAGGAAGTTGCC+TGG - chr4.4:16658770-16658789 None:intergenic 55.0%
AGCTGCACCCTCAACGTCGT+TGG - chr4.4:16658154-16658173 None:intergenic 60.0%
CGCTTGGGAAGCCACCTTTC+TGG - chr4.4:16658618-16658637 None:intergenic 60.0%
CTGGATCTGGTGGAGGACCT+GGG - chr4.4:16658599-16658618 None:intergenic 60.0%
GTGGAGGACCTGGGTTTGCA+GGG - chr4.4:16658590-16658609 None:intergenic 60.0%
TCTGGATCTGGTGGAGGACC+TGG - chr4.4:16658600-16658619 None:intergenic 60.0%
! CTTAGCCAGGGCTCAGGTTG+CGG + chr4.4:16658023-16658042 MS.gene08911:CDS 60.0%
GGTGGAGGACCTGGGTTTGC+AGG - chr4.4:16658591-16658610 None:intergenic 65.0%
GGTGGCTTCCCAAGCGAGAG+AGG + chr4.4:16658622-16658641 MS.gene08911:CDS 65.0%
! AGCCAGGGCTCAGGTTGCGG+CGG + chr4.4:16658026-16658045 MS.gene08911:CDS 70.0%
! CAGGGCTCAGGTTGCGGCGG+CGG + chr4.4:16658029-16658048 MS.gene08911:CDS 75.0%
! CGCCGCCGCAACCTGAGCCC+TGG - chr4.4:16658031-16658050 None:intergenic 80.0%
!! GCTCAGGTTGCGGCGGCGGC+TGG + chr4.4:16658033-16658052 MS.gene08911:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 16657892 16658869 16657892 ID=MS.gene08911
chr4.4 mRNA 16657892 16658869 16657892 ID=MS.gene08911.t1;Parent=MS.gene08911
chr4.4 exon 16657892 16658869 16657892 ID=MS.gene08911.t1.exon1;Parent=MS.gene08911.t1
chr4.4 CDS 16657892 16658869 16657892 ID=cds.MS.gene08911.t1;Parent=MS.gene08911.t1
Gene Sequence

>MS.gene08911

ATGTTTCCTGATAGTGTTGTACCAGTATTGCTGCAAGCTGCCCTCTTGGTTAGAGAGAACAAAGCTGGAAGGGCTGAGGAAATACTGGCACAGTTTGCTGGAAAGTTGCCTGAGAAGTCCCAGGTTCTTTACTTAGCCAGGGCTCAGGTTGCGGCGGCGGCTGGCCACCCACATATTGCAGCCGATTCTCTAACAAAGATACCAGATATTCAACATATGCCGGCTACTGTTGCCACCCTTGTGTCTTTAAAAGAACGAGCCAACGACGTTGAGGGTGCAGCTGCTGTGCTTGATTCTGCAACCAAGTGGTGGTCTAATGCTATGACTGAGGACAATAAGCTTAATATTATAATGCAAGAGGCTGCCTCATTCAAGTTAAGGCATGGAAGGGAAGAGCATGCTGCTAAACTCTATGAGGAGCTCGTTAAAAGTCAGGGAAGCATAGAAGCGCTAGTTGGGCTGATAACAACAGTTGCCCGTCTTGATGTTATTAAGGCAGAGCTATATGAAAAGAAACTAAAGACCTTGCCTGGATTGAAGGGAATTGATGTGGACAGCTTGGAGCGTACTTCTGGAGTTAAACAAGTTGAGGGTCCTCTTCATGCAGGTGTTGCCGAAACGAACGACGAAGGAAAGAATAAGACAAAAACTAAGAAAAAGAGAAAGAGAAAGCCAAGGTATCCTAAAGGGTTTAACCCTGCAAACCCAGGTCCTCCACCAGATCCAGAAAGGTGGCTTCCCAAGCGAGAGAGGTCAACTTTTAGGCCCAAGAGGAAGGACAAACGAGCTGCTCAAGTTAGAGGCTCACAGGGTGCTGTAGTTAGAGATAAGCAGGAAGCTGGTGCTTCTTCCAGTCATTCCAATCCAAAATCAAACCAGGCAACTTCCTCCAAAGGTGCTACTCAGAGTGCAGTTTCTGAGCAAACCAAGCCTTCATCCAAGCCTTCATCCAAGTCTAGAAAGAAGTCTAGGAAGTAA
Protein sequence

>MS.gene08911.t1

MFPDSVVPVLLQAALLVRENKAGRAEEILAQFAGKLPEKSQVLYLARAQVAAAAGHPHIAADSLTKIPDIQHMPATVATLVSLKERANDVEGAAAVLDSATKWWSNAMTEDNKLNIIMQEAASFKLRHGREEHAAKLYEELVKSQGSIEALVGLITTVARLDVIKAELYEKKLKTLPGLKGIDVDSLERTSGVKQVEGPLHAGVAETNDEGKNKTKTKKKRKRKPRYPKGFNPANPGPPPDPERWLPKRERSTFRPKRKDKRAAQVRGSQGAVVRDKQEAGASSSHSNPKSNQATSSKGATQSAVSEQTKPSSKPSSKSRKKSRK