Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057092.t1 | XP_003617397.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 6.10E-98 | 366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057092.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 6.9e-90 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057092.t1 | B7FJC3 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 4.4e-98 | 366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050290 | MS.gene057092 | 0.81986 | 9.30E-53 | -1.69E-46 |
| MS.gene050791 | MS.gene057092 | 0.841591 | 4.33E-58 | -1.69E-46 |
| MS.gene052412 | MS.gene057092 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene057092 | 0.818377 | 2.02E-52 | -1.69E-46 |
| MS.gene056917 | MS.gene057092 | 0.851322 | 9.57E-61 | -1.69E-46 |
| MS.gene057052 | MS.gene057092 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene057235 | 0.834204 | 3.43E-56 | -1.69E-46 |
| MS.gene057092 | MS.gene057272 | 0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene060856 | 0.808743 | 2.67E-50 | -1.69E-46 |
| MS.gene057092 | MS.gene065715 | 0.816061 | 6.71E-52 | -1.69E-46 |
| MS.gene057092 | MS.gene06581 | 0.815165 | 1.06E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene06803 | 0.845039 | 5.21E-59 | -1.69E-46 |
| MS.gene057092 | MS.gene07018 | 0.814738 | 1.32E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene072589 | 0.838637 | 2.55E-57 | -1.69E-46 |
| MS.gene057092 | MS.gene072591 | 0.838589 | 2.63E-57 | -1.69E-46 |
| MS.gene057092 | MS.gene073078 | 0.81439 | 1.58E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene08911 | 0.803317 | 3.69E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene20153 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene21636 | 0.820658 | 6.10E-53 | -1.69E-46 |
| MS.gene057092 | MS.gene22784 | 0.852929 | 3.34E-61 | -1.69E-46 |
| MS.gene057092 | MS.gene23437 | 0.84638 | 2.25E-59 | -1.69E-46 |
| MS.gene057092 | MS.gene24706 | 0.818012 | 2.45E-52 | -1.69E-46 |
| MS.gene057092 | MS.gene31177 | 0.803094 | 4.11E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene31991 | 0.836825 | 7.46E-57 | -1.69E-46 |
| MS.gene057092 | MS.gene34372 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene057092 | MS.gene36490 | 0.817238 | 3.66E-52 | -1.69E-46 |
| MS.gene057092 | MS.gene38222 | 0.825352 | 4.91E-54 | -1.69E-46 |
| MS.gene057092 | MS.gene39764 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene40831 | 0.855001 | 8.45E-62 | -1.69E-46 |
| MS.gene057092 | MS.gene40834 | 0.833798 | 4.34E-56 | -1.69E-46 |
| MS.gene057092 | MS.gene43070 | 0.819152 | 1.35E-52 | -1.69E-46 |
| MS.gene057092 | MS.gene43071 | 0.801468 | 8.88E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene45470 | 0.804224 | 2.39E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene46387 | 0.828368 | 9.35E-55 | -1.69E-46 |
| MS.gene057092 | MS.gene48048 | 0.90474 | 8.95E-80 | -1.69E-46 |
| MS.gene057092 | MS.gene50640 | 0.824704 | 6.99E-54 | -1.69E-46 |
| MS.gene057092 | MS.gene55890 | 0.826986 | 2.01E-54 | -1.69E-46 |
| MS.gene057092 | MS.gene57391 | 0.813992 | 1.93E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene63450 | 0.800037 | 1.74E-48 | -1.69E-46 |
| MS.gene057092 | MS.gene70215 | 0.810992 | 8.75E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene70805 | 0.813644 | 2.31E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene72382 | 0.821147 | 4.71E-53 | -1.69E-46 |
| MS.gene057092 | MS.gene77282 | 0.804986 | 1.66E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene81099 | 0.835448 | 1.67E-56 | -1.69E-46 |
| MS.gene057092 | MS.gene81244 | 0.812516 | 4.08E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene82038 | 0.841591 | 4.33E-58 | -1.69E-46 |
| MS.gene057092 | MS.gene82545 | 0.84133 | 5.07E-58 | -1.69E-46 |
| MS.gene057092 | MS.gene87309 | 0.808394 | 3.17E-50 | -1.69E-46 |
| MS.gene057092 | MS.gene88892 | 0.830346 | 3.09E-55 | -1.69E-46 |
| MS.gene057092 | MS.gene89977 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene90723 | 0.812627 | 3.86E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene90754 | 0.811081 | 8.37E-51 | -1.69E-46 |
| MS.gene057092 | MS.gene91826 | 0.826307 | 2.91E-54 | -1.69E-46 |
| MS.gene057092 | MS.gene99709 | 0.82354 | 1.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023381 | MS.gene057092 | PPI |
| MS.gene017078 | MS.gene057092 | PPI |
| MS.gene29778 | MS.gene057092 | PPI |
| MS.gene057092 | MS.gene78387 | PPI |
| MS.gene69509 | MS.gene057092 | PPI |
| MS.gene038298 | MS.gene057092 | PPI |
| MS.gene09188 | MS.gene057092 | PPI |
| MS.gene45549 | MS.gene057092 | PPI |
| MS.gene052057 | MS.gene057092 | PPI |
| MS.gene09187 | MS.gene057092 | PPI |
| MS.gene038296 | MS.gene057092 | PPI |
| MS.gene48046 | MS.gene057092 | PPI |
| MS.gene057092 | MS.gene92155 | PPI |
| MS.gene057092 | MS.gene09046 | PPI |
| MS.gene039012 | MS.gene057092 | PPI |
| MS.gene057092 | MS.gene31095 | PPI |
| MS.gene057092 | MS.gene052057 | PPI |
| MS.gene057092 | MS.gene22178 | PPI |
| MS.gene019193 | MS.gene057092 | PPI |
| MS.gene22178 | MS.gene057092 | PPI |
| MS.gene08260 | MS.gene057092 | PPI |
| MS.gene057092 | MS.gene48048 | PPI |
| MS.gene77617 | MS.gene057092 | PPI |
| MS.gene057092 | MS.gene08259 | PPI |
| MS.gene057092 | MS.gene073967 | PPI |
| MS.gene017080 | MS.gene057092 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057092.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene057092.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene057092.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene057092.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene057092.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 5 | 178 | 3 | 176 | 3.08e-124 | 347 |
| MS.gene057092.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 92 | 176 | 1 | 85 | 1.04e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057092.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 5 | 178 | 2.89e-119 | 335 |
| MS.gene057092.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 44 | 217 | 3.11e-119 | 336 |
| MS.gene057092.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 1.19e-117 | 330 |
| MS.gene057092.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 4.03e-117 | 329 |
| MS.gene057092.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 6 | 178 | 140 | 312 | 1.03e-114 | 328 |
Find 50 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGAGGGAACTTGATTT+TGG | 0.187302 | 5.3:-73238588 | None:intergenic |
| AACAGAGACTTACCAGAATT+TGG | 0.195659 | 5.3:-73236985 | None:intergenic |
| CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 5.3:-73238660 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 5.3:+73238366 | MS.gene057092:CDS |
| GAAAAGCAATGGACAAGTTT+TGG | 0.246012 | 5.3:+73237140 | MS.gene057092:CDS |
| GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 5.3:-73238651 | None:intergenic |
| ACGAAATGGCATCTCGTCAT+AGG | 0.320455 | 5.3:+73238477 | MS.gene057092:CDS |
| AGATTTATCGTATGAAGCTT+TGG | 0.340515 | 5.3:+73236937 | MS.gene057092:CDS |
| GACTTACCAGAATTTGGATT+TGG | 0.342784 | 5.3:-73236979 | None:intergenic |
| GATTTATCGTATGAAGCTTT+GGG | 0.356570 | 5.3:+73236938 | MS.gene057092:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 5.3:+73238359 | MS.gene057092:CDS |
| TTCGTGCCAAATCCAAATTC+TGG | 0.381119 | 5.3:+73236973 | MS.gene057092:CDS |
| TCCCGGCTAATCTGTGCAAA+AGG | 0.396699 | 5.3:+73238540 | MS.gene057092:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 5.3:-73238363 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 5.3:-73238673 | None:intergenic |
| TGGTGGCTGTCTTAATGATC+TGG | 0.405710 | 5.3:-73238517 | None:intergenic |
| AGCTTCATACGATAAATCTT+AGG | 0.433968 | 5.3:-73236933 | None:intergenic |
| GGATTTGGCACGAACCTCAT+TGG | 0.442665 | 5.3:-73236964 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.448863 | 5.3:+73238434 | MS.gene057092:CDS |
| TTTCTTAAGGAAGTTGAAGA+AGG | 0.460521 | 5.3:+73237113 | MS.gene057092:CDS |
| CTCTGGTGTACAAGAAGATT+AGG | 0.461451 | 5.3:+73238603 | MS.gene057092:CDS |
| ATTGTTGTAGGTATTTCTTA+AGG | 0.471637 | 5.3:+73237100 | MS.gene057092:intron |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 5.3:-73238668 | None:intergenic |
| CCCTTCCGACAACCTGGTAC+TGG | 0.493497 | 5.3:-73236884 | None:intergenic |
| TGGCATCTCGTCATAGGGTC+AGG | 0.499078 | 5.3:+73238483 | MS.gene057092:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 5.3:+73238389 | MS.gene057092:CDS |
| GGAGACAATGTACAACGAAA+TGG | 0.522780 | 5.3:+73238463 | MS.gene057092:CDS |
| AAGGGCTCTTCCCACCGAAA+AGG | 0.526516 | 5.3:+73236902 | MS.gene057092:CDS |
| TTTCACCAGTACCAGGTTGT+CGG | 0.538716 | 5.3:+73236879 | MS.gene057092:CDS |
| CCCGGCTAATCTGTGCAAAA+GGG | 0.540578 | 5.3:+73238541 | MS.gene057092:CDS |
| CGAAATGGCATCTCGTCATA+GGG | 0.541059 | 5.3:+73238478 | MS.gene057092:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 5.3:-73238359 | None:intergenic |
| GAAACAGTTTCACCAGTACC+AGG | 0.549157 | 5.3:+73236872 | MS.gene057092:intron |
| TTCCAAAATCAAGTTCCCTC+TGG | 0.549470 | 5.3:+73238586 | MS.gene057092:CDS |
| AAGAAGGTTAAGAAAAGCAA+TGG | 0.552641 | 5.3:+73237129 | MS.gene057092:CDS |
| CCAGTACCAGGTTGTCGGAA+GGG | 0.555213 | 5.3:+73236884 | MS.gene057092:CDS |
| ACCAGTACCAGGTTGTCGGA+AGG | 0.560011 | 5.3:+73236883 | MS.gene057092:CDS |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 5.3:-73238669 | None:intergenic |
| GTCTTAATGATCTGGATGCA+AGG | 0.568738 | 5.3:-73238509 | None:intergenic |
| TTTGCACAGATTAGCCGGGA+TGG | 0.581078 | 5.3:-73238537 | None:intergenic |
| GCACAGATTAGCCGGGATGG+TGG | 0.585618 | 5.3:-73238534 | None:intergenic |
| GAAGAGCCCTTCCGACAACC+TGG | 0.589985 | 5.3:-73236890 | None:intergenic |
| CATTAAGACAGCCACCATCC+CGG | 0.598852 | 5.3:+73238523 | MS.gene057092:CDS |
| AGAAGATTAGGCCACCAACT+AGG | 0.603627 | 5.3:+73238615 | MS.gene057092:CDS |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 5.3:+73238409 | MS.gene057092:CDS |
| GAAGCTTTGGGCAACCAATG+AGG | 0.631227 | 5.3:+73236950 | MS.gene057092:CDS |
| CTAATCTTCTTGTACACCAG+AGG | 0.631597 | 5.3:-73238602 | None:intergenic |
| TAATCTTCTTGTACACCAGA+GGG | 0.642722 | 5.3:-73238601 | None:intergenic |
| TACTACTCTAAACGGTGCTG+TGG | 0.650976 | 5.3:+73238442 | MS.gene057092:CDS |
| CACCGTTTAGAGTAGTATCA+CGG | 0.660256 | 5.3:-73238436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATGTTAATTGTTGT+AGG | + | chr5.3:73237088-73237107 | MS.gene057092:intron | 15.0% |
| !!! | TTTCAAAGAAGTTTTATTTT+GGG | + | chr5.3:73237771-73237790 | MS.gene057092:intron | 15.0% |
| !!! | TTTTCAAAGAAGTTTTATTT+TGG | + | chr5.3:73237770-73237789 | MS.gene057092:intron | 15.0% |
| !! | AAAAAAGAACAGAAAAACAT+AGG | - | chr5.3:73237798-73237817 | None:intergenic | 20.0% |
| !! | AGTTGTTAATTGAAATTTGA+TGG | + | chr5.3:73237195-73237214 | MS.gene057092:intron | 20.0% |
| !! | ATAAATGACAAAATATGCAA+TGG | - | chr5.3:73238200-73238219 | None:intergenic | 20.0% |
| !! | CACACAAAAAAAAAATATGA+AGG | - | chr5.3:73236820-73236839 | None:intergenic | 20.0% |
| !! | CATTTATTCTAGTAAAAGTA+AGG | + | chr5.3:73238213-73238232 | MS.gene057092:intron | 20.0% |
| !! | GATAAAAATTGAACACAAAA+TGG | - | chr5.3:73237929-73237948 | None:intergenic | 20.0% |
| !! | TTAATTGAAATTTGATGGAA+GGG | + | chr5.3:73237200-73237219 | MS.gene057092:intron | 20.0% |
| ! | AAAGATAAGTCAATACAAAC+AGG | - | chr5.3:73237541-73237560 | None:intergenic | 25.0% |
| ! | AAAGATCTGCAAACAAAAAA+AGG | - | chr5.3:73238330-73238349 | None:intergenic | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | - | chr5.3:73238366-73238385 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | + | chr5.3:73238366-73238385 | MS.gene057092:CDS | 25.0% |
| ! | ATTGTTGTAGGTATTTCTTA+AGG | + | chr5.3:73237100-73237119 | MS.gene057092:intron | 25.0% |
| ! | GTTAATTGAAATTTGATGGA+AGG | + | chr5.3:73237199-73237218 | MS.gene057092:intron | 25.0% |
| ! | TAATAACTAAAGCTAACACA+TGG | - | chr5.3:73238263-73238282 | None:intergenic | 25.0% |
| ! | TCAAAATAAGCCAATTCATT+CGG | + | chr5.3:73237697-73237716 | MS.gene057092:intron | 25.0% |
| ! | TGAAAATATATCCATGCAAA+GGG | + | chr5.3:73237507-73237526 | MS.gene057092:intron | 25.0% |
| ! | TTGAAAATATATCCATGCAA+AGG | + | chr5.3:73237506-73237525 | MS.gene057092:intron | 25.0% |
| !! | AAACTTCTTTGAAAAAGTGA+CGG | - | chr5.3:73237765-73237784 | None:intergenic | 25.0% |
| !! | AAGTAGTTAGTACTTTTGTT+GGG | + | chr5.3:73237949-73237968 | MS.gene057092:intron | 25.0% |
| !!! | AGCTTTTATGTTACTTCATA+TGG | - | chr5.3:73237678-73237697 | None:intergenic | 25.0% |
| !!! | ATTTAAGACTGATTTGGAAA+GGG | + | chr5.3:73238104-73238123 | MS.gene057092:intron | 25.0% |
| !!! | GTATTTAACTTTTATAGCAG+CGG | - | chr5.3:73237907-73237926 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTAAGACTGATT+TGG | + | chr5.3:73238098-73238117 | MS.gene057092:intron | 25.0% |
| AAAGTAAGGCTAATTGAACT+TGG | + | chr5.3:73238227-73238246 | MS.gene057092:intron | 30.0% | |
| AAGAAGGTTAAGAAAAGCAA+TGG | + | chr5.3:73237129-73237148 | MS.gene057092:CDS | 30.0% | |
| AATCTAATGTTACGGTGAAA+TGG | + | chr5.3:73237458-73237477 | MS.gene057092:intron | 30.0% | |
| AGATTTATCGTATGAAGCTT+TGG | + | chr5.3:73236937-73236956 | MS.gene057092:CDS | 30.0% | |
| AGCTTCATACGATAAATCTT+AGG | - | chr5.3:73236936-73236955 | None:intergenic | 30.0% | |
| ATCTAATGTTACGGTGAAAT+GGG | + | chr5.3:73237459-73237478 | MS.gene057092:intron | 30.0% | |
| CAAAATAAGCCAATTCATTC+GGG | + | chr5.3:73237698-73237717 | MS.gene057092:intron | 30.0% | |
| CACCGTAACATTAGATTTAA+GGG | - | chr5.3:73237455-73237474 | None:intergenic | 30.0% | |
| GATTTATCGTATGAAGCTTT+GGG | + | chr5.3:73236938-73236957 | MS.gene057092:CDS | 30.0% | |
| TAACTTCAATTGCAGTTTGT+TGG | + | chr5.3:73238286-73238305 | MS.gene057092:intron | 30.0% | |
| TATGAAGGAAGTTAAACGAT+TGG | - | chr5.3:73236805-73236824 | None:intergenic | 30.0% | |
| TATTATTGATCAGCTTGTCA+AGG | + | chr5.3:73237604-73237623 | MS.gene057092:intron | 30.0% | |
| TCACCGTAACATTAGATTTA+AGG | - | chr5.3:73237456-73237475 | None:intergenic | 30.0% | |
| TGGTTATCACAATATGTACA+AGG | + | chr5.3:73238409-73238428 | MS.gene057092:CDS | 30.0% | |
| TTCACATGAATCACAGTTTA+GGG | - | chr5.3:73237842-73237861 | None:intergenic | 30.0% | |
| TTCTGTTTGTGATTATTGCT+GGG | + | chr5.3:73238009-73238028 | MS.gene057092:intron | 30.0% | |
| TTTCACATGAATCACAGTTT+AGG | - | chr5.3:73237843-73237862 | None:intergenic | 30.0% | |
| TTTCTTAAGGAAGTTGAAGA+AGG | + | chr5.3:73237113-73237132 | MS.gene057092:CDS | 30.0% | |
| ! | AGTAGTTAGTACTTTTGTTG+GGG | + | chr5.3:73237950-73237969 | MS.gene057092:intron | 30.0% |
| ! | CAAGTAGTTAGTACTTTTGT+TGG | + | chr5.3:73237948-73237967 | MS.gene057092:intron | 30.0% |
| ! | CATTAAGTTGTGTAACAAAC+TGG | + | chr5.3:73237429-73237448 | MS.gene057092:intron | 30.0% |
| !! | GATTTAAGACTGATTTGGAA+AGG | + | chr5.3:73238103-73238122 | MS.gene057092:intron | 30.0% |
| AACAGAGACTTACCAGAATT+TGG | - | chr5.3:73236988-73237007 | None:intergenic | 35.0% | |
| CCATAGTTCTTAATCTTGGT+AGG | - | chr5.3:73238362-73238381 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | + | chr5.3:73238359-73238378 | MS.gene057092:CDS | 35.0% | |
| GACTTACCAGAATTTGGATT+TGG | - | chr5.3:73236982-73237001 | None:intergenic | 35.0% | |
| GATTCGTAGAATCACTTCTT+TGG | + | chr5.3:73237286-73237305 | MS.gene057092:intron | 35.0% | |
| GGCCCTTAAATCTAATGTTA+CGG | + | chr5.3:73237450-73237469 | MS.gene057092:intron | 35.0% | |
| GTTCTGTTTGTGATTATTGC+TGG | + | chr5.3:73238008-73238027 | MS.gene057092:intron | 35.0% | |
| TAATCTTCTTGTACACCAGA+GGG | - | chr5.3:73238604-73238623 | None:intergenic | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | + | chr5.3:73238434-73238453 | MS.gene057092:CDS | 35.0% | |
| TCAACTATCAAAGTAGTCAC+TGG | - | chr5.3:73238143-73238162 | None:intergenic | 35.0% | |
| TGTGTGTGTGAATCTTAACA+CGG | + | chr5.3:73236834-73236853 | MS.gene057092:intron | 35.0% | |
| ! | CTTAGGATGTTCATCCTTTT+CGG | - | chr5.3:73236919-73236938 | None:intergenic | 35.0% |
| ! | GAAAAGCAATGGACAAGTTT+TGG | + | chr5.3:73237140-73237159 | MS.gene057092:CDS | 35.0% |
| ! | TTAGTACTTTTGTTGGGGAA+GGG | + | chr5.3:73237955-73237974 | MS.gene057092:intron | 35.0% |
| !! | ACAAGTTTTGGCAATCAATG+AGG | + | chr5.3:73237152-73237171 | MS.gene057092:CDS | 35.0% |
| !! | TTTGGTGCGGATTTGATTTT+GGG | + | chr5.3:73237728-73237747 | MS.gene057092:intron | 35.0% |
| !!! | AACTTGTTTTGAGAAGTCAC+TGG | + | chr5.3:73238054-73238073 | MS.gene057092:intron | 35.0% |
| !!! | TGGCTTTGTAGGTTGTTTTT+AGG | - | chr5.3:73238643-73238662 | None:intergenic | 35.0% |
| AGGCTAATTGAACTTGGAGT+AGG | + | chr5.3:73238233-73238252 | MS.gene057092:intron | 40.0% | |
| ATCAAATCCGCACCAAACAT+AGG | - | chr5.3:73237725-73237744 | None:intergenic | 40.0% | |
| CTAATCTTCTTGTACACCAG+AGG | - | chr5.3:73238605-73238624 | None:intergenic | 40.0% | |
| CTCTGGTGTACAAGAAGATT+AGG | + | chr5.3:73238603-73238622 | MS.gene057092:CDS | 40.0% | |
| GAACAAGCTCTACTTGCAAT+CGG | - | chr5.3:73237992-73238011 | None:intergenic | 40.0% | |
| GAAGGAAGTTAAACGATTGG+TGG | - | chr5.3:73236802-73236821 | None:intergenic | 40.0% | |
| GGAGACAATGTACAACGAAA+TGG | + | chr5.3:73238463-73238482 | MS.gene057092:CDS | 40.0% | |
| GTCTTAATGATCTGGATGCA+AGG | - | chr5.3:73238512-73238531 | None:intergenic | 40.0% | |
| TCAAATCCGCACCAAACATA+GGG | - | chr5.3:73237724-73237743 | None:intergenic | 40.0% | |
| TTCCAAAATCAAGTTCCCTC+TGG | + | chr5.3:73238586-73238605 | MS.gene057092:CDS | 40.0% | |
| TTCGTGCCAAATCCAAATTC+TGG | + | chr5.3:73236973-73236992 | MS.gene057092:CDS | 40.0% | |
| ! | AAACGATTGGTGGTAGTGAT+TGG | - | chr5.3:73236792-73236811 | None:intergenic | 40.0% |
| ! | CACCGTTTAGAGTAGTATCA+CGG | - | chr5.3:73238439-73238458 | None:intergenic | 40.0% |
| ! | GTTAGTACTTTTGTTGGGGA+AGG | + | chr5.3:73237954-73237973 | MS.gene057092:intron | 40.0% |
| !! | TTGCAGTTTGTTGGACATAG+AGG | + | chr5.3:73238295-73238314 | MS.gene057092:intron | 40.0% |
| !!! | GTTGTTTTTAGGCTCCTAGT+TGG | - | chr5.3:73238632-73238651 | None:intergenic | 40.0% |
| !!! | GTTTGGTGCGGATTTGATTT+TGG | + | chr5.3:73237727-73237746 | MS.gene057092:intron | 40.0% |
| AACATAGGGCCCGAATGAAT+TGG | - | chr5.3:73237710-73237729 | None:intergenic | 45.0% | |
| ACGAAATGGCATCTCGTCAT+AGG | + | chr5.3:73238477-73238496 | MS.gene057092:CDS | 45.0% | |
| AGAAGATTAGGCCACCAACT+AGG | + | chr5.3:73238615-73238634 | MS.gene057092:CDS | 45.0% | |
| ATTCATTCGGGCCCTATGTT+TGG | + | chr5.3:73237710-73237729 | MS.gene057092:intron | 45.0% | |
| CGAAATGGCATCTCGTCATA+GGG | + | chr5.3:73238478-73238497 | MS.gene057092:CDS | 45.0% | |
| GAAACAGTTTCACCAGTACC+AGG | + | chr5.3:73236872-73236891 | MS.gene057092:intron | 45.0% | |
| TATCCATGCAAAGGGAGACT+TGG | + | chr5.3:73237515-73237534 | MS.gene057092:intron | 45.0% | |
| TGGTGGCTGTCTTAATGATC+TGG | - | chr5.3:73238520-73238539 | None:intergenic | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | + | chr5.3:73238389-73238408 | MS.gene057092:CDS | 45.0% | |
| TTTCACCAGTACCAGGTTGT+CGG | + | chr5.3:73236879-73236898 | MS.gene057092:CDS | 45.0% | |
| ! | AGGATGTTCATCCTTTTCGG+TGG | - | chr5.3:73236916-73236935 | None:intergenic | 45.0% |
| ! | CACCAGAGGGAACTTGATTT+TGG | - | chr5.3:73238591-73238610 | None:intergenic | 45.0% |
| ! | CATAAACAGGTTGGGCTTCT+TGG | - | chr5.3:73238663-73238682 | None:intergenic | 45.0% |
| ! | GGATGTTCATCCTTTTCGGT+GGG | - | chr5.3:73236915-73236934 | None:intergenic | 45.0% |
| ! | TACTACTCTAAACGGTGCTG+TGG | + | chr5.3:73238442-73238461 | MS.gene057092:CDS | 45.0% |
| ! | TACTTTTGTTGGGGAAGGGA+AGG | + | chr5.3:73237959-73237978 | MS.gene057092:intron | 45.0% |
| ! | TCCCTTTTGCACAGATTAGC+CGG | - | chr5.3:73238545-73238564 | None:intergenic | 45.0% |
| !! | GTTTTTAGGCTCCTAGTTGG+TGG | - | chr5.3:73238629-73238648 | None:intergenic | 45.0% |
| CAAGCTCTACTTGCAATCGG+AGG | - | chr5.3:73237989-73238008 | None:intergenic | 50.0% | |
| CATTAAGACAGCCACCATCC+CGG | + | chr5.3:73238523-73238542 | MS.gene057092:CDS | 50.0% | |
| CCCGGCTAATCTGTGCAAAA+GGG | + | chr5.3:73238541-73238560 | MS.gene057092:CDS | 50.0% | |
| GGATTTGGCACGAACCTCAT+TGG | - | chr5.3:73236967-73236986 | None:intergenic | 50.0% | |
| TCCCGGCTAATCTGTGCAAA+AGG | + | chr5.3:73238540-73238559 | MS.gene057092:CDS | 50.0% | |
| ! | TTTGCACAGATTAGCCGGGA+TGG | - | chr5.3:73238540-73238559 | None:intergenic | 50.0% |
| !! | CCCTTTTGCACAGATTAGCC+GGG | - | chr5.3:73238544-73238563 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGGCAACCAATG+AGG | + | chr5.3:73236950-73236969 | MS.gene057092:CDS | 50.0% |
| !! | GTTGGGCTTCTTGGCTTTGT+AGG | - | chr5.3:73238654-73238673 | None:intergenic | 50.0% |
| AAGGGCTCTTCCCACCGAAA+AGG | + | chr5.3:73236902-73236921 | MS.gene057092:CDS | 55.0% | |
| ACCAGTACCAGGTTGTCGGA+AGG | + | chr5.3:73236883-73236902 | MS.gene057092:CDS | 55.0% | |
| AGGCCAAGTCTCCCTTTGCA+TGG | - | chr5.3:73237521-73237540 | None:intergenic | 55.0% | |
| CCAGTACCAGGTTGTCGGAA+GGG | + | chr5.3:73236884-73236903 | MS.gene057092:CDS | 55.0% | |
| TGGCATCTCGTCATAGGGTC+AGG | + | chr5.3:73238483-73238502 | MS.gene057092:CDS | 55.0% | |
| ! | TTCGGGCCCTATGTTTGGTG+CGG | + | chr5.3:73237715-73237734 | MS.gene057092:intron | 55.0% |
| CCCTTCCGACAACCTGGTAC+TGG | - | chr5.3:73236887-73236906 | None:intergenic | 60.0% | |
| GAAGAGCCCTTCCGACAACC+TGG | - | chr5.3:73236893-73236912 | None:intergenic | 60.0% | |
| ! | GCACAGATTAGCCGGGATGG+TGG | - | chr5.3:73238537-73238556 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73236764 | 73238685 | 73236764 | ID=MS.gene057092 |
| chr5.3 | mRNA | 73236764 | 73238685 | 73236764 | ID=MS.gene057092.t1;Parent=MS.gene057092 |
| chr5.3 | exon | 73236764 | 73236778 | 73236764 | ID=MS.gene057092.t1.exon1;Parent=MS.gene057092.t1 |
| chr5.3 | CDS | 73236764 | 73236778 | 73236764 | ID=cds.MS.gene057092.t1;Parent=MS.gene057092.t1 |
| chr5.3 | exon | 73236879 | 73236994 | 73236879 | ID=MS.gene057092.t1.exon2;Parent=MS.gene057092.t1 |
| chr5.3 | CDS | 73236879 | 73236994 | 73236879 | ID=cds.MS.gene057092.t1;Parent=MS.gene057092.t1 |
| chr5.3 | exon | 73237110 | 73237173 | 73237110 | ID=MS.gene057092.t1.exon3;Parent=MS.gene057092.t1 |
| chr5.3 | CDS | 73237110 | 73237173 | 73237110 | ID=cds.MS.gene057092.t1;Parent=MS.gene057092.t1 |
| chr5.3 | exon | 73238344 | 73238685 | 73238344 | ID=MS.gene057092.t1.exon4;Parent=MS.gene057092.t1 |
| chr5.3 | CDS | 73238344 | 73238685 | 73238344 | ID=cds.MS.gene057092.t1;Parent=MS.gene057092.t1 |
| Gene Sequence |
| Protein sequence |
