Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08912.t1 | XP_013446515.1 | 90 | 339 | 34 | 0 | 1 | 339 | 1 | 339 | 2.70E-158 | 568.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08912.t1 | O76094 | 31.4 | 325 | 207 | 6 | 21 | 339 | 14 | 328 | 3.5e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08912.t1 | A0A072TSZ4 | 90.0 | 339 | 34 | 0 | 1 | 339 | 1 | 339 | 1.9e-158 | 568.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene08912 | 0.86433 | 1.31E-64 | -1.69E-46 |
| MS.gene049209 | MS.gene08912 | 0.809813 | 1.57E-50 | -1.69E-46 |
| MS.gene050817 | MS.gene08912 | 0.818422 | 1.98E-52 | -1.69E-46 |
| MS.gene050894 | MS.gene08912 | 0.84202 | 3.34E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08912.t1 | MTR_8g079990 | 95.882 | 340 | 14 | 0 | 1 | 340 | 1 | 340 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08912.t1 | AT1G67680 | 59.312 | 349 | 124 | 4 | 1 | 333 | 1 | 347 | 5.03e-138 | 407 |
| MS.gene08912.t1 | AT1G67650 | 55.588 | 340 | 138 | 4 | 1 | 333 | 1 | 334 | 4.92e-125 | 373 |
Find 65 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATGGCTGGATTCATTTC+GGG | 0.250936 | 4.4:+16656582 | MS.gene08912:CDS |
| GGGAAGCAATATATGCAAAT+AGG | 0.256001 | 4.4:+16657665 | MS.gene08912:CDS |
| GAATGAAGCTTTGGAGTCTT+TGG | 0.268189 | 4.4:+16656384 | MS.gene08912:CDS |
| AGACTATCAGAAACATCTTT+TGG | 0.278470 | 4.4:-16657556 | None:intergenic |
| GGCTGCGACTGCGTCGGTTT+GGG | 0.291056 | 4.4:-16655046 | None:intergenic |
| ATCATTGATTGGCAGCTTCT+TGG | 0.293542 | 4.4:+16657427 | MS.gene08912:intron |
| AAGGATGGCTGGATTCATTT+CGG | 0.297450 | 4.4:+16656581 | MS.gene08912:CDS |
| GTCTCCTATTGCTGTACAAT+TGG | 0.300746 | 4.4:+16657315 | MS.gene08912:CDS |
| AAATGATGAAACTATGCTTT+TGG | 0.305228 | 4.4:+16656420 | MS.gene08912:CDS |
| GACTGCGTCGGTTTGGGCTT+CGG | 0.340662 | 4.4:-16655040 | None:intergenic |
| TCATTGATTGGCAGCTTCTT+GGG | 0.354425 | 4.4:+16657428 | MS.gene08912:intron |
| AGCAACAAGCAGCTTTGAAT+TGG | 0.358344 | 4.4:+16656609 | MS.gene08912:CDS |
| AATTTCCAACATATCAATCT+TGG | 0.370710 | 4.4:-16656512 | None:intergenic |
| AGGCTGCGACTGCGTCGGTT+TGG | 0.372921 | 4.4:-16655047 | None:intergenic |
| TTTCGGCAATTCAATCTTCT+CGG | 0.374802 | 4.4:+16655339 | MS.gene08912:CDS |
| AAACAAGTTGAATGAAGCTT+TGG | 0.382642 | 4.4:+16656375 | MS.gene08912:CDS |
| TTCTGTTGCTGCCTTAGTTA+TGG | 0.385921 | 4.4:+16656537 | MS.gene08912:CDS |
| TCGATTTGGTGATGCTGTTT+CGG | 0.392201 | 4.4:+16655322 | MS.gene08912:CDS |
| TAGCCCAATTGTACAGCAAT+AGG | 0.402117 | 4.4:-16657319 | None:intergenic |
| GGAAGCAATATATGCAAATA+GGG | 0.413110 | 4.4:+16657666 | MS.gene08912:CDS |
| GTTGCTGCCTTAGTTATGGC+AGG | 0.413143 | 4.4:+16656541 | MS.gene08912:CDS |
| TGAAACTTTCAGCAAAAGAA+AGG | 0.416899 | 4.4:+16657644 | MS.gene08912:CDS |
| ATCTGTAAGTTTAACGGCAT+TGG | 0.418962 | 4.4:-16655137 | None:intergenic |
| GAAGCTTCTGGTAGATATCC+AGG | 0.423941 | 4.4:-16656483 | None:intergenic |
| GGACATGATTAAACGAGATA+TGG | 0.428299 | 4.4:+16657480 | MS.gene08912:CDS |
| TCTCCTATTGCTGTACAATT+GGG | 0.428740 | 4.4:+16657316 | MS.gene08912:CDS |
| AAAGTCCAAGATTGATATGT+TGG | 0.431327 | 4.4:+16656507 | MS.gene08912:CDS |
| AGAGCCTGATGGAAGATAAC+TGG | 0.433802 | 4.4:+16657266 | MS.gene08912:CDS |
| CTGCTTGTTCTTTAATTCAA+AGG | 0.451905 | 4.4:+16656641 | MS.gene08912:CDS |
| ACTCTGATCTGTAAGTTTAA+CGG | 0.452703 | 4.4:-16655143 | None:intergenic |
| CAAAGCTTTCGCCTAGCTCA+TGG | 0.456121 | 4.4:+16657613 | MS.gene08912:CDS |
| TTGATCAAAGATGATCGATT+TGG | 0.465225 | 4.4:+16655308 | MS.gene08912:CDS |
| AATAATCTTGTTTCCCTGAA+AGG | 0.467300 | 4.4:+16657532 | MS.gene08912:CDS |
| ATCTGAAGTTCAAGGATGGC+TGG | 0.467862 | 4.4:+16656570 | MS.gene08912:CDS |
| CTTTCGCCTAGCTCATGGAT+TGG | 0.471476 | 4.4:+16657618 | MS.gene08912:CDS |
| ACAATTGGGCTATGTCCAAC+AGG | 0.482796 | 4.4:+16657330 | MS.gene08912:CDS |
| CAGGCCAGTTATCTTCCATC+AGG | 0.491778 | 4.4:-16657270 | None:intergenic |
| GAAACTTTCAGCAAAAGAAA+GGG | 0.499900 | 4.4:+16657645 | MS.gene08912:CDS |
| TCTTCGAGTGGAGGTGGAGC+GGG | 0.502009 | 4.4:-16655070 | None:intergenic |
| TGATCTCCCTGCCATAACTA+AGG | 0.509736 | 4.4:-16656548 | None:intergenic |
| AGATGCTATTGAAGCTTATG+TGG | 0.514106 | 4.4:+16657459 | MS.gene08912:CDS |
| CATTGGTGAATGCGGAAGCT+TGG | 0.514363 | 4.4:-16655120 | None:intergenic |
| AATAGATCTTCGAGTGGAGG+TGG | 0.517073 | 4.4:-16655076 | None:intergenic |
| ATCTTCTCGGTCTCCTCCTG+AGG | 0.529120 | 4.4:+16655352 | MS.gene08912:CDS |
| TTGGATGTGTTTGTTGAGAG+TGG | 0.536512 | 4.4:-16655101 | None:intergenic |
| AACTGCAATGGACGATTCAT+CGG | 0.545482 | 4.4:-16657503 | None:intergenic |
| GCAGTTCTCGCAATTGCACT+TGG | 0.545659 | 4.4:+16655251 | MS.gene08912:intron |
| AGCTCTTGTTGTCCGCCCGA+AGG | 0.549212 | 4.4:+16656686 | MS.gene08912:CDS |
| TTGCTGCCTTAGTTATGGCA+GGG | 0.553077 | 4.4:+16656542 | MS.gene08912:CDS |
| GCGGGAGGCTGCGACTGCGT+CGG | 0.553576 | 4.4:-16655052 | None:intergenic |
| TCAAGTCCAATCCATGAGCT+AGG | 0.562856 | 4.4:-16657624 | None:intergenic |
| TCGAGTGGAGGTGGAGCGGG+AGG | 0.571792 | 4.4:-16655067 | None:intergenic |
| ATTATTGACTGCAACTGCAA+TGG | 0.572155 | 4.4:-16657515 | None:intergenic |
| ATAGTCTGAAGAAACTTGAT+CGG | 0.576762 | 4.4:+16657572 | MS.gene08912:CDS |
| GGGAGATCATCTGAAGTTCA+AGG | 0.584389 | 4.4:+16656562 | MS.gene08912:CDS |
| ATCTTCGAGTGGAGGTGGAG+CGG | 0.593310 | 4.4:-16655071 | None:intergenic |
| TTTAACGGCATTGGTGAATG+CGG | 0.600801 | 4.4:-16655128 | None:intergenic |
| TCATGCTAACAGGATTGACC+AGG | 0.612401 | 4.4:+16657702 | MS.gene08912:CDS |
| AATTGGTCAAGAGAGCCTGA+TGG | 0.624372 | 4.4:+16657255 | MS.gene08912:CDS |
| GATCATCTGAAGTTCAAGGA+TGG | 0.631439 | 4.4:+16656566 | MS.gene08912:CDS |
| GTGAATAGATCTTCGAGTGG+AGG | 0.646165 | 4.4:-16655079 | None:intergenic |
| TCAACGCAACGATCTTGCAT+CGG | 0.668802 | 4.4:-16655289 | None:intergenic |
| AAGAAGACAGATAAAAGACC+TGG | 0.674874 | 4.4:-16657720 | None:intergenic |
| GTGGTGAATAGATCTTCGAG+TGG | 0.684779 | 4.4:-16655082 | None:intergenic |
| AATATCACATCACCTTCGGG+CGG | 0.714098 | 4.4:-16656698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTTATGACTTAAT+AGG | - | chr4.4:16657180-16657199 | None:intergenic | 10.0% |
| !! | ATATAAATCATTTGTATATA+CGG | + | chr4.4:16656062-16656081 | MS.gene08912:intron | 10.0% |
| !! | TTGCTTATTATATTTATATA+AGG | + | chr4.4:16655498-16655517 | MS.gene08912:intron | 10.0% |
| !! | AATGGTTAATATTATAAACA+TGG | - | chr4.4:16656123-16656142 | None:intergenic | 15.0% |
| !! | ATATTATATATGTACATACA+GGG | - | chr4.4:16656229-16656248 | None:intergenic | 15.0% |
| !! | ATCAATGAATTGAAATTAAA+AGG | - | chr4.4:16655189-16655208 | None:intergenic | 15.0% |
| !!! | AAAATATCTGAAGTAAATTT+GGG | - | chr4.4:16656748-16656767 | None:intergenic | 15.0% |
| !!! | AATTTAAAAGTTTTAACCAA+CGG | + | chr4.4:16655592-16655611 | MS.gene08912:intron | 15.0% |
| !!! | TATATTTTTTCTATCAGAAT+TGG | + | chr4.4:16657238-16657257 | MS.gene08912:intron | 15.0% |
| !!! | TTACTTTGTTGTTTTTAAAT+AGG | + | chr4.4:16656333-16656352 | MS.gene08912:intron | 15.0% |
| !! | AAGTCATAAATTTATTTCCT+GGG | + | chr4.4:16657183-16657202 | MS.gene08912:intron | 20.0% |
| !! | AATATAGTTTATGACAAAAC+AGG | - | chr4.4:16655635-16655654 | None:intergenic | 20.0% |
| !! | ACAAAGTAAAAAATAATCGA+TGG | - | chr4.4:16656322-16656341 | None:intergenic | 20.0% |
| !! | ATTGAATATTTGAATAGTGT+TGG | - | chr4.4:16656821-16656840 | None:intergenic | 20.0% |
| !! | CATATTATATATGTACATAC+AGG | - | chr4.4:16656230-16656249 | None:intergenic | 20.0% |
| !! | TAAGTCATAAATTTATTTCC+TGG | + | chr4.4:16657182-16657201 | MS.gene08912:intron | 20.0% |
| !! | TTAAAAAAATGAAAATCCTC+AGG | - | chr4.4:16655371-16655390 | None:intergenic | 20.0% |
| !! | TTATTCATCGAATTATGAAA+TGG | + | chr4.4:16655790-16655809 | MS.gene08912:intron | 20.0% |
| !!! | ACAATGTAACATTTTTTACA+CGG | - | chr4.4:16655911-16655930 | None:intergenic | 20.0% |
| !!! | AGTTTTAATCAATCATTGAT+TGG | + | chr4.4:16657416-16657435 | MS.gene08912:intron | 20.0% |
| !!! | ATTTACTTCAGATATTTTCA+TGG | + | chr4.4:16656750-16656769 | MS.gene08912:intron | 20.0% |
| !!! | GAAAATATCTGAAGTAAATT+TGG | - | chr4.4:16656749-16656768 | None:intergenic | 20.0% |
| !!! | TGAGGATTTTCATTTTTTTA+AGG | + | chr4.4:16655370-16655389 | MS.gene08912:CDS | 20.0% |
| !!! | TTTACTTCAGATATTTTCAT+GGG | + | chr4.4:16656751-16656770 | MS.gene08912:intron | 20.0% |
| ! | AAGTTCCTTATTGTAAAACA+TGG | + | chr4.4:16657088-16657107 | MS.gene08912:intron | 25.0% |
| ! | AATTTCCAACATATCAATCT+TGG | - | chr4.4:16656515-16656534 | None:intergenic | 25.0% |
| !! | AAATGATGAAACTATGCTTT+TGG | + | chr4.4:16656420-16656439 | MS.gene08912:CDS | 25.0% |
| !! | CAAAATAAGCCTTATACAAA+CGG | + | chr4.4:16655716-16655735 | MS.gene08912:intron | 25.0% |
| !! | TACAATCAAATGTTGTTTGT+CGG | + | chr4.4:16657127-16657146 | MS.gene08912:intron | 25.0% |
| !! | TCATTTTCTATATCTTCATC+AGG | - | chr4.4:16657292-16657311 | None:intergenic | 25.0% |
| !! | TTTGTCCATGTTTTACAATA+AGG | - | chr4.4:16657096-16657115 | None:intergenic | 25.0% |
| !!! | AAGCTCTAAAATAAGTCAAT+CGG | - | chr4.4:16655530-16655549 | None:intergenic | 25.0% |
| !!! | TGATGTGATATTTTGATTGT+GGG | + | chr4.4:16656709-16656728 | MS.gene08912:intron | 25.0% |
| AAAAAATGAAAATCCTCAGG+AGG | - | chr4.4:16655368-16655387 | None:intergenic | 30.0% | |
| AAAGTCCAAGATTGATATGT+TGG | + | chr4.4:16656507-16656526 | MS.gene08912:CDS | 30.0% | |
| ACAAAATTAGTTCATGCACA+TGG | - | chr4.4:16655862-16655881 | None:intergenic | 30.0% | |
| ACTCTGATCTGTAAGTTTAA+CGG | - | chr4.4:16655146-16655165 | None:intergenic | 30.0% | |
| ATAGTCTGAAGAAACTTGAT+CGG | + | chr4.4:16657572-16657591 | MS.gene08912:CDS | 30.0% | |
| ATCATTTGTATATACGGAAG+TGG | + | chr4.4:16656068-16656087 | MS.gene08912:intron | 30.0% | |
| CATGTCATAGAAAACTTTGT+TGG | + | chr4.4:16656267-16656286 | MS.gene08912:intron | 30.0% | |
| CTAAAATAAGTCAATCGGAA+CGG | - | chr4.4:16655525-16655544 | None:intergenic | 30.0% | |
| CTGCTTGTTCTTTAATTCAA+AGG | + | chr4.4:16656641-16656660 | MS.gene08912:CDS | 30.0% | |
| GAAAACTTTGTTGGAGTTTA+TGG | + | chr4.4:16656276-16656295 | MS.gene08912:intron | 30.0% | |
| GAAACTTTCAGCAAAAGAAA+GGG | + | chr4.4:16657645-16657664 | MS.gene08912:CDS | 30.0% | |
| GAACTCTAGTAGTAGATATT+AGG | + | chr4.4:16655835-16655854 | MS.gene08912:intron | 30.0% | |
| GGAAGCAATATATGCAAATA+GGG | + | chr4.4:16657666-16657685 | MS.gene08912:CDS | 30.0% | |
| GTGTTAAAAAATAGACATCG+AGG | - | chr4.4:16656150-16656169 | None:intergenic | 30.0% | |
| TAAAATAAGTCAATCGGAAC+GGG | - | chr4.4:16655524-16655543 | None:intergenic | 30.0% | |
| TCAAAATATCACATCACCTT+CGG | - | chr4.4:16656705-16656724 | None:intergenic | 30.0% | |
| TCATAAATTTATTTCCTGGG+AGG | + | chr4.4:16657186-16657205 | MS.gene08912:intron | 30.0% | |
| TGAAACTTTCAGCAAAAGAA+AGG | + | chr4.4:16657644-16657663 | MS.gene08912:CDS | 30.0% | |
| TGAAATTCAGAATTAGAGCT+AGG | + | chr4.4:16655440-16655459 | MS.gene08912:intron | 30.0% | |
| TTGATCAAAGATGATCGATT+TGG | + | chr4.4:16655308-16655327 | MS.gene08912:CDS | 30.0% | |
| TTTGTATCGTCTTGGAAAAA+TGG | + | chr4.4:16656453-16656472 | MS.gene08912:CDS | 30.0% | |
| ! | AAACAAGTTGAATGAAGCTT+TGG | + | chr4.4:16656375-16656394 | MS.gene08912:CDS | 30.0% |
| ! | AATAATCTTGTTTCCCTGAA+AGG | + | chr4.4:16657532-16657551 | MS.gene08912:CDS | 30.0% |
| ! | AATTATGAAATGGAAGCATG+GGG | + | chr4.4:16655800-16655819 | MS.gene08912:intron | 30.0% |
| ! | AGACTATCAGAAACATCTTT+TGG | - | chr4.4:16657559-16657578 | None:intergenic | 30.0% |
| ! | GAATTATGAAATGGAAGCAT+GGG | + | chr4.4:16655799-16655818 | MS.gene08912:intron | 30.0% |
| ! | TCTCAAATTTTGTATCGTCT+TGG | + | chr4.4:16656445-16656464 | MS.gene08912:CDS | 30.0% |
| !! | AATTTTGGTCATGCATCTTT+TGG | - | chr4.4:16656187-16656206 | None:intergenic | 30.0% |
| !!! | GTGATGTGATATTTTGATTG+TGG | + | chr4.4:16656708-16656727 | MS.gene08912:intron | 30.0% |
| AAACACATACTCGTGAAGTT+TGG | - | chr4.4:16656945-16656964 | None:intergenic | 35.0% | |
| AAGAAGACAGATAAAAGACC+TGG | - | chr4.4:16657723-16657742 | None:intergenic | 35.0% | |
| AATAGACATCGAGGATTGAA+TGG | - | chr4.4:16656141-16656160 | None:intergenic | 35.0% | |
| AGAGAGAAGGTGATAGTTTA+GGG | + | chr4.4:16655753-16655772 | MS.gene08912:intron | 35.0% | |
| AGATGCTATTGAAGCTTATG+TGG | + | chr4.4:16657459-16657478 | MS.gene08912:CDS | 35.0% | |
| ATCTGTAAGTTTAACGGCAT+TGG | - | chr4.4:16655140-16655159 | None:intergenic | 35.0% | |
| ATGACCAAAATTGAACATGG+GGG | + | chr4.4:16656195-16656214 | MS.gene08912:intron | 35.0% | |
| CAAAATATCACATCACCTTC+GGG | - | chr4.4:16656704-16656723 | None:intergenic | 35.0% | |
| CATGACCAAAATTGAACATG+GGG | + | chr4.4:16656194-16656213 | MS.gene08912:intron | 35.0% | |
| CGAATTATGAAATGGAAGCA+TGG | + | chr4.4:16655798-16655817 | MS.gene08912:intron | 35.0% | |
| GCATGACCAAAATTGAACAT+GGG | + | chr4.4:16656193-16656212 | MS.gene08912:intron | 35.0% | |
| GGACATGATTAAACGAGATA+TGG | + | chr4.4:16657480-16657499 | MS.gene08912:CDS | 35.0% | |
| GGGAAGCAATATATGCAAAT+AGG | + | chr4.4:16657665-16657684 | MS.gene08912:CDS | 35.0% | |
| TACAAACGGTTGGACTAAAT+TGG | + | chr4.4:16655730-16655749 | MS.gene08912:intron | 35.0% | |
| TACGAAGATACAATTTCCGT+TGG | - | chr4.4:16655611-16655630 | None:intergenic | 35.0% | |
| TCAGAATTAGAGCTAGGATA+GGG | + | chr4.4:16655446-16655465 | MS.gene08912:intron | 35.0% | |
| TCTCCTATTGCTGTACAATT+GGG | + | chr4.4:16657316-16657335 | MS.gene08912:CDS | 35.0% | |
| TGCATGACCAAAATTGAACA+TGG | + | chr4.4:16656192-16656211 | MS.gene08912:intron | 35.0% | |
| TTAGTCCAACCGTTTGTATA+AGG | - | chr4.4:16655728-16655747 | None:intergenic | 35.0% | |
| TTCAGAATTAGAGCTAGGAT+AGG | + | chr4.4:16655445-16655464 | MS.gene08912:intron | 35.0% | |
| TTTCGGCAATTCAATCTTCT+CGG | + | chr4.4:16655339-16655358 | MS.gene08912:CDS | 35.0% | |
| ! | AAACATCTTTTGGACCTTTC+AGG | - | chr4.4:16657549-16657568 | None:intergenic | 35.0% |
| ! | AACATCTTTTGGACCTTTCA+GGG | - | chr4.4:16657548-16657567 | None:intergenic | 35.0% |
| ! | AATTCCCCCATGTTCAATTT+TGG | - | chr4.4:16656202-16656221 | None:intergenic | 35.0% |
| ! | ATAAGCCTTATACAAACGGT+TGG | + | chr4.4:16655720-16655739 | MS.gene08912:intron | 35.0% |
| ! | ATTATTGACTGCAACTGCAA+TGG | - | chr4.4:16657518-16657537 | None:intergenic | 35.0% |
| ! | CACGAAGCATCTATTACTAA+TGG | - | chr4.4:16657037-16657056 | None:intergenic | 35.0% |
| ! | TTTTGCTTCTTCATGCTAAC+AGG | + | chr4.4:16657692-16657711 | MS.gene08912:CDS | 35.0% |
| AAATCAGAACTCCTACCTGT+TGG | - | chr4.4:16657348-16657367 | None:intergenic | 40.0% | |
| AACTGCAATGGACGATTCAT+CGG | - | chr4.4:16657506-16657525 | None:intergenic | 40.0% | |
| AAGGATGGCTGGATTCATTT+CGG | + | chr4.4:16656581-16656600 | MS.gene08912:CDS | 40.0% | |
| GAGAGAGAAGGTGATAGTTT+AGG | + | chr4.4:16655752-16655771 | MS.gene08912:intron | 40.0% | |
| GTCTCCTATTGCTGTACAAT+TGG | + | chr4.4:16657315-16657334 | MS.gene08912:CDS | 40.0% | |
| GTTTGCAAGTCAAGTGTGAT+TGG | + | chr4.4:16657056-16657075 | MS.gene08912:intron | 40.0% | |
| TAGCCCAATTGTACAGCAAT+AGG | - | chr4.4:16657322-16657341 | None:intergenic | 40.0% | |
| TGGACTAAATTGGAGAGAGA+AGG | + | chr4.4:16655740-16655759 | MS.gene08912:intron | 40.0% | |
| TTCTGTTGCTGCCTTAGTTA+TGG | + | chr4.4:16656537-16656556 | MS.gene08912:CDS | 40.0% | |
| ! | ATCATTGATTGGCAGCTTCT+TGG | + | chr4.4:16657427-16657446 | MS.gene08912:intron | 40.0% |
| ! | GATCATCTGAAGTTCAAGGA+TGG | + | chr4.4:16656566-16656585 | MS.gene08912:CDS | 40.0% |
| ! | TCATTGATTGGCAGCTTCTT+GGG | + | chr4.4:16657428-16657447 | MS.gene08912:intron | 40.0% |
| ! | TTGGATGTGTTTGTTGAGAG+TGG | - | chr4.4:16655104-16655123 | None:intergenic | 40.0% |
| !! | AGCAACAAGCAGCTTTGAAT+TGG | + | chr4.4:16656609-16656628 | MS.gene08912:CDS | 40.0% |
| !! | GAATGAAGCTTTGGAGTCTT+TGG | + | chr4.4:16656384-16656403 | MS.gene08912:CDS | 40.0% |
| !! | TCGATTTGGTGATGCTGTTT+CGG | + | chr4.4:16655322-16655341 | MS.gene08912:CDS | 40.0% |
| !! | TTTAACGGCATTGGTGAATG+CGG | - | chr4.4:16655131-16655150 | None:intergenic | 40.0% |
| !!! | TCTTGGACTTTTGAAGCTTC+TGG | - | chr4.4:16656498-16656517 | None:intergenic | 40.0% |
| AATAGATCTTCGAGTGGAGG+TGG | - | chr4.4:16655079-16655098 | None:intergenic | 45.0% | |
| AATATCACATCACCTTCGGG+CGG | - | chr4.4:16656701-16656720 | None:intergenic | 45.0% | |
| AATTGGTCAAGAGAGCCTGA+TGG | + | chr4.4:16657255-16657274 | MS.gene08912:CDS | 45.0% | |
| ACAATTGGGCTATGTCCAAC+AGG | + | chr4.4:16657330-16657349 | MS.gene08912:CDS | 45.0% | |
| AGAGCCTGATGGAAGATAAC+TGG | + | chr4.4:16657266-16657285 | MS.gene08912:CDS | 45.0% | |
| AGGATGGCTGGATTCATTTC+GGG | + | chr4.4:16656582-16656601 | MS.gene08912:CDS | 45.0% | |
| CCATTCATGTATAACCTCCC+AGG | - | chr4.4:16657203-16657222 | None:intergenic | 45.0% | |
| CCTGGGAGGTTATACATGAA+TGG | + | chr4.4:16657200-16657219 | MS.gene08912:intron | 45.0% | |
| GAAGCTTCTGGTAGATATCC+AGG | - | chr4.4:16656486-16656505 | None:intergenic | 45.0% | |
| GTGAATAGATCTTCGAGTGG+AGG | - | chr4.4:16655082-16655101 | None:intergenic | 45.0% | |
| GTGGTGAATAGATCTTCGAG+TGG | - | chr4.4:16655085-16655104 | None:intergenic | 45.0% | |
| TCAACGCAACGATCTTGCAT+CGG | - | chr4.4:16655292-16655311 | None:intergenic | 45.0% | |
| TCAAGTCCAATCCATGAGCT+AGG | - | chr4.4:16657627-16657646 | None:intergenic | 45.0% | |
| TCATGCTAACAGGATTGACC+AGG | + | chr4.4:16657702-16657721 | MS.gene08912:CDS | 45.0% | |
| TGATCTCCCTGCCATAACTA+AGG | - | chr4.4:16656551-16656570 | None:intergenic | 45.0% | |
| TGGAAAAATGGATGCTTGCC+TGG | + | chr4.4:16656465-16656484 | MS.gene08912:CDS | 45.0% | |
| TTGCTGCCTTAGTTATGGCA+GGG | + | chr4.4:16656542-16656561 | MS.gene08912:CDS | 45.0% | |
| ! | ATCTGAAGTTCAAGGATGGC+TGG | + | chr4.4:16656570-16656589 | MS.gene08912:CDS | 45.0% |
| ! | GGGAGATCATCTGAAGTTCA+AGG | + | chr4.4:16656562-16656581 | MS.gene08912:CDS | 45.0% |
| CAAAGCTTTCGCCTAGCTCA+TGG | + | chr4.4:16657613-16657632 | MS.gene08912:CDS | 50.0% | |
| CAGGCCAGTTATCTTCCATC+AGG | - | chr4.4:16657273-16657292 | None:intergenic | 50.0% | |
| CATTGGTGAATGCGGAAGCT+TGG | - | chr4.4:16655123-16655142 | None:intergenic | 50.0% | |
| CTTTCGCCTAGCTCATGGAT+TGG | + | chr4.4:16657618-16657637 | MS.gene08912:CDS | 50.0% | |
| GCAGTTCTCGCAATTGCACT+TGG | + | chr4.4:16655251-16655270 | MS.gene08912:intron | 50.0% | |
| GTTGCTGCCTTAGTTATGGC+AGG | + | chr4.4:16656541-16656560 | MS.gene08912:CDS | 50.0% | |
| TTGGGCTATGTCCAACAGGT+AGG | + | chr4.4:16657334-16657353 | MS.gene08912:intron | 50.0% | |
| ATCTTCGAGTGGAGGTGGAG+CGG | - | chr4.4:16655074-16655093 | None:intergenic | 55.0% | |
| ATCTTCTCGGTCTCCTCCTG+AGG | + | chr4.4:16655352-16655371 | MS.gene08912:CDS | 55.0% | |
| TCTTCGAGTGGAGGTGGAGC+GGG | - | chr4.4:16655073-16655092 | None:intergenic | 60.0% | |
| ! | AGCTCTTGTTGTCCGCCCGA+AGG | + | chr4.4:16656686-16656705 | MS.gene08912:CDS | 60.0% |
| !! | GACTGCGTCGGTTTGGGCTT+CGG | - | chr4.4:16655043-16655062 | None:intergenic | 60.0% |
| !! | AGGCTGCGACTGCGTCGGTT+TGG | - | chr4.4:16655050-16655069 | None:intergenic | 65.0% |
| !! | GGCTGCGACTGCGTCGGTTT+GGG | - | chr4.4:16655049-16655068 | None:intergenic | 65.0% |
| TCGAGTGGAGGTGGAGCGGG+AGG | - | chr4.4:16655070-16655089 | None:intergenic | 70.0% | |
| GCGGGAGGCTGCGACTGCGT+CGG | - | chr4.4:16655055-16655074 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 16655034 | 16657750 | 16655034 | ID=MS.gene08912 |
| chr4.4 | mRNA | 16655034 | 16657750 | 16655034 | ID=MS.gene08912.t1;Parent=MS.gene08912 |
| chr4.4 | exon | 16655034 | 16655163 | 16655034 | ID=MS.gene08912.t1.exon1;Parent=MS.gene08912.t1 |
| chr4.4 | CDS | 16655034 | 16655163 | 16655034 | ID=cds.MS.gene08912.t1;Parent=MS.gene08912.t1 |
| chr4.4 | exon | 16655255 | 16655391 | 16655255 | ID=MS.gene08912.t1.exon2;Parent=MS.gene08912.t1 |
| chr4.4 | CDS | 16655255 | 16655391 | 16655255 | ID=cds.MS.gene08912.t1;Parent=MS.gene08912.t1 |
| chr4.4 | exon | 16656355 | 16656707 | 16656355 | ID=MS.gene08912.t1.exon3;Parent=MS.gene08912.t1 |
| chr4.4 | CDS | 16656355 | 16656707 | 16656355 | ID=cds.MS.gene08912.t1;Parent=MS.gene08912.t1 |
| chr4.4 | exon | 16657255 | 16657351 | 16657255 | ID=MS.gene08912.t1.exon4;Parent=MS.gene08912.t1 |
| chr4.4 | CDS | 16657255 | 16657351 | 16657255 | ID=cds.MS.gene08912.t1;Parent=MS.gene08912.t1 |
| chr4.4 | exon | 16657442 | 16657750 | 16657442 | ID=MS.gene08912.t1.exon5;Parent=MS.gene08912.t1 |
| chr4.4 | CDS | 16657442 | 16657750 | 16657442 | ID=cds.MS.gene08912.t1;Parent=MS.gene08912.t1 |
| Gene Sequence |
| Protein sequence |
