Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08914.t1 | XP_013446515.1 | 90 | 339 | 34 | 0 | 1 | 339 | 1 | 339 | 2.70E-158 | 568.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08914.t1 | O76094 | 31.4 | 325 | 207 | 6 | 21 | 339 | 14 | 328 | 3.5e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08914.t1 | A0A072TSZ4 | 90.0 | 339 | 34 | 0 | 1 | 339 | 1 | 339 | 1.9e-158 | 568.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene08914 | 0.871105 | 8.81E-67 | -1.69E-46 |
| MS.gene049209 | MS.gene08914 | 0.808627 | 2.82E-50 | -1.69E-46 |
| MS.gene050817 | MS.gene08914 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene050818 | MS.gene08914 | 0.806099 | 9.70E-50 | -1.69E-46 |
| MS.gene050894 | MS.gene08914 | 0.847908 | 8.59E-60 | -1.69E-46 |
| MS.gene055719 | MS.gene08914 | 0.822264 | 2.60E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08914.t1 | MTR_8g079990 | 95.882 | 340 | 14 | 0 | 1 | 340 | 1 | 340 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08914.t1 | AT1G67680 | 59.312 | 349 | 124 | 4 | 1 | 333 | 1 | 347 | 5.03e-138 | 407 |
| MS.gene08914.t1 | AT1G67650 | 55.588 | 340 | 138 | 4 | 1 | 333 | 1 | 334 | 4.92e-125 | 373 |
Find 65 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATGGCTGGATTCATTTC+GGG | 0.250936 | 4.4:+16645368 | MS.gene08914:CDS |
| GGGAAGCAATATATGCAAAT+AGG | 0.256001 | 4.4:+16646451 | MS.gene08914:CDS |
| GAATGAAGCTTTGGAGTCTT+TGG | 0.268189 | 4.4:+16645170 | MS.gene08914:CDS |
| AGACTATCAGAAACATCTTT+TGG | 0.278470 | 4.4:-16646342 | None:intergenic |
| GGCTGCGACTGCGTCGGTTT+GGG | 0.291056 | 4.4:-16643832 | None:intergenic |
| ATCATTGATTGGCAGCTTCT+TGG | 0.293542 | 4.4:+16646213 | MS.gene08914:intron |
| AAGGATGGCTGGATTCATTT+CGG | 0.297450 | 4.4:+16645367 | MS.gene08914:CDS |
| GTCTCCTATTGCTGTACAAT+TGG | 0.300746 | 4.4:+16646101 | MS.gene08914:CDS |
| AAATGATGAAACTATGCTTT+TGG | 0.305228 | 4.4:+16645206 | MS.gene08914:CDS |
| GACTGCGTCGGTTTGGGCTT+CGG | 0.340662 | 4.4:-16643826 | None:intergenic |
| TCATTGATTGGCAGCTTCTT+GGG | 0.354425 | 4.4:+16646214 | MS.gene08914:intron |
| AGCAACAAGCAGCTTTGAAT+TGG | 0.358344 | 4.4:+16645395 | MS.gene08914:CDS |
| AATTTCCAACATATCAATCT+TGG | 0.370710 | 4.4:-16645298 | None:intergenic |
| AGGCTGCGACTGCGTCGGTT+TGG | 0.372921 | 4.4:-16643833 | None:intergenic |
| TTTCGGCAATTCAATCTTCT+CGG | 0.374802 | 4.4:+16644125 | MS.gene08914:CDS |
| AAACAAGTTGAATGAAGCTT+TGG | 0.382642 | 4.4:+16645161 | MS.gene08914:CDS |
| TTCTGTTGCTGCCTTAGTTA+TGG | 0.385921 | 4.4:+16645323 | MS.gene08914:CDS |
| TCGATTTGGTGATGCTGTTT+CGG | 0.392201 | 4.4:+16644108 | MS.gene08914:CDS |
| TAGCCCAATTGTACAGCAAT+AGG | 0.402117 | 4.4:-16646105 | None:intergenic |
| GGAAGCAATATATGCAAATA+GGG | 0.413110 | 4.4:+16646452 | MS.gene08914:CDS |
| GTTGCTGCCTTAGTTATGGC+AGG | 0.413143 | 4.4:+16645327 | MS.gene08914:CDS |
| TGAAACTTTCAGCAAAAGAA+AGG | 0.416899 | 4.4:+16646430 | MS.gene08914:CDS |
| ATCTGTAAGTTTAACGGCAT+TGG | 0.418962 | 4.4:-16643923 | None:intergenic |
| GAAGCTTCTGGTAGATATCC+AGG | 0.423941 | 4.4:-16645269 | None:intergenic |
| GGACATGATTAAACGAGATA+TGG | 0.428299 | 4.4:+16646266 | MS.gene08914:CDS |
| TCTCCTATTGCTGTACAATT+GGG | 0.428740 | 4.4:+16646102 | MS.gene08914:CDS |
| AAAGTCCAAGATTGATATGT+TGG | 0.431327 | 4.4:+16645293 | MS.gene08914:CDS |
| AGAGCCTGATGGAAGATAAC+TGG | 0.433802 | 4.4:+16646052 | MS.gene08914:CDS |
| CTGCTTGTTCTTTAATTCAA+AGG | 0.451905 | 4.4:+16645427 | MS.gene08914:CDS |
| ACTCTGATCTGTAAGTTTAA+CGG | 0.452703 | 4.4:-16643929 | None:intergenic |
| CAAAGCTTTCGCCTAGCTCA+TGG | 0.456121 | 4.4:+16646399 | MS.gene08914:CDS |
| TTGATCAAAGATGATCGATT+TGG | 0.465225 | 4.4:+16644094 | MS.gene08914:CDS |
| AATAATCTTGTTTCCCTGAA+AGG | 0.467300 | 4.4:+16646318 | MS.gene08914:CDS |
| ATCTGAAGTTCAAGGATGGC+TGG | 0.467862 | 4.4:+16645356 | MS.gene08914:CDS |
| CTTTCGCCTAGCTCATGGAT+TGG | 0.471476 | 4.4:+16646404 | MS.gene08914:CDS |
| ACAATTGGGCTATGTCCAAC+AGG | 0.482796 | 4.4:+16646116 | MS.gene08914:CDS |
| CAGGCCAGTTATCTTCCATC+AGG | 0.491778 | 4.4:-16646056 | None:intergenic |
| GAAACTTTCAGCAAAAGAAA+GGG | 0.499900 | 4.4:+16646431 | MS.gene08914:CDS |
| TCTTCGAGTGGAGGTGGAGC+GGG | 0.502009 | 4.4:-16643856 | None:intergenic |
| TGATCTCCCTGCCATAACTA+AGG | 0.509736 | 4.4:-16645334 | None:intergenic |
| AGATGCTATTGAAGCTTATG+TGG | 0.514106 | 4.4:+16646245 | MS.gene08914:CDS |
| CATTGGTGAATGCGGAAGCT+TGG | 0.514363 | 4.4:-16643906 | None:intergenic |
| AATAGATCTTCGAGTGGAGG+TGG | 0.517073 | 4.4:-16643862 | None:intergenic |
| ATCTTCTCGGTCTCCTCCTG+AGG | 0.529120 | 4.4:+16644138 | MS.gene08914:CDS |
| TTGGATGTGTTTGTTGAGAG+TGG | 0.536512 | 4.4:-16643887 | None:intergenic |
| AACTGCAATGGACGATTCAT+CGG | 0.545482 | 4.4:-16646289 | None:intergenic |
| GCAGTTCTCGCAATTGCACT+TGG | 0.545659 | 4.4:+16644037 | MS.gene08914:intron |
| AGCTCTTGTTGTCCGCCCGA+AGG | 0.549212 | 4.4:+16645472 | MS.gene08914:CDS |
| TTGCTGCCTTAGTTATGGCA+GGG | 0.553077 | 4.4:+16645328 | MS.gene08914:CDS |
| GCGGGAGGCTGCGACTGCGT+CGG | 0.553576 | 4.4:-16643838 | None:intergenic |
| TCAAGTCCAATCCATGAGCT+AGG | 0.562856 | 4.4:-16646410 | None:intergenic |
| TCGAGTGGAGGTGGAGCGGG+AGG | 0.571792 | 4.4:-16643853 | None:intergenic |
| ATTATTGACTGCAACTGCAA+TGG | 0.572155 | 4.4:-16646301 | None:intergenic |
| ATAGTCTGAAGAAACTTGAT+CGG | 0.576762 | 4.4:+16646358 | MS.gene08914:CDS |
| GGGAGATCATCTGAAGTTCA+AGG | 0.584389 | 4.4:+16645348 | MS.gene08914:CDS |
| ATCTTCGAGTGGAGGTGGAG+CGG | 0.593310 | 4.4:-16643857 | None:intergenic |
| TTTAACGGCATTGGTGAATG+CGG | 0.600801 | 4.4:-16643914 | None:intergenic |
| TCATGCTAACAGGATTGACC+AGG | 0.612401 | 4.4:+16646488 | MS.gene08914:CDS |
| AATTGGTCAAGAGAGCCTGA+TGG | 0.624372 | 4.4:+16646041 | MS.gene08914:CDS |
| GATCATCTGAAGTTCAAGGA+TGG | 0.631439 | 4.4:+16645352 | MS.gene08914:CDS |
| GTGAATAGATCTTCGAGTGG+AGG | 0.646165 | 4.4:-16643865 | None:intergenic |
| TCAACGCAACGATCTTGCAT+CGG | 0.668802 | 4.4:-16644075 | None:intergenic |
| AAGAAGACAGATAAAAGACC+TGG | 0.674874 | 4.4:-16646506 | None:intergenic |
| GTGGTGAATAGATCTTCGAG+TGG | 0.684779 | 4.4:-16643868 | None:intergenic |
| AATATCACATCACCTTCGGG+CGG | 0.714098 | 4.4:-16645484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTTATGACTTAAT+AGG | - | chr4.4:16645966-16645985 | None:intergenic | 10.0% |
| !! | ATATAAATCATTTGTATATA+CGG | + | chr4.4:16644848-16644867 | MS.gene08914:intron | 10.0% |
| !! | TTGCTTATTATATTTATATA+AGG | + | chr4.4:16644284-16644303 | MS.gene08914:intron | 10.0% |
| !! | AATGGTTAATATTATAAACA+TGG | - | chr4.4:16644909-16644928 | None:intergenic | 15.0% |
| !! | ATATTATATATGTACATACA+GGG | - | chr4.4:16645015-16645034 | None:intergenic | 15.0% |
| !! | ATCAATGAATTGAAATTAAA+AGG | - | chr4.4:16643975-16643994 | None:intergenic | 15.0% |
| !!! | AAAATATCTGAAGTAAATTT+GGG | - | chr4.4:16645534-16645553 | None:intergenic | 15.0% |
| !!! | AATTTAAAAGTTTTAACCAA+CGG | + | chr4.4:16644378-16644397 | MS.gene08914:intron | 15.0% |
| !!! | TATATTTTTTCTATCAGAAT+TGG | + | chr4.4:16646024-16646043 | MS.gene08914:intron | 15.0% |
| !!! | TTACTTTGTTGTTTTTAAAT+AGG | + | chr4.4:16645119-16645138 | MS.gene08914:intron | 15.0% |
| !! | AAGTCATAAATTTATTTCCT+GGG | + | chr4.4:16645969-16645988 | MS.gene08914:intron | 20.0% |
| !! | AATATAGTTTATGACAAAAC+AGG | - | chr4.4:16644421-16644440 | None:intergenic | 20.0% |
| !! | ACAAAGTAAAAAATAATCGA+TGG | - | chr4.4:16645108-16645127 | None:intergenic | 20.0% |
| !! | ATTGAATATTTGAATAGTGT+TGG | - | chr4.4:16645607-16645626 | None:intergenic | 20.0% |
| !! | CATATTATATATGTACATAC+AGG | - | chr4.4:16645016-16645035 | None:intergenic | 20.0% |
| !! | TAAGTCATAAATTTATTTCC+TGG | + | chr4.4:16645968-16645987 | MS.gene08914:intron | 20.0% |
| !! | TTAAAAAAATGAAAATCCTC+AGG | - | chr4.4:16644157-16644176 | None:intergenic | 20.0% |
| !! | TTATTCATCGAATTATGAAA+TGG | + | chr4.4:16644576-16644595 | MS.gene08914:intron | 20.0% |
| !!! | ACAATGTAACATTTTTTACA+CGG | - | chr4.4:16644697-16644716 | None:intergenic | 20.0% |
| !!! | AGTTTTAATCAATCATTGAT+TGG | + | chr4.4:16646202-16646221 | MS.gene08914:intron | 20.0% |
| !!! | ATTTACTTCAGATATTTTCA+TGG | + | chr4.4:16645536-16645555 | MS.gene08914:intron | 20.0% |
| !!! | GAAAATATCTGAAGTAAATT+TGG | - | chr4.4:16645535-16645554 | None:intergenic | 20.0% |
| !!! | TGAGGATTTTCATTTTTTTA+AGG | + | chr4.4:16644156-16644175 | MS.gene08914:CDS | 20.0% |
| !!! | TTTACTTCAGATATTTTCAT+GGG | + | chr4.4:16645537-16645556 | MS.gene08914:intron | 20.0% |
| ! | AAGTTCCTTATTGTAAAACA+TGG | + | chr4.4:16645874-16645893 | MS.gene08914:intron | 25.0% |
| ! | AATTTCCAACATATCAATCT+TGG | - | chr4.4:16645301-16645320 | None:intergenic | 25.0% |
| !! | AAATGATGAAACTATGCTTT+TGG | + | chr4.4:16645206-16645225 | MS.gene08914:CDS | 25.0% |
| !! | CAAAATAAGCCTTATACAAA+CGG | + | chr4.4:16644502-16644521 | MS.gene08914:intron | 25.0% |
| !! | TACAATCAAATGTTGTTTGT+CGG | + | chr4.4:16645913-16645932 | MS.gene08914:intron | 25.0% |
| !! | TCATTTTCTATATCTTCATC+AGG | - | chr4.4:16646078-16646097 | None:intergenic | 25.0% |
| !! | TTTGTCCATGTTTTACAATA+AGG | - | chr4.4:16645882-16645901 | None:intergenic | 25.0% |
| !!! | AAGCTCTAAAATAAGTCAAT+CGG | - | chr4.4:16644316-16644335 | None:intergenic | 25.0% |
| !!! | TGATGTGATATTTTGATTGT+GGG | + | chr4.4:16645495-16645514 | MS.gene08914:intron | 25.0% |
| AAAAAATGAAAATCCTCAGG+AGG | - | chr4.4:16644154-16644173 | None:intergenic | 30.0% | |
| AAAGTCCAAGATTGATATGT+TGG | + | chr4.4:16645293-16645312 | MS.gene08914:CDS | 30.0% | |
| ACAAAATTAGTTCATGCACA+TGG | - | chr4.4:16644648-16644667 | None:intergenic | 30.0% | |
| ACTCTGATCTGTAAGTTTAA+CGG | - | chr4.4:16643932-16643951 | None:intergenic | 30.0% | |
| ATAGTCTGAAGAAACTTGAT+CGG | + | chr4.4:16646358-16646377 | MS.gene08914:CDS | 30.0% | |
| ATCATTTGTATATACGGAAG+TGG | + | chr4.4:16644854-16644873 | MS.gene08914:intron | 30.0% | |
| CATGTCATAGAAAACTTTGT+TGG | + | chr4.4:16645053-16645072 | MS.gene08914:intron | 30.0% | |
| CTAAAATAAGTCAATCGGAA+CGG | - | chr4.4:16644311-16644330 | None:intergenic | 30.0% | |
| CTGCTTGTTCTTTAATTCAA+AGG | + | chr4.4:16645427-16645446 | MS.gene08914:CDS | 30.0% | |
| GAAAACTTTGTTGGAGTTTA+TGG | + | chr4.4:16645062-16645081 | MS.gene08914:intron | 30.0% | |
| GAAACTTTCAGCAAAAGAAA+GGG | + | chr4.4:16646431-16646450 | MS.gene08914:CDS | 30.0% | |
| GAACTCTAGTAGTAGATATT+AGG | + | chr4.4:16644621-16644640 | MS.gene08914:intron | 30.0% | |
| GGAAGCAATATATGCAAATA+GGG | + | chr4.4:16646452-16646471 | MS.gene08914:CDS | 30.0% | |
| GTGTTAAAAAATAGACATCG+AGG | - | chr4.4:16644936-16644955 | None:intergenic | 30.0% | |
| TAAAATAAGTCAATCGGAAC+GGG | - | chr4.4:16644310-16644329 | None:intergenic | 30.0% | |
| TCAAAATATCACATCACCTT+CGG | - | chr4.4:16645491-16645510 | None:intergenic | 30.0% | |
| TCATAAATTTATTTCCTGGG+AGG | + | chr4.4:16645972-16645991 | MS.gene08914:intron | 30.0% | |
| TGAAACTTTCAGCAAAAGAA+AGG | + | chr4.4:16646430-16646449 | MS.gene08914:CDS | 30.0% | |
| TGAAATTCAGAATTAGAGCT+AGG | + | chr4.4:16644226-16644245 | MS.gene08914:intron | 30.0% | |
| TTGATCAAAGATGATCGATT+TGG | + | chr4.4:16644094-16644113 | MS.gene08914:CDS | 30.0% | |
| TTTGTATCGTCTTGGAAAAA+TGG | + | chr4.4:16645239-16645258 | MS.gene08914:CDS | 30.0% | |
| ! | AAACAAGTTGAATGAAGCTT+TGG | + | chr4.4:16645161-16645180 | MS.gene08914:CDS | 30.0% |
| ! | AATAATCTTGTTTCCCTGAA+AGG | + | chr4.4:16646318-16646337 | MS.gene08914:CDS | 30.0% |
| ! | AATTATGAAATGGAAGCATG+GGG | + | chr4.4:16644586-16644605 | MS.gene08914:intron | 30.0% |
| ! | AGACTATCAGAAACATCTTT+TGG | - | chr4.4:16646345-16646364 | None:intergenic | 30.0% |
| ! | GAATTATGAAATGGAAGCAT+GGG | + | chr4.4:16644585-16644604 | MS.gene08914:intron | 30.0% |
| ! | TCTCAAATTTTGTATCGTCT+TGG | + | chr4.4:16645231-16645250 | MS.gene08914:CDS | 30.0% |
| !! | AATTTTGGTCATGCATCTTT+TGG | - | chr4.4:16644973-16644992 | None:intergenic | 30.0% |
| !!! | GTGATGTGATATTTTGATTG+TGG | + | chr4.4:16645494-16645513 | MS.gene08914:intron | 30.0% |
| AAACACATACTCGTGAAGTT+TGG | - | chr4.4:16645731-16645750 | None:intergenic | 35.0% | |
| AAGAAGACAGATAAAAGACC+TGG | - | chr4.4:16646509-16646528 | None:intergenic | 35.0% | |
| AATAGACATCGAGGATTGAA+TGG | - | chr4.4:16644927-16644946 | None:intergenic | 35.0% | |
| AGAGAGAAGGTGATAGTTTA+GGG | + | chr4.4:16644539-16644558 | MS.gene08914:intron | 35.0% | |
| AGATGCTATTGAAGCTTATG+TGG | + | chr4.4:16646245-16646264 | MS.gene08914:CDS | 35.0% | |
| ATCTGTAAGTTTAACGGCAT+TGG | - | chr4.4:16643926-16643945 | None:intergenic | 35.0% | |
| ATGACCAAAATTGAACATGG+GGG | + | chr4.4:16644981-16645000 | MS.gene08914:intron | 35.0% | |
| CAAAATATCACATCACCTTC+GGG | - | chr4.4:16645490-16645509 | None:intergenic | 35.0% | |
| CATGACCAAAATTGAACATG+GGG | + | chr4.4:16644980-16644999 | MS.gene08914:intron | 35.0% | |
| CGAATTATGAAATGGAAGCA+TGG | + | chr4.4:16644584-16644603 | MS.gene08914:intron | 35.0% | |
| GCATGACCAAAATTGAACAT+GGG | + | chr4.4:16644979-16644998 | MS.gene08914:intron | 35.0% | |
| GGACATGATTAAACGAGATA+TGG | + | chr4.4:16646266-16646285 | MS.gene08914:CDS | 35.0% | |
| GGGAAGCAATATATGCAAAT+AGG | + | chr4.4:16646451-16646470 | MS.gene08914:CDS | 35.0% | |
| TACAAACGGTTGGACTAAAT+TGG | + | chr4.4:16644516-16644535 | MS.gene08914:intron | 35.0% | |
| TACGAAGATACAATTTCCGT+TGG | - | chr4.4:16644397-16644416 | None:intergenic | 35.0% | |
| TCAGAATTAGAGCTAGGATA+GGG | + | chr4.4:16644232-16644251 | MS.gene08914:intron | 35.0% | |
| TCTCCTATTGCTGTACAATT+GGG | + | chr4.4:16646102-16646121 | MS.gene08914:CDS | 35.0% | |
| TGCATGACCAAAATTGAACA+TGG | + | chr4.4:16644978-16644997 | MS.gene08914:intron | 35.0% | |
| TTAGTCCAACCGTTTGTATA+AGG | - | chr4.4:16644514-16644533 | None:intergenic | 35.0% | |
| TTCAGAATTAGAGCTAGGAT+AGG | + | chr4.4:16644231-16644250 | MS.gene08914:intron | 35.0% | |
| TTTCGGCAATTCAATCTTCT+CGG | + | chr4.4:16644125-16644144 | MS.gene08914:CDS | 35.0% | |
| ! | AAACATCTTTTGGACCTTTC+AGG | - | chr4.4:16646335-16646354 | None:intergenic | 35.0% |
| ! | AACATCTTTTGGACCTTTCA+GGG | - | chr4.4:16646334-16646353 | None:intergenic | 35.0% |
| ! | AATTCCCCCATGTTCAATTT+TGG | - | chr4.4:16644988-16645007 | None:intergenic | 35.0% |
| ! | ATAAGCCTTATACAAACGGT+TGG | + | chr4.4:16644506-16644525 | MS.gene08914:intron | 35.0% |
| ! | ATTATTGACTGCAACTGCAA+TGG | - | chr4.4:16646304-16646323 | None:intergenic | 35.0% |
| ! | CACGAAGCATCTATTACTAA+TGG | - | chr4.4:16645823-16645842 | None:intergenic | 35.0% |
| ! | TTTTGCTTCTTCATGCTAAC+AGG | + | chr4.4:16646478-16646497 | MS.gene08914:CDS | 35.0% |
| AAATCAGAACTCCTACCTGT+TGG | - | chr4.4:16646134-16646153 | None:intergenic | 40.0% | |
| AACTGCAATGGACGATTCAT+CGG | - | chr4.4:16646292-16646311 | None:intergenic | 40.0% | |
| AAGGATGGCTGGATTCATTT+CGG | + | chr4.4:16645367-16645386 | MS.gene08914:CDS | 40.0% | |
| GAGAGAGAAGGTGATAGTTT+AGG | + | chr4.4:16644538-16644557 | MS.gene08914:intron | 40.0% | |
| GTCTCCTATTGCTGTACAAT+TGG | + | chr4.4:16646101-16646120 | MS.gene08914:CDS | 40.0% | |
| GTTTGCAAGTCAAGTGTGAT+TGG | + | chr4.4:16645842-16645861 | MS.gene08914:intron | 40.0% | |
| TAGCCCAATTGTACAGCAAT+AGG | - | chr4.4:16646108-16646127 | None:intergenic | 40.0% | |
| TGGACTAAATTGGAGAGAGA+AGG | + | chr4.4:16644526-16644545 | MS.gene08914:intron | 40.0% | |
| TTCTGTTGCTGCCTTAGTTA+TGG | + | chr4.4:16645323-16645342 | MS.gene08914:CDS | 40.0% | |
| ! | ATCATTGATTGGCAGCTTCT+TGG | + | chr4.4:16646213-16646232 | MS.gene08914:intron | 40.0% |
| ! | GATCATCTGAAGTTCAAGGA+TGG | + | chr4.4:16645352-16645371 | MS.gene08914:CDS | 40.0% |
| ! | TCATTGATTGGCAGCTTCTT+GGG | + | chr4.4:16646214-16646233 | MS.gene08914:intron | 40.0% |
| ! | TTGGATGTGTTTGTTGAGAG+TGG | - | chr4.4:16643890-16643909 | None:intergenic | 40.0% |
| !! | AGCAACAAGCAGCTTTGAAT+TGG | + | chr4.4:16645395-16645414 | MS.gene08914:CDS | 40.0% |
| !! | GAATGAAGCTTTGGAGTCTT+TGG | + | chr4.4:16645170-16645189 | MS.gene08914:CDS | 40.0% |
| !! | TCGATTTGGTGATGCTGTTT+CGG | + | chr4.4:16644108-16644127 | MS.gene08914:CDS | 40.0% |
| !! | TTTAACGGCATTGGTGAATG+CGG | - | chr4.4:16643917-16643936 | None:intergenic | 40.0% |
| !!! | TCTTGGACTTTTGAAGCTTC+TGG | - | chr4.4:16645284-16645303 | None:intergenic | 40.0% |
| AATAGATCTTCGAGTGGAGG+TGG | - | chr4.4:16643865-16643884 | None:intergenic | 45.0% | |
| AATATCACATCACCTTCGGG+CGG | - | chr4.4:16645487-16645506 | None:intergenic | 45.0% | |
| AATTGGTCAAGAGAGCCTGA+TGG | + | chr4.4:16646041-16646060 | MS.gene08914:CDS | 45.0% | |
| ACAATTGGGCTATGTCCAAC+AGG | + | chr4.4:16646116-16646135 | MS.gene08914:CDS | 45.0% | |
| AGAGCCTGATGGAAGATAAC+TGG | + | chr4.4:16646052-16646071 | MS.gene08914:CDS | 45.0% | |
| AGGATGGCTGGATTCATTTC+GGG | + | chr4.4:16645368-16645387 | MS.gene08914:CDS | 45.0% | |
| CCATTCATGTATAACCTCCC+AGG | - | chr4.4:16645989-16646008 | None:intergenic | 45.0% | |
| CCTGGGAGGTTATACATGAA+TGG | + | chr4.4:16645986-16646005 | MS.gene08914:intron | 45.0% | |
| GAAGCTTCTGGTAGATATCC+AGG | - | chr4.4:16645272-16645291 | None:intergenic | 45.0% | |
| GTGAATAGATCTTCGAGTGG+AGG | - | chr4.4:16643868-16643887 | None:intergenic | 45.0% | |
| GTGGTGAATAGATCTTCGAG+TGG | - | chr4.4:16643871-16643890 | None:intergenic | 45.0% | |
| TCAACGCAACGATCTTGCAT+CGG | - | chr4.4:16644078-16644097 | None:intergenic | 45.0% | |
| TCAAGTCCAATCCATGAGCT+AGG | - | chr4.4:16646413-16646432 | None:intergenic | 45.0% | |
| TCATGCTAACAGGATTGACC+AGG | + | chr4.4:16646488-16646507 | MS.gene08914:CDS | 45.0% | |
| TGATCTCCCTGCCATAACTA+AGG | - | chr4.4:16645337-16645356 | None:intergenic | 45.0% | |
| TGGAAAAATGGATGCTTGCC+TGG | + | chr4.4:16645251-16645270 | MS.gene08914:CDS | 45.0% | |
| TTGCTGCCTTAGTTATGGCA+GGG | + | chr4.4:16645328-16645347 | MS.gene08914:CDS | 45.0% | |
| ! | ATCTGAAGTTCAAGGATGGC+TGG | + | chr4.4:16645356-16645375 | MS.gene08914:CDS | 45.0% |
| ! | GGGAGATCATCTGAAGTTCA+AGG | + | chr4.4:16645348-16645367 | MS.gene08914:CDS | 45.0% |
| CAAAGCTTTCGCCTAGCTCA+TGG | + | chr4.4:16646399-16646418 | MS.gene08914:CDS | 50.0% | |
| CAGGCCAGTTATCTTCCATC+AGG | - | chr4.4:16646059-16646078 | None:intergenic | 50.0% | |
| CATTGGTGAATGCGGAAGCT+TGG | - | chr4.4:16643909-16643928 | None:intergenic | 50.0% | |
| CTTTCGCCTAGCTCATGGAT+TGG | + | chr4.4:16646404-16646423 | MS.gene08914:CDS | 50.0% | |
| GCAGTTCTCGCAATTGCACT+TGG | + | chr4.4:16644037-16644056 | MS.gene08914:intron | 50.0% | |
| GTTGCTGCCTTAGTTATGGC+AGG | + | chr4.4:16645327-16645346 | MS.gene08914:CDS | 50.0% | |
| TTGGGCTATGTCCAACAGGT+AGG | + | chr4.4:16646120-16646139 | MS.gene08914:intron | 50.0% | |
| ATCTTCGAGTGGAGGTGGAG+CGG | - | chr4.4:16643860-16643879 | None:intergenic | 55.0% | |
| ATCTTCTCGGTCTCCTCCTG+AGG | + | chr4.4:16644138-16644157 | MS.gene08914:CDS | 55.0% | |
| TCTTCGAGTGGAGGTGGAGC+GGG | - | chr4.4:16643859-16643878 | None:intergenic | 60.0% | |
| ! | AGCTCTTGTTGTCCGCCCGA+AGG | + | chr4.4:16645472-16645491 | MS.gene08914:CDS | 60.0% |
| !! | GACTGCGTCGGTTTGGGCTT+CGG | - | chr4.4:16643829-16643848 | None:intergenic | 60.0% |
| !! | AGGCTGCGACTGCGTCGGTT+TGG | - | chr4.4:16643836-16643855 | None:intergenic | 65.0% |
| !! | GGCTGCGACTGCGTCGGTTT+GGG | - | chr4.4:16643835-16643854 | None:intergenic | 65.0% |
| TCGAGTGGAGGTGGAGCGGG+AGG | - | chr4.4:16643856-16643875 | None:intergenic | 70.0% | |
| GCGGGAGGCTGCGACTGCGT+CGG | - | chr4.4:16643841-16643860 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 16643820 | 16646536 | 16643820 | ID=MS.gene08914 |
| chr4.4 | mRNA | 16643820 | 16646536 | 16643820 | ID=MS.gene08914.t1;Parent=MS.gene08914 |
| chr4.4 | exon | 16643820 | 16643949 | 16643820 | ID=MS.gene08914.t1.exon1;Parent=MS.gene08914.t1 |
| chr4.4 | CDS | 16643820 | 16643949 | 16643820 | ID=cds.MS.gene08914.t1;Parent=MS.gene08914.t1 |
| chr4.4 | exon | 16644041 | 16644177 | 16644041 | ID=MS.gene08914.t1.exon2;Parent=MS.gene08914.t1 |
| chr4.4 | CDS | 16644041 | 16644177 | 16644041 | ID=cds.MS.gene08914.t1;Parent=MS.gene08914.t1 |
| chr4.4 | exon | 16645141 | 16645493 | 16645141 | ID=MS.gene08914.t1.exon3;Parent=MS.gene08914.t1 |
| chr4.4 | CDS | 16645141 | 16645493 | 16645141 | ID=cds.MS.gene08914.t1;Parent=MS.gene08914.t1 |
| chr4.4 | exon | 16646041 | 16646137 | 16646041 | ID=MS.gene08914.t1.exon4;Parent=MS.gene08914.t1 |
| chr4.4 | CDS | 16646041 | 16646137 | 16646041 | ID=cds.MS.gene08914.t1;Parent=MS.gene08914.t1 |
| chr4.4 | exon | 16646228 | 16646536 | 16646228 | ID=MS.gene08914.t1.exon5;Parent=MS.gene08914.t1 |
| chr4.4 | CDS | 16646228 | 16646536 | 16646228 | ID=cds.MS.gene08914.t1;Parent=MS.gene08914.t1 |
| Gene Sequence |
| Protein sequence |
