Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09012.t1 | XP_003630500.1 | 92.9 | 241 | 11 | 2 | 1 | 241 | 1 | 235 | 4.80E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09012.t1 | Q9SFC6 | 63.5 | 178 | 61 | 1 | 61 | 238 | 65 | 238 | 8.2e-62 | 238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09012.t1 | G7LHB3 | 92.9 | 241 | 11 | 2 | 1 | 241 | 1 | 235 | 3.5e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051687 | MS.gene09012 | 0.828678 | 7.87E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09012.t1 | MTR_8g097200 | 95.436 | 241 | 5 | 2 | 1 | 241 | 1 | 235 | 1.13e-168 | 464 |
| MS.gene09012.t1 | MTR_3g084940 | 66.260 | 246 | 62 | 5 | 1 | 241 | 1 | 230 | 2.21e-103 | 299 |
| MS.gene09012.t1 | MTR_4g133060 | 67.232 | 177 | 54 | 1 | 61 | 237 | 23 | 195 | 8.55e-85 | 251 |
| MS.gene09012.t1 | MTR_4g133060 | 67.232 | 177 | 54 | 1 | 61 | 237 | 49 | 221 | 1.09e-84 | 251 |
| MS.gene09012.t1 | MTR_3g082970 | 63.684 | 190 | 65 | 1 | 48 | 237 | 40 | 225 | 4.11e-84 | 250 |
| MS.gene09012.t1 | MTR_2g025740 | 63.536 | 181 | 62 | 1 | 57 | 237 | 56 | 232 | 6.88e-83 | 247 |
| MS.gene09012.t1 | MTR_4g133060 | 65.680 | 169 | 58 | 0 | 61 | 229 | 49 | 217 | 5.65e-77 | 232 |
| MS.gene09012.t1 | MTR_7g097270 | 46.667 | 195 | 95 | 4 | 43 | 236 | 32 | 218 | 1.83e-57 | 182 |
| MS.gene09012.t1 | MTR_7g097270 | 46.875 | 128 | 63 | 3 | 43 | 169 | 32 | 155 | 1.90e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09012.t1 | AT3G07880 | 62.304 | 191 | 68 | 1 | 49 | 239 | 53 | 239 | 1.95e-84 | 251 |
| MS.gene09012.t1 | AT1G62450 | 58.659 | 179 | 68 | 2 | 61 | 237 | 48 | 222 | 5.67e-69 | 211 |
| MS.gene09012.t1 | AT1G12070 | 58.101 | 179 | 69 | 2 | 61 | 237 | 48 | 222 | 2.26e-68 | 210 |
Find 63 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCAAGCTGTTCTTTA+AGG | 0.103059 | 4.4:+15193269 | None:intergenic |
| ACCAATGTTGTTTGGAAAAC+TGG | 0.188780 | 4.4:-15192541 | MS.gene09012:CDS |
| GCTACTTGGATGCTAGTTAT+AGG | 0.254947 | 4.4:-15191997 | MS.gene09012:CDS |
| TCTTCCAATTCATATGTATA+TGG | 0.260334 | 4.4:+15192361 | None:intergenic |
| AGCATTGAAGGAAACATCTT+TGG | 0.319587 | 4.4:+15193432 | None:intergenic |
| GTCTCCAACAACATAGTTTC+TGG | 0.320251 | 4.4:-15192574 | MS.gene09012:CDS |
| GAAGAAGAAATTACTCCTTC+AGG | 0.321742 | 4.4:-15192343 | MS.gene09012:CDS |
| TTTCTCAAGCTGTTCTTTAA+GGG | 0.328321 | 4.4:+15193270 | None:intergenic |
| TCTTCCTCTTCATCTTCATC+TGG | 0.347069 | 4.4:+15193334 | None:intergenic |
| ATGATGAAAGCTTGAGGAAA+TGG | 0.349670 | 4.4:-15193145 | MS.gene09012:CDS |
| AAATGGAAAGAGCAACTTCT+AGG | 0.351067 | 4.4:-15193128 | MS.gene09012:CDS |
| TCAAATATACCAATGTTGTT+TGG | 0.363873 | 4.4:-15192549 | MS.gene09012:CDS |
| GAATCAGCGGTGAATGGAAT+TGG | 0.371922 | 4.4:+15192658 | None:intergenic |
| AGGCTCACTATCTTCACTTC+TGG | 0.373576 | 4.4:+15192718 | None:intergenic |
| GGTTTGAGATTCAGAAGAAT+TGG | 0.376482 | 4.4:-15191976 | MS.gene09012:CDS |
| AGGCCTTCCTTGGCATATAA+TGG | 0.379225 | 4.4:+15192693 | None:intergenic |
| TGTTTCCTTCAATGCTCATT+TGG | 0.380600 | 4.4:-15193425 | MS.gene09012:CDS |
| GGAAGAACCTAAGTTGGAAT+TGG | 0.382333 | 4.4:-15193311 | MS.gene09012:CDS |
| TTCCTCCAAATGAGCATTGA+AGG | 0.385347 | 4.4:+15193420 | None:intergenic |
| GGAACCATATACATATGAAT+TGG | 0.395037 | 4.4:-15192365 | MS.gene09012:CDS |
| CCTAAGTTGGAATTGGATCT+TGG | 0.402975 | 4.4:-15193304 | MS.gene09012:CDS |
| CCAAGATCCAATTCCAACTT+AGG | 0.415301 | 4.4:+15193304 | None:intergenic |
| CCAATGTTGTTTGGAAAACT+GGG | 0.429548 | 4.4:-15192540 | MS.gene09012:CDS |
| TGCCTTGGTTCTTGCTGAGT+AGG | 0.432503 | 4.4:+15192303 | None:intergenic |
| GTTTGGAAAACTGGGGTTAG+AGG | 0.436517 | 4.4:-15192532 | MS.gene09012:intron |
| GAGGCCAGAAACTATGTTGT+TGG | 0.443718 | 4.4:+15192570 | None:intergenic |
| GGAAGAGGAAGAACCTAAGT+TGG | 0.456835 | 4.4:-15193317 | MS.gene09012:CDS |
| ATAGTTGACACCAACCTTGT+TGG | 0.461291 | 4.4:+15193378 | None:intergenic |
| AGATTAGGTCAGGCCTTCCT+TGG | 0.466881 | 4.4:+15192683 | None:intergenic |
| AAACAACATTGGTATATTTG+AGG | 0.467217 | 4.4:+15192551 | None:intergenic |
| TCAAGGAAGGAAGCCAATAC+AGG | 0.471561 | 4.4:-15192615 | MS.gene09012:CDS |
| TATGTATATGGTTCCTGCTG+TGG | 0.482809 | 4.4:+15192373 | None:intergenic |
| TTCCTTCAATGCTCATTTGG+AGG | 0.498763 | 4.4:-15193422 | MS.gene09012:CDS |
| TGATGATCGCAAATGCTACT+TGG | 0.504667 | 4.4:-15192011 | MS.gene09012:CDS |
| GAGAACACCAAGAAAATGTT+GGG | 0.505438 | 4.4:-15192406 | MS.gene09012:CDS |
| AGATGAAGATGAAGAGGAAG+AGG | 0.507523 | 4.4:-15193332 | MS.gene09012:CDS |
| GGAATTGGCAAGATTAGGTC+AGG | 0.511505 | 4.4:+15192673 | None:intergenic |
| AATCTGTCTCAGTGTGGTGT+AGG | 0.514298 | 4.4:+15191953 | None:intergenic |
| AAAGAGCATGTTCACTCTCA+AGG | 0.517312 | 4.4:-15192632 | MS.gene09012:CDS |
| GGAGAACACCAAGAAAATGT+TGG | 0.520006 | 4.4:-15192407 | MS.gene09012:CDS |
| CCTTCAGGCTTGTTTGCTAG+AGG | 0.534121 | 4.4:-15192328 | MS.gene09012:CDS |
| TGAATGGAATTGGCAAGATT+AGG | 0.534268 | 4.4:+15192668 | None:intergenic |
| ATGTATATGGTTCCTGCTGT+GGG | 0.540348 | 4.4:+15192374 | None:intergenic |
| TGTGCCAGATGAAGATGAAG+AGG | 0.547332 | 4.4:-15193338 | MS.gene09012:CDS |
| GTGGATGTGTCTGCTGTTGG+AGG | 0.550509 | 4.4:-15193101 | MS.gene09012:intron |
| AATGTGGATGTGTCTGCTGT+TGG | 0.567791 | 4.4:-15193104 | MS.gene09012:CDS |
| AGAGCAACTTCTAGGAAATG+TGG | 0.570308 | 4.4:-15193120 | MS.gene09012:CDS |
| TTCCTTGGCATATAATGGTG+AGG | 0.572917 | 4.4:+15192698 | None:intergenic |
| TAAAGGATGATGAAAGCTTG+AGG | 0.574330 | 4.4:-15193151 | MS.gene09012:intron |
| AGCCTCACCATTATATGCCA+AGG | 0.579531 | 4.4:-15192700 | MS.gene09012:CDS |
| GGGAACTTATAGCCCACAGC+AGG | 0.598988 | 4.4:-15192386 | MS.gene09012:CDS |
| AGCATGTTCACTCTCAAGGA+AGG | 0.602637 | 4.4:-15192628 | MS.gene09012:CDS |
| AACAAAGGAACCAACAAGGT+TGG | 0.603340 | 4.4:-15193388 | MS.gene09012:CDS |
| GTTCTTTAAGGGAAAACTGA+GGG | 0.605683 | 4.4:+15193281 | None:intergenic |
| TTGACAATGTCTGCTGCTGT+AGG | 0.616083 | 4.4:-15193469 | None:intergenic |
| TCACCATTATATGCCAAGGA+AGG | 0.618936 | 4.4:-15192696 | MS.gene09012:CDS |
| CCTCTAGCAAACAAGCCTGA+AGG | 0.625848 | 4.4:+15192328 | None:intergenic |
| TATGTTGTTGGAGACAGTGA+AGG | 0.635616 | 4.4:+15192582 | None:intergenic |
| CAATGTTGTTTGGAAAACTG+GGG | 0.646093 | 4.4:-15192539 | MS.gene09012:CDS |
| AACCTACTCAGCAAGAACCA+AGG | 0.671480 | 4.4:-15192305 | MS.gene09012:CDS |
| TGTTCTTTAAGGGAAAACTG+AGG | 0.676471 | 4.4:+15193280 | None:intergenic |
| AATTTCAATCTGTCTCAGTG+TGG | 0.687125 | 4.4:+15191947 | None:intergenic |
| TGTCAACTATGATGATGCTG+AGG | 0.722211 | 4.4:-15193365 | MS.gene09012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTATTTTATT+TGG | - | chr4.4:15193350-15193369 | MS.gene09012:CDS | 0.0% |
| !!! | AATTTTGTTTTGTATTTTAA+AGG | - | chr4.4:15192256-15192275 | MS.gene09012:intron | 10.0% |
| !! | AAATTAAAACTAACAACAAA+CGG | + | chr4.4:15193337-15193356 | None:intergenic | 15.0% |
| !! | ATAAAAGAAGTCAATTAAAT+TGG | + | chr4.4:15192458-15192477 | None:intergenic | 15.0% |
| !! | TTATGAATTTATTGAAATAG+TGG | - | chr4.4:15192996-15193015 | MS.gene09012:intron | 15.0% |
| !! | TCAATTAAATTGGAAAAAGA+GGG | + | chr4.4:15192448-15192467 | None:intergenic | 20.0% |
| !!! | TTTAATTGACTTCTTTTATC+AGG | - | chr4.4:15192459-15192478 | MS.gene09012:intron | 20.0% |
| ! | AAACAACATTGGTATATTTG+AGG | + | chr4.4:15192876-15192895 | None:intergenic | 25.0% |
| ! | AGAAGAAAAACAAAATCGAA+AGG | + | chr4.4:15192359-15192378 | None:intergenic | 25.0% |
| ! | GTCAATTAAATTGGAAAAAG+AGG | + | chr4.4:15192449-15192468 | None:intergenic | 25.0% |
| ! | TCAAATATACCAATGTTGTT+TGG | - | chr4.4:15192875-15192894 | MS.gene09012:intron | 25.0% |
| ! | TCTAACTGAAACATAAATTG+AGG | + | chr4.4:15192929-15192948 | None:intergenic | 25.0% |
| ! | TCTTCCAATTCATATGTATA+TGG | + | chr4.4:15193066-15193085 | None:intergenic | 25.0% |
| ! | TGAAACTAACACATACTTAT+CGG | - | chr4.4:15193377-15193396 | MS.gene09012:CDS | 25.0% |
| ! | TGTTAATAAAAACAAGAACC+CGG | + | chr4.4:15192647-15192666 | None:intergenic | 25.0% |
| ! | TTTGAATTGTCTTAGTTATG+TGG | - | chr4.4:15192970-15192989 | MS.gene09012:intron | 25.0% |
| !!! | AGTAAGGTTCTTTTTTGAAA+TGG | - | chr4.4:15192182-15192201 | MS.gene09012:intron | 25.0% |
| !!! | CTTCTGAAACAATTCTTAAA+TGG | - | chr4.4:15192374-15192393 | MS.gene09012:CDS | 25.0% |
| !!! | GTAGTGTTTTTTTGATGAAT+TGG | - | chr4.4:15192232-15192251 | MS.gene09012:intron | 25.0% |
| AGCTTGAGAAAGATAAAGTA+AGG | - | chr4.4:15192166-15192185 | MS.gene09012:intron | 30.0% | |
| GGAACCATATACATATGAAT+TGG | - | chr4.4:15193059-15193078 | MS.gene09012:intron | 30.0% | |
| TTTCTCAAGCTGTTCTTTAA+GGG | + | chr4.4:15192157-15192176 | None:intergenic | 30.0% | |
| ! | ATAAGTTCCCAACATTTTCT+TGG | + | chr4.4:15193028-15193047 | None:intergenic | 30.0% |
| ! | ATTTTGTAAGTTTCTTGCCT+TGG | + | chr4.4:15193139-15193158 | None:intergenic | 30.0% |
| ! | CTCTCATCTTTTACATTTAC+AGG | - | chr4.4:15192498-15192517 | MS.gene09012:intron | 30.0% |
| AAAAAATCCTGATCGTGTCT+TGG | - | chr4.4:15192574-15192593 | MS.gene09012:CDS | 35.0% | |
| AAATGGAAAGAGCAACTTCT+AGG | - | chr4.4:15192296-15192315 | MS.gene09012:CDS | 35.0% | |
| ATGATGAAAGCTTGAGGAAA+TGG | - | chr4.4:15192279-15192298 | MS.gene09012:intron | 35.0% | |
| CAAAAACAAAGGAACCAACA+AGG | - | chr4.4:15192032-15192051 | MS.gene09012:intron | 35.0% | |
| CTTTCTCAAGCTGTTCTTTA+AGG | + | chr4.4:15192158-15192177 | None:intergenic | 35.0% | |
| GAAGAAGAAATTACTCCTTC+AGG | - | chr4.4:15193081-15193100 | MS.gene09012:intron | 35.0% | |
| GAGAACACCAAGAAAATGTT+GGG | - | chr4.4:15193018-15193037 | MS.gene09012:intron | 35.0% | |
| TAAAGGATGATGAAAGCTTG+AGG | - | chr4.4:15192273-15192292 | MS.gene09012:intron | 35.0% | |
| TCTCTACATCACAACAAGAT+AGG | + | chr4.4:15192678-15192697 | None:intergenic | 35.0% | |
| TGAATGGAATTGGCAAGATT+AGG | + | chr4.4:15192759-15192778 | None:intergenic | 35.0% | |
| TGTCAATGCTACACAAGTAA+CGG | + | chr4.4:15193193-15193212 | None:intergenic | 35.0% | |
| TGTTTCCTTCAATGCTCATT+TGG | - | chr4.4:15191999-15192018 | MS.gene09012:CDS | 35.0% | |
| ! | ACCAATGTTGTTTGGAAAAC+TGG | - | chr4.4:15192883-15192902 | MS.gene09012:intron | 35.0% |
| ! | AGCATTGAAGGAAACATCTT+TGG | + | chr4.4:15191995-15192014 | None:intergenic | 35.0% |
| ! | CAATGTTGTTTGGAAAACTG+GGG | - | chr4.4:15192885-15192904 | MS.gene09012:intron | 35.0% |
| ! | CCAATGTTGTTTGGAAAACT+GGG | - | chr4.4:15192884-15192903 | MS.gene09012:intron | 35.0% |
| ! | GGTTTGAGATTCAGAAGAAT+TGG | - | chr4.4:15193448-15193467 | MS.gene09012:CDS | 35.0% |
| ! | GTTCTTTAAGGGAAAACTGA+GGG | + | chr4.4:15192146-15192165 | None:intergenic | 35.0% |
| ! | TGTTCTTTAAGGGAAAACTG+AGG | + | chr4.4:15192147-15192166 | None:intergenic | 35.0% |
| !! | AGGAGAATTTTAGCCTGTAT+TGG | + | chr4.4:15192825-15192844 | None:intergenic | 35.0% |
| !!! | AAGACACGATCAGGATTTTT+TGG | + | chr4.4:15192575-15192594 | None:intergenic | 35.0% |
| !!! | AGGATTTTTTGGCCGAAATT+TGG | + | chr4.4:15192564-15192583 | None:intergenic | 35.0% |
| !!! | TTTTTTGGCCGAAATTTGGT+TGG | + | chr4.4:15192560-15192579 | None:intergenic | 35.0% |
| AACAAAGGAACCAACAAGGT+TGG | - | chr4.4:15192036-15192055 | MS.gene09012:intron | 40.0% | |
| AGATGAAGATGAAGAGGAAG+AGG | - | chr4.4:15192092-15192111 | MS.gene09012:intron | 40.0% | |
| ATAGTTGACACCAACCTTGT+TGG | + | chr4.4:15192049-15192068 | None:intergenic | 40.0% | |
| ATGTATATGGTTCCTGCTGT+GGG | + | chr4.4:15193053-15193072 | None:intergenic | 40.0% | |
| CAAGATTTGTCTGAATCGGT+TGG | - | chr4.4:15192606-15192625 | MS.gene09012:CDS | 40.0% | |
| CAGCATGTCCAACCAAATTT+CGG | - | chr4.4:15192549-15192568 | MS.gene09012:CDS | 40.0% | |
| CCAAGATCCAATTCCAACTT+AGG | + | chr4.4:15192123-15192142 | None:intergenic | 40.0% | |
| CGGTCAAGATTTGTCTGAAT+CGG | - | chr4.4:15192602-15192621 | MS.gene09012:CDS | 40.0% | |
| GCTACTTGGATGCTAGTTAT+AGG | - | chr4.4:15193427-15193446 | MS.gene09012:CDS | 40.0% | |
| GGAGAACACCAAGAAAATGT+TGG | - | chr4.4:15193017-15193036 | MS.gene09012:intron | 40.0% | |
| GTCTCCAACAACATAGTTTC+TGG | - | chr4.4:15192850-15192869 | MS.gene09012:intron | 40.0% | |
| TATGTATATGGTTCCTGCTG+TGG | + | chr4.4:15193054-15193073 | None:intergenic | 40.0% | |
| TATGTTGTTGGAGACAGTGA+AGG | + | chr4.4:15192845-15192864 | None:intergenic | 40.0% | |
| TCACCATTATATGCCAAGGA+AGG | - | chr4.4:15192728-15192747 | MS.gene09012:CDS | 40.0% | |
| TCAGACAAATCTTGACCGTT+AGG | + | chr4.4:15192600-15192619 | None:intergenic | 40.0% | |
| TCTTCCTCTTCATCTTCATC+TGG | + | chr4.4:15192093-15192112 | None:intergenic | 40.0% | |
| TGATGATCGCAAATGCTACT+TGG | - | chr4.4:15193413-15193432 | MS.gene09012:CDS | 40.0% | |
| TGCGATCATCATCTACAAAC+TGG | + | chr4.4:15193404-15193423 | None:intergenic | 40.0% | |
| TTCCTTCAATGCTCATTTGG+AGG | - | chr4.4:15192002-15192021 | MS.gene09012:CDS | 40.0% | |
| TTCCTTGGCATATAATGGTG+AGG | + | chr4.4:15192729-15192748 | None:intergenic | 40.0% | |
| ! | AAAGAGCATGTTCACTCTCA+AGG | - | chr4.4:15192792-15192811 | MS.gene09012:intron | 40.0% |
| ! | AGAGCAACTTCTAGGAAATG+TGG | - | chr4.4:15192304-15192323 | MS.gene09012:CDS | 40.0% |
| ! | CCCAGTTTTCCAAACAACAT+TGG | + | chr4.4:15192887-15192906 | None:intergenic | 40.0% |
| ! | CCTAAGTTGGAATTGGATCT+TGG | - | chr4.4:15192120-15192139 | MS.gene09012:intron | 40.0% |
| ! | GAGAGTGAACATGCTCTTTT+TGG | + | chr4.4:15192791-15192810 | None:intergenic | 40.0% |
| ! | GAGGAAGAGCACAAAAACAA+AGG | - | chr4.4:15192021-15192040 | MS.gene09012:intron | 40.0% |
| ! | GGAAGAACCTAAGTTGGAAT+TGG | - | chr4.4:15192113-15192132 | MS.gene09012:intron | 40.0% |
| ! | TGTCAACTATGATGATGCTG+AGG | - | chr4.4:15192059-15192078 | MS.gene09012:intron | 40.0% |
| !! | TTCCTCCAAATGAGCATTGA+AGG | + | chr4.4:15192007-15192026 | None:intergenic | 40.0% |
| !!! | CATGCTCTTTTTGGAATCAG+CGG | + | chr4.4:15192782-15192801 | None:intergenic | 40.0% |
| !!! | TTTTTGGAATCAGCGGTGAA+TGG | + | chr4.4:15192775-15192794 | None:intergenic | 40.0% |
| AACCTACTCAGCAAGAACCA+AGG | - | chr4.4:15193119-15193138 | MS.gene09012:CDS | 45.0% | |
| AATGTGGATGTGTCTGCTGT+TGG | - | chr4.4:15192320-15192339 | MS.gene09012:CDS | 45.0% | |
| AGCATGTTCACTCTCAAGGA+AGG | - | chr4.4:15192796-15192815 | MS.gene09012:intron | 45.0% | |
| AGCCTCACCATTATATGCCA+AGG | - | chr4.4:15192724-15192743 | MS.gene09012:CDS | 45.0% | |
| AGGCCTTCCTTGGCATATAA+TGG | + | chr4.4:15192734-15192753 | None:intergenic | 45.0% | |
| AGGCTCACTATCTTCACTTC+TGG | + | chr4.4:15192709-15192728 | None:intergenic | 45.0% | |
| CGAAATTTGGTTGGACATGC+TGG | + | chr4.4:15192551-15192570 | None:intergenic | 45.0% | |
| GAATCAGCGGTGAATGGAAT+TGG | + | chr4.4:15192769-15192788 | None:intergenic | 45.0% | |
| GAGGCCAGAAACTATGTTGT+TGG | + | chr4.4:15192857-15192876 | None:intergenic | 45.0% | |
| GGAAGAGGAAGAACCTAAGT+TGG | - | chr4.4:15192107-15192126 | MS.gene09012:intron | 45.0% | |
| GGAATTGGCAAGATTAGGTC+AGG | + | chr4.4:15192754-15192773 | None:intergenic | 45.0% | |
| GTTTGGAAAACTGGGGTTAG+AGG | - | chr4.4:15192892-15192911 | MS.gene09012:intron | 45.0% | |
| TCAAGGAAGGAAGCCAATAC+AGG | - | chr4.4:15192809-15192828 | MS.gene09012:intron | 45.0% | |
| TGTGCCAGATGAAGATGAAG+AGG | - | chr4.4:15192086-15192105 | MS.gene09012:intron | 45.0% | |
| AGATTAGGTCAGGCCTTCCT+TGG | + | chr4.4:15192744-15192763 | None:intergenic | 50.0% | |
| CCTCTAGCAAACAAGCCTGA+AGG | + | chr4.4:15193099-15193118 | None:intergenic | 50.0% | |
| CTGATCGTGTCTTGGCCTAA+CGG | - | chr4.4:15192582-15192601 | MS.gene09012:CDS | 50.0% | |
| GACATGCTGGACTGCTATAG+AGG | + | chr4.4:15192538-15192557 | None:intergenic | 50.0% | |
| TTGGCCTGCTATAGAGGATC+CGG | - | chr4.4:15192625-15192644 | MS.gene09012:CDS | 50.0% | |
| ! | CCTTCAGGCTTGTTTGCTAG+AGG | - | chr4.4:15193096-15193115 | MS.gene09012:intron | 50.0% |
| ! | TGCCTTGGTTCTTGCTGAGT+AGG | + | chr4.4:15193124-15193143 | None:intergenic | 50.0% |
| !! | AATCGGTTGGCCTGCTATAG+AGG | - | chr4.4:15192619-15192638 | MS.gene09012:CDS | 50.0% |
| CGTTAGGCCAAGACACGATC+AGG | + | chr4.4:15192584-15192603 | None:intergenic | 55.0% | |
| GAACCCGGATCCTCTATAGC+AGG | + | chr4.4:15192632-15192651 | None:intergenic | 55.0% | |
| GGGAACTTATAGCCCACAGC+AGG | - | chr4.4:15193038-15193057 | MS.gene09012:intron | 55.0% | |
| GTGGATGTGTCTGCTGTTGG+AGG | - | chr4.4:15192323-15192342 | MS.gene09012:CDS | 55.0% | |
| TGGCCTGCTATAGAGGATCC+GGG | - | chr4.4:15192626-15192645 | MS.gene09012:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15191961 | 15193485 | 15191961 | ID=MS.gene09012 |
| chr4.4 | mRNA | 15191961 | 15193485 | 15191961 | ID=MS.gene09012.t1;Parent=MS.gene09012 |
| chr4.4 | exon | 15193264 | 15193485 | 15193264 | ID=MS.gene09012.t1.exon1;Parent=MS.gene09012.t1 |
| chr4.4 | CDS | 15193264 | 15193485 | 15193264 | ID=cds.MS.gene09012.t1;Parent=MS.gene09012.t1 |
| chr4.4 | exon | 15193102 | 15193168 | 15193102 | ID=MS.gene09012.t1.exon2;Parent=MS.gene09012.t1 |
| chr4.4 | CDS | 15193102 | 15193168 | 15193102 | ID=cds.MS.gene09012.t1;Parent=MS.gene09012.t1 |
| chr4.4 | exon | 15192533 | 15192751 | 15192533 | ID=MS.gene09012.t1.exon3;Parent=MS.gene09012.t1 |
| chr4.4 | CDS | 15192533 | 15192751 | 15192533 | ID=cds.MS.gene09012.t1;Parent=MS.gene09012.t1 |
| chr4.4 | exon | 15192287 | 15192430 | 15192287 | ID=MS.gene09012.t1.exon4;Parent=MS.gene09012.t1 |
| chr4.4 | CDS | 15192287 | 15192430 | 15192287 | ID=cds.MS.gene09012.t1;Parent=MS.gene09012.t1 |
| chr4.4 | exon | 15191961 | 15192034 | 15191961 | ID=MS.gene09012.t1.exon5;Parent=MS.gene09012.t1 |
| chr4.4 | CDS | 15191961 | 15192034 | 15191961 | ID=cds.MS.gene09012.t1;Parent=MS.gene09012.t1 |
| Gene Sequence |
| Protein sequence |
