Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051687.t1 | XP_003589058.1 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 5.60E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051687.t1 | Q94JX5 | 85.4 | 185 | 26 | 1 | 1 | 185 | 1 | 184 | 3.3e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051687.t1 | B7FH07 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 4.1e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene051687.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene051687 | 0.817246 | 3.64E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene051746 | 0.807085 | 6.00E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene051885 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene052947 | 0.818041 | 2.41E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene055424 | 0.808916 | 2.45E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene055591 | -0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene056043 | -0.819165 | 1.34E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene056075 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene056830 | -0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene057094 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene058852 | 0.808654 | 2.78E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene059171 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene06001 | 0.849926 | 2.36E-60 | -1.69E-46 |
| MS.gene051687 | MS.gene062352 | 0.817501 | 3.19E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene066455 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene066953 | 0.804378 | 2.22E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene067157 | -0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene068925 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene069310 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene070251 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene072013 | 0.821749 | 3.42E-53 | -1.69E-46 |
| MS.gene051687 | MS.gene072057 | 0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene07222 | 0.820995 | 5.11E-53 | -1.69E-46 |
| MS.gene051687 | MS.gene073275 | 0.800617 | 1.33E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene073827 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene07388 | 0.817399 | 3.37E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene07719 | 0.807303 | 5.40E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene09012 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene051687 | MS.gene09236 | 0.826566 | 2.53E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene20061 | 0.84045 | 8.63E-58 | -1.69E-46 |
| MS.gene051687 | MS.gene20740 | 0.819201 | 1.32E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene21089 | 0.830779 | 2.42E-55 | -1.69E-46 |
| MS.gene051687 | MS.gene21219 | 0.83501 | 2.15E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene22436 | 0.843123 | 1.70E-58 | -1.69E-46 |
| MS.gene051687 | MS.gene24483 | 0.87746 | 6.17E-69 | -1.69E-46 |
| MS.gene051687 | MS.gene24847 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene051687 | MS.gene25077 | 0.807528 | 4.84E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene26979 | 0.815186 | 1.05E-51 | -1.69E-46 |
| MS.gene051687 | MS.gene27814 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene29053 | -0.800919 | 1.15E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene30904 | 0.82691 | 2.09E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene33907 | 0.81076 | 9.82E-51 | -1.69E-46 |
| MS.gene051687 | MS.gene36468 | 0.84155 | 4.44E-58 | -1.69E-46 |
| MS.gene051687 | MS.gene37990 | 0.804219 | 2.40E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene38293 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene38794 | 0.822848 | 1.90E-53 | -1.69E-46 |
| MS.gene051687 | MS.gene39131 | 0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene39207 | 0.818655 | 1.75E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene41870 | 0.823979 | 1.03E-53 | -1.69E-46 |
| MS.gene051687 | MS.gene42377 | 0.820906 | 5.35E-53 | -1.69E-46 |
| MS.gene051687 | MS.gene42871 | 0.800076 | 1.71E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene44141 | 0.82552 | 4.48E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene46069 | -0.826176 | 3.13E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene52644 | 0.82787 | 1.23E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene55732 | 0.846302 | 2.37E-59 | -1.69E-46 |
| MS.gene051687 | MS.gene56166 | 0.815136 | 1.08E-51 | -1.69E-46 |
| MS.gene051687 | MS.gene57609 | 0.82458 | 7.47E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene58227 | 0.849309 | 3.51E-60 | -1.69E-46 |
| MS.gene051687 | MS.gene58693 | 0.802625 | 5.13E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene60717 | 0.818294 | 2.11E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene63726 | 0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene66089 | 0.800144 | 1.65E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene66468 | 0.99582 | 3.02E-220 | -1.69E-46 |
| MS.gene051687 | MS.gene66818 | 0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene69262 | 0.808646 | 2.80E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene71830 | -0.810265 | 1.26E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene74948 | 0.834204 | 3.43E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene75171 | 0.816612 | 5.06E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene83218 | 0.80256 | 5.29E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene86678 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene88645 | 0.80486 | 1.76E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene88718 | 0.805885 | 1.08E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene89027 | 0.802117 | 6.53E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene89721 | 0.827623 | 1.41E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene91524 | 0.806289 | 8.84E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene92572 | 0.833821 | 4.28E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene98699 | 0.823687 | 1.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051687.t1 | MTR_1g017950 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 4.05e-146 | 404 |
| MS.gene051687.t1 | MTR_4g106800 | 66.857 | 175 | 57 | 1 | 2 | 176 | 3 | 176 | 1.70e-87 | 255 |
| MS.gene051687.t1 | MTR_3g070050 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 3.02e-70 | 212 |
| MS.gene051687.t1 | MTR_8g031490 | 50.820 | 183 | 83 | 3 | 1 | 182 | 1 | 177 | 2.64e-61 | 189 |
| MS.gene051687.t1 | MTR_8g097300 | 54.802 | 177 | 68 | 4 | 1 | 175 | 1 | 167 | 9.79e-61 | 188 |
| MS.gene051687.t1 | MTR_7g076720 | 50.857 | 175 | 82 | 2 | 1 | 175 | 1 | 171 | 3.28e-60 | 187 |
| MS.gene051687.t1 | MTR_3g070050 | 53.731 | 134 | 58 | 2 | 44 | 175 | 2 | 133 | 3.89e-45 | 146 |
| MS.gene051687.t1 | MTR_3g070050 | 47.826 | 69 | 36 | 0 | 3 | 71 | 61 | 129 | 1.42e-18 | 78.6 |
| MS.gene051687.t1 | MTR_1g106100 | 58.559 | 111 | 40 | 2 | 59 | 168 | 20 | 125 | 6.39e-38 | 128 |
| MS.gene051687.t1 | MTR_3g070033 | 66.038 | 53 | 18 | 0 | 123 | 175 | 6 | 58 | 3.58e-18 | 75.5 |
| MS.gene051687.t1 | MTR_3g070033 | 46.939 | 49 | 26 | 0 | 23 | 71 | 6 | 54 | 6.90e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051687.t1 | AT1G10200 | 85.246 | 183 | 27 | 0 | 1 | 183 | 1 | 183 | 2.62e-116 | 328 |
| MS.gene051687.t1 | AT1G10200 | 82.014 | 139 | 25 | 0 | 45 | 183 | 3 | 141 | 2.77e-82 | 241 |
| MS.gene051687.t1 | AT1G10200 | 44.444 | 72 | 40 | 0 | 3 | 74 | 61 | 132 | 2.24e-16 | 72.8 |
| MS.gene051687.t1 | AT2G39900 | 58.192 | 177 | 69 | 2 | 1 | 175 | 1 | 174 | 2.13e-69 | 210 |
| MS.gene051687.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene051687.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene051687.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene051687.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene051687.t1 | AT2G45800 | 50.000 | 186 | 86 | 2 | 1 | 183 | 1 | 182 | 3.75e-61 | 190 |
| MS.gene051687.t1 | AT1G01780 | 48.649 | 185 | 87 | 3 | 1 | 183 | 1 | 179 | 2.17e-60 | 187 |
| MS.gene051687.t1 | AT3G61230 | 47.917 | 192 | 93 | 3 | 2 | 190 | 3 | 190 | 8.55e-60 | 186 |
| MS.gene051687.t1 | AT3G61230 | 36.792 | 106 | 67 | 0 | 3 | 108 | 100 | 205 | 3.58e-17 | 76.6 |
| MS.gene051687.t1 | AT3G55770 | 46.479 | 213 | 70 | 3 | 1 | 175 | 1 | 207 | 1.60e-59 | 186 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 1.44e-15 | 72.8 |
| MS.gene051687.t1 | AT3G55770 | 48.201 | 139 | 61 | 3 | 1 | 135 | 1 | 132 | 2.16e-40 | 134 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.56e-17 | 74.3 |
| MS.gene051687.t1 | AT2G45800 | 45.455 | 154 | 76 | 3 | 34 | 184 | 4 | 152 | 4.96e-39 | 132 |
| MS.gene051687.t1 | AT2G45800 | 50.725 | 69 | 34 | 0 | 3 | 71 | 68 | 136 | 1.35e-16 | 74.7 |
| MS.gene051687.t1 | AT3G55770 | 48.462 | 130 | 57 | 2 | 1 | 126 | 1 | 124 | 1.92e-38 | 129 |
| MS.gene051687.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.92e-17 | 73.9 |
Find 36 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTATCTATATTTCTTTC+TGG | 0.117591 | 1.3:-4832133 | None:intergenic |
| TCCCTCATGGGCTATGTAAT+TGG | 0.293058 | 1.3:-4832700 | None:intergenic |
| AGCATTTGAAACAACTCTTA+TGG | 0.319973 | 1.3:-4832650 | None:intergenic |
| TTTATAAAGGTTACAGTGAA+TGG | 0.352930 | 1.3:+4832618 | MS.gene051687:intron |
| TTTGCTTGATCAGTTGAATA+TGG | 0.353364 | 1.3:-4832743 | None:intergenic |
| CTTGAGGCTTTAGCTGCTGC+AGG | 0.425078 | 1.3:-4832258 | None:intergenic |
| TATTCAACTGATCAAGCAAA+AGG | 0.432443 | 1.3:+4832746 | MS.gene051687:CDS |
| GCTAAAGCCTCAAGTATGTT+TGG | 0.441559 | 1.3:+4832267 | MS.gene051687:CDS |
| GACCAACTGTTCAAAAGAAC+TGG | 0.444337 | 1.3:+4831971 | MS.gene051687:CDS |
| ACACTAATTACCTTCTCTGT+TGG | 0.465114 | 1.3:-4832333 | None:intergenic |
| GGAAATTTGAGCCAGCTTGA+AGG | 0.475377 | 1.3:+4832768 | MS.gene051687:CDS |
| GGAACAAGGGACAAATGTTC+TGG | 0.477611 | 1.3:+4832291 | MS.gene051687:CDS |
| TCTCATGGTCACCTTCAAGC+TGG | 0.480325 | 1.3:-4832779 | None:intergenic |
| CAAGTATGTTTGGTGGAACA+AGG | 0.495604 | 1.3:+4832277 | MS.gene051687:CDS |
| TTGAAACAACTCTTATGGTA+AGG | 0.498185 | 1.3:-4832645 | None:intergenic |
| AGAAAGAAATATAGATAATG+AGG | 0.518674 | 1.3:+4832135 | MS.gene051687:CDS |
| CCTTGAGGGTTCCTTTGCAG+TGG | 0.520760 | 1.3:-4831493 | None:intergenic |
| GAGAGAGACATAGACCTTGA+GGG | 0.525903 | 1.3:-4831507 | None:intergenic |
| GACTAATAGTACACCCTCCA+TGG | 0.536605 | 1.3:-4832674 | None:intergenic |
| AGGAACAACTCAGAAGTGTA+TGG | 0.560932 | 1.3:+4831391 | MS.gene051687:CDS |
| ATTCAACTGATCAAGCAAAA+GGG | 0.562604 | 1.3:+4832747 | MS.gene051687:CDS |
| AGTTGTTTCAAATGCTGCCA+TGG | 0.564010 | 1.3:+4832657 | MS.gene051687:CDS |
| GACATCTGAAACAAGCTTTG+TGG | 0.565667 | 1.3:-4831469 | None:intergenic |
| TTGAACAGTTGGTCGAAGTG+TGG | 0.580292 | 1.3:-4831962 | None:intergenic |
| TTCAGATGTCACCACTGCAA+AGG | 0.582786 | 1.3:+4831482 | MS.gene051687:CDS |
| GCTTGATCAGTTGAATATGG+TGG | 0.582930 | 1.3:-4832740 | None:intergenic |
| AAAGCCTCAAGTATGTTTGG+TGG | 0.587944 | 1.3:+4832270 | MS.gene051687:CDS |
| TCCAATTACATAGCCCATGA+GGG | 0.590710 | 1.3:+4832699 | MS.gene051687:CDS |
| GTTTCAAATGCTGCCATGGA+GGG | 0.597804 | 1.3:+4832661 | MS.gene051687:CDS |
| TGTTCCACCAAACATACTTG+AGG | 0.606764 | 1.3:-4832274 | None:intergenic |
| AACAGTGTATCCAACAGAGA+AGG | 0.613878 | 1.3:+4832323 | MS.gene051687:CDS |
| TTCCAATTACATAGCCCATG+AGG | 0.614856 | 1.3:+4832698 | MS.gene051687:CDS |
| TCATGGGCTATGTAATTGGA+AGG | 0.623562 | 1.3:-4832696 | None:intergenic |
| AAGTATGTTTGGTGGAACAA+GGG | 0.641097 | 1.3:+4832278 | MS.gene051687:CDS |
| CCACTGCAAAGGAACCCTCA+AGG | 0.664342 | 1.3:+4831493 | MS.gene051687:CDS |
| TGTTTCAAATGCTGCCATGG+AGG | 0.668776 | 1.3:+4832660 | MS.gene051687:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTCAAAAATAATTTTGTT+CGG | - | chr1.3:4832483-4832502 | None:intergenic | 15.0% |
| !!! | TCAATAATTTGCATTTATAA+AGG | + | chr1.3:4832605-4832624 | MS.gene051687:intron | 15.0% |
| !! | AGAAAGAAATATAGATAATG+AGG | + | chr1.3:4832135-4832154 | MS.gene051687:CDS | 20.0% |
| !! | GTTCATTAACATGAAAATTA+CGG | - | chr1.3:4831807-4831826 | None:intergenic | 20.0% |
| !! | TCATTATCTATATTTCTTTC+TGG | - | chr1.3:4832136-4832155 | None:intergenic | 20.0% |
| !! | TTGTAGCTTCAATAAAATTA+CGG | - | chr1.3:4831671-4831690 | None:intergenic | 20.0% |
| ! | AAACAGCTCAAAAAATCATA+TGG | - | chr1.3:4832228-4832247 | None:intergenic | 25.0% |
| ! | AATGAACTTCTTTCATCATT+TGG | + | chr1.3:4831820-4831839 | MS.gene051687:intron | 25.0% |
| ! | AGGTAATGAATTCTAAATCT+AGG | + | chr1.3:4832155-4832174 | MS.gene051687:intron | 25.0% |
| ! | AGGTAATTAGTGTATATGTT+TGG | + | chr1.3:4832343-4832362 | MS.gene051687:intron | 25.0% |
| ! | CATAGCTTAAGTAAAAACTA+TGG | + | chr1.3:4831693-4831712 | MS.gene051687:intron | 25.0% |
| ! | GAAAATTGTTACTGCATATT+TGG | - | chr1.3:4831746-4831765 | None:intergenic | 25.0% |
| ! | TTTATAAAGGTTACAGTGAA+TGG | + | chr1.3:4832618-4832637 | MS.gene051687:intron | 25.0% |
| !! | AGTGTATATGTTTGGAATTA+CGG | + | chr1.3:4832351-4832370 | MS.gene051687:intron | 25.0% |
| !!! | AAGTTTTGTATTCAACATCA+GGG | - | chr1.3:4832567-4832586 | None:intergenic | 25.0% |
| !!! | ACTTTTGTTTTGCATACATA+GGG | + | chr1.3:4832092-4832111 | MS.gene051687:intron | 25.0% |
| !!! | TAAGTTTTGTATTCAACATC+AGG | - | chr1.3:4832568-4832587 | None:intergenic | 25.0% |
| !!! | TACTTTTGTTTTGCATACAT+AGG | + | chr1.3:4832091-4832110 | MS.gene051687:intron | 25.0% |
| !!! | TTTTGAGTTTGTGATTAGTT+TGG | + | chr1.3:4832494-4832513 | MS.gene051687:intron | 25.0% |
| AAAAATGCTGGGAAAATCAA+TGG | + | chr1.3:4832801-4832820 | MS.gene051687:CDS | 30.0% | |
| ACCAAAAAGAAATGTCTAAG+AGG | - | chr1.3:4831537-4831556 | None:intergenic | 30.0% | |
| ATTCAACTGATCAAGCAAAA+GGG | + | chr1.3:4832747-4832766 | MS.gene051687:CDS | 30.0% | |
| CATTAACATGAAAATTACGG+TGG | - | chr1.3:4831804-4831823 | None:intergenic | 30.0% | |
| TATTCAACTGATCAAGCAAA+AGG | + | chr1.3:4832746-4832765 | MS.gene051687:CDS | 30.0% | |
| TGAAAATGCTTATGAACAAC+TGG | - | chr1.3:4831774-4831793 | None:intergenic | 30.0% | |
| TTACTGCATATTTGGATTCA+CGG | - | chr1.3:4831738-4831757 | None:intergenic | 30.0% | |
| TTGAAACAACTCTTATGGTA+AGG | - | chr1.3:4832648-4832667 | None:intergenic | 30.0% | |
| TTTGCTTGATCAGTTGAATA+TGG | - | chr1.3:4832746-4832765 | None:intergenic | 30.0% | |
| ! | AAGCAACTACAATTCTTTTG+AGG | + | chr1.3:4831922-4831941 | MS.gene051687:CDS | 30.0% |
| ! | ACCTCTTAGACATTTCTTTT+TGG | + | chr1.3:4831533-4831552 | MS.gene051687:intron | 30.0% |
| ! | AGCAACTACAATTCTTTTGA+GGG | + | chr1.3:4831923-4831942 | MS.gene051687:CDS | 30.0% |
| ! | AGCATTTGAAACAACTCTTA+TGG | - | chr1.3:4832653-4832672 | None:intergenic | 30.0% |
| ! | TTCTTTCATCATTTGGCTTA+TGG | + | chr1.3:4831827-4831846 | MS.gene051687:intron | 30.0% |
| !! | AAAAGCTTTGAAGGTAACAA+AGG | + | chr1.3:4832004-4832023 | MS.gene051687:intron | 30.0% |
| !!! | CTTTCTGGTTTGACAATTTT+TGG | - | chr1.3:4832121-4832140 | None:intergenic | 30.0% |
| !!! | TACCTTCAAAGCTTTTTTCA+AGG | - | chr1.3:4832000-4832019 | None:intergenic | 30.0% |
| !!! | TGTAGCCTTTTCTAAAATCA+TGG | + | chr1.3:4832424-4832443 | MS.gene051687:intron | 30.0% |
| ACACTAATTACCTTCTCTGT+TGG | - | chr1.3:4832336-4832355 | None:intergenic | 35.0% | |
| CTAACAGATCCAATACTAGA+AGG | - | chr1.3:4831583-4831602 | None:intergenic | 35.0% | |
| ! | AAGTATGTTTGGTGGAACAA+GGG | + | chr1.3:4832278-4832297 | MS.gene051687:CDS | 35.0% |
| ! | AGCCTTGAAAAAAGCTTTGA+AGG | + | chr1.3:4831995-4832014 | MS.gene051687:CDS | 35.0% |
| ! | CTAGTTTAGCCTTCTAGTAT+TGG | + | chr1.3:4831571-4831590 | MS.gene051687:intron | 35.0% |
| ! | TACCAGTTCTTTTGAACAGT+TGG | - | chr1.3:4831976-4831995 | None:intergenic | 35.0% |
| ! | TTTCATCATTTGGCTTATGG+AGG | + | chr1.3:4831830-4831849 | MS.gene051687:intron | 35.0% |
| ! | TTTTCCCAGCATTTTTCTCA+TGG | - | chr1.3:4832797-4832816 | None:intergenic | 35.0% |
| !! | CGGCTAGTTTAACAATATCA+CGG | + | chr1.3:4832371-4832390 | MS.gene051687:intron | 35.0% |
| !! | GTCCACCATGATTTTAGAAA+AGG | - | chr1.3:4832432-4832451 | None:intergenic | 35.0% |
| !!! | AGCCTTTTCTAAAATCATGG+TGG | + | chr1.3:4832427-4832446 | MS.gene051687:intron | 35.0% |
| AAAGCCTCAAGTATGTTTGG+TGG | + | chr1.3:4832270-4832289 | MS.gene051687:CDS | 40.0% | |
| AACAGTGTATCCAACAGAGA+AGG | + | chr1.3:4832323-4832342 | MS.gene051687:CDS | 40.0% | |
| GACCAACTGTTCAAAAGAAC+TGG | + | chr1.3:4831971-4831990 | MS.gene051687:CDS | 40.0% | |
| GCTAAAGCCTCAAGTATGTT+TGG | + | chr1.3:4832267-4832286 | MS.gene051687:CDS | 40.0% | |
| GCTTGATCAGTTGAATATGG+TGG | - | chr1.3:4832743-4832762 | None:intergenic | 40.0% | |
| GTGACCATGAGAAAAATGCT+GGG | + | chr1.3:4832790-4832809 | MS.gene051687:CDS | 40.0% | |
| GTTCGGATTTGTGATGAGTT+TGG | - | chr1.3:4832466-4832485 | None:intergenic | 40.0% | |
| TCCAATTACATAGCCCATGA+GGG | + | chr1.3:4832699-4832718 | MS.gene051687:CDS | 40.0% | |
| TGCAACTTTCGCCAAAATCA+CGG | - | chr1.3:4832538-4832557 | None:intergenic | 40.0% | |
| TGTTCCACCAAACATACTTG+AGG | - | chr1.3:4832277-4832296 | None:intergenic | 40.0% | |
| TTCCAATTACATAGCCCATG+AGG | + | chr1.3:4832698-4832717 | MS.gene051687:CDS | 40.0% | |
| ! | AGGAACAACTCAGAAGTGTA+TGG | + | chr1.3:4831391-4831410 | MS.gene051687:CDS | 40.0% |
| ! | AGTTGTTTCAAATGCTGCCA+TGG | + | chr1.3:4832657-4832676 | MS.gene051687:CDS | 40.0% |
| ! | CAAGTATGTTTGGTGGAACA+AGG | + | chr1.3:4832277-4832296 | MS.gene051687:CDS | 40.0% |
| ! | GACATCTGAAACAAGCTTTG+TGG | - | chr1.3:4831472-4831491 | None:intergenic | 40.0% |
| ! | TCATGGGCTATGTAATTGGA+AGG | - | chr1.3:4832699-4832718 | None:intergenic | 40.0% |
| GACTAATAGTACACCCTCCA+TGG | - | chr1.3:4832677-4832696 | None:intergenic | 45.0% | |
| GAGAGAGACATAGACCTTGA+GGG | - | chr1.3:4831510-4831529 | None:intergenic | 45.0% | |
| GATGAGTTTGGCAGAATCTG+TGG | - | chr1.3:4832454-4832473 | None:intergenic | 45.0% | |
| GGAAATTTGAGCCAGCTTGA+AGG | + | chr1.3:4832768-4832787 | MS.gene051687:CDS | 45.0% | |
| GGAACAAGGGACAAATGTTC+TGG | + | chr1.3:4832291-4832310 | MS.gene051687:CDS | 45.0% | |
| GGTGACCATGAGAAAAATGC+TGG | + | chr1.3:4832789-4832808 | MS.gene051687:CDS | 45.0% | |
| GTTTCAAATGCTGCCATGGA+GGG | + | chr1.3:4832661-4832680 | MS.gene051687:CDS | 45.0% | |
| TGAGAGAGACATAGACCTTG+AGG | - | chr1.3:4831511-4831530 | None:intergenic | 45.0% | |
| TGTTTCAAATGCTGCCATGG+AGG | + | chr1.3:4832660-4832679 | MS.gene051687:CDS | 45.0% | |
| TTCAGATGTCACCACTGCAA+AGG | + | chr1.3:4831482-4831501 | MS.gene051687:CDS | 45.0% | |
| TTGAACAGTTGGTCGAAGTG+TGG | - | chr1.3:4831965-4831984 | None:intergenic | 45.0% | |
| ! | GCAGTAGAGTTTTCCCTCAT+GGG | - | chr1.3:4832715-4832734 | None:intergenic | 45.0% |
| ! | TCATTGTGCGACCGTGATTT+TGG | + | chr1.3:4832524-4832543 | MS.gene051687:intron | 45.0% |
| ! | TCCCTCATGGGCTATGTAAT+TGG | - | chr1.3:4832703-4832722 | None:intergenic | 45.0% |
| ! | TGCAGTAGAGTTTTCCCTCA+TGG | - | chr1.3:4832716-4832735 | None:intergenic | 45.0% |
| TCTCATGGTCACCTTCAAGC+TGG | - | chr1.3:4832782-4832801 | None:intergenic | 50.0% | |
| CCACTGCAAAGGAACCCTCA+AGG | + | chr1.3:4831493-4831512 | MS.gene051687:CDS | 55.0% | |
| CCTTGAGGGTTCCTTTGCAG+TGG | - | chr1.3:4831496-4831515 | None:intergenic | 55.0% | |
| ! | CTTGAGGCTTTAGCTGCTGC+AGG | - | chr1.3:4832261-4832280 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 4831380 | 4832848 | 4831380 | ID=MS.gene051687 |
| chr1.3 | mRNA | 4831380 | 4832848 | 4831380 | ID=MS.gene051687.t1;Parent=MS.gene051687 |
| chr1.3 | exon | 4831380 | 4831514 | 4831380 | ID=MS.gene051687.t1.exon1;Parent=MS.gene051687.t1 |
| chr1.3 | CDS | 4831380 | 4831514 | 4831380 | ID=cds.MS.gene051687.t1;Parent=MS.gene051687.t1 |
| chr1.3 | exon | 4831920 | 4832016 | 4831920 | ID=MS.gene051687.t1.exon2;Parent=MS.gene051687.t1 |
| chr1.3 | CDS | 4831920 | 4832016 | 4831920 | ID=cds.MS.gene051687.t1;Parent=MS.gene051687.t1 |
| chr1.3 | exon | 4832113 | 4832156 | 4832113 | ID=MS.gene051687.t1.exon3;Parent=MS.gene051687.t1 |
| chr1.3 | CDS | 4832113 | 4832156 | 4832113 | ID=cds.MS.gene051687.t1;Parent=MS.gene051687.t1 |
| chr1.3 | exon | 4832255 | 4832344 | 4832255 | ID=MS.gene051687.t1.exon4;Parent=MS.gene051687.t1 |
| chr1.3 | CDS | 4832255 | 4832344 | 4832255 | ID=cds.MS.gene051687.t1;Parent=MS.gene051687.t1 |
| chr1.3 | exon | 4832627 | 4832848 | 4832627 | ID=MS.gene051687.t1.exon5;Parent=MS.gene051687.t1 |
| chr1.3 | CDS | 4832627 | 4832848 | 4832627 | ID=cds.MS.gene051687.t1;Parent=MS.gene051687.t1 |
| Gene Sequence |
| Protein sequence |
