AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09269

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09269.t1 MTR_8g083100 98.563 487 7 0 1 487 1 487 0.0 996
MS.gene09269.t1 MTR_2g100680 74.831 445 109 2 1 444 12 454 0.0 680
MS.gene09269.t1 MTR_6g043060 85.616 292 42 0 1 292 1 292 0.0 516
MS.gene09269.t1 MTR_6g043060 75.556 45 11 0 412 456 284 328 1.32e-14 75.1
MS.gene09269.t1 MTR_2g100670 68.792 298 73 3 1 297 14 292 5.30e-138 400
MS.gene09269.t1 MTR_2g100670 68.792 298 73 3 1 297 122 400 7.18e-136 399
MS.gene09269.t1 MTR_6g044340 62.069 232 46 2 68 299 8 197 2.96e-88 271
MS.gene09269.t1 MTR_6g044340 75.000 72 18 0 386 457 192 263 1.88e-27 111
MS.gene09269.t1 MTR_5g029680 50.935 214 91 4 19 218 29 242 1.02e-64 218
MS.gene09269.t1 MTR_8g087540 51.905 210 90 4 13 217 4 207 3.75e-63 211
MS.gene09269.t1 MTR_6g044430 62.245 196 24 3 100 295 14 159 4.36e-63 205
MS.gene09269.t1 MTR_6g044430 55.372 121 44 3 346 457 110 229 2.86e-26 107
MS.gene09269.t1 MTR_4g077970 46.860 207 98 3 22 216 12 218 7.36e-56 194
MS.gene09269.t1 MTR_6g044440 75.397 126 18 1 174 299 1 113 1.69e-53 178
MS.gene09269.t1 MTR_6g044440 75.000 72 18 0 386 457 108 179 2.42e-28 111
MS.gene09269.t1 MTR_1g102860 46.117 206 99 5 19 215 37 239 4.06e-51 177
MS.gene09269.t1 MTR_7g095680 46.411 209 102 4 19 217 46 254 4.62e-51 177
MS.gene09269.t1 MTR_6g055650 80.000 105 17 1 220 324 49 149 7.11e-49 165
MS.gene09269.t1 MTR_3g104550 44.390 205 104 5 19 216 43 244 1.05e-48 172
MS.gene09269.t1 MTR_1g071360 44.633 177 90 2 20 195 30 199 1.46e-46 165
MS.gene09269.t1 MTR_6g055660 84.270 89 14 0 264 352 1 89 1.85e-46 156
MS.gene09269.t1 MTR_1g061170 34.528 307 190 7 22 323 49 349 2.16e-46 167
MS.gene09269.t1 MTR_1g071360 44.633 177 90 2 20 195 27 196 2.78e-46 165
MS.gene09269.t1 MTR_8g105780 48.969 194 86 6 21 201 21 214 3.25e-44 159
MS.gene09269.t1 MTR_3g101870 72.340 94 26 0 20 113 22 115 2.05e-43 157
MS.gene09269.t1 MTR_6g044350 61.538 143 24 3 174 310 1 118 2.26e-42 147
MS.gene09269.t1 MTR_6g044350 78.571 42 9 0 402 443 105 146 1.17e-15 74.3
MS.gene09269.t1 MTR_2g017890 62.037 108 41 0 12 119 5 112 4.06e-42 154
MS.gene09269.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 7.07e-42 153
MS.gene09269.t1 MTR_5g017470 61.538 104 40 0 19 122 6 109 3.27e-41 149
MS.gene09269.t1 MTR_5g089170 69.149 94 29 0 20 113 23 116 5.32e-41 147
MS.gene09269.t1 MTR_6g086805 39.286 224 103 4 21 230 10 214 1.25e-40 149
MS.gene09269.t1 MTR_0020s0020 63.830 94 34 0 20 113 31 124 5.61e-38 142
MS.gene09269.t1 MTR_1g100777 60.417 96 38 0 20 115 16 111 3.58e-37 139
MS.gene09269.t1 MTR_7g091370 51.327 113 55 0 1 113 1 113 6.61e-36 133
MS.gene09269.t1 MTR_4g088900 57.143 98 38 1 20 113 31 128 3.18e-33 125
MS.gene09269.t1 MTR_6g044500 68.421 95 11 1 205 299 1 76 7.94e-33 120
MS.gene09269.t1 MTR_6g044510 82.759 58 10 0 400 457 31 88 3.75e-25 99.4
MS.gene09269.t1 MTR_6g044510 68.085 47 14 1 264 310 1 46 4.43e-11 59.7
MS.gene09269.t1 MTR_5g047190 50.515 97 41 2 30 119 1 97 2.18e-24 97.4
MS.gene09269.t1 MTR_4g045757 67.241 58 19 0 22 79 14 71 3.88e-20 85.1
MS.gene09269.t1 MTR_1g061170 27.239 268 176 9 61 323 1 254 2.59e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09269.t1 AT4G13980 51.107 497 202 10 1 487 1 466 5.69e-145 424
MS.gene09269.t1 AT1G32330 47.660 235 104 5 1 216 16 250 7.53e-61 207
MS.gene09269.t1 AT1G32330 47.660 235 104 5 1 216 16 250 8.32e-61 207
MS.gene09269.t1 AT4G17750 46.352 233 104 4 5 216 35 267 5.16e-60 205
MS.gene09269.t1 AT5G16820 50.000 210 90 5 22 217 27 235 2.65e-58 200
MS.gene09269.t1 AT5G16820 50.000 210 90 5 22 217 27 235 2.65e-58 200
MS.gene09269.t1 AT3G02990 46.119 219 105 4 22 228 23 240 1.95e-57 197
MS.gene09269.t1 AT4G18880 51.643 213 93 3 14 220 7 215 1.61e-55 191
MS.gene09269.t1 AT3G22830 43.662 213 106 4 19 217 58 270 3.38e-50 176
MS.gene09269.t1 AT2G26150 43.243 222 118 4 19 232 41 262 6.62e-50 174
MS.gene09269.t1 AT2G26150 43.243 222 118 4 19 232 41 262 6.62e-50 174
MS.gene09269.t1 AT5G45710 46.296 216 101 4 14 224 6 211 1.75e-49 173
MS.gene09269.t1 AT5G45710 46.296 216 101 4 14 224 6 211 1.75e-49 173
MS.gene09269.t1 AT3G51910 43.478 207 101 4 14 215 21 216 9.69e-48 166
MS.gene09269.t1 AT5G43840 45.745 188 90 3 20 205 17 194 9.88e-46 161
MS.gene09269.t1 AT5G03720 45.556 180 95 2 22 198 55 234 4.95e-45 163
MS.gene09269.t1 AT5G03720 45.556 180 95 2 22 198 55 234 4.95e-45 163
MS.gene09269.t1 AT1G46264 60.504 119 37 1 14 122 26 144 5.69e-44 158
MS.gene09269.t1 AT1G67970 45.550 191 91 5 21 201 18 205 1.67e-43 158
MS.gene09269.t1 AT3G24520 44.809 183 78 4 21 202 16 176 6.60e-43 155
MS.gene09269.t1 AT3G63350 37.447 235 132 3 5 227 3 234 1.54e-42 152
MS.gene09269.t1 AT5G54070 42.029 207 109 3 18 218 67 268 2.17e-42 154
MS.gene09269.t1 AT5G62020 52.101 119 56 1 1 118 1 119 5.89e-38 140
MS.gene09269.t1 AT4G11660 62.766 94 35 0 20 113 57 150 2.84e-37 141
MS.gene09269.t1 AT4G36990 60.417 96 38 0 20 115 12 107 5.34e-37 138
MS.gene09269.t1 AT2G41690 53.846 117 54 0 20 136 38 154 1.10e-36 135
MS.gene09269.t1 AT4G18870 47.368 95 49 1 15 109 6 99 3.86e-21 94.0
MS.gene09269.t1 AT4G18870 45.455 88 48 0 22 109 146 233 6.11e-21 93.6
MS.gene09269.t1 AT1G77570 42.222 90 49 2 23 109 27 116 7.37e-18 80.9
MS.gene09269.t1 AT2G26150 35.664 143 84 4 82 216 49 191 1.71e-16 80.5
MS.gene09269.t1 AT2G26150 35.664 143 84 4 82 216 49 191 1.71e-16 80.5

Find 131 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCAATGCTGCCCTTTC+TGG -0.033953 4.1:+14522582 None:intergenic
CAATTTCCTGACAGTTTATT+TGG 0.134687 4.1:+14521842 None:intergenic
ATCCATGTTCTTGATGTTAA+TGG 0.154738 4.1:+14521537 None:intergenic
TCTGCAAGGTCTAGTGTTTC+AGG 0.179480 4.1:+14522057 None:intergenic
AGCAATTTCAGACTGGAATT+TGG 0.185327 4.1:-14522261 MS.gene09269:CDS
CCTTCTTCTTGCTCACTATT+TGG 0.197563 4.1:+14521580 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 4.1:-14522415 MS.gene09269:CDS
CAAATAAACTGTCAGGAAAT+TGG 0.249049 4.1:-14521841 MS.gene09269:CDS
GGCTCCAGAGAATGAAGATT+TGG 0.274713 4.1:+14521967 None:intergenic
ACACTAGACCTTGCAGATAC+TGG 0.281618 4.1:-14522051 MS.gene09269:CDS
CTGTCAGGAAATTGGCAATT+TGG 0.285988 4.1:-14521833 MS.gene09269:CDS
GAAATTGTTGTGCTTGAAAT+AGG 0.289577 4.1:+14524451 None:intergenic
AATTTCCTGACAGTTTATTT+GGG 0.297215 4.1:+14521843 None:intergenic
ATAACAAAAGCTTCATTGTT+TGG 0.304742 4.1:-14524508 MS.gene09269:CDS
ACGGGGTGAATGATGTGTTT+TGG 0.315138 4.1:-14521672 MS.gene09269:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 4.1:-14524538 MS.gene09269:CDS
GCAATTTCAGACTGGAATTT+GGG 0.327997 4.1:-14522260 MS.gene09269:CDS
GATGGTAAAGAATCTGAAAT+TGG 0.330710 4.1:-14521790 MS.gene09269:CDS
CTTGTACATTGGAATTCAAT+AGG 0.346549 4.1:-14521888 MS.gene09269:CDS
AGAAGAACACGGGAGAATTC+AGG 0.363985 4.1:+14524479 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.364324 4.1:-14522364 MS.gene09269:CDS
AACTCTGGCATCTTGTACAT+TGG 0.365517 4.1:-14521899 MS.gene09269:CDS
CTATCACCTTCTTCAGTACT+TGG 0.371141 4.1:+14521946 None:intergenic
GAAGAAGGGCGGTCAGTTCA+TGG 0.385884 4.1:-14521565 MS.gene09269:CDS
ATTAGCCACATTTCGGTTTG+TGG 0.388053 4.1:+14521762 None:intergenic
TCAGATATGAACTTGATATC+AGG 0.394555 4.1:-14522180 MS.gene09269:CDS
ATTTGGAATTGCTCGATAGT+TGG 0.404937 4.1:+14521597 None:intergenic
TAGCCTCATTAGCCACATTT+CGG 0.405235 4.1:+14521755 None:intergenic
TCAAAGCTGCTGCTCGGCAC+GGG 0.408584 4.1:-14521690 MS.gene09269:CDS
ACAGGAATGCAGACAAGAAC+TGG 0.408767 4.1:-14522093 MS.gene09269:CDS
GCTCCAGAGAATGAAGATTT+GGG 0.410466 4.1:+14521968 None:intergenic
CACTAGACCTTGCAGATACT+GGG 0.411215 4.1:-14522050 MS.gene09269:CDS
GCCGCTGCCGCCGGAGGAAG+CGG 0.414745 4.1:-14524614 MS.gene09269:CDS
CGGAGGAAGCGGAGGAGGTC+CGG 0.415280 4.1:-14524603 MS.gene09269:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 4.1:+14522294 None:intergenic
CAGAGTTAAATTTAGTTGGC+AGG 0.423956 4.1:+14521915 None:intergenic
AGCTTAAGAGCTTGGATTGA+AGG 0.426622 4.1:+14522526 None:intergenic
GTGCCCAAATCTTCATTCTC+TGG 0.429020 4.1:-14521971 MS.gene09269:CDS
ACGTTACCTGAAGCCTCCTT+TGG 0.431681 4.1:+14521718 None:intergenic
ATGCCAGAGTTAAATTTAGT+TGG 0.435087 4.1:+14521911 None:intergenic
TCCGCTTCCTCCGGCGGCAG+CGG 0.440478 4.1:+14524613 None:intergenic
ATAACTGTAGCTTAAGAGCT+TGG 0.443695 4.1:+14522518 None:intergenic
GCCGAGCAGCAGCTTTGACT+TGG 0.452625 4.1:+14521695 None:intergenic
TAAGAAAAGGCGATTGCCTC+AGG 0.456333 4.1:-14522331 MS.gene09269:CDS
TGGCAGCTTATAATAAGAAA+AGG 0.461564 4.1:-14522344 MS.gene09269:CDS
TTACCTGAAGCCTCCTTTGG+TGG 0.465202 4.1:+14521721 None:intergenic
GCTCCACCAAAGGAGGCTTC+AGG 0.466668 4.1:-14521724 MS.gene09269:CDS
GCCGCCGGAGGAAGCGGAGG+AGG 0.467841 4.1:-14524608 MS.gene09269:CDS
AAAAGCAGATCCTGAGCGTT+GGG 0.472666 4.1:-14522712 MS.gene09269:CDS
CCCAAGACAGCATGCTCAAA+GGG 0.473933 4.1:+14521507 None:intergenic
TCCTCATCAGCCGCTGCCGC+CGG 0.477669 4.1:-14524623 MS.gene09269:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.478636 4.1:-14522370 MS.gene09269:CDS
TCACAGTCATAGTCATCCTC+CGG 0.482739 4.1:-14522619 MS.gene09269:CDS
CCAAATAGTGAGCAAGAAGA+AGG 0.485282 4.1:-14521580 MS.gene09269:CDS
GGATGACTATGACTGTGAAT+AGG 0.487235 4.1:+14522624 None:intergenic
GTCGCCCCAAATAAACTGTC+AGG 0.490553 4.1:-14521848 MS.gene09269:CDS
AATTCCAGTCTGAAATTGCT+AGG 0.494876 4.1:+14522264 None:intergenic
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 4.1:-14522586 MS.gene09269:CDS
TGTTGTGCTTGAAATAGGTT+GGG 0.496826 4.1:+14524456 None:intergenic
ACAGTTTATTTGGGGCGACC+TGG 0.496979 4.1:+14521852 None:intergenic
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 4.1:-14522493 MS.gene09269:CDS
CTGCCAACTAAATTTAACTC+TGG 0.500806 4.1:-14521914 MS.gene09269:CDS
AAACCGAAATGTGGCTAATG+AGG 0.502956 4.1:-14521758 MS.gene09269:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 4.1:+14524427 None:intergenic
GTCAAAGCTGCTGCTCGGCA+CGG 0.509514 4.1:-14521691 MS.gene09269:CDS
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 4.1:-14522424 MS.gene09269:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 4.1:-14522295 MS.gene09269:CDS
TCCGGCGGCAGCGGCTGATG+AGG 0.511352 4.1:+14524622 None:intergenic
TTGTTGTGCTTGAAATAGGT+TGG 0.514168 4.1:+14524455 None:intergenic
CTGCAAGGTCTAGTGTTTCA+GGG 0.517628 4.1:+14522058 None:intergenic
ATAGGAATTCATACTCGGCC+AGG 0.518045 4.1:-14521870 MS.gene09269:CDS
TCTTCATTGTCTGAACAGCC+TGG 0.518791 4.1:+14521628 None:intergenic
TTGGCAAACTCCCAACGCTC+AGG 0.519786 4.1:+14522702 None:intergenic
AACAGCCTGGTCTTTCAGTA+AGG 0.527046 4.1:+14521641 None:intergenic
AGTTTATTTGAGATATCTTG+AGG 0.532987 4.1:+14522228 None:intergenic
GCTTAAGAGCTTGGATTGAA+GGG 0.534276 4.1:+14522527 None:intergenic
ATTATAAGCTGCCAAATCCA+TGG 0.537709 4.1:+14522353 None:intergenic
GTTTATTTGAGATATCTTGA+GGG 0.542382 4.1:+14522229 None:intergenic
TCATACGTCTTCTGAAGAAA+CGG 0.543831 4.1:+14524578 None:intergenic
CTCCATTAACATCAAGAACA+TGG 0.545248 4.1:-14521539 MS.gene09269:CDS
GAAAAGCAGATCCTGAGCGT+TGG 0.545857 4.1:-14522713 MS.gene09269:CDS
CTGTCTGAAGGAGAACTGAC+AGG 0.546477 4.1:-14522111 MS.gene09269:CDS
CAATCCTAGCAATTTCAGAC+TGG 0.548773 4.1:-14522268 MS.gene09269:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 4.1:-14522463 MS.gene09269:CDS
ATTGTCAACCAAGCTACCTT+CGG 0.550180 4.1:+14522287 None:intergenic
CAAAGCTGCTGCTCGGCACG+GGG 0.552279 4.1:-14521689 MS.gene09269:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 4.1:-14522618 MS.gene09269:CDS
CGGACCTCCTCCGCTTCCTC+CGG 0.560425 4.1:+14524604 None:intergenic
GAGTCAAGAGTTAACGCTGA+TGG 0.561131 4.1:-14521808 MS.gene09269:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 4.1:-14522595 MS.gene09269:CDS
CTGGAGCCAAGTACTGAAGA+AGG 0.565718 4.1:-14521952 MS.gene09269:CDS
TTCTGAAGAATATACACCGC+AGG 0.566868 4.1:-14522650 MS.gene09269:CDS
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 4.1:-14522596 MS.gene09269:CDS
GCTGCCGCCGGAGGAAGCGG+AGG 0.569858 4.1:-14524611 MS.gene09269:CDS
TCATCAGCCGCTGCCGCCGG+AGG 0.573945 4.1:-14524620 MS.gene09269:CDS
AAGTTCATATCTGAGACAGC+TGG 0.576214 4.1:+14522189 None:intergenic
ACCTCCTCCGCTTCCTCCGG+CGG 0.590329 4.1:+14524607 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 4.1:-14522455 MS.gene09269:CDS
CAATCTAGCTCCACCAAAGG+AGG 0.593167 4.1:-14521731 MS.gene09269:CDS
CACGTGCAGCCTGTTGCCGA+AGG 0.594030 4.1:-14522303 MS.gene09269:CDS
GCAGCGGCTGATGAGGATTG+TGG 0.595315 4.1:+14524629 None:intergenic
GTCTTCTGAAGAAACGGTGC+CGG 0.596431 4.1:+14524584 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 4.1:+14524417 None:intergenic
TCCAAGTCAAAGCTGCTGCT+CGG 0.603523 4.1:-14521696 MS.gene09269:CDS
CAAATAGTGAGCAAGAAGAA+GGG 0.604496 4.1:-14521579 MS.gene09269:CDS
ATTTCCTGACAGTTTATTTG+GGG 0.606554 4.1:+14521844 None:intergenic
AATAGGTTGGGAGAAGAACA+CGG 0.613461 4.1:+14524468 None:intergenic
TCTGGATCTACAGCAGAACC+CGG 0.614712 4.1:+14522600 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.614963 4.1:+14524541 None:intergenic
AGTTTCCACAAACCGAAATG+TGG 0.624523 4.1:-14521767 MS.gene09269:CDS
GTGTTTCAGGGGTAAAAGCA+AGG 0.625370 4.1:+14522070 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 4.1:+14524538 None:intergenic
TTGATATCAGGTAGCACACA+GGG 0.633161 4.1:-14522168 MS.gene09269:CDS
ACAGGGTTCAAACGAAGATG+AGG 0.634687 4.1:-14522151 MS.gene09269:CDS
TGCAAGGTCTAGTGTTTCAG+GGG 0.637403 4.1:+14522059 None:intergenic
ATTCAATAGGAATTCATACT+CGG 0.642142 4.1:-14521875 MS.gene09269:CDS
GACTGTGAATAGGTTTCCTG+CGG 0.644543 4.1:+14522634 None:intergenic
AGAACACGGGAGAATTCAGG+AGG 0.649555 4.1:+14524482 None:intergenic
ATAGGTTGGGAGAAGAACAC+GGG 0.651753 4.1:+14524469 None:intergenic
AATTTCCTTACTGAAAGACC+AGG 0.654469 4.1:-14521646 MS.gene09269:CDS
AAGATGCCCCAGTATCTGCA+AGG 0.666464 4.1:+14522043 None:intergenic
AGGCTGTTCAGACAATGAAG+AGG 0.672815 4.1:-14521626 MS.gene09269:CDS
TATCAATCTAGCTCCACCAA+AGG 0.674289 4.1:-14521734 MS.gene09269:CDS
TCTTCAGAAGACGTATGACA+TGG 0.676071 4.1:-14524573 MS.gene09269:CDS
CTTGATATCAGGTAGCACAC+AGG 0.676389 4.1:-14522169 MS.gene09269:CDS
GGCTGCACGTGATCAACCTG+AGG 0.691898 4.1:+14522315 None:intergenic
TCAGAAGACGTATGACATGG+TGG 0.698200 4.1:-14524570 MS.gene09269:CDS
ACTAGACCTTGCAGATACTG+GGG 0.701020 4.1:-14522049 MS.gene09269:CDS
ATAGTGAGCAAGAAGAAGGG+CGG 0.709670 4.1:-14521576 MS.gene09269:CDS
GGATCTACAGCAGAACCCGG+AGG 0.744225 4.1:+14522603 None:intergenic
GAACACGGGAGAATTCAGGA+GGG 0.754078 4.1:+14524483 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATAAAAATTTACAATAT+AGG + chr4.1:14523164-14523183 None:intergenic 10.0%
!!! ATATTTTTGTAAAGATTTAA+TGG - chr4.1:14523313-14523332 MS.gene09269:intron 10.0%
!!! ATTTATGTTTTAATTTGTTA+TGG - chr4.1:14523395-14523414 MS.gene09269:intron 10.0%
!! ATAAATATGATATGATGATA+TGG - chr4.1:14522434-14522453 MS.gene09269:CDS 15.0%
!! ATATCATATTTATATAGTTC+AGG + chr4.1:14522427-14522446 None:intergenic 15.0%
!! ATTATGAACAAATTTAGATT+TGG - chr4.1:14521969-14521988 MS.gene09269:CDS 15.0%
!!! ATCTTTTATAAATTCTTCAT+TGG + chr4.1:14523483-14523502 None:intergenic 15.0%
!! AATGGGAAAATTTAACATTT+AGG + chr4.1:14523011-14523030 None:intergenic 20.0%
!! AGGATTAAACAATAAAAATC+TGG + chr4.1:14523050-14523069 None:intergenic 20.0%
!! ATGGGAAAATTTAACATTTA+GGG + chr4.1:14523010-14523029 None:intergenic 20.0%
!! ATGTGAAAGATTTGAAAATA+AGG + chr4.1:14522962-14522981 None:intergenic 20.0%
!! GGATTAAACAATAAAAATCT+GGG + chr4.1:14523049-14523068 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAGTATA+TGG - chr4.1:14522510-14522529 MS.gene09269:CDS 20.0%
!!! AGCTAACTTTTTTTTTTTCA+TGG + chr4.1:14522909-14522928 None:intergenic 20.0%
!!! ATTGACACATTTTTGTTTTT+CGG + chr4.1:14522493-14522512 None:intergenic 20.0%
!!! ATTTATATGTGCTTTTTATC+AGG - chr4.1:14523421-14523440 MS.gene09269:intron 20.0%
!!! TTATTTTCAAATCTTTCACA+TGG - chr4.1:14522961-14522980 MS.gene09269:intron 20.0%
!!! TTTATATGTGCTTTTTATCA+GGG - chr4.1:14523422-14523441 MS.gene09269:intron 20.0%
! AAAAATCTGCTTAGTAAGAT+AGG - chr4.1:14521945-14521964 MS.gene09269:CDS 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr4.1:14523224-14523243 MS.gene09269:intron 25.0%
! AATTTCCTGACAGTTTATTT+GGG + chr4.1:14524323-14524342 None:intergenic 25.0%
! ATAACAAAAGCTTCATTGTT+TGG - chr4.1:14521655-14521674 MS.gene09269:CDS 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr4.1:14522383-14522402 None:intergenic 25.0%
! ATGGCAATGATTAAAAACTA+AGG - chr4.1:14523243-14523262 MS.gene09269:intron 25.0%
! ATTACACACATAAAAACTTC+AGG + chr4.1:14523288-14523307 None:intergenic 25.0%
! ATTCAATAGGAATTCATACT+CGG - chr4.1:14524288-14524307 MS.gene09269:intron 25.0%
! TGGGCAATTATTGAATTTAA+AGG - chr4.1:14522821-14522840 MS.gene09269:intron 25.0%
! TTGATATCTAACTCTTAGAT+AGG - chr4.1:14523195-14523214 MS.gene09269:intron 25.0%
!! AGTTTATTTGAGATATCTTG+AGG + chr4.1:14523938-14523957 None:intergenic 25.0%
!! GTTTATTTGAGATATCTTGA+GGG + chr4.1:14523937-14523956 None:intergenic 25.0%
!! TATCATGTTTCTATAGTGTA+GGG - chr4.1:14522616-14522635 MS.gene09269:CDS 25.0%
!! TTATCATGTTTCTATAGTGT+AGG - chr4.1:14522615-14522634 MS.gene09269:CDS 25.0%
!!! TTGACACATTTTTGTTTTTC+GGG + chr4.1:14522492-14522511 None:intergenic 25.0%
AAAAAAAATTCTGCAGCATC+TGG - chr4.1:14522323-14522342 MS.gene09269:CDS 30.0%
AATCATTCAAAGAAGTTTGC+AGG - chr4.1:14523338-14523357 MS.gene09269:intron 30.0%
AATTGGAGTTGCTAAATGTT+GGG - chr4.1:14522006-14522025 MS.gene09269:CDS 30.0%
ATCCATGTTCTTGATGTTAA+TGG + chr4.1:14524629-14524648 None:intergenic 30.0%
ATGCCAGAGTTAAATTTAGT+TGG + chr4.1:14524255-14524274 None:intergenic 30.0%
ATTCAATAATTGCCCATGTA+TGG + chr4.1:14522817-14522836 None:intergenic 30.0%
ATTTCCTGACAGTTTATTTG+GGG + chr4.1:14524322-14524341 None:intergenic 30.0%
CAAATAAACTGTCAGGAAAT+TGG - chr4.1:14524322-14524341 MS.gene09269:intron 30.0%
CAATTTCCTGACAGTTTATT+TGG + chr4.1:14524324-14524343 None:intergenic 30.0%
CTTGTACATTGGAATTCAAT+AGG - chr4.1:14524275-14524294 MS.gene09269:intron 30.0%
GAAATTGTTGTGCTTGAAAT+AGG + chr4.1:14521715-14521734 None:intergenic 30.0%
GGTTATAGTATGCACTTAAT+GGG + chr4.1:14523028-14523047 None:intergenic 30.0%
TAATTCAGGGACTAAATTGA+TGG - chr4.1:14522660-14522679 MS.gene09269:CDS 30.0%
TAATTGGAGTTGCTAAATGT+TGG - chr4.1:14522005-14522024 MS.gene09269:CDS 30.0%
TCAGATATGAACTTGATATC+AGG - chr4.1:14523983-14524002 MS.gene09269:intron 30.0%
TCATCATATCACACTATTTC+TGG + chr4.1:14522467-14522486 None:intergenic 30.0%
TCTGAATATCACACTATTTC+TGG - chr4.1:14522394-14522413 MS.gene09269:CDS 30.0%
TGGATTTCATTGAGTCTAAT+TGG - chr4.1:14521989-14522008 MS.gene09269:CDS 30.0%
TGGCAGCTTATAATAAGAAA+AGG - chr4.1:14523819-14523838 MS.gene09269:intron 30.0%
TTGATTGATATGATGATACC+CGG - chr4.1:14523118-14523137 MS.gene09269:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr4.1:14522726-14522745 None:intergenic 30.0%
! GATGGTAAAGAATCTGAAAT+TGG - chr4.1:14524373-14524392 MS.gene09269:intron 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr4.1:14521763-14521782 None:intergenic 30.0%
! TAGGGACTAAATTTGAGATA+GGG - chr4.1:14522634-14522653 MS.gene09269:CDS 30.0%
!! GGCATCTTTTACTTTTAACA+TGG - chr4.1:14524135-14524154 MS.gene09269:intron 30.0%
!!! TGTTTGCCATTTTTGTTTTC+CGG + chr4.1:14523140-14523159 None:intergenic 30.0%
!!! TTGATGGTTTTATTCATGAC+TGG + chr4.1:14522367-14522386 None:intergenic 30.0%
!!! TTTTTTCATGGAAATGTCAC+AGG + chr4.1:14522897-14522916 None:intergenic 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr4.1:14523276-14523295 None:intergenic 35.0%
AAAGAAGTTTGCAGGTCTTA+TGG - chr4.1:14523346-14523365 MS.gene09269:intron 35.0%
AAATTAAGACCTACGAAGCA+TGG + chr4.1:14522241-14522260 None:intergenic 35.0%
AATTTCCTTACTGAAAGACC+AGG - chr4.1:14524517-14524536 MS.gene09269:CDS 35.0%
ACACTGAATTATGTCACTGT+CGG + chr4.1:14522150-14522169 None:intergenic 35.0%
AGCAATTTCAGACTGGAATT+TGG - chr4.1:14523902-14523921 MS.gene09269:intron 35.0%
ATAACTGTAGCTTAAGAGCT+TGG + chr4.1:14523648-14523667 None:intergenic 35.0%
ATCCATCTTTCATCATTCTC+AGG + chr4.1:14522033-14522052 None:intergenic 35.0%
ATTATAAGCTGCCAAATCCA+TGG + chr4.1:14523813-14523832 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr4.1:14523799-14523818 MS.gene09269:intron 35.0%
CAAATAGTGAGCAAGAAGAA+GGG - chr4.1:14524584-14524603 MS.gene09269:CDS 35.0%
CAGAGTTAAATTTAGTTGGC+AGG + chr4.1:14524251-14524270 None:intergenic 35.0%
CTCCATTAACATCAAGAACA+TGG - chr4.1:14524624-14524643 MS.gene09269:CDS 35.0%
CTGCCAACTAAATTTAACTC+TGG - chr4.1:14524249-14524268 MS.gene09269:intron 35.0%
CTTAGTCGAGTTTCAATTAG+TGG - chr4.1:14521883-14521902 MS.gene09269:CDS 35.0%
GCAATTTCAGACTGGAATTT+GGG - chr4.1:14523903-14523922 MS.gene09269:intron 35.0%
GGGTTATAGTATGCACTTAA+TGG + chr4.1:14523029-14523048 None:intergenic 35.0%
TGAGATAGGGTGATAATTCA+GGG - chr4.1:14522647-14522666 MS.gene09269:CDS 35.0%
TGATACCCGGAAAACAAAAA+TGG - chr4.1:14523131-14523150 MS.gene09269:intron 35.0%
TGTTGTGCTTGAAATAGGTT+GGG + chr4.1:14521710-14521729 None:intergenic 35.0%
TTGAGATAGGGTGATAATTC+AGG - chr4.1:14522646-14522665 MS.gene09269:CDS 35.0%
TTGTTGTGCTTGAAATAGGT+TGG + chr4.1:14521711-14521730 None:intergenic 35.0%
! AATCCATGGATTCGATTTTG+CGG + chr4.1:14523799-14523818 None:intergenic 35.0%
! AATTCCAGTCTGAAATTGCT+AGG + chr4.1:14523902-14523921 None:intergenic 35.0%
! ATTTGGAATTGCTCGATAGT+TGG + chr4.1:14524569-14524588 None:intergenic 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - chr4.1:14522242-14522261 MS.gene09269:CDS 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr4.1:14522633-14522652 MS.gene09269:CDS 35.0%
! GTGACTTGTGACTAAATTGA+CGG - chr4.1:14522569-14522588 MS.gene09269:CDS 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr4.1:14521588-14521607 None:intergenic 35.0%
! TGACTTGTGACTAAATTGAC+GGG - chr4.1:14522570-14522589 MS.gene09269:CDS 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr4.1:14523739-14523758 MS.gene09269:intron 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - chr4.1:14522248-14522267 MS.gene09269:CDS 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr4.1:14521749-14521768 None:intergenic 35.0%
!!! GTTTGCCATTTTTGTTTTCC+GGG + chr4.1:14523139-14523158 None:intergenic 35.0%
AAACCGAAATGTGGCTAATG+AGG - chr4.1:14524405-14524424 MS.gene09269:intron 40.0%
AACTCTGGCATCTTGTACAT+TGG - chr4.1:14524264-14524283 MS.gene09269:intron 40.0%
AATTATGTCACTGTCGGTGT+CGG + chr4.1:14522144-14522163 None:intergenic 40.0%
AGCTTAAGAGCTTGGATTGA+AGG + chr4.1:14523640-14523659 None:intergenic 40.0%
AGTTTCCACAAACCGAAATG+TGG - chr4.1:14524396-14524415 MS.gene09269:intron 40.0%
ATTGTCAACCAAGCTACCTT+CGG + chr4.1:14523879-14523898 None:intergenic 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr4.1:14522713-14522732 None:intergenic 40.0%
CAATCCTAGCAATTTCAGAC+TGG - chr4.1:14523895-14523914 MS.gene09269:intron 40.0%
CCAAATAGTGAGCAAGAAGA+AGG - chr4.1:14524583-14524602 MS.gene09269:CDS 40.0%
CCTTCTTCTTGCTCACTATT+TGG + chr4.1:14524586-14524605 None:intergenic 40.0%
CTATCACCTTCTTCAGTACT+TGG + chr4.1:14524220-14524239 None:intergenic 40.0%
CTGCAGAAAAATCTGTCTGA+AGG - chr4.1:14524040-14524059 MS.gene09269:intron 40.0%
CTGTCAGGAAATTGGCAATT+TGG - chr4.1:14524330-14524349 MS.gene09269:intron 40.0%
CTTTCACATGGCTAACCTAT+GGG - chr4.1:14522973-14522992 MS.gene09269:intron 40.0%
GACCTGAGAATGATGAAAGA+TGG - chr4.1:14522028-14522047 MS.gene09269:CDS 40.0%
GCTCCAGAGAATGAAGATTT+GGG + chr4.1:14524198-14524217 None:intergenic 40.0%
GCTTAAGAGCTTGGATTGAA+GGG + chr4.1:14523639-14523658 None:intergenic 40.0%
GGATGACTATGACTGTGAAT+AGG + chr4.1:14523542-14523561 None:intergenic 40.0%
TAGCCTCATTAGCCACATTT+CGG + chr4.1:14524411-14524430 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr4.1:14521590-14521609 MS.gene09269:CDS 40.0%
TCTTTCACATGGCTAACCTA+TGG - chr4.1:14522972-14522991 MS.gene09269:intron 40.0%
TGAAGCACAAACATAGACAC+CGG - chr4.1:14522090-14522109 MS.gene09269:CDS 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - chr4.1:14523568-14523587 MS.gene09269:intron 40.0%
TTGATATCAGGTAGCACACA+GGG - chr4.1:14523995-14524014 MS.gene09269:intron 40.0%
! AAGTTCATATCTGAGACAGC+TGG + chr4.1:14523977-14523996 None:intergenic 40.0%
! AATAGGTTGGGAGAAGAACA+CGG + chr4.1:14521698-14521717 None:intergenic 40.0%
! ATCCATGGATTCGATTTTGC+GGG + chr4.1:14523798-14523817 None:intergenic 40.0%
! ATGACTGACACGGGAAATTT+TGG + chr4.1:14522853-14522872 None:intergenic 40.0%
! ATTAGCCACATTTCGGTTTG+TGG + chr4.1:14524404-14524423 None:intergenic 40.0%
! CATACGTGTCATTGTTGTGT+CGG - chr4.1:14522173-14522192 MS.gene09269:CDS 40.0%
! CTTCAGACAGATTTTTCTGC+AGG + chr4.1:14524042-14524061 None:intergenic 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - chr4.1:14522247-14522266 MS.gene09269:CDS 40.0%
! TAAGGTGTTTGTGTTGTGTC+CGG + chr4.1:14522112-14522131 None:intergenic 40.0%
! TATCAATCTAGCTCCACCAA+AGG - chr4.1:14524429-14524448 MS.gene09269:CDS 40.0%
! TGACTGACACGGGAAATTTT+GGG + chr4.1:14522852-14522871 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr4.1:14522273-14522292 MS.gene09269:CDS 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr4.1:14523684-14523703 MS.gene09269:intron 40.0%
! TTCTGAAGAATATACACCGC+AGG - chr4.1:14523513-14523532 MS.gene09269:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr4.1:14522711-14522730 MS.gene09269:CDS 40.0%
AAAAGCAGATCCTGAGCGTT+GGG - chr4.1:14523451-14523470 MS.gene09269:intron 45.0%
AACCTGCGTCTAACCATACA+TGG - chr4.1:14522801-14522820 MS.gene09269:intron 45.0%
ACACTAGACCTTGCAGATAC+TGG - chr4.1:14524112-14524131 MS.gene09269:intron 45.0%
ACAGGAATGCAGACAAGAAC+TGG - chr4.1:14524070-14524089 MS.gene09269:intron 45.0%
ACAGGGTTCAAACGAAGATG+AGG - chr4.1:14524012-14524031 MS.gene09269:intron 45.0%
ACCTGCGTCTAACCATACAT+GGG - chr4.1:14522802-14522821 MS.gene09269:intron 45.0%
ACTAGACCTTGCAGATACTG+GGG - chr4.1:14524114-14524133 MS.gene09269:intron 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr4.1:14523273-14523292 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr4.1:14521625-14521644 None:intergenic 45.0%
AGAAGAACACGGGAGAATTC+AGG + chr4.1:14521687-14521706 None:intergenic 45.0%
AGACACATCATGACTGACAC+GGG + chr4.1:14522862-14522881 None:intergenic 45.0%
AGGCTGTTCAGACAATGAAG+AGG - chr4.1:14524537-14524556 MS.gene09269:CDS 45.0%
ATAGGAATTCATACTCGGCC+AGG - chr4.1:14524293-14524312 MS.gene09269:intron 45.0%
ATAGTGAGCAAGAAGAAGGG+CGG - chr4.1:14524587-14524606 MS.gene09269:CDS 45.0%
ATGTCTACGATGCAGAAGAC+AGG + chr4.1:14523074-14523093 None:intergenic 45.0%
ATTCTGCAGCATCTGGATCT+TGG - chr4.1:14522330-14522349 MS.gene09269:CDS 45.0%
CACTAGACCTTGCAGATACT+GGG - chr4.1:14524113-14524132 MS.gene09269:intron 45.0%
CAGACACATCATGACTGACA+CGG + chr4.1:14522863-14522882 None:intergenic 45.0%
CAGCATCTGGATCTTGGTAA+TGG - chr4.1:14522336-14522355 MS.gene09269:CDS 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr4.1:14521628-14521647 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr4.1:14521625-14521644 MS.gene09269:CDS 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr4.1:14523085-14523104 MS.gene09269:intron 45.0%
CTGCAAGGTCTAGTGTTTCA+GGG + chr4.1:14524108-14524127 None:intergenic 45.0%
CTTGATATCAGGTAGCACAC+AGG - chr4.1:14523994-14524013 MS.gene09269:intron 45.0%
GACTGTGAATAGGTTTCCTG+CGG + chr4.1:14523532-14523551 None:intergenic 45.0%
GAGTCAAGAGTTAACGCTGA+TGG - chr4.1:14524355-14524374 MS.gene09269:intron 45.0%
GGCTCCAGAGAATGAAGATT+TGG + chr4.1:14524199-14524218 None:intergenic 45.0%
GTGCCCAAATCTTCATTCTC+TGG - chr4.1:14524192-14524211 MS.gene09269:intron 45.0%
GTGTTTCAGGGGTAAAAGCA+AGG + chr4.1:14524096-14524115 None:intergenic 45.0%
GTTCGCGAATGTGTCATGAA+CGG - chr4.1:14522763-14522782 MS.gene09269:intron 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - chr4.1:14523567-14523586 MS.gene09269:intron 45.0%
TAAGAAAAGGCGATTGCCTC+AGG - chr4.1:14523832-14523851 MS.gene09269:intron 45.0%
TACGAAGCATGGACAATCCT+CGG + chr4.1:14522230-14522249 None:intergenic 45.0%
TCACAGTCATAGTCATCCTC+CGG - chr4.1:14523544-14523563 MS.gene09269:intron 45.0%
TCAGAAGACGTATGACATGG+TGG - chr4.1:14521593-14521612 MS.gene09269:CDS 45.0%
TCTGCAAGGTCTAGTGTTTC+AGG + chr4.1:14524109-14524128 None:intergenic 45.0%
TCTTCATTGTCTGAACAGCC+TGG + chr4.1:14524538-14524557 None:intergenic 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - chr4.1:14523670-14523689 MS.gene09269:intron 45.0%
TGCAAGGTCTAGTGTTTCAG+GGG + chr4.1:14524107-14524126 None:intergenic 45.0%
TTCCCGCAAAATCGAATCCA+TGG - chr4.1:14523793-14523812 MS.gene09269:intron 45.0%
! AACAGCCTGGTCTTTCAGTA+AGG + chr4.1:14524525-14524544 None:intergenic 45.0%
! ACGGGGTGAATGATGTGTTT+TGG - chr4.1:14524491-14524510 MS.gene09269:CDS 45.0%
! ATAGGTTGGGAGAAGAACAC+GGG + chr4.1:14521697-14521716 None:intergenic 45.0%
! CGGGGTGAATGATGTGTTTT+GGG - chr4.1:14524492-14524511 MS.gene09269:CDS 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - chr4.1:14523748-14523767 MS.gene09269:intron 45.0%
AAGATGCCCCAGTATCTGCA+AGG + chr4.1:14524123-14524142 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr4.1:14524448-14524467 None:intergenic 50.0%
AGAACACGGGAGAATTCAGG+AGG + chr4.1:14521684-14521703 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr4.1:14523577-14523596 MS.gene09269:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr4.1:14523545-14523564 MS.gene09269:intron 50.0%
CTACGATGCAGAAGACAGGT+AGG + chr4.1:14523070-14523089 None:intergenic 50.0%
CTGTCTGAAGGAGAACTGAC+AGG - chr4.1:14524052-14524071 MS.gene09269:intron 50.0%
GAAAAGCAGATCCTGAGCGT+TGG - chr4.1:14523450-14523469 MS.gene09269:intron 50.0%
GAACACGGGAGAATTCAGGA+GGG + chr4.1:14521683-14521702 None:intergenic 50.0%
GAGGATTGTCCATGCTTCGT+AGG - chr4.1:14522229-14522248 MS.gene09269:CDS 50.0%
GATTAGGTGTGTCCTGACGT+CGG + chr4.1:14522208-14522227 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr4.1:14523708-14523727 MS.gene09269:intron 50.0%
GCATGGACAATCCTCGGATT+AGG + chr4.1:14522224-14522243 None:intergenic 50.0%
GTCGCCCCAAATAAACTGTC+AGG - chr4.1:14524315-14524334 MS.gene09269:intron 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr4.1:14522264-14522283 MS.gene09269:CDS 50.0%
TCCAAGTCAAAGCTGCTGCT+CGG - chr4.1:14524467-14524486 MS.gene09269:CDS 50.0%
TCTGGATCTACAGCAGAACC+CGG + chr4.1:14523566-14523585 None:intergenic 50.0%
TTACCTGAAGCCTCCTTTGG+TGG + chr4.1:14524445-14524464 None:intergenic 50.0%
! ACAGTTTATTTGGGGCGACC+TGG + chr4.1:14524314-14524333 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr4.1:14521739-14521758 None:intergenic 50.0%
! CAATCTAGCTCCACCAAAGG+AGG - chr4.1:14524432-14524451 MS.gene09269:CDS 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr4.1:14523695-14523714 MS.gene09269:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr4.1:14523691-14523710 MS.gene09269:intron 50.0%
! GGCTAACCTATGGGTGCTTT+TGG - chr4.1:14522982-14523001 MS.gene09269:intron 50.0%
! GGTTAGACGCAGGTTCTAAC+TGG + chr4.1:14522796-14522815 None:intergenic 50.0%
! GTCTTCTGAAGAAACGGTGC+CGG + chr4.1:14521582-14521601 None:intergenic 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr4.1:14522260-14522279 MS.gene09269:CDS 50.0%
!! AGGGTTCCAAAAGCACCCAT+AGG + chr4.1:14522991-14523010 None:intergenic 50.0%
!! CTGGAGCCAAGTACTGAAGA+AGG - chr4.1:14524211-14524230 MS.gene09269:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr4.1:14523872-14523891 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr4.1:14523269-14523288 None:intergenic 55.0%
GAAGAAGGGCGGTCAGTTCA+TGG - chr4.1:14524598-14524617 MS.gene09269:CDS 55.0%
GCCCATGTATGGTTAGACGC+AGG + chr4.1:14522806-14522825 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr4.1:14522263-14522282 MS.gene09269:CDS 55.0%
GTCAGGACACACCTAATCCG+AGG - chr4.1:14522210-14522229 MS.gene09269:CDS 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr4.1:14523270-14523289 None:intergenic 55.0%
TGCTCCAATGCTGCCCTTTC+TGG + chr4.1:14523584-14523603 None:intergenic 55.0%
TTGGCAAACTCCCAACGCTC+AGG + chr4.1:14523464-14523483 None:intergenic 55.0%
GCAGCGGCTGATGAGGATTG+TGG + chr4.1:14521537-14521556 None:intergenic 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr4.1:14523868-14523887 MS.gene09269:intron 60.0%
GCTCCACCAAAGGAGGCTTC+AGG - chr4.1:14524439-14524458 MS.gene09269:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG + chr4.1:14523563-14523582 None:intergenic 60.0%
GGCTGCACGTGATCAACCTG+AGG + chr4.1:14523851-14523870 None:intergenic 60.0%
GTCAAAGCTGCTGCTCGGCA+CGG - chr4.1:14524472-14524491 MS.gene09269:CDS 60.0%
TCAAAGCTGCTGCTCGGCAC+GGG - chr4.1:14524473-14524492 MS.gene09269:CDS 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr4.1:14523700-14523719 MS.gene09269:intron 60.0%
! GCCGAGCAGCAGCTTTGACT+TGG + chr4.1:14524471-14524490 None:intergenic 60.0%
!! GTCACTGTCGGTGTCGGTGT+CGG + chr4.1:14522138-14522157 None:intergenic 60.0%
CAAAGCTGCTGCTCGGCACG+GGG - chr4.1:14524474-14524493 MS.gene09269:CDS 65.0%
CACGTGCAGCCTGTTGCCGA+AGG - chr4.1:14523860-14523879 MS.gene09269:intron 65.0%
! CGGTGTCAGACACCGACGTC+AGG - chr4.1:14522193-14522212 MS.gene09269:CDS 65.0%
!! CGGTGTCGGTGTCGGCGATA+AGG + chr4.1:14522130-14522149 None:intergenic 65.0%
ACCTCCTCCGCTTCCTCCGG+CGG + chr4.1:14521559-14521578 None:intergenic 70.0%
CGGACCTCCTCCGCTTCCTC+CGG + chr4.1:14521562-14521581 None:intergenic 70.0%
CGGAGGAAGCGGAGGAGGTC+CGG - chr4.1:14521560-14521579 MS.gene09269:CDS 70.0%
TCCTCATCAGCCGCTGCCGC+CGG - chr4.1:14521540-14521559 MS.gene09269:CDS 70.0%
TCATCAGCCGCTGCCGCCGG+AGG - chr4.1:14521543-14521562 MS.gene09269:CDS 75.0%
TCCGCTTCCTCCGGCGGCAG+CGG + chr4.1:14521553-14521572 None:intergenic 75.0%
TCCGGCGGCAGCGGCTGATG+AGG + chr4.1:14521544-14521563 None:intergenic 75.0%
! GCCGCCGGAGGAAGCGGAGG+AGG - chr4.1:14521555-14521574 MS.gene09269:CDS 80.0%
! GCCGCTGCCGCCGGAGGAAG+CGG - chr4.1:14521549-14521568 MS.gene09269:CDS 80.0%
! GCTGCCGCCGGAGGAAGCGG+AGG - chr4.1:14521552-14521571 MS.gene09269:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 14521522 14524663 14521522 ID=MS.gene09269
chr4.1 mRNA 14521522 14524663 14521522 ID=MS.gene09269.t1;Parent=MS.gene09269
chr4.1 exon 14524421 14524663 14524421 ID=MS.gene09269.t1.exon1;Parent=MS.gene09269.t1
chr4.1 CDS 14524421 14524663 14524421 ID=cds.MS.gene09269.t1;Parent=MS.gene09269.t1
chr4.1 exon 14521522 14522742 14521522 ID=MS.gene09269.t1.exon2;Parent=MS.gene09269.t1
chr4.1 CDS 14521522 14522742 14521522 ID=cds.MS.gene09269.t1;Parent=MS.gene09269.t1
Gene Sequence

>MS.gene09269

ATGAATTCTGCACCACAATCCTCATCAGCCGCTGCCGCCGGAGGAAGCGGAGGAGGTCCGGCACCGTTTCTTCAGAAGACGTATGACATGGTGGATGATTCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATTGTTTGGAACCCTCCTGAATTCTCCCGTGTTCTTCTCCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCATGCTATACGCTTCTTTTGATTGTTTCATTGTTATTTTGTATGATCAATTAGTTATTGTTTTTGTTTGATTGTTTGTTGTATTTGTATGATTTGATTTCATTGTGTCTTAGTCGAGTTTCAATTAGTGGATATTGATTGTTATGATATGATCATTAAGAGATTGATGAAAAAATCTGCTTAGTAAGATAGGAATTATGAACAAATTTAGATTTGGATTTCATTGAGTCTAATTGGAGTTGCTAAATGTTGGGACCTGAGAATGATGAAAGATGGATGAGATATTATATAGTCTTGTACTGCACTTTTATGCTATGAAGCACAAACATAGACACCGGACACAACACAAACACCTTATCGCCGACACCGACACCGACAGTGACATAATTCAGTGTTATCATACGTGTCATTGTTGTGTCGGTGTCAGACACCGACGTCAGGACACACCTAATCCGAGGATTGTCCATGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAACAATCAAAAAAAATTCTGCAGCATCTGGATCTTGGTAATGGTACATCCAGTCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCTGGTTTATTTCCTGAACTATATAAATATGATATGATGATATGGAAATAAACCAGAAATAGTGTGATATGATGATACCCGAAAAACAAAAATGTGTCAATTTAGTCTTTGAAGTATATGGAAATTCGTCAATTTTGTCTCAAACATCTTAATTGTTGTGACTTGTGACTAAATTGACGGGTTTCATATGCTTTAGAGACTACTTATCATGTTTCTATAGTGTAGGGACTAAATTTGAGATAGGGTGATAATTCAGGGACTAAATTGATGGTTTACAATCAGTGATCAAATAATTGCGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCACTACAAAAAAGAAGTTCGCGAATGTGTCATGAACGGAAAATGACCAGTTAGAACCTGCGTCTAACCATACATGGGCAATTATTGAATTTAAAGGATTTACCCAAAATTTCCCGTGTCAGTCATGATGTGTCTGCGATGTTATTTCCTGTGACATTTCCATGAAAAAAAAAAAGTTAGCTTGTTTTTCTTTTATAATTATACAAATATTACCTTATTTTCAAATCTTTCACATGGCTAACCTATGGGTGCTTTTGGAACCCTAAATGTTAAATTTTCCCATTAAGTGCATACTATAACCCAGATTTTTATTGTTTAATCCTACCTGTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGATTGATATGATGATACCCGGAAAACAAAAATGGCAAACATCCTATATTGTAAATTTTTATTGAACTTGTTGAAATTGATATCTAACTCTTAGATAGGATTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGGCCCACCGCCAGATTTGCTTCCTGAAGTTTTTATGTGTGTAATGAAGAATATTTTTGTAAAGATTTAATGGTAAATCATTCAAAGAAGTTTGCAGGTCTTATGGCTTTAATGATAAACAATTGTTTATGAATTTATGTTTTAATTTGTTATGGTTTATTTATATGTGCTTTTTATCAGGGATTTCGAAAAGCAGATCCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATTCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGAAGCTGTCTCGCGAGAAAAATGCCCTTCAATCCAAGCTCTTAAGCTACAGTTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTTATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGCAGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACGTGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACAATCCTAGCAATTTCAGACTGGAATTTGGGAATGTATTCCCTCAAGATATCTCAAATAAACTCAGACTAGAATTGTCACCAGCTGTCTCAGATATGAACTTGATATCAGGTAGCACACAGGGTTCAAACGAAGATGAGGAAAGCCTGCAGAAAAATCTGTCTGAAGGAGAACTGACAGGAATGCAGACAAGAACTGGCCTTGCTTTTACCCCTGAAACACTAGACCTTGCAGATACTGGGGCATCTTTTACTTTTAACATGGATTCGTGTTTATCACAAAGAGCAACTACTACTGAGTGCCCAAATCTTCATTCTCTGGAGCCAAGTACTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACATTGGAATTCAATAGGAATTCATACTCGGCCAGGTCGCCCCAAATAAACTGTCAGGAAATTGGCAATTTGGCAGAGTCAAGAGTTAACGCTGATGGTAAAGAATCTGAAATTGGAGTTTCCACAAACCGAAATGTGGCTAATGAGGCTATCAATCTAGCTCCACCAAAGGAGGCTTCAGGTAACGTCCAAGTCAAAGCTGCTGCTCGGCACGGGGTGAATGATGTGTTTTGGGAAAATTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAATTCCAAATAGTGAGCAAGAAGAAGGGCGGTCAGTTCATGGAATCTCCATTAACATCAAGAACATGGATAATCTCACCCTTTGA
Protein sequence

>MS.gene09269.t1

MNSAPQSSSAAAAGGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAALEQEIEKLSREKNALQSKLLSYSYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLAAYNKKRRLPQVDHVQPVAEGSLVDNPSNFRLEFGNVFPQDISNKLRLELSPAVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTRTGLAFTPETLDLADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFNRNSYSARSPQINCQEIGNLAESRVNADGKESEIGVSTNRNVANEAINLAPPKEASGNVQVKAAARHGVNDVFWENFLTERPGCSDNEEAISNYRAIPNSEQEEGRSVHGISINIKNMDNLTL