Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09379.t1 | GAU43673.1 | 70.9 | 537 | 106 | 6 | 110 | 633 | 40 | 539 | 3.50E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09379.t1 | Q9M2U3 | 32.0 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 1.5e-17 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09379.t1 | A0A2Z6NNS9 | 70.9 | 537 | 106 | 6 | 110 | 633 | 40 | 539 | 2.5e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050855 | MS.gene09379 | 0.902469 | 9.40E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09379.t1 | MTR_0697s0010 | 86.875 | 320 | 27 | 2 | 306 | 625 | 1 | 305 | 0.0 | 565 |
| MS.gene09379.t1 | MTR_3g075160 | 66.869 | 329 | 105 | 3 | 306 | 634 | 1 | 325 | 4.41e-149 | 434 |
| MS.gene09379.t1 | MTR_3g453160 | 62.736 | 212 | 75 | 3 | 423 | 634 | 2 | 209 | 4.93e-78 | 247 |
| MS.gene09379.t1 | MTR_4g117940 | 87.736 | 106 | 13 | 0 | 2 | 107 | 71 | 176 | 3.86e-65 | 212 |
| MS.gene09379.t1 | MTR_4g055725 | 47.596 | 208 | 89 | 2 | 6 | 213 | 78 | 265 | 4.11e-55 | 189 |
| MS.gene09379.t1 | MTR_1g052620 | 84.706 | 85 | 13 | 0 | 541 | 625 | 1 | 85 | 9.83e-42 | 150 |
| MS.gene09379.t1 | MTR_4g117120 | 53.731 | 134 | 62 | 0 | 2 | 135 | 149 | 282 | 7.38e-39 | 147 |
| MS.gene09379.t1 | MTR_4g117120 | 46.739 | 92 | 38 | 2 | 238 | 328 | 285 | 366 | 5.24e-15 | 77.8 |
| MS.gene09379.t1 | MTR_7g094990 | 47.826 | 138 | 69 | 2 | 3 | 137 | 70 | 207 | 2.78e-25 | 109 |
| MS.gene09379.t1 | MTR_7g094990 | 43.478 | 115 | 51 | 4 | 339 | 452 | 167 | 268 | 1.69e-18 | 88.6 |
| MS.gene09379.t1 | MTR_8g463880 | 47.619 | 84 | 44 | 0 | 6 | 89 | 64 | 147 | 6.54e-17 | 78.6 |
| MS.gene09379.t1 | MTR_7g056633 | 45.882 | 85 | 46 | 0 | 6 | 90 | 32 | 116 | 2.68e-15 | 73.6 |
| MS.gene09379.t1 | MTR_5g063300 | 45.679 | 81 | 44 | 0 | 11 | 91 | 55 | 135 | 1.45e-13 | 68.9 |
| MS.gene09379.t1 | MTR_8g062180 | 26.639 | 244 | 168 | 7 | 322 | 561 | 68 | 304 | 8.42e-12 | 67.8 |
| MS.gene09379.t1 | MTR_1g055365 | 28.155 | 206 | 131 | 7 | 295 | 500 | 2 | 190 | 1.64e-11 | 67.8 |
| MS.gene09379.t1 | MTR_3g045460 | 31.016 | 187 | 109 | 8 | 322 | 500 | 518 | 692 | 2.16e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09379.t1 | AT5G41980 | 39.412 | 340 | 178 | 8 | 6 | 340 | 42 | 358 | 3.49e-65 | 219 |
| MS.gene09379.t1 | AT1G43722 | 36.434 | 258 | 145 | 6 | 5 | 246 | 65 | 319 | 2.47e-41 | 153 |
| MS.gene09379.t1 | AT5G35695 | 39.037 | 187 | 96 | 3 | 129 | 314 | 3 | 172 | 1.47e-34 | 130 |
| MS.gene09379.t1 | AT3G30525 | 35.443 | 158 | 96 | 2 | 113 | 264 | 1 | 158 | 2.10e-24 | 100 |
| MS.gene09379.t1 | AT5G28950 | 46.739 | 92 | 46 | 2 | 91 | 181 | 9 | 98 | 7.71e-20 | 87.0 |
| MS.gene09379.t1 | AT3G55350 | 31.959 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 5.31e-18 | 87.0 |
| MS.gene09379.t1 | AT5G12010 | 24.214 | 318 | 204 | 8 | 11 | 308 | 180 | 480 | 1.81e-15 | 80.1 |
| MS.gene09379.t1 | AT1G30140 | 25.714 | 210 | 148 | 5 | 321 | 529 | 16 | 218 | 9.89e-12 | 65.5 |
| MS.gene09379.t1 | AT1G30140 | 25.714 | 210 | 148 | 5 | 321 | 529 | 16 | 218 | 9.89e-12 | 65.5 |
| MS.gene09379.t1 | AT5G27260 | 30.282 | 142 | 95 | 3 | 322 | 462 | 17 | 155 | 4.79e-11 | 64.7 |
Find 126 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTAGTTGTGGGTGTTTC+TGG | 0.116244 | 4.1:-41817474 | None:intergenic |
| GTCAAATTCATTGAACAAAT+TGG | 0.123596 | 4.1:+41817611 | MS.gene09379:CDS |
| AAAACAACCTAAACCAATTT+TGG | 0.140115 | 4.1:+41815794 | MS.gene09379:CDS |
| GGTCCAGGTGCAAGTGGTTT+TGG | 0.158436 | 4.1:+41817077 | MS.gene09379:CDS |
| GATAGCTTGGATACTGTATT+TGG | 0.169898 | 4.1:+41817303 | MS.gene09379:CDS |
| TTCTCGACCAAATGGTTTAA+AGG | 0.180350 | 4.1:+41816046 | MS.gene09379:CDS |
| GATCCTTTGGAAATGAATTT+AGG | 0.216478 | 4.1:+41816455 | MS.gene09379:CDS |
| GTCGCAAAGGTTATTGTCTT+TGG | 0.283992 | 4.1:-41817796 | None:intergenic |
| AGAAATGACATTGGATCCTT+TGG | 0.284461 | 4.1:+41816442 | MS.gene09379:CDS |
| TCTGTGTTGCCCTCCAAAAT+TGG | 0.291608 | 4.1:-41815807 | None:intergenic |
| TGTGACATGTTGCAAGTTAT+TGG | 0.297963 | 4.1:+41815591 | MS.gene09379:CDS |
| GCATTTCAGTAATGTATTAT+TGG | 0.314714 | 4.1:+41815743 | MS.gene09379:CDS |
| TGATTAGAAGACAATTTGTT+AGG | 0.357825 | 4.1:+41815700 | MS.gene09379:CDS |
| AATTATTTACATGAGTGATT+TGG | 0.358633 | 4.1:+41815521 | None:intergenic |
| TTGCCCTCCAAAATTGGTTT+AGG | 0.360631 | 4.1:-41815801 | None:intergenic |
| AATGTAATAGAAAGATGTTT+TGG | 0.366224 | 4.1:+41816311 | MS.gene09379:CDS |
| TTCACTCTTGATTCAATATG+TGG | 0.370372 | 4.1:-41817014 | None:intergenic |
| ACATATATGAATTGTAAATC+TGG | 0.373490 | 4.1:-41815969 | None:intergenic |
| TGAGGAACCTTTAAACCATT+TGG | 0.379841 | 4.1:-41816053 | None:intergenic |
| TATCTACCTTTGTCAGCTTC+CGG | 0.382459 | 4.1:-41815897 | None:intergenic |
| TGGCTTGAGGAAGCGGTTTG+TGG | 0.384622 | 4.1:+41817842 | MS.gene09379:CDS |
| TCAAATTCATTGAACAAATT+GGG | 0.385007 | 4.1:+41817612 | MS.gene09379:CDS |
| AGAAGACAATTTGTTAGGTC+TGG | 0.394249 | 4.1:+41815705 | MS.gene09379:CDS |
| ACCAATACTCCATCTTCTTC+AGG | 0.398208 | 4.1:-41816864 | None:intergenic |
| TGATACCTTTGACCTCTATA+AGG | 0.398826 | 4.1:-41816212 | None:intergenic |
| ACCTGGGTACACTAAAGCTT+TGG | 0.401458 | 4.1:+41816944 | MS.gene09379:CDS |
| TATTATTATTTATGTGATGC+TGG | 0.401796 | 4.1:+41816161 | MS.gene09379:CDS |
| GTCGAGAAATAGCATCTCTA+AGG | 0.403893 | 4.1:-41816031 | None:intergenic |
| AACGTGATTCTACTAATTAT+AGG | 0.406136 | 4.1:+41817532 | MS.gene09379:CDS |
| GGAAGGTTTGTTGAAATTAG+TGG | 0.408222 | 4.1:+41816887 | MS.gene09379:CDS |
| TCACGTTGTGGTTGGTTTGT+TGG | 0.419442 | 4.1:-41817516 | None:intergenic |
| AAGCTATCATAGTGTGGAAA+TGG | 0.420710 | 4.1:-41817288 | None:intergenic |
| TTCTGCAATCAAAGATATGT+TGG | 0.421190 | 4.1:+41817055 | MS.gene09379:CDS |
| CACAACTAACACTACTGCTC+CGG | 0.433275 | 4.1:+41817485 | MS.gene09379:CDS |
| TCAACACAAGAGGGCGGATC+AGG | 0.435640 | 4.1:+41817402 | MS.gene09379:CDS |
| GAGATAGCTACAAATGTGTT+AGG | 0.438755 | 4.1:+41815936 | MS.gene09379:CDS |
| AATTGTTTAGGAGCTCTTGA+TGG | 0.441154 | 4.1:+41815852 | MS.gene09379:CDS |
| GGATTTCTTACTCCTTATAG+AGG | 0.449800 | 4.1:+41816200 | MS.gene09379:CDS |
| TGAAATTAGTGGACGAGGGT+TGG | 0.454770 | 4.1:+41816898 | MS.gene09379:CDS |
| GCAACATGTCACATAGTTTG+TGG | 0.463824 | 4.1:-41815581 | None:intergenic |
| TTGGGTGAGATTTATGCTAA+TGG | 0.472566 | 4.1:+41817630 | MS.gene09379:CDS |
| AAAGATGATTGTAGTAGAGA+AGG | 0.475736 | 4.1:+41817115 | MS.gene09379:CDS |
| ATACTCCTGGCTTGAGGAAG+CGG | 0.479782 | 4.1:+41817835 | MS.gene09379:CDS |
| GATGCTATTTCTCGACCAAA+TGG | 0.486765 | 4.1:+41816038 | MS.gene09379:CDS |
| CACCTTAGTGAGTGGAGGAA+TGG | 0.492062 | 4.1:+41816233 | MS.gene09379:CDS |
| TGGCTTGCGTTGAAAATACA+AGG | 0.493139 | 4.1:+41815541 | MS.gene09379:CDS |
| ATCCATTCCTCCACTCACTA+AGG | 0.493857 | 4.1:-41816235 | None:intergenic |
| CACCCAAAACCACTTGCACC+TGG | 0.494386 | 4.1:-41817080 | None:intergenic |
| TATATTCACAACAAATTCCC+AGG | 0.506595 | 4.1:+41816972 | MS.gene09379:CDS |
| AGAAGGAGATTTATCGTCAA+TGG | 0.515104 | 4.1:+41817132 | MS.gene09379:CDS |
| ATTTCCACACTATGATAGCT+TGG | 0.519974 | 4.1:+41817290 | MS.gene09379:CDS |
| TGAAGAAGATGGAGTATTGG+TGG | 0.524039 | 4.1:+41816866 | MS.gene09379:CDS |
| TCCTGAAGAAGATGGAGTAT+TGG | 0.524913 | 4.1:+41816863 | MS.gene09379:CDS |
| CAATGGACTCCTGAAGAAGA+TGG | 0.527689 | 4.1:+41816855 | MS.gene09379:CDS |
| TCACTCTTGATTCAATATGT+GGG | 0.528294 | 4.1:-41817013 | None:intergenic |
| GAAGATGGAGTATTGGTGGA+AGG | 0.531767 | 4.1:+41816870 | MS.gene09379:CDS |
| TCTGCAATCAAAGATATGTT+GGG | 0.532433 | 4.1:+41817056 | MS.gene09379:CDS |
| AGGTAGATATAGAACAAGGA+AGG | 0.535159 | 4.1:+41815911 | MS.gene09379:CDS |
| ATCAAAGATATGTTGGGTCC+AGG | 0.536960 | 4.1:+41817062 | MS.gene09379:CDS |
| ACAAACCGCTTCCTCAAGCC+AGG | 0.540000 | 4.1:-41817840 | None:intergenic |
| TTATACAAGCCAACTGCGGT+AGG | 0.541574 | 4.1:-41817261 | None:intergenic |
| GGTCTGGTGAAACGATTAGT+AGG | 0.541722 | 4.1:+41815721 | MS.gene09379:CDS |
| TCCAAAGCTTTAGTGTACCC+AGG | 0.543054 | 4.1:-41816945 | None:intergenic |
| GTCTGATGAAGAAGTGGTAA+TGG | 0.546068 | 4.1:+41817758 | MS.gene09379:CDS |
| ACAACTAACACTACTGCTCC+GGG | 0.546071 | 4.1:+41817486 | MS.gene09379:CDS |
| ACGAGAAACACACAGCTGAT+AGG | 0.548293 | 4.1:+41817694 | MS.gene09379:CDS |
| ATTATAGGAACGGAAAGCGT+GGG | 0.548490 | 4.1:+41817547 | MS.gene09379:CDS |
| TTCTCTGATGAAGTCATGTC+CGG | 0.548643 | 4.1:+41816488 | MS.gene09379:CDS |
| TGTGATGCTGGATACATGAA+TGG | 0.550292 | 4.1:+41816173 | MS.gene09379:CDS |
| CATTGATATGACTATTGAGA+TGG | 0.551195 | 4.1:+41817362 | MS.gene09379:CDS |
| GATAAAGCAGATGGTACTGT+AGG | 0.551746 | 4.1:+41817330 | MS.gene09379:CDS |
| GGAGCAGTAGTGTTAGTTGT+GGG | 0.552884 | 4.1:-41817483 | None:intergenic |
| ATTAGTGGACGAGGGTTGGA+AGG | 0.552892 | 4.1:+41816902 | MS.gene09379:CDS |
| TCTCCTAAATTCATTTCCAA+AGG | 0.553553 | 4.1:-41816458 | None:intergenic |
| ATATGAAACATTCTTCAGCT+AGG | 0.555082 | 4.1:+41816288 | MS.gene09379:CDS |
| CACTCTTGATTCAATATGTG+GGG | 0.559793 | 4.1:-41817012 | None:intergenic |
| TTTGTTGAAATTAGTGGACG+AGG | 0.562026 | 4.1:+41816893 | MS.gene09379:CDS |
| GATGCAAACTCATTTAAACC+TGG | 0.563444 | 4.1:+41816927 | MS.gene09379:CDS |
| TCTTGATGGCACTTACATCA+AGG | 0.564289 | 4.1:+41815866 | MS.gene09379:CDS |
| AATTATAGGAACGGAAAGCG+TGG | 0.572400 | 4.1:+41817546 | MS.gene09379:CDS |
| GACATGTTGCAAGTTATTGG+TGG | 0.572683 | 4.1:+41815594 | MS.gene09379:CDS |
| TTACTCCTTATAGAGGTCAA+AGG | 0.573713 | 4.1:+41816207 | MS.gene09379:CDS |
| TAGTAGAATCACGTTGTGGT+TGG | 0.574703 | 4.1:-41817524 | None:intergenic |
| TATTCGCAAAGAAATGACAT+TGG | 0.576923 | 4.1:+41816433 | MS.gene09379:CDS |
| CACCGTAGTTATCATGTCAC+CGG | 0.578583 | 4.1:-41816507 | None:intergenic |
| CGGAGCAGTAGTGTTAGTTG+TGG | 0.579402 | 4.1:-41817484 | None:intergenic |
| ACACATGTGTGTGGAGGAGT+TGG | 0.585582 | 4.1:+41815632 | MS.gene09379:CDS |
| TTTGGAAAAGATAAAGCAGA+TGG | 0.586596 | 4.1:+41817321 | MS.gene09379:CDS |
| TATACAAGCCAACTGCGGTA+GGG | 0.587340 | 4.1:-41817260 | None:intergenic |
| TGGTTTGTTGGATTTGAACC+CGG | 0.587761 | 4.1:-41817504 | None:intergenic |
| TTGTTGAAATTAGTGGACGA+GGG | 0.590054 | 4.1:+41816894 | MS.gene09379:CDS |
| TTACATCAAGGTCAATGTGC+CGG | 0.590931 | 4.1:+41815878 | MS.gene09379:CDS |
| TAAGAATCACAAAGCGACAA+TGG | 0.591726 | 4.1:+41816838 | MS.gene09379:CDS |
| GCAGCTGATCCCTCCCAACC+AGG | 0.594468 | 4.1:-41815996 | None:intergenic |
| ATGCAAACTCATTTAAACCT+GGG | 0.599381 | 4.1:+41816928 | MS.gene09379:CDS |
| ATGTTGGGTCCAGGTGCAAG+TGG | 0.603177 | 4.1:+41817071 | MS.gene09379:CDS |
| GATTCTACTAATTATAGGAA+CGG | 0.604046 | 4.1:+41817537 | MS.gene09379:CDS |
| CAATGGATACTCCTGGCTTG+AGG | 0.604084 | 4.1:+41817829 | MS.gene09379:CDS |
| GAGTTGTTGAATAGATGGAC+GGG | 0.607031 | 4.1:+41816796 | MS.gene09379:intron |
| GATGAAGAAGTGGTAATGGC+TGG | 0.607200 | 4.1:+41817762 | MS.gene09379:CDS |
| AATGGTTTAAAGGTTCCTCA+AGG | 0.609493 | 4.1:+41816056 | MS.gene09379:CDS |
| TATGACTATTGAGATGGAGA+AGG | 0.615365 | 4.1:+41817368 | MS.gene09379:CDS |
| CAGTCTCACCCTACCGCAGT+TGG | 0.617770 | 4.1:+41817252 | MS.gene09379:intron |
| AAAGGTATCACCTTAGTGAG+TGG | 0.618563 | 4.1:+41816225 | MS.gene09379:CDS |
| GGTAGATATAGAACAAGGAA+GGG | 0.618775 | 4.1:+41815912 | MS.gene09379:CDS |
| AAATGTTCAATCAACACAAG+AGG | 0.626386 | 4.1:+41817392 | MS.gene09379:CDS |
| AGAAACACACAGCTGATAGG+AGG | 0.626406 | 4.1:+41817697 | MS.gene09379:CDS |
| GCTGGATACATGAATGGAGA+AGG | 0.632475 | 4.1:+41816179 | MS.gene09379:CDS |
| GATTTATCGTCAATGGTGCA+AGG | 0.635917 | 4.1:+41817139 | MS.gene09379:CDS |
| TGAGTTGTTGAATAGATGGA+CGG | 0.636038 | 4.1:+41816795 | MS.gene09379:intron |
| TCCTACTCGACACATGTGTG+TGG | 0.639193 | 4.1:+41815623 | MS.gene09379:CDS |
| GTCCGGTGACATGATAACTA+CGG | 0.641608 | 4.1:+41816505 | MS.gene09379:CDS |
| GGTATCACCTTAGTGAGTGG+AGG | 0.642466 | 4.1:+41816228 | MS.gene09379:CDS |
| AGGATTGTCTGATGAAGAAG+TGG | 0.642904 | 4.1:+41817752 | MS.gene09379:CDS |
| TTATAGGAACGGAAAGCGTG+GGG | 0.650988 | 4.1:+41817548 | MS.gene09379:CDS |
| TACTCGACACATGTGTGTGG+AGG | 0.653616 | 4.1:+41815626 | MS.gene09379:CDS |
| AATGTTCAATCAACACAAGA+GGG | 0.654380 | 4.1:+41817393 | MS.gene09379:CDS |
| TTGCGTTGAAAATACAAGGA+TGG | 0.654392 | 4.1:+41815545 | MS.gene09379:CDS |
| AGGGCAACACAGACGAACGA+TGG | 0.667738 | 4.1:+41815817 | MS.gene09379:CDS |
| GTATCCAAGCTATCATAGTG+TGG | 0.667913 | 4.1:-41817294 | None:intergenic |
| TAATTAGTAGAATCACGTTG+TGG | 0.667964 | 4.1:-41817528 | None:intergenic |
| TCCACACACATGTGTCGAGT+AGG | 0.675300 | 4.1:-41815624 | None:intergenic |
| AATGTGCCGGAAGCTGACAA+AGG | 0.679136 | 4.1:+41815891 | MS.gene09379:CDS |
| ACAAAGGTAGATATAGAACA+AGG | 0.691343 | 4.1:+41815907 | MS.gene09379:CDS |
| GTTCAATCAACACAAGAGGG+CGG | 0.700627 | 4.1:+41817396 | MS.gene09379:CDS |
| TATAGGAACGGAAAGCGTGG+GGG | 0.729484 | 4.1:+41817549 | MS.gene09379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTAGATATATTTAAT+AGG | + | chr4.1:41816567-41816586 | MS.gene09379:intron | 10.0% |
| !!! | AAATACTTTAAAAATTGTTT+AGG | + | chr4.1:41815840-41815859 | MS.gene09379:CDS | 10.0% |
| !! | TTCATATTGAAAAATTCTTT+AGG | - | chr4.1:41816275-41816294 | None:intergenic | 15.0% |
| !!! | ACTTCAATTTTATTTATGAT+AGG | + | chr4.1:41816137-41816156 | MS.gene09379:intron | 15.0% |
| !!! | CTTCAATTTTATTTATGATA+GGG | + | chr4.1:41816138-41816157 | MS.gene09379:intron | 15.0% |
| !!! | TCTATTTTAAAAGAAATTGA+AGG | + | chr4.1:41817732-41817751 | MS.gene09379:CDS | 15.0% |
| !! | ACATATATGAATTGTAAATC+TGG | - | chr4.1:41815972-41815991 | None:intergenic | 20.0% |
| !! | CATTAGATATATTTAATAGG+TGG | + | chr4.1:41816570-41816589 | MS.gene09379:intron | 20.0% |
| !! | TATCATGAATTTATCAATTG+TGG | - | chr4.1:41817184-41817203 | None:intergenic | 20.0% |
| !! | TATTATTATTTATGTGATGC+TGG | + | chr4.1:41816161-41816180 | MS.gene09379:CDS | 20.0% |
| !! | TCAAATTCATTGAACAAATT+GGG | + | chr4.1:41817612-41817631 | MS.gene09379:CDS | 20.0% |
| !!! | AATGTAATAGAAAGATGTTT+TGG | + | chr4.1:41816311-41816330 | MS.gene09379:CDS | 20.0% |
| !!! | CTTTTAAAATAGAGACAATT+TGG | - | chr4.1:41817725-41817744 | None:intergenic | 20.0% |
| ! | AACGTGATTCTACTAATTAT+AGG | + | chr4.1:41817532-41817551 | MS.gene09379:CDS | 25.0% |
| ! | GATTCTACTAATTATAGGAA+CGG | + | chr4.1:41817537-41817556 | MS.gene09379:CDS | 25.0% |
| ! | GCATTTCAGTAATGTATTAT+TGG | + | chr4.1:41815743-41815762 | MS.gene09379:CDS | 25.0% |
| ! | GTCAAATTCATTGAACAAAT+TGG | + | chr4.1:41817611-41817630 | MS.gene09379:CDS | 25.0% |
| ! | TGCCAATATATGTAAAAACA+TGG | - | chr4.1:41815661-41815680 | None:intergenic | 25.0% |
| !! | AAAAATTCTTTAGGAGTAGA+TGG | - | chr4.1:41816266-41816285 | None:intergenic | 25.0% |
| !! | AAAACAACCTAAACCAATTT+TGG | + | chr4.1:41815794-41815813 | MS.gene09379:CDS | 25.0% |
| !! | AGCATATTTTGCATAGTTTA+TGG | + | chr4.1:41816108-41816127 | MS.gene09379:intron | 25.0% |
| !! | ATTTATACTTTTGTACCTTG+AGG | - | chr4.1:41816074-41816093 | None:intergenic | 25.0% |
| !! | TGATTAGAAGACAATTTGTT+AGG | + | chr4.1:41815700-41815719 | MS.gene09379:CDS | 25.0% |
| !! | TTTTATCCTGTAAAAACTCA+AGG | + | chr4.1:41816374-41816393 | MS.gene09379:CDS | 25.0% |
| AAAGATGATTGTAGTAGAGA+AGG | + | chr4.1:41817115-41817134 | MS.gene09379:CDS | 30.0% | |
| AAATGTTCAATCAACACAAG+AGG | + | chr4.1:41817392-41817411 | MS.gene09379:CDS | 30.0% | |
| AATGTTCAATCAACACAAGA+GGG | + | chr4.1:41817393-41817412 | MS.gene09379:CDS | 30.0% | |
| ACAAAGGTAGATATAGAACA+AGG | + | chr4.1:41815907-41815926 | MS.gene09379:CDS | 30.0% | |
| ATATGAAACATTCTTCAGCT+AGG | + | chr4.1:41816288-41816307 | MS.gene09379:CDS | 30.0% | |
| ATGCAAACTCATTTAAACCT+GGG | + | chr4.1:41816928-41816947 | MS.gene09379:CDS | 30.0% | |
| CATTGATATGACTATTGAGA+TGG | + | chr4.1:41817362-41817381 | MS.gene09379:CDS | 30.0% | |
| GATATATTTAATAGGTGGAG+AGG | + | chr4.1:41816575-41816594 | MS.gene09379:intron | 30.0% | |
| TAATTAGTAGAATCACGTTG+TGG | - | chr4.1:41817531-41817550 | None:intergenic | 30.0% | |
| TATATTCACAACAAATTCCC+AGG | + | chr4.1:41816972-41816991 | MS.gene09379:CDS | 30.0% | |
| TATTCGCAAAGAAATGACAT+TGG | + | chr4.1:41816433-41816452 | MS.gene09379:CDS | 30.0% | |
| TCACTCTTGATTCAATATGT+GGG | - | chr4.1:41817016-41817035 | None:intergenic | 30.0% | |
| TCTCCTAAATTCATTTCCAA+AGG | - | chr4.1:41816461-41816480 | None:intergenic | 30.0% | |
| TCTGCAATCAAAGATATGTT+GGG | + | chr4.1:41817056-41817075 | MS.gene09379:CDS | 30.0% | |
| TTCACTCTTGATTCAATATG+TGG | - | chr4.1:41817017-41817036 | None:intergenic | 30.0% | |
| TTCTGCAATCAAAGATATGT+TGG | + | chr4.1:41817055-41817074 | MS.gene09379:CDS | 30.0% | |
| TTGTGAAAAAATAGTCGCAA+AGG | - | chr4.1:41817812-41817831 | None:intergenic | 30.0% | |
| TTTGGAAAAGATAAAGCAGA+TGG | + | chr4.1:41817321-41817340 | MS.gene09379:CDS | 30.0% | |
| ! | ATTCTTCCTTGAGTTTTTAC+AGG | - | chr4.1:41816383-41816402 | None:intergenic | 30.0% |
| ! | CAATTCATATATGTTTTGCC+TGG | + | chr4.1:41815978-41815997 | MS.gene09379:CDS | 30.0% |
| ! | GATCCTTTGGAAATGAATTT+AGG | + | chr4.1:41816455-41816474 | MS.gene09379:CDS | 30.0% |
| ! | TTGTTGAGTTGTTGAATAGA+TGG | + | chr4.1:41816791-41816810 | MS.gene09379:intron | 30.0% |
| !! | AGATGTTTTGGACTTTTGAA+AGG | + | chr4.1:41816323-41816342 | MS.gene09379:CDS | 30.0% |
| !! | CGCCATGTTTTTACATATAT+TGG | + | chr4.1:41815656-41815675 | MS.gene09379:CDS | 30.0% |
| !! | TTTTGAGTAACAATGGTTCT+AGG | + | chr4.1:41817871-41817890 | MS.gene09379:CDS | 30.0% |
| !!! | GACATTGTTTTGAGTAACAA+TGG | + | chr4.1:41817864-41817883 | MS.gene09379:CDS | 30.0% |
| !!! | TTGCGACTATTTTTTCACAA+TGG | + | chr4.1:41817812-41817831 | MS.gene09379:CDS | 30.0% |
| !!! | TTTTTTATACAAGCCAACTG+CGG | - | chr4.1:41817268-41817287 | None:intergenic | 30.0% |
| AAGCTATCATAGTGTGGAAA+TGG | - | chr4.1:41817291-41817310 | None:intergenic | 35.0% | |
| AATGGTTTAAAGGTTCCTCA+AGG | + | chr4.1:41816056-41816075 | MS.gene09379:CDS | 35.0% | |
| AATTGTTTAGGAGCTCTTGA+TGG | + | chr4.1:41815852-41815871 | MS.gene09379:CDS | 35.0% | |
| AGAAATGACATTGGATCCTT+TGG | + | chr4.1:41816442-41816461 | MS.gene09379:CDS | 35.0% | |
| AGAAGGAGATTTATCGTCAA+TGG | + | chr4.1:41817132-41817151 | MS.gene09379:CDS | 35.0% | |
| AGGTAGATATAGAACAAGGA+AGG | + | chr4.1:41815911-41815930 | MS.gene09379:CDS | 35.0% | |
| ATATTTAATAGGTGGAGAGG+TGG | + | chr4.1:41816578-41816597 | MS.gene09379:intron | 35.0% | |
| ATTTCCACACTATGATAGCT+TGG | + | chr4.1:41817290-41817309 | MS.gene09379:CDS | 35.0% | |
| CACTCTTGATTCAATATGTG+GGG | - | chr4.1:41817015-41817034 | None:intergenic | 35.0% | |
| GAGATAGCTACAAATGTGTT+AGG | + | chr4.1:41815936-41815955 | MS.gene09379:CDS | 35.0% | |
| GATAGCTTGGATACTGTATT+TGG | + | chr4.1:41817303-41817322 | MS.gene09379:CDS | 35.0% | |
| GATGCAAACTCATTTAAACC+TGG | + | chr4.1:41816927-41816946 | MS.gene09379:CDS | 35.0% | |
| GGATTTCTTACTCCTTATAG+AGG | + | chr4.1:41816200-41816219 | MS.gene09379:CDS | 35.0% | |
| GGTAGATATAGAACAAGGAA+GGG | + | chr4.1:41815912-41815931 | MS.gene09379:CDS | 35.0% | |
| TAAGAATCACAAAGCGACAA+TGG | + | chr4.1:41816838-41816857 | MS.gene09379:CDS | 35.0% | |
| TATGACTATTGAGATGGAGA+AGG | + | chr4.1:41817368-41817387 | MS.gene09379:CDS | 35.0% | |
| TGAGGAACCTTTAAACCATT+TGG | - | chr4.1:41816056-41816075 | None:intergenic | 35.0% | |
| TGAGTTGTTGAATAGATGGA+CGG | + | chr4.1:41816795-41816814 | MS.gene09379:intron | 35.0% | |
| TGATACCTTTGACCTCTATA+AGG | - | chr4.1:41816215-41816234 | None:intergenic | 35.0% | |
| TGTGACATGTTGCAAGTTAT+TGG | + | chr4.1:41815591-41815610 | MS.gene09379:CDS | 35.0% | |
| TTACTCCTTATAGAGGTCAA+AGG | + | chr4.1:41816207-41816226 | MS.gene09379:CDS | 35.0% | |
| TTCTCGACCAAATGGTTTAA+AGG | + | chr4.1:41816046-41816065 | MS.gene09379:CDS | 35.0% | |
| TTGCGTTGAAAATACAAGGA+TGG | + | chr4.1:41815545-41815564 | MS.gene09379:CDS | 35.0% | |
| TTGGGTGAGATTTATGCTAA+TGG | + | chr4.1:41817630-41817649 | MS.gene09379:CDS | 35.0% | |
| ! | ACAACCTAAACCAATTTTGG+AGG | + | chr4.1:41815797-41815816 | MS.gene09379:CDS | 35.0% |
| ! | CAACCTAAACCAATTTTGGA+GGG | + | chr4.1:41815798-41815817 | MS.gene09379:CDS | 35.0% |
| ! | CATATATGTTTTGCCTGGTT+GGG | + | chr4.1:41815983-41816002 | MS.gene09379:CDS | 35.0% |
| ! | TCATATATGTTTTGCCTGGT+TGG | + | chr4.1:41815982-41816001 | MS.gene09379:CDS | 35.0% |
| ! | TTGTTGAAATTAGTGGACGA+GGG | + | chr4.1:41816894-41816913 | MS.gene09379:CDS | 35.0% |
| ! | TTTGTTGAAATTAGTGGACG+AGG | + | chr4.1:41816893-41816912 | MS.gene09379:CDS | 35.0% |
| ! | TTTTTCACAATGGATACTCC+TGG | + | chr4.1:41817822-41817841 | MS.gene09379:CDS | 35.0% |
| !! | AGAAGACAATTTGTTAGGTC+TGG | + | chr4.1:41815705-41815724 | MS.gene09379:CDS | 35.0% |
| !! | GGAAGGTTTGTTGAAATTAG+TGG | + | chr4.1:41816887-41816906 | MS.gene09379:CDS | 35.0% |
| AATTATAGGAACGGAAAGCG+TGG | + | chr4.1:41817546-41817565 | MS.gene09379:CDS | 40.0% | |
| ACCAATACTCCATCTTCTTC+AGG | - | chr4.1:41816867-41816886 | None:intergenic | 40.0% | |
| AGGATTGTCTGATGAAGAAG+TGG | + | chr4.1:41817752-41817771 | MS.gene09379:CDS | 40.0% | |
| ATCAAAGATATGTTGGGTCC+AGG | + | chr4.1:41817062-41817081 | MS.gene09379:CDS | 40.0% | |
| GACATGTTGCAAGTTATTGG+TGG | + | chr4.1:41815594-41815613 | MS.gene09379:CDS | 40.0% | |
| GAGTTGTTGAATAGATGGAC+GGG | + | chr4.1:41816796-41816815 | MS.gene09379:intron | 40.0% | |
| GATAAAGCAGATGGTACTGT+AGG | + | chr4.1:41817330-41817349 | MS.gene09379:CDS | 40.0% | |
| GATTTATCGTCAATGGTGCA+AGG | + | chr4.1:41817139-41817158 | MS.gene09379:CDS | 40.0% | |
| GCAACATGTCACATAGTTTG+TGG | - | chr4.1:41815584-41815603 | None:intergenic | 40.0% | |
| GTATCCAAGCTATCATAGTG+TGG | - | chr4.1:41817297-41817316 | None:intergenic | 40.0% | |
| GTCGAGAAATAGCATCTCTA+AGG | - | chr4.1:41816034-41816053 | None:intergenic | 40.0% | |
| GTCGCAAAGGTTATTGTCTT+TGG | - | chr4.1:41817799-41817818 | None:intergenic | 40.0% | |
| GTCTGATGAAGAAGTGGTAA+TGG | + | chr4.1:41817758-41817777 | MS.gene09379:CDS | 40.0% | |
| TAGTAGAATCACGTTGTGGT+TGG | - | chr4.1:41817527-41817546 | None:intergenic | 40.0% | |
| TATCTACCTTTGTCAGCTTC+CGG | - | chr4.1:41815900-41815919 | None:intergenic | 40.0% | |
| TCCTGAAGAAGATGGAGTAT+TGG | + | chr4.1:41816863-41816882 | MS.gene09379:CDS | 40.0% | |
| TGTGATGCTGGATACATGAA+TGG | + | chr4.1:41816173-41816192 | MS.gene09379:CDS | 40.0% | |
| TTACATCAAGGTCAATGTGC+CGG | + | chr4.1:41815878-41815897 | MS.gene09379:CDS | 40.0% | |
| TTCTCTGATGAAGTCATGTC+CGG | + | chr4.1:41816488-41816507 | MS.gene09379:CDS | 40.0% | |
| ! | ATTATAGGAACGGAAAGCGT+GGG | + | chr4.1:41817547-41817566 | MS.gene09379:CDS | 40.0% |
| ! | TAGCTTTTAGTGTGCAACCT+GGG | - | chr4.1:41816992-41817011 | None:intergenic | 40.0% |
| ! | TCTTGATGGCACTTACATCA+AGG | + | chr4.1:41815866-41815885 | MS.gene09379:CDS | 40.0% |
| ! | TGGCTTGCGTTGAAAATACA+AGG | + | chr4.1:41815541-41815560 | MS.gene09379:CDS | 40.0% |
| ! | TTGCCCTCCAAAATTGGTTT+AGG | - | chr4.1:41815804-41815823 | None:intergenic | 40.0% |
| !! | AAAGGTATCACCTTAGTGAG+TGG | + | chr4.1:41816225-41816244 | MS.gene09379:CDS | 40.0% |
| !! | GATGCTATTTCTCGACCAAA+TGG | + | chr4.1:41816038-41816057 | MS.gene09379:CDS | 40.0% |
| !! | TGAAGAAGATGGAGTATTGG+TGG | + | chr4.1:41816866-41816885 | MS.gene09379:CDS | 40.0% |
| !! | TGGACTTTTGAAAGGACGTT+GGG | + | chr4.1:41816331-41816350 | MS.gene09379:CDS | 40.0% |
| !! | TGGTTTGTTGGATTTGAACC+CGG | - | chr4.1:41817507-41817526 | None:intergenic | 40.0% |
| !! | TTGGACTTTTGAAAGGACGT+TGG | + | chr4.1:41816330-41816349 | MS.gene09379:CDS | 40.0% |
| ACAACTAACACTACTGCTCC+GGG | + | chr4.1:41817486-41817505 | MS.gene09379:CDS | 45.0% | |
| ACCTGGGTACACTAAAGCTT+TGG | + | chr4.1:41816944-41816963 | MS.gene09379:CDS | 45.0% | |
| ACGAGAAACACACAGCTGAT+AGG | + | chr4.1:41817694-41817713 | MS.gene09379:CDS | 45.0% | |
| AGAAACACACAGCTGATAGG+AGG | + | chr4.1:41817697-41817716 | MS.gene09379:CDS | 45.0% | |
| ATCCATTCCTCCACTCACTA+AGG | - | chr4.1:41816238-41816257 | None:intergenic | 45.0% | |
| CAAGTACGACATGGAGTCAA+TGG | + | chr4.1:41816534-41816553 | MS.gene09379:intron | 45.0% | |
| CACAACTAACACTACTGCTC+CGG | + | chr4.1:41817485-41817504 | MS.gene09379:CDS | 45.0% | |
| CACCGTAGTTATCATGTCAC+CGG | - | chr4.1:41816510-41816529 | None:intergenic | 45.0% | |
| GCTGGATACATGAATGGAGA+AGG | + | chr4.1:41816179-41816198 | MS.gene09379:CDS | 45.0% | |
| GGAGCAGTAGTGTTAGTTGT+GGG | - | chr4.1:41817486-41817505 | None:intergenic | 45.0% | |
| GGTCTGGTGAAACGATTAGT+AGG | + | chr4.1:41815721-41815740 | MS.gene09379:CDS | 45.0% | |
| GTCCGGTGACATGATAACTA+CGG | + | chr4.1:41816505-41816524 | MS.gene09379:CDS | 45.0% | |
| GTGTTAGTTGTGGGTGTTTC+TGG | - | chr4.1:41817477-41817496 | None:intergenic | 45.0% | |
| GTTCAATCAACACAAGAGGG+CGG | + | chr4.1:41817396-41817415 | MS.gene09379:CDS | 45.0% | |
| TATACAAGCCAACTGCGGTA+GGG | - | chr4.1:41817263-41817282 | None:intergenic | 45.0% | |
| TCTGTGTTGCCCTCCAAAAT+TGG | - | chr4.1:41815810-41815829 | None:intergenic | 45.0% | |
| TTATACAAGCCAACTGCGGT+AGG | - | chr4.1:41817264-41817283 | None:intergenic | 45.0% | |
| ! | ATATGTTTTGCCTGGTTGGG+AGG | + | chr4.1:41815986-41816005 | MS.gene09379:CDS | 45.0% |
| ! | CAATGGACTCCTGAAGAAGA+TGG | + | chr4.1:41816855-41816874 | MS.gene09379:CDS | 45.0% |
| ! | GTAGCTTTTAGTGTGCAACC+TGG | - | chr4.1:41816993-41817012 | None:intergenic | 45.0% |
| ! | TATGTTTTGCCTGGTTGGGA+GGG | + | chr4.1:41815987-41816006 | MS.gene09379:CDS | 45.0% |
| ! | TCCAAAGCTTTAGTGTACCC+AGG | - | chr4.1:41816948-41816967 | None:intergenic | 45.0% |
| ! | TGAAATTAGTGGACGAGGGT+TGG | + | chr4.1:41816898-41816917 | MS.gene09379:CDS | 45.0% |
| ! | TTATAGGAACGGAAAGCGTG+GGG | + | chr4.1:41817548-41817567 | MS.gene09379:CDS | 45.0% |
| !! | CATTGACTCCATGTCGTACT+TGG | - | chr4.1:41816536-41816555 | None:intergenic | 45.0% |
| !! | GAAGATGGAGTATTGGTGGA+AGG | + | chr4.1:41816870-41816889 | MS.gene09379:CDS | 45.0% |
| !! | GATGAAGAAGTGGTAATGGC+TGG | + | chr4.1:41817762-41817781 | MS.gene09379:CDS | 45.0% |
| !! | TCACGTTGTGGTTGGTTTGT+TGG | - | chr4.1:41817519-41817538 | None:intergenic | 45.0% |
| AATGTGCCGGAAGCTGACAA+AGG | + | chr4.1:41815891-41815910 | MS.gene09379:CDS | 50.0% | |
| ACACATGTGTGTGGAGGAGT+TGG | + | chr4.1:41815632-41815651 | MS.gene09379:CDS | 50.0% | |
| CACCTTAGTGAGTGGAGGAA+TGG | + | chr4.1:41816233-41816252 | MS.gene09379:CDS | 50.0% | |
| CGGAGCAGTAGTGTTAGTTG+TGG | - | chr4.1:41817487-41817506 | None:intergenic | 50.0% | |
| CGGTGACATGATAACTACGG+TGG | + | chr4.1:41816508-41816527 | MS.gene09379:intron | 50.0% | |
| GGTATCACCTTAGTGAGTGG+AGG | + | chr4.1:41816228-41816247 | MS.gene09379:CDS | 50.0% | |
| GTAGGGTGAGACTGCGTTAA+AGG | - | chr4.1:41817246-41817265 | None:intergenic | 50.0% | |
| TACTCGACACATGTGTGTGG+AGG | + | chr4.1:41815626-41815645 | MS.gene09379:CDS | 50.0% | |
| TCCACACACATGTGTCGAGT+AGG | - | chr4.1:41815627-41815646 | None:intergenic | 50.0% | |
| TCCTACTCGACACATGTGTG+TGG | + | chr4.1:41815623-41815642 | MS.gene09379:CDS | 50.0% | |
| ! | ATACTCCTGGCTTGAGGAAG+CGG | + | chr4.1:41817835-41817854 | MS.gene09379:CDS | 50.0% |
| ! | ATTAGTGGACGAGGGTTGGA+AGG | + | chr4.1:41816902-41816921 | MS.gene09379:CDS | 50.0% |
| ! | CAATGGATACTCCTGGCTTG+AGG | + | chr4.1:41817829-41817848 | MS.gene09379:CDS | 50.0% |
| ! | GTCCAGGTGCAAGTGGTTTT+GGG | + | chr4.1:41817078-41817097 | MS.gene09379:CDS | 50.0% |
| ! | TATAGGAACGGAAAGCGTGG+GGG | + | chr4.1:41817549-41817568 | MS.gene09379:CDS | 50.0% |
| ACAAACCGCTTCCTCAAGCC+AGG | - | chr4.1:41817843-41817862 | None:intergenic | 55.0% | |
| AGGGCAACACAGACGAACGA+TGG | + | chr4.1:41815817-41815836 | MS.gene09379:CDS | 55.0% | |
| ATGTTGGGTCCAGGTGCAAG+TGG | + | chr4.1:41817071-41817090 | MS.gene09379:CDS | 55.0% | |
| CACCCAAAACCACTTGCACC+TGG | - | chr4.1:41817083-41817102 | None:intergenic | 55.0% | |
| TCAACACAAGAGGGCGGATC+AGG | + | chr4.1:41817402-41817421 | MS.gene09379:CDS | 55.0% | |
| TGGCTTGAGGAAGCGGTTTG+TGG | + | chr4.1:41817842-41817861 | MS.gene09379:CDS | 55.0% | |
| ! | ACGGAAAGCGTGGGGGAAAA+AGG | + | chr4.1:41817556-41817575 | MS.gene09379:CDS | 55.0% |
| ! | CGGAAAGCGTGGGGGAAAAA+GGG | + | chr4.1:41817557-41817576 | MS.gene09379:CDS | 55.0% |
| ! | GGTCCAGGTGCAAGTGGTTT+TGG | + | chr4.1:41817077-41817096 | MS.gene09379:CDS | 55.0% |
| !!! | CAGGTGCAAGTGGTTTTGGG+TGG | + | chr4.1:41817081-41817100 | MS.gene09379:CDS | 55.0% |
| CAGTCTCACCCTACCGCAGT+TGG | + | chr4.1:41817252-41817271 | MS.gene09379:intron | 60.0% | |
| CGGTGGAGCCAAGTACGACA+TGG | + | chr4.1:41816525-41816544 | MS.gene09379:intron | 60.0% | |
| GCAGCTGATCCCTCCCAACC+AGG | - | chr4.1:41815999-41816018 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 41815531 | 41817896 | 41815531 | ID=MS.gene09379 |
| chr4.1 | mRNA | 41815531 | 41817896 | 41815531 | ID=MS.gene09379.t1;Parent=MS.gene09379 |
| chr4.1 | exon | 41815531 | 41816077 | 41815531 | ID=MS.gene09379.t1.exon1;Parent=MS.gene09379.t1 |
| chr4.1 | CDS | 41815531 | 41816077 | 41815531 | ID=cds.MS.gene09379.t1;Parent=MS.gene09379.t1 |
| chr4.1 | exon | 41816159 | 41816526 | 41816159 | ID=MS.gene09379.t1.exon2;Parent=MS.gene09379.t1 |
| chr4.1 | CDS | 41816159 | 41816526 | 41816159 | ID=cds.MS.gene09379.t1;Parent=MS.gene09379.t1 |
| chr4.1 | exon | 41816810 | 41817160 | 41816810 | ID=MS.gene09379.t1.exon3;Parent=MS.gene09379.t1 |
| chr4.1 | CDS | 41816810 | 41817160 | 41816810 | ID=cds.MS.gene09379.t1;Parent=MS.gene09379.t1 |
| chr4.1 | exon | 41817255 | 41817896 | 41817255 | ID=MS.gene09379.t1.exon4;Parent=MS.gene09379.t1 |
| chr4.1 | CDS | 41817255 | 41817896 | 41817255 | ID=cds.MS.gene09379.t1;Parent=MS.gene09379.t1 |
| Gene Sequence |
| Protein sequence |
