AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050855


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050855.t1 MTR_0697s0010 86.834 319 27 2 306 623 1 305 0.0 565
MS.gene050855.t1 MTR_3g075160 66.667 327 107 2 306 632 1 325 3.40e-150 437
MS.gene050855.t1 MTR_3g453160 62.381 210 77 2 423 632 2 209 4.63e-79 249
MS.gene050855.t1 MTR_4g117940 87.736 106 13 0 2 107 71 176 3.01e-65 212
MS.gene050855.t1 MTR_4g055725 47.596 208 89 2 6 213 78 265 2.23e-55 189
MS.gene050855.t1 MTR_1g052620 83.529 85 14 0 539 623 1 85 2.93e-41 149
MS.gene050855.t1 MTR_4g117120 52.985 134 63 0 2 135 149 282 1.92e-38 146
MS.gene050855.t1 MTR_4g117120 46.739 92 38 2 238 328 285 366 5.71e-15 77.4
MS.gene050855.t1 MTR_7g094990 47.857 140 66 3 3 137 70 207 3.78e-25 108
MS.gene050855.t1 MTR_7g094990 43.478 115 51 4 339 452 167 268 1.61e-18 89.0
MS.gene050855.t1 MTR_8g463880 47.619 84 44 0 6 89 64 147 6.51e-17 78.6
MS.gene050855.t1 MTR_7g056633 45.882 85 46 0 6 90 32 116 2.67e-15 73.6
MS.gene050855.t1 MTR_5g063300 45.679 81 44 0 11 91 55 135 1.49e-13 68.9
MS.gene050855.t1 MTR_8g062180 26.360 239 154 8 322 550 68 294 7.53e-12 67.8
MS.gene050855.t1 MTR_1g055365 28.431 204 131 7 295 498 2 190 8.47e-12 68.6
MS.gene050855.t1 MTR_3g045460 31.892 185 108 8 322 498 518 692 1.22e-11 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050855.t1 AT5G41980 39.706 340 177 8 6 340 42 358 1.23e-65 220
MS.gene050855.t1 AT1G43722 36.822 258 144 6 5 246 65 319 7.90e-42 154
MS.gene050855.t1 AT5G35695 39.037 187 96 3 129 314 3 172 1.73e-34 130
MS.gene050855.t1 AT3G30525 35.443 158 96 2 113 264 1 158 2.17e-24 100
MS.gene050855.t1 AT5G28950 47.826 92 45 2 91 181 9 98 3.09e-20 88.2
MS.gene050855.t1 AT3G55350 31.959 194 102 6 108 282 182 364 4.49e-18 87.4
MS.gene050855.t1 AT5G12010 24.149 323 198 9 11 308 180 480 8.05e-16 81.3
MS.gene050855.t1 AT1G30140 26.291 213 141 5 321 527 16 218 2.33e-12 67.4
MS.gene050855.t1 AT1G30140 26.291 213 141 5 321 527 16 218 2.33e-12 67.4
MS.gene050855.t1 AT5G27260 31.469 143 92 4 322 462 17 155 4.91e-11 64.7
MS.gene050855.t1 AT4G29780 25.688 218 138 6 108 312 322 528 5.96e-11 65.9

Find 126 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTAGTTGTGGGTGTTTC+TGG 0.116244 7.3:+4883829 None:intergenic
GTCAAATTCATTGAACAAAT+TGG 0.123596 7.3:-4883692 MS.gene050855:CDS
AAAACAACCTAAACCAATTT+TGG 0.140115 7.3:-4885503 MS.gene050855:CDS
GGTCCAGGTGCAAGTGGTTT+TGG 0.158436 7.3:-4884220 MS.gene050855:CDS
GATAGCTTGGATACTGTATT+TGG 0.169898 7.3:-4883994 MS.gene050855:CDS
TTCTCGACCAAATGGTTTAA+AGG 0.180350 7.3:-4885251 MS.gene050855:CDS
GATCCTTTGGAAATAAATTT+AGG 0.197488 7.3:-4884842 MS.gene050855:CDS
GTCGCAAAGGTTATTGTCTT+TGG 0.283992 7.3:+4883507 None:intergenic
AGAAATGACATTGGATCCTT+TGG 0.284461 7.3:-4884855 MS.gene050855:CDS
TCTGTGTTGCCCTCCAAAAT+TGG 0.291608 7.3:+4885490 None:intergenic
TGTGACATGTTGCAAGTTAT+TGG 0.297963 7.3:-4885706 MS.gene050855:CDS
GCATTTCAGTAATGTATTAT+TGG 0.314714 7.3:-4885554 MS.gene050855:CDS
TGATTAGAAGACAATTTGTT+AGG 0.357825 7.3:-4885597 MS.gene050855:CDS
AATTATTTACATGAGTGATT+TGG 0.358633 7.3:-4885776 None:intergenic
TTGCCCTCCAAAATTGGTTT+AGG 0.360631 7.3:+4885496 None:intergenic
AATGTAATAGAAAGATGTTT+TGG 0.366224 7.3:-4884986 MS.gene050855:CDS
TTCACTCTTGATTCAATATG+TGG 0.370372 7.3:+4884283 None:intergenic
ACATATATGAATTGTAAATC+TGG 0.373490 7.3:+4885328 None:intergenic
TGAGGAACCTTTAAACCATT+TGG 0.379841 7.3:+4885244 None:intergenic
TATCTACCTTTGTCAGCTTC+CGG 0.382459 7.3:+4885400 None:intergenic
TGGCTTGAGGAAGCGGTTTG+TGG 0.384622 7.3:-4883461 MS.gene050855:CDS
TCAAATTCATTGAACAAATT+GGG 0.385007 7.3:-4883691 MS.gene050855:CDS
AGAAGACAATTTGTTAGGTC+TGG 0.394249 7.3:-4885592 MS.gene050855:CDS
ACCAATACTCCATCTTCTTC+AGG 0.398208 7.3:+4884433 None:intergenic
TGATACCTTTGACCTCTATA+AGG 0.398826 7.3:+4885085 None:intergenic
ACCTGGGTACACTAAAGCTT+TGG 0.401458 7.3:-4884353 MS.gene050855:CDS
TATTATTATTTATGTGATGC+TGG 0.401796 7.3:-4885136 MS.gene050855:CDS
GTCGAGAAATAGCATCTCTA+AGG 0.403893 7.3:+4885266 None:intergenic
AACGTGATTCTACTAATTAT+AGG 0.406136 7.3:-4883771 MS.gene050855:CDS
GGAAGGTTTGTTGAAATTAG+TGG 0.408222 7.3:-4884410 MS.gene050855:CDS
TCACGTTGTGGTTGGTTTGT+TGG 0.419442 7.3:+4883787 None:intergenic
AAGCTATCATAGTGTGGAAA+TGG 0.420710 7.3:+4884009 None:intergenic
TTCTGCAATCAAAGATATGT+TGG 0.421190 7.3:-4884242 MS.gene050855:CDS
CACAACTAACACTACTGCTC+CGG 0.433275 7.3:-4883818 MS.gene050855:CDS
TCAACACAAGAGGGCGGATC+AGG 0.435640 7.3:-4883895 MS.gene050855:CDS
GAGATAGCTACAAATGTGTT+AGG 0.438755 7.3:-4885361 MS.gene050855:CDS
GGATTTCTTACTCCTTATAG+AGG 0.449800 7.3:-4885097 MS.gene050855:CDS
TGAAATTAGTGGACGAGGGT+TGG 0.454770 7.3:-4884399 MS.gene050855:CDS
GCAACATGTCACATAGTTTG+TGG 0.463824 7.3:+4885716 None:intergenic
TTGGGTGAGATTTATGCTAA+TGG 0.472566 7.3:-4883673 MS.gene050855:CDS
AAAGATGATTGTAGTAGAGA+AGG 0.475736 7.3:-4884182 MS.gene050855:CDS
ATACTCCTGGCTTGAGGAAG+CGG 0.479782 7.3:-4883468 MS.gene050855:CDS
GATGCTATTTCTCGACCAAA+TGG 0.486765 7.3:-4885259 MS.gene050855:CDS
CACCTTAGTGAGTGGAGGAA+TGG 0.492062 7.3:-4885064 MS.gene050855:CDS
TGGCTTGCGTTGAAAATACA+AGG 0.493139 7.3:-4885756 MS.gene050855:CDS
ATCCATTCCTCCACTCACTA+AGG 0.493857 7.3:+4885062 None:intergenic
CACCCAAAACCACTTGCACC+TGG 0.494386 7.3:+4884217 None:intergenic
TCTCCTAAATTTATTTCCAA+AGG 0.503604 7.3:+4884839 None:intergenic
TATATTCACAACAAATTCCC+AGG 0.506595 7.3:-4884325 MS.gene050855:CDS
AATTGTGTAGGAGCTCTTGA+TGG 0.511250 7.3:-4885445 MS.gene050855:CDS
AGAAGGAGATTTATCGTCAA+TGG 0.515104 7.3:-4884165 MS.gene050855:CDS
ATTTCCACACTATGATAGCT+TGG 0.519974 7.3:-4884007 MS.gene050855:CDS
TGAAGAAGATGGAGTATTGG+TGG 0.524039 7.3:-4884431 MS.gene050855:CDS
TCCTGAAGAAGATGGAGTAT+TGG 0.524913 7.3:-4884434 MS.gene050855:CDS
CAATGGACTCCTGAAGAAGA+TGG 0.527689 7.3:-4884442 MS.gene050855:CDS
TCACTCTTGATTCAATATGT+GGG 0.528294 7.3:+4884284 None:intergenic
GAAGATGGAGTATTGGTGGA+AGG 0.531767 7.3:-4884427 MS.gene050855:CDS
TCTGCAATCAAAGATATGTT+GGG 0.532433 7.3:-4884241 MS.gene050855:CDS
AGGTAGATATAGAACAAGGA+AGG 0.535159 7.3:-4885386 MS.gene050855:CDS
ATCAAAGATATGTTGGGTCC+AGG 0.536960 7.3:-4884235 MS.gene050855:CDS
ACAAACCGCTTCCTCAAGCC+AGG 0.540000 7.3:+4883463 None:intergenic
TTATACAAGCCAACTGCGGT+AGG 0.541574 7.3:+4884036 None:intergenic
GGTCTGGTGAAACGATTAGT+AGG 0.541722 7.3:-4885576 MS.gene050855:CDS
TCCAAAGCTTTAGTGTACCC+AGG 0.543054 7.3:+4884352 None:intergenic
GTCTGATGAAGAAGTGGTAA+TGG 0.546068 7.3:-4883545 MS.gene050855:CDS
ACAACTAACACTACTGCTCC+GGG 0.546071 7.3:-4883817 MS.gene050855:CDS
ACGAGAAACACACAGCTGAT+AGG 0.548293 7.3:-4883609 MS.gene050855:CDS
ATTATAGGAACGGAAAGCGT+GGG 0.548490 7.3:-4883756 MS.gene050855:CDS
TTCTCTGATGAAGTCATGTC+CGG 0.548643 7.3:-4884809 MS.gene050855:CDS
TGTGATGCTGGATACATGAA+TGG 0.550292 7.3:-4885124 MS.gene050855:CDS
CATTGATATGACTATTGAGA+TGG 0.551195 7.3:-4883935 MS.gene050855:CDS
GATAAAGCAGATGGTACTGT+AGG 0.551746 7.3:-4883967 MS.gene050855:CDS
GGAGCAGTAGTGTTAGTTGT+GGG 0.552884 7.3:+4883820 None:intergenic
ATTAGTGGACGAGGGTTGGA+AGG 0.552892 7.3:-4884395 MS.gene050855:CDS
ATATGAAACATTCTTCAGCT+AGG 0.555082 7.3:-4885009 MS.gene050855:CDS
CACTCTTGATTCAATATGTG+GGG 0.559793 7.3:+4884285 None:intergenic
TTTGTTGAAATTAGTGGACG+AGG 0.562026 7.3:-4884404 MS.gene050855:CDS
GATGCAAACTCATTTAAACC+TGG 0.563444 7.3:-4884370 MS.gene050855:CDS
TCTTGATGGCACTTACATCA+AGG 0.564289 7.3:-4885431 MS.gene050855:CDS
AATTATAGGAACGGAAAGCG+TGG 0.572400 7.3:-4883757 MS.gene050855:CDS
GACATGTTGCAAGTTATTGG+TGG 0.572683 7.3:-4885703 MS.gene050855:CDS
TTACTCCTTATAGAGGTCAA+AGG 0.573713 7.3:-4885090 MS.gene050855:CDS
TAGTAGAATCACGTTGTGGT+TGG 0.574703 7.3:+4883779 None:intergenic
TATTCGCAAAGAAATGACAT+TGG 0.576923 7.3:-4884864 MS.gene050855:CDS
CACCGTAGTTATCATGTCAC+CGG 0.578583 7.3:+4884790 None:intergenic
CGGAGCAGTAGTGTTAGTTG+TGG 0.579402 7.3:+4883819 None:intergenic
ACACATGTGTGTGGAGGAGT+TGG 0.585582 7.3:-4885665 MS.gene050855:CDS
TTTGGAAAAGATAAAGCAGA+TGG 0.586596 7.3:-4883976 MS.gene050855:CDS
TATACAAGCCAACTGCGGTA+GGG 0.587340 7.3:+4884037 None:intergenic
TGGTTTGTTGGATTTGAACC+CGG 0.587761 7.3:+4883799 None:intergenic
TTGTTGAAATTAGTGGACGA+GGG 0.590054 7.3:-4884403 MS.gene050855:CDS
TTACATCAAGGTCAATGTGC+CGG 0.590931 7.3:-4885419 MS.gene050855:CDS
TAAGAATCACAAAGCGACAA+TGG 0.591726 7.3:-4884459 MS.gene050855:CDS
GCAGCTGATCCCTCCCAACC+AGG 0.594468 7.3:+4885301 None:intergenic
ATGCAAACTCATTTAAACCT+GGG 0.599381 7.3:-4884369 MS.gene050855:CDS
ATGTTGGGTCCAGGTGCAAG+TGG 0.603177 7.3:-4884226 MS.gene050855:CDS
GATTCTACTAATTATAGGAA+CGG 0.604046 7.3:-4883766 MS.gene050855:CDS
CAATGGATACTCCTGGCTTG+AGG 0.604084 7.3:-4883474 MS.gene050855:CDS
GAGTTGTTGAATAGATGGAC+GGG 0.607031 7.3:-4884501 MS.gene050855:intron
GATGAAGAAGTGGTAATGGC+TGG 0.607200 7.3:-4883541 MS.gene050855:CDS
AATGGTTTAAAGGTTCCTCA+AGG 0.609493 7.3:-4885241 MS.gene050855:intron
TATGACTATTGAGATGGAGA+AGG 0.615365 7.3:-4883929 MS.gene050855:CDS
CAGTCTCACCCTACCGCAGT+TGG 0.617770 7.3:-4884045 MS.gene050855:CDS
AAAGGTATCACCTTAGTGAG+TGG 0.618563 7.3:-4885072 MS.gene050855:CDS
GGTAGATATAGAACAAGGAA+GGG 0.618775 7.3:-4885385 MS.gene050855:CDS
AAATGTTCAATCAACACAAG+AGG 0.626386 7.3:-4883905 MS.gene050855:CDS
AGAAACACACAGCTGATAGG+AGG 0.626406 7.3:-4883606 MS.gene050855:CDS
GCTGGATACATGAATGGAGA+AGG 0.632475 7.3:-4885118 MS.gene050855:CDS
GATTTATCGTCAATGGTGCA+AGG 0.635917 7.3:-4884158 MS.gene050855:intron
TGAGTTGTTGAATAGATGGA+CGG 0.636038 7.3:-4884502 MS.gene050855:intron
TCCTACTCGACACATGTGTG+TGG 0.639193 7.3:-4885674 MS.gene050855:CDS
GTCCGGTGACATGATAACTA+CGG 0.641608 7.3:-4884792 MS.gene050855:intron
GGTATCACCTTAGTGAGTGG+AGG 0.642466 7.3:-4885069 MS.gene050855:CDS
AGGATTGTCTGATGAAGAAG+TGG 0.642904 7.3:-4883551 MS.gene050855:CDS
TTATAGGAACGGAAAGCGTG+GGG 0.650988 7.3:-4883755 MS.gene050855:CDS
TACTCGACACATGTGTGTGG+AGG 0.653616 7.3:-4885671 MS.gene050855:CDS
AATGTTCAATCAACACAAGA+GGG 0.654380 7.3:-4883904 MS.gene050855:CDS
TTGCGTTGAAAATACAAGGA+TGG 0.654392 7.3:-4885752 MS.gene050855:CDS
AGGGCAACACAGACGAACGA+TGG 0.667738 7.3:-4885480 MS.gene050855:CDS
GTATCCAAGCTATCATAGTG+TGG 0.667913 7.3:+4884003 None:intergenic
TAATTAGTAGAATCACGTTG+TGG 0.667964 7.3:+4883775 None:intergenic
TCCACACACATGTGTCGAGT+AGG 0.675300 7.3:+4885673 None:intergenic
AATGTGCCGGAAGCTGACAA+AGG 0.679136 7.3:-4885406 MS.gene050855:CDS
ACAAAGGTAGATATAGAACA+AGG 0.691343 7.3:-4885390 MS.gene050855:CDS
GTTCAATCAACACAAGAGGG+CGG 0.700627 7.3:-4883901 MS.gene050855:CDS
TATAGGAACGGAAAGCGTGG+GGG 0.729484 7.3:-4883754 MS.gene050855:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATTAGATATATTTAAT+AGG - chr7.3:4884465-4884484 MS.gene050855:CDS 10.0%
!! TTCATATTGAAAAATTCTTT+AGG + chr7.3:4884173-4884192 None:intergenic 15.0%
!!! AAATACTTTAAAAATTGTGT+AGG - chr7.3:4883738-4883757 MS.gene050855:CDS 15.0%
!!! ACTTCAATTTTATTTATGAT+AGG - chr7.3:4884035-4884054 MS.gene050855:CDS 15.0%
!!! CTTCAATTTTATTTATGATA+GGG - chr7.3:4884036-4884055 MS.gene050855:CDS 15.0%
!!! TCTATTTTAAAAGAAATTGA+AGG - chr7.3:4885624-4885643 MS.gene050855:CDS 15.0%
!! ACATATATGAATTGTAAATC+TGG + chr7.3:4883870-4883889 None:intergenic 20.0%
!! CATTAGATATATTTAATAGG+TGG - chr7.3:4884468-4884487 MS.gene050855:CDS 20.0%
!! TATCATGAATTTATCAATTG+TGG + chr7.3:4885082-4885101 None:intergenic 20.0%
!! TATTATTATTTATGTGATGC+TGG - chr7.3:4884059-4884078 MS.gene050855:intron 20.0%
!! TCAAATTCATTGAACAAATT+GGG - chr7.3:4885504-4885523 MS.gene050855:CDS 20.0%
!!! AATGTAATAGAAAGATGTTT+TGG - chr7.3:4884209-4884228 MS.gene050855:CDS 20.0%
!!! CTTTTAAAATAGAGACAATT+TGG + chr7.3:4885617-4885636 None:intergenic 20.0%
! AACGTGATTCTACTAATTAT+AGG - chr7.3:4885424-4885443 MS.gene050855:CDS 25.0%
! GATTCTACTAATTATAGGAA+CGG - chr7.3:4885429-4885448 MS.gene050855:CDS 25.0%
! GCATTTCAGTAATGTATTAT+TGG - chr7.3:4883641-4883660 MS.gene050855:CDS 25.0%
! GTCAAATTCATTGAACAAAT+TGG - chr7.3:4885503-4885522 MS.gene050855:CDS 25.0%
! TCTCCTAAATTTATTTCCAA+AGG + chr7.3:4884359-4884378 None:intergenic 25.0%
! TGCCAATATATGTAAAAACA+TGG + chr7.3:4883559-4883578 None:intergenic 25.0%
!! AAAAATTCTTTAGGAGTAGA+TGG + chr7.3:4884164-4884183 None:intergenic 25.0%
!! AAAACAACCTAAACCAATTT+TGG - chr7.3:4883692-4883711 MS.gene050855:CDS 25.0%
!! AGCATATTTTGCATAGTTTA+TGG - chr7.3:4884006-4884025 MS.gene050855:CDS 25.0%
!! ATTTATACTTTTGTACCTTG+AGG + chr7.3:4883972-4883991 None:intergenic 25.0%
!! GATCCTTTGGAAATAAATTT+AGG - chr7.3:4884353-4884372 MS.gene050855:CDS 25.0%
!! TGATTAGAAGACAATTTGTT+AGG - chr7.3:4883598-4883617 MS.gene050855:CDS 25.0%
!! TTTTATCCTGTAAAAACTCA+AGG - chr7.3:4884272-4884291 MS.gene050855:CDS 25.0%
AAAGATGATTGTAGTAGAGA+AGG - chr7.3:4885013-4885032 MS.gene050855:CDS 30.0%
AAATGTTCAATCAACACAAG+AGG - chr7.3:4885290-4885309 MS.gene050855:CDS 30.0%
AATGTTCAATCAACACAAGA+GGG - chr7.3:4885291-4885310 MS.gene050855:CDS 30.0%
ACAAAGGTAGATATAGAACA+AGG - chr7.3:4883805-4883824 MS.gene050855:CDS 30.0%
ATATGAAACATTCTTCAGCT+AGG - chr7.3:4884186-4884205 MS.gene050855:CDS 30.0%
ATGCAAACTCATTTAAACCT+GGG - chr7.3:4884826-4884845 MS.gene050855:CDS 30.0%
CATTGATATGACTATTGAGA+TGG - chr7.3:4885260-4885279 MS.gene050855:CDS 30.0%
GATATATTTAATAGGTGGAG+AGG - chr7.3:4884473-4884492 MS.gene050855:CDS 30.0%
TAATTAGTAGAATCACGTTG+TGG + chr7.3:4885423-4885442 None:intergenic 30.0%
TATATTCACAACAAATTCCC+AGG - chr7.3:4884870-4884889 MS.gene050855:CDS 30.0%
TATTCGCAAAGAAATGACAT+TGG - chr7.3:4884331-4884350 MS.gene050855:CDS 30.0%
TCACTCTTGATTCAATATGT+GGG + chr7.3:4884914-4884933 None:intergenic 30.0%
TCTGCAATCAAAGATATGTT+GGG - chr7.3:4884954-4884973 MS.gene050855:CDS 30.0%
TTCACTCTTGATTCAATATG+TGG + chr7.3:4884915-4884934 None:intergenic 30.0%
TTCTGCAATCAAAGATATGT+TGG - chr7.3:4884953-4884972 MS.gene050855:CDS 30.0%
TTGTGAAAAAATAGTCGCAA+AGG + chr7.3:4885704-4885723 None:intergenic 30.0%
TTTGGAAAAGATAAAGCAGA+TGG - chr7.3:4885219-4885238 MS.gene050855:intron 30.0%
! ATTCTTCCTTGAGTTTTTAC+AGG + chr7.3:4884281-4884300 None:intergenic 30.0%
! CAATTCATATATGTTTTGCC+TGG - chr7.3:4883876-4883895 MS.gene050855:CDS 30.0%
! TTGTTGAGTTGTTGAATAGA+TGG - chr7.3:4884689-4884708 MS.gene050855:intron 30.0%
!! AGATGTTTTGGACTTTTGAA+AGG - chr7.3:4884221-4884240 MS.gene050855:CDS 30.0%
!! CGCCATGTTTTTACATATAT+TGG - chr7.3:4883554-4883573 MS.gene050855:CDS 30.0%
!! TTTTGAGTAACAATGGTACT+AGG - chr7.3:4885763-4885782 MS.gene050855:CDS 30.0%
!!! GACATTGTTTTGAGTAACAA+TGG - chr7.3:4885756-4885775 MS.gene050855:CDS 30.0%
!!! TTGCGACTATTTTTTCACAA+TGG - chr7.3:4885704-4885723 MS.gene050855:CDS 30.0%
!!! TTTTTTATACAAGCCAACTG+CGG + chr7.3:4885166-4885185 None:intergenic 30.0%
AAGCTATCATAGTGTGGAAA+TGG + chr7.3:4885189-4885208 None:intergenic 35.0%
AATGGTTTAAAGGTTCCTCA+AGG - chr7.3:4883954-4883973 MS.gene050855:CDS 35.0%
AGAAATGACATTGGATCCTT+TGG - chr7.3:4884340-4884359 MS.gene050855:CDS 35.0%
AGAAGGAGATTTATCGTCAA+TGG - chr7.3:4885030-4885049 MS.gene050855:CDS 35.0%
AGGTAGATATAGAACAAGGA+AGG - chr7.3:4883809-4883828 MS.gene050855:CDS 35.0%
ATATTTAATAGGTGGAGAGG+TGG - chr7.3:4884476-4884495 MS.gene050855:CDS 35.0%
ATTTCCACACTATGATAGCT+TGG - chr7.3:4885188-4885207 MS.gene050855:intron 35.0%
CACTCTTGATTCAATATGTG+GGG + chr7.3:4884913-4884932 None:intergenic 35.0%
GAGATAGCTACAAATGTGTT+AGG - chr7.3:4883834-4883853 MS.gene050855:CDS 35.0%
GATAGCTTGGATACTGTATT+TGG - chr7.3:4885201-4885220 MS.gene050855:intron 35.0%
GATGCAAACTCATTTAAACC+TGG - chr7.3:4884825-4884844 MS.gene050855:CDS 35.0%
GGATTTCTTACTCCTTATAG+AGG - chr7.3:4884098-4884117 MS.gene050855:intron 35.0%
GGTAGATATAGAACAAGGAA+GGG - chr7.3:4883810-4883829 MS.gene050855:CDS 35.0%
TAAGAATCACAAAGCGACAA+TGG - chr7.3:4884736-4884755 MS.gene050855:intron 35.0%
TATGACTATTGAGATGGAGA+AGG - chr7.3:4885266-4885285 MS.gene050855:CDS 35.0%
TGAGGAACCTTTAAACCATT+TGG + chr7.3:4883954-4883973 None:intergenic 35.0%
TGAGTTGTTGAATAGATGGA+CGG - chr7.3:4884693-4884712 MS.gene050855:intron 35.0%
TGATACCTTTGACCTCTATA+AGG + chr7.3:4884113-4884132 None:intergenic 35.0%
TGTGACATGTTGCAAGTTAT+TGG - chr7.3:4883489-4883508 MS.gene050855:CDS 35.0%
TTACTCCTTATAGAGGTCAA+AGG - chr7.3:4884105-4884124 MS.gene050855:intron 35.0%
TTCTCGACCAAATGGTTTAA+AGG - chr7.3:4883944-4883963 MS.gene050855:CDS 35.0%
TTGCGTTGAAAATACAAGGA+TGG - chr7.3:4883443-4883462 MS.gene050855:CDS 35.0%
TTGGGTGAGATTTATGCTAA+TGG - chr7.3:4885522-4885541 MS.gene050855:CDS 35.0%
! ACAACCTAAACCAATTTTGG+AGG - chr7.3:4883695-4883714 MS.gene050855:CDS 35.0%
! CAACCTAAACCAATTTTGGA+GGG - chr7.3:4883696-4883715 MS.gene050855:CDS 35.0%
! CATATATGTTTTGCCTGGTT+GGG - chr7.3:4883881-4883900 MS.gene050855:CDS 35.0%
! TCATATATGTTTTGCCTGGT+TGG - chr7.3:4883880-4883899 MS.gene050855:CDS 35.0%
! TTGTTGAAATTAGTGGACGA+GGG - chr7.3:4884792-4884811 MS.gene050855:intron 35.0%
! TTTGTTGAAATTAGTGGACG+AGG - chr7.3:4884791-4884810 MS.gene050855:intron 35.0%
! TTTTTCACAATGGATACTCC+TGG - chr7.3:4885714-4885733 MS.gene050855:CDS 35.0%
!! AGAAGACAATTTGTTAGGTC+TGG - chr7.3:4883603-4883622 MS.gene050855:CDS 35.0%
!! GGAAGGTTTGTTGAAATTAG+TGG - chr7.3:4884785-4884804 MS.gene050855:intron 35.0%
AATTATAGGAACGGAAAGCG+TGG - chr7.3:4885438-4885457 MS.gene050855:CDS 40.0%
AATTGTGTAGGAGCTCTTGA+TGG - chr7.3:4883750-4883769 MS.gene050855:CDS 40.0%
ACCAATACTCCATCTTCTTC+AGG + chr7.3:4884765-4884784 None:intergenic 40.0%
AGGATTGTCTGATGAAGAAG+TGG - chr7.3:4885644-4885663 MS.gene050855:CDS 40.0%
ATCAAAGATATGTTGGGTCC+AGG - chr7.3:4884960-4884979 MS.gene050855:CDS 40.0%
GACATGTTGCAAGTTATTGG+TGG - chr7.3:4883492-4883511 MS.gene050855:CDS 40.0%
GAGTTGTTGAATAGATGGAC+GGG - chr7.3:4884694-4884713 MS.gene050855:intron 40.0%
GATAAAGCAGATGGTACTGT+AGG - chr7.3:4885228-4885247 MS.gene050855:intron 40.0%
GATTTATCGTCAATGGTGCA+AGG - chr7.3:4885037-4885056 MS.gene050855:CDS 40.0%
GCAACATGTCACATAGTTTG+TGG + chr7.3:4883482-4883501 None:intergenic 40.0%
GTATCCAAGCTATCATAGTG+TGG + chr7.3:4885195-4885214 None:intergenic 40.0%
GTCGAGAAATAGCATCTCTA+AGG + chr7.3:4883932-4883951 None:intergenic 40.0%
GTCGCAAAGGTTATTGTCTT+TGG + chr7.3:4885691-4885710 None:intergenic 40.0%
GTCTGATGAAGAAGTGGTAA+TGG - chr7.3:4885650-4885669 MS.gene050855:CDS 40.0%
TAGTAGAATCACGTTGTGGT+TGG + chr7.3:4885419-4885438 None:intergenic 40.0%
TATCTACCTTTGTCAGCTTC+CGG + chr7.3:4883798-4883817 None:intergenic 40.0%
TCCTGAAGAAGATGGAGTAT+TGG - chr7.3:4884761-4884780 MS.gene050855:intron 40.0%
TGTGATGCTGGATACATGAA+TGG - chr7.3:4884071-4884090 MS.gene050855:intron 40.0%
TTACATCAAGGTCAATGTGC+CGG - chr7.3:4883776-4883795 MS.gene050855:CDS 40.0%
TTCTCTGATGAAGTCATGTC+CGG - chr7.3:4884386-4884405 MS.gene050855:CDS 40.0%
! ATTATAGGAACGGAAAGCGT+GGG - chr7.3:4885439-4885458 MS.gene050855:CDS 40.0%
! TAGCTTTTAGTGTGCAACCT+GGG + chr7.3:4884890-4884909 None:intergenic 40.0%
! TCTTGATGGCACTTACATCA+AGG - chr7.3:4883764-4883783 MS.gene050855:CDS 40.0%
! TGGCTTGCGTTGAAAATACA+AGG - chr7.3:4883439-4883458 MS.gene050855:CDS 40.0%
! TTGCCCTCCAAAATTGGTTT+AGG + chr7.3:4883702-4883721 None:intergenic 40.0%
!! AAAGGTATCACCTTAGTGAG+TGG - chr7.3:4884123-4884142 MS.gene050855:intron 40.0%
!! GATGCTATTTCTCGACCAAA+TGG - chr7.3:4883936-4883955 MS.gene050855:CDS 40.0%
!! TGAAGAAGATGGAGTATTGG+TGG - chr7.3:4884764-4884783 MS.gene050855:intron 40.0%
!! TGGACTTTTGAAAGGACGTT+GGG - chr7.3:4884229-4884248 MS.gene050855:CDS 40.0%
!! TGGTTTGTTGGATTTGAACC+CGG + chr7.3:4885399-4885418 None:intergenic 40.0%
!! TTGGACTTTTGAAAGGACGT+TGG - chr7.3:4884228-4884247 MS.gene050855:CDS 40.0%
ACAACTAACACTACTGCTCC+GGG - chr7.3:4885378-4885397 MS.gene050855:CDS 45.0%
ACCTGGGTACACTAAAGCTT+TGG - chr7.3:4884842-4884861 MS.gene050855:CDS 45.0%
ACGAGAAACACACAGCTGAT+AGG - chr7.3:4885586-4885605 MS.gene050855:CDS 45.0%
AGAAACACACAGCTGATAGG+AGG - chr7.3:4885589-4885608 MS.gene050855:CDS 45.0%
ATCCATTCCTCCACTCACTA+AGG + chr7.3:4884136-4884155 None:intergenic 45.0%
CAAGTACGACATGGAGTCAA+TGG - chr7.3:4884432-4884451 MS.gene050855:CDS 45.0%
CACAACTAACACTACTGCTC+CGG - chr7.3:4885377-4885396 MS.gene050855:CDS 45.0%
CACCGTAGTTATCATGTCAC+CGG + chr7.3:4884408-4884427 None:intergenic 45.0%
GCTGGATACATGAATGGAGA+AGG - chr7.3:4884077-4884096 MS.gene050855:intron 45.0%
GGAGCAGTAGTGTTAGTTGT+GGG + chr7.3:4885378-4885397 None:intergenic 45.0%
GGTCTGGTGAAACGATTAGT+AGG - chr7.3:4883619-4883638 MS.gene050855:CDS 45.0%
GTCCGGTGACATGATAACTA+CGG - chr7.3:4884403-4884422 MS.gene050855:CDS 45.0%
GTGTTAGTTGTGGGTGTTTC+TGG + chr7.3:4885369-4885388 None:intergenic 45.0%
GTTCAATCAACACAAGAGGG+CGG - chr7.3:4885294-4885313 MS.gene050855:CDS 45.0%
TATACAAGCCAACTGCGGTA+GGG + chr7.3:4885161-4885180 None:intergenic 45.0%
TCTGTGTTGCCCTCCAAAAT+TGG + chr7.3:4883708-4883727 None:intergenic 45.0%
TTATACAAGCCAACTGCGGT+AGG + chr7.3:4885162-4885181 None:intergenic 45.0%
! ATATGTTTTGCCTGGTTGGG+AGG - chr7.3:4883884-4883903 MS.gene050855:CDS 45.0%
! CAATGGACTCCTGAAGAAGA+TGG - chr7.3:4884753-4884772 MS.gene050855:intron 45.0%
! GTAGCTTTTAGTGTGCAACC+TGG + chr7.3:4884891-4884910 None:intergenic 45.0%
! TATGTTTTGCCTGGTTGGGA+GGG - chr7.3:4883885-4883904 MS.gene050855:CDS 45.0%
! TCCAAAGCTTTAGTGTACCC+AGG + chr7.3:4884846-4884865 None:intergenic 45.0%
! TGAAATTAGTGGACGAGGGT+TGG - chr7.3:4884796-4884815 MS.gene050855:CDS 45.0%
! TTATAGGAACGGAAAGCGTG+GGG - chr7.3:4885440-4885459 MS.gene050855:CDS 45.0%
!! CATTGACTCCATGTCGTACT+TGG + chr7.3:4884434-4884453 None:intergenic 45.0%
!! GAAGATGGAGTATTGGTGGA+AGG - chr7.3:4884768-4884787 MS.gene050855:intron 45.0%
!! GATGAAGAAGTGGTAATGGC+TGG - chr7.3:4885654-4885673 MS.gene050855:CDS 45.0%
!! TCACGTTGTGGTTGGTTTGT+TGG + chr7.3:4885411-4885430 None:intergenic 45.0%
AATGTGCCGGAAGCTGACAA+AGG - chr7.3:4883789-4883808 MS.gene050855:CDS 50.0%
ACACATGTGTGTGGAGGAGT+TGG - chr7.3:4883530-4883549 MS.gene050855:CDS 50.0%
CACCTTAGTGAGTGGAGGAA+TGG - chr7.3:4884131-4884150 MS.gene050855:intron 50.0%
CGGAGCAGTAGTGTTAGTTG+TGG + chr7.3:4885379-4885398 None:intergenic 50.0%
CGGTGACATGATAACTACGG+TGG - chr7.3:4884406-4884425 MS.gene050855:CDS 50.0%
GGTATCACCTTAGTGAGTGG+AGG - chr7.3:4884126-4884145 MS.gene050855:intron 50.0%
GTAGGGTGAGACTGCGTTAA+AGG + chr7.3:4885144-4885163 None:intergenic 50.0%
TACTCGACACATGTGTGTGG+AGG - chr7.3:4883524-4883543 MS.gene050855:CDS 50.0%
TCCACACACATGTGTCGAGT+AGG + chr7.3:4883525-4883544 None:intergenic 50.0%
TCCTACTCGACACATGTGTG+TGG - chr7.3:4883521-4883540 MS.gene050855:CDS 50.0%
! ATACTCCTGGCTTGAGGAAG+CGG - chr7.3:4885727-4885746 MS.gene050855:CDS 50.0%
! ATTAGTGGACGAGGGTTGGA+AGG - chr7.3:4884800-4884819 MS.gene050855:CDS 50.0%
! CAATGGATACTCCTGGCTTG+AGG - chr7.3:4885721-4885740 MS.gene050855:CDS 50.0%
! GTCCAGGTGCAAGTGGTTTT+GGG - chr7.3:4884976-4884995 MS.gene050855:CDS 50.0%
! TATAGGAACGGAAAGCGTGG+GGG - chr7.3:4885441-4885460 MS.gene050855:CDS 50.0%
ACAAACCGCTTCCTCAAGCC+AGG + chr7.3:4885735-4885754 None:intergenic 55.0%
AGGGCAACACAGACGAACGA+TGG - chr7.3:4883715-4883734 MS.gene050855:CDS 55.0%
ATGTTGGGTCCAGGTGCAAG+TGG - chr7.3:4884969-4884988 MS.gene050855:CDS 55.0%
CACCCAAAACCACTTGCACC+TGG + chr7.3:4884981-4885000 None:intergenic 55.0%
TCAACACAAGAGGGCGGATC+AGG - chr7.3:4885300-4885319 MS.gene050855:CDS 55.0%
TGGCTTGAGGAAGCGGTTTG+TGG - chr7.3:4885734-4885753 MS.gene050855:CDS 55.0%
! ACGGAAAGCGTGGGGGAAAA+AGG - chr7.3:4885448-4885467 MS.gene050855:CDS 55.0%
! CGGAAAGCGTGGGGGAAAAA+GGG - chr7.3:4885449-4885468 MS.gene050855:CDS 55.0%
! GGTCCAGGTGCAAGTGGTTT+TGG - chr7.3:4884975-4884994 MS.gene050855:CDS 55.0%
!!! CAGGTGCAAGTGGTTTTGGG+TGG - chr7.3:4884979-4884998 MS.gene050855:CDS 55.0%
CAGTCTCACCCTACCGCAGT+TGG - chr7.3:4885150-4885169 MS.gene050855:intron 60.0%
CGGTGGAGCCAAGTACGACA+TGG - chr7.3:4884423-4884442 MS.gene050855:CDS 60.0%
GCAGCTGATCCCTCCCAACC+AGG + chr7.3:4883897-4883916 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 4883429 4885788 4883429 ID=MS.gene050855
chr7.3 mRNA 4883429 4885788 4883429 ID=MS.gene050855.t1;Parent=MS.gene050855
chr7.3 exon 4885242 4885788 4885242 ID=MS.gene050855.t1.exon1;Parent=MS.gene050855.t1
chr7.3 CDS 4885242 4885788 4885242 ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1
chr7.3 exon 4884793 4885160 4884793 ID=MS.gene050855.t1.exon2;Parent=MS.gene050855.t1
chr7.3 CDS 4884793 4885160 4884793 ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1
chr7.3 exon 4884159 4884509 4884159 ID=MS.gene050855.t1.exon3;Parent=MS.gene050855.t1
chr7.3 CDS 4884159 4884509 4884159 ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1
chr7.3 exon 4883429 4884064 4883429 ID=MS.gene050855.t1.exon4;Parent=MS.gene050855.t1
chr7.3 CDS 4883429 4884064 4883429 ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1
Gene Sequence

>MS.gene050855

ATGAGTGATTTGGCTTGCGTTGAAAATACAAGGATGGATAGAGCTGCTTTCCACAAACTATGTGACATGTTGCAAGTTATTGGTGGTTTGCTTCCTACTCGACACATGTGTGTGGAGGAGTTGGTCGCCATGTTTTTACATATATTGGCACATCATGTTAAGAATAGAATGATTAGAAGACAATTTGTTAGGTCTGGTGAAACGATTAGTAGGCATTTCAGTAATGTATTATTGGCAGTTTTGAAGTGTCATAAAGAATTGTTAAAACAACCTAAACCAATTTTGGAGGGCAACACAGACGAACGATGGAAATACTTTAAAAATTGTGTAGGAGCTCTTGATGGCACTTACATCAAGGTCAATGTGCCGGAAGCTGACAAAGGTAGATATAGAACAAGGAAGGGTGAGATAGCTACAAATGTGTTAGGTGTATGCTCACCAGATTTACAATTCATATATGTTTTGCCTGGTTGGGAGGGATCAGCTGCTGACTCTAGAGTCCTTAGAGATGCTATTTCTCGACCAAATGGTTTAAAGGTTCCTCAAGGTACAAAAGTATAAATTAATATAAAAATAAAGCATATTTTGCATAGTTTATGGATTTTAACTTCAATTTTATTTATGATAGGGTATTATTATTTATGTGATGCTGGATACATGAATGGAGAAGGATTTCTTACTCCTTATAGAGGTCAAAGGTATCACCTTAGTGAGTGGAGGAATGGATTACAACCATCTACTCCTAAAGAATTTTTCAATATGAAACATTCTTCAGCTAGGAATGTAATAGAAAGATGTTTTGGACTTTTGAAAGGACGTTGGGCTATATTGAGAGAGAAGTCATTTTATCCTGTAAAAACTCAAGGAAGAATAATAGCAGCTTGTTGTCTTCTACATAATCATATTCGCAAAGAAATGACATTGGATCCTTTGGAAATAAATTTAGGAGATGATGAATTCTCTGATGAAGTCATGTCCGGTGACATGATAACTACGGTGGAGCCAAGTACGACATGGAGTCAATGGAGAGATAGTTTTTCATTAGATATATTTAATAGGTGGAGAGGTGGAAATCATTGAAAATTTTCTTGTTTTTTATTTGACATTTCAATTTGATTGTATTTTTTATTTTCAGTGTACTGTTGACTTTGATTTAAAAGTTTTATTAATCTAATCTGTTTCTTTTATGAGTTTTTATTTGTAAAATATGTACTTGTAATATGATTTTATTTATTGTTATATATTTTGACATGCACACACTTGTTGAGTTGTTGAATAGATGGACGGGTCGTCTGAAAATCAAAATGTAAGAATCACAAAGCGACAATGGACTCCTGAAGAAGATGGAGTATTGGTGGAAGGTTTGTTGAAATTAGTGGACGAGGGTTGGAAGGCTGATGCAAACTCATTTAAACCTGGGTACACTAAAGCTTTGGAGAAATATATTCACAACAAATTCCCAGGTTGCACACTAAAAGCTACCCCACATATTGAATCAAGAGTGAAACTGCTTAAAAGACAATATTCTGCAATCAAAGATATGTTGGGTCCAGGTGCAAGTGGTTTTGGGTGGAATGATGCTGAAAAGATGATTGTAGTAGAGAAGGAGATTTATCGTCAATGGTGCAAGGTAATATAAGATATACTATTCCACAATTGATAAATTCATGATAATTGTTCTTGCATTAAATTTATATTTCTAAACACTTTTTCCTTTAACGCAGTCTCACCCTACCGCAGTTGGCTTGTATAAAAAACCATTTCCACACTATGATAGCTTGGATACTGTATTTGGAAAAGATAAAGCAGATGGTACTGTAGGAGAAGATATCATTGATATGACTATTGAGATGGAGAAGGAAAATGTTCAATCAACACAAGAGGGCGGATCAGGAATTAATTTGAATGATGATGATGAGAATTTTGAGTCGCAGATGCCAGAAACACCCACAACTAACACTACTGCTCCGGGTTCAAATCCAACAAACCAACCACAACGTGATTCTACTAATTATAGGAACGGAAAGCGTGGGGGAAAAAGGGTGAAGTATAACGATGATGCTTCTGATAGCATGTCAAATTCATTGAACAAATTGGGTGAGATTTATGCTAATGGTGTTGACAATATGAAACAAGTCTTCACTTCTTGTTTTGTGCACGAGAAACACACAGCTGATAGGAGGAACCAAATTGTCTCTATTTTAAAAGAAATTGAAGGATTGTCTGATGAAGAAGTGGTAATGGCTGGTATGCTTATCACCAAAGACAATAACCTTTGCGACTATTTTTTCACAATGGATACTCCTGGCTTGAGGAAGCGGTTTGTGGACATTGTTTTGAGTAACAATGGTACTAGGTAG

Protein sequence

>MS.gene050855.t1

MSDLACVENTRMDRAAFHKLCDMLQVIGGLLPTRHMCVEELVAMFLHILAHHVKNRMIRRQFVRSGETISRHFSNVLLAVLKCHKELLKQPKPILEGNTDERWKYFKNCVGALDGTYIKVNVPEADKGRYRTRKGEIATNVLGVCSPDLQFIYVLPGWEGSAADSRVLRDAISRPNGLKVPQGYYYLCDAGYMNGEGFLTPYRGQRYHLSEWRNGLQPSTPKEFFNMKHSSARNVIERCFGLLKGRWAILREKSFYPVKTQGRIIAACCLLHNHIRKEMTLDPLEINLGDDEFSDEVMSGDMITTMDGSSENQNVRITKRQWTPEEDGVLVEGLLKLVDEGWKADANSFKPGYTKALEKYIHNKFPGCTLKATPHIESRVKLLKRQYSAIKDMLGPGASGFGWNDAEKMIVVEKEIYRQWCKSHPTAVGLYKKPFPHYDSLDTVFGKDKADGTVGEDIIDMTIEMEKENVQSTQEGGSGINLNDDDENFESQMPETPTTNTTAPGSNPTNQPQRDSTNYRNGKRGGKRVKYNDDASDSMSNSLNKLGEIYANGVDNMKQVFTSCFVHEKHTADRRNQIVSILKEIEGLSDEEVVMAGMLITKDNNLCDYFFTMDTPGLRKRFVDIVLSNNGTR