Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050855.t1 | GAU43673.1 | 75.2 | 533 | 84 | 6 | 112 | 631 | 42 | 539 | 1.10E-226 | 796.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050855.t1 | Q9M2U3 | 32.0 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 1.5e-17 | 92.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050855.t1 | A0A2Z6NNS9 | 75.2 | 533 | 84 | 6 | 112 | 631 | 42 | 539 | 8.0e-227 | 796.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050855 | MS.gene09379 | 0.902469 | 9.40E-79 | -1.69E-46 |
MS.gene050855 | MS.gene42196 | 0.899955 | 1.19E-77 | -1.69E-46 |
MS.gene050855 | MS.gene61804 | 0.876852 | 1.00E-68 | -1.69E-46 |
MS.gene050855 | MS.gene69061 | 0.891803 | 2.84E-74 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050855.t1 | MTR_0697s0010 | 86.834 | 319 | 27 | 2 | 306 | 623 | 1 | 305 | 0.0 | 565 |
MS.gene050855.t1 | MTR_3g075160 | 66.667 | 327 | 107 | 2 | 306 | 632 | 1 | 325 | 3.40e-150 | 437 |
MS.gene050855.t1 | MTR_3g453160 | 62.381 | 210 | 77 | 2 | 423 | 632 | 2 | 209 | 4.63e-79 | 249 |
MS.gene050855.t1 | MTR_4g117940 | 87.736 | 106 | 13 | 0 | 2 | 107 | 71 | 176 | 3.01e-65 | 212 |
MS.gene050855.t1 | MTR_4g055725 | 47.596 | 208 | 89 | 2 | 6 | 213 | 78 | 265 | 2.23e-55 | 189 |
MS.gene050855.t1 | MTR_1g052620 | 83.529 | 85 | 14 | 0 | 539 | 623 | 1 | 85 | 2.93e-41 | 149 |
MS.gene050855.t1 | MTR_4g117120 | 52.985 | 134 | 63 | 0 | 2 | 135 | 149 | 282 | 1.92e-38 | 146 |
MS.gene050855.t1 | MTR_4g117120 | 46.739 | 92 | 38 | 2 | 238 | 328 | 285 | 366 | 5.71e-15 | 77.4 |
MS.gene050855.t1 | MTR_7g094990 | 47.857 | 140 | 66 | 3 | 3 | 137 | 70 | 207 | 3.78e-25 | 108 |
MS.gene050855.t1 | MTR_7g094990 | 43.478 | 115 | 51 | 4 | 339 | 452 | 167 | 268 | 1.61e-18 | 89.0 |
MS.gene050855.t1 | MTR_8g463880 | 47.619 | 84 | 44 | 0 | 6 | 89 | 64 | 147 | 6.51e-17 | 78.6 |
MS.gene050855.t1 | MTR_7g056633 | 45.882 | 85 | 46 | 0 | 6 | 90 | 32 | 116 | 2.67e-15 | 73.6 |
MS.gene050855.t1 | MTR_5g063300 | 45.679 | 81 | 44 | 0 | 11 | 91 | 55 | 135 | 1.49e-13 | 68.9 |
MS.gene050855.t1 | MTR_8g062180 | 26.360 | 239 | 154 | 8 | 322 | 550 | 68 | 294 | 7.53e-12 | 67.8 |
MS.gene050855.t1 | MTR_1g055365 | 28.431 | 204 | 131 | 7 | 295 | 498 | 2 | 190 | 8.47e-12 | 68.6 |
MS.gene050855.t1 | MTR_3g045460 | 31.892 | 185 | 108 | 8 | 322 | 498 | 518 | 692 | 1.22e-11 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050855.t1 | AT5G41980 | 39.706 | 340 | 177 | 8 | 6 | 340 | 42 | 358 | 1.23e-65 | 220 |
MS.gene050855.t1 | AT1G43722 | 36.822 | 258 | 144 | 6 | 5 | 246 | 65 | 319 | 7.90e-42 | 154 |
MS.gene050855.t1 | AT5G35695 | 39.037 | 187 | 96 | 3 | 129 | 314 | 3 | 172 | 1.73e-34 | 130 |
MS.gene050855.t1 | AT3G30525 | 35.443 | 158 | 96 | 2 | 113 | 264 | 1 | 158 | 2.17e-24 | 100 |
MS.gene050855.t1 | AT5G28950 | 47.826 | 92 | 45 | 2 | 91 | 181 | 9 | 98 | 3.09e-20 | 88.2 |
MS.gene050855.t1 | AT3G55350 | 31.959 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 4.49e-18 | 87.4 |
MS.gene050855.t1 | AT5G12010 | 24.149 | 323 | 198 | 9 | 11 | 308 | 180 | 480 | 8.05e-16 | 81.3 |
MS.gene050855.t1 | AT1G30140 | 26.291 | 213 | 141 | 5 | 321 | 527 | 16 | 218 | 2.33e-12 | 67.4 |
MS.gene050855.t1 | AT1G30140 | 26.291 | 213 | 141 | 5 | 321 | 527 | 16 | 218 | 2.33e-12 | 67.4 |
MS.gene050855.t1 | AT5G27260 | 31.469 | 143 | 92 | 4 | 322 | 462 | 17 | 155 | 4.91e-11 | 64.7 |
MS.gene050855.t1 | AT4G29780 | 25.688 | 218 | 138 | 6 | 108 | 312 | 322 | 528 | 5.96e-11 | 65.9 |
Find 126 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGTTAGTTGTGGGTGTTTC+TGG | 0.116244 | 7.3:+4883829 | None:intergenic |
GTCAAATTCATTGAACAAAT+TGG | 0.123596 | 7.3:-4883692 | MS.gene050855:CDS |
AAAACAACCTAAACCAATTT+TGG | 0.140115 | 7.3:-4885503 | MS.gene050855:CDS |
GGTCCAGGTGCAAGTGGTTT+TGG | 0.158436 | 7.3:-4884220 | MS.gene050855:CDS |
GATAGCTTGGATACTGTATT+TGG | 0.169898 | 7.3:-4883994 | MS.gene050855:CDS |
TTCTCGACCAAATGGTTTAA+AGG | 0.180350 | 7.3:-4885251 | MS.gene050855:CDS |
GATCCTTTGGAAATAAATTT+AGG | 0.197488 | 7.3:-4884842 | MS.gene050855:CDS |
GTCGCAAAGGTTATTGTCTT+TGG | 0.283992 | 7.3:+4883507 | None:intergenic |
AGAAATGACATTGGATCCTT+TGG | 0.284461 | 7.3:-4884855 | MS.gene050855:CDS |
TCTGTGTTGCCCTCCAAAAT+TGG | 0.291608 | 7.3:+4885490 | None:intergenic |
TGTGACATGTTGCAAGTTAT+TGG | 0.297963 | 7.3:-4885706 | MS.gene050855:CDS |
GCATTTCAGTAATGTATTAT+TGG | 0.314714 | 7.3:-4885554 | MS.gene050855:CDS |
TGATTAGAAGACAATTTGTT+AGG | 0.357825 | 7.3:-4885597 | MS.gene050855:CDS |
AATTATTTACATGAGTGATT+TGG | 0.358633 | 7.3:-4885776 | None:intergenic |
TTGCCCTCCAAAATTGGTTT+AGG | 0.360631 | 7.3:+4885496 | None:intergenic |
AATGTAATAGAAAGATGTTT+TGG | 0.366224 | 7.3:-4884986 | MS.gene050855:CDS |
TTCACTCTTGATTCAATATG+TGG | 0.370372 | 7.3:+4884283 | None:intergenic |
ACATATATGAATTGTAAATC+TGG | 0.373490 | 7.3:+4885328 | None:intergenic |
TGAGGAACCTTTAAACCATT+TGG | 0.379841 | 7.3:+4885244 | None:intergenic |
TATCTACCTTTGTCAGCTTC+CGG | 0.382459 | 7.3:+4885400 | None:intergenic |
TGGCTTGAGGAAGCGGTTTG+TGG | 0.384622 | 7.3:-4883461 | MS.gene050855:CDS |
TCAAATTCATTGAACAAATT+GGG | 0.385007 | 7.3:-4883691 | MS.gene050855:CDS |
AGAAGACAATTTGTTAGGTC+TGG | 0.394249 | 7.3:-4885592 | MS.gene050855:CDS |
ACCAATACTCCATCTTCTTC+AGG | 0.398208 | 7.3:+4884433 | None:intergenic |
TGATACCTTTGACCTCTATA+AGG | 0.398826 | 7.3:+4885085 | None:intergenic |
ACCTGGGTACACTAAAGCTT+TGG | 0.401458 | 7.3:-4884353 | MS.gene050855:CDS |
TATTATTATTTATGTGATGC+TGG | 0.401796 | 7.3:-4885136 | MS.gene050855:CDS |
GTCGAGAAATAGCATCTCTA+AGG | 0.403893 | 7.3:+4885266 | None:intergenic |
AACGTGATTCTACTAATTAT+AGG | 0.406136 | 7.3:-4883771 | MS.gene050855:CDS |
GGAAGGTTTGTTGAAATTAG+TGG | 0.408222 | 7.3:-4884410 | MS.gene050855:CDS |
TCACGTTGTGGTTGGTTTGT+TGG | 0.419442 | 7.3:+4883787 | None:intergenic |
AAGCTATCATAGTGTGGAAA+TGG | 0.420710 | 7.3:+4884009 | None:intergenic |
TTCTGCAATCAAAGATATGT+TGG | 0.421190 | 7.3:-4884242 | MS.gene050855:CDS |
CACAACTAACACTACTGCTC+CGG | 0.433275 | 7.3:-4883818 | MS.gene050855:CDS |
TCAACACAAGAGGGCGGATC+AGG | 0.435640 | 7.3:-4883895 | MS.gene050855:CDS |
GAGATAGCTACAAATGTGTT+AGG | 0.438755 | 7.3:-4885361 | MS.gene050855:CDS |
GGATTTCTTACTCCTTATAG+AGG | 0.449800 | 7.3:-4885097 | MS.gene050855:CDS |
TGAAATTAGTGGACGAGGGT+TGG | 0.454770 | 7.3:-4884399 | MS.gene050855:CDS |
GCAACATGTCACATAGTTTG+TGG | 0.463824 | 7.3:+4885716 | None:intergenic |
TTGGGTGAGATTTATGCTAA+TGG | 0.472566 | 7.3:-4883673 | MS.gene050855:CDS |
AAAGATGATTGTAGTAGAGA+AGG | 0.475736 | 7.3:-4884182 | MS.gene050855:CDS |
ATACTCCTGGCTTGAGGAAG+CGG | 0.479782 | 7.3:-4883468 | MS.gene050855:CDS |
GATGCTATTTCTCGACCAAA+TGG | 0.486765 | 7.3:-4885259 | MS.gene050855:CDS |
CACCTTAGTGAGTGGAGGAA+TGG | 0.492062 | 7.3:-4885064 | MS.gene050855:CDS |
TGGCTTGCGTTGAAAATACA+AGG | 0.493139 | 7.3:-4885756 | MS.gene050855:CDS |
ATCCATTCCTCCACTCACTA+AGG | 0.493857 | 7.3:+4885062 | None:intergenic |
CACCCAAAACCACTTGCACC+TGG | 0.494386 | 7.3:+4884217 | None:intergenic |
TCTCCTAAATTTATTTCCAA+AGG | 0.503604 | 7.3:+4884839 | None:intergenic |
TATATTCACAACAAATTCCC+AGG | 0.506595 | 7.3:-4884325 | MS.gene050855:CDS |
AATTGTGTAGGAGCTCTTGA+TGG | 0.511250 | 7.3:-4885445 | MS.gene050855:CDS |
AGAAGGAGATTTATCGTCAA+TGG | 0.515104 | 7.3:-4884165 | MS.gene050855:CDS |
ATTTCCACACTATGATAGCT+TGG | 0.519974 | 7.3:-4884007 | MS.gene050855:CDS |
TGAAGAAGATGGAGTATTGG+TGG | 0.524039 | 7.3:-4884431 | MS.gene050855:CDS |
TCCTGAAGAAGATGGAGTAT+TGG | 0.524913 | 7.3:-4884434 | MS.gene050855:CDS |
CAATGGACTCCTGAAGAAGA+TGG | 0.527689 | 7.3:-4884442 | MS.gene050855:CDS |
TCACTCTTGATTCAATATGT+GGG | 0.528294 | 7.3:+4884284 | None:intergenic |
GAAGATGGAGTATTGGTGGA+AGG | 0.531767 | 7.3:-4884427 | MS.gene050855:CDS |
TCTGCAATCAAAGATATGTT+GGG | 0.532433 | 7.3:-4884241 | MS.gene050855:CDS |
AGGTAGATATAGAACAAGGA+AGG | 0.535159 | 7.3:-4885386 | MS.gene050855:CDS |
ATCAAAGATATGTTGGGTCC+AGG | 0.536960 | 7.3:-4884235 | MS.gene050855:CDS |
ACAAACCGCTTCCTCAAGCC+AGG | 0.540000 | 7.3:+4883463 | None:intergenic |
TTATACAAGCCAACTGCGGT+AGG | 0.541574 | 7.3:+4884036 | None:intergenic |
GGTCTGGTGAAACGATTAGT+AGG | 0.541722 | 7.3:-4885576 | MS.gene050855:CDS |
TCCAAAGCTTTAGTGTACCC+AGG | 0.543054 | 7.3:+4884352 | None:intergenic |
GTCTGATGAAGAAGTGGTAA+TGG | 0.546068 | 7.3:-4883545 | MS.gene050855:CDS |
ACAACTAACACTACTGCTCC+GGG | 0.546071 | 7.3:-4883817 | MS.gene050855:CDS |
ACGAGAAACACACAGCTGAT+AGG | 0.548293 | 7.3:-4883609 | MS.gene050855:CDS |
ATTATAGGAACGGAAAGCGT+GGG | 0.548490 | 7.3:-4883756 | MS.gene050855:CDS |
TTCTCTGATGAAGTCATGTC+CGG | 0.548643 | 7.3:-4884809 | MS.gene050855:CDS |
TGTGATGCTGGATACATGAA+TGG | 0.550292 | 7.3:-4885124 | MS.gene050855:CDS |
CATTGATATGACTATTGAGA+TGG | 0.551195 | 7.3:-4883935 | MS.gene050855:CDS |
GATAAAGCAGATGGTACTGT+AGG | 0.551746 | 7.3:-4883967 | MS.gene050855:CDS |
GGAGCAGTAGTGTTAGTTGT+GGG | 0.552884 | 7.3:+4883820 | None:intergenic |
ATTAGTGGACGAGGGTTGGA+AGG | 0.552892 | 7.3:-4884395 | MS.gene050855:CDS |
ATATGAAACATTCTTCAGCT+AGG | 0.555082 | 7.3:-4885009 | MS.gene050855:CDS |
CACTCTTGATTCAATATGTG+GGG | 0.559793 | 7.3:+4884285 | None:intergenic |
TTTGTTGAAATTAGTGGACG+AGG | 0.562026 | 7.3:-4884404 | MS.gene050855:CDS |
GATGCAAACTCATTTAAACC+TGG | 0.563444 | 7.3:-4884370 | MS.gene050855:CDS |
TCTTGATGGCACTTACATCA+AGG | 0.564289 | 7.3:-4885431 | MS.gene050855:CDS |
AATTATAGGAACGGAAAGCG+TGG | 0.572400 | 7.3:-4883757 | MS.gene050855:CDS |
GACATGTTGCAAGTTATTGG+TGG | 0.572683 | 7.3:-4885703 | MS.gene050855:CDS |
TTACTCCTTATAGAGGTCAA+AGG | 0.573713 | 7.3:-4885090 | MS.gene050855:CDS |
TAGTAGAATCACGTTGTGGT+TGG | 0.574703 | 7.3:+4883779 | None:intergenic |
TATTCGCAAAGAAATGACAT+TGG | 0.576923 | 7.3:-4884864 | MS.gene050855:CDS |
CACCGTAGTTATCATGTCAC+CGG | 0.578583 | 7.3:+4884790 | None:intergenic |
CGGAGCAGTAGTGTTAGTTG+TGG | 0.579402 | 7.3:+4883819 | None:intergenic |
ACACATGTGTGTGGAGGAGT+TGG | 0.585582 | 7.3:-4885665 | MS.gene050855:CDS |
TTTGGAAAAGATAAAGCAGA+TGG | 0.586596 | 7.3:-4883976 | MS.gene050855:CDS |
TATACAAGCCAACTGCGGTA+GGG | 0.587340 | 7.3:+4884037 | None:intergenic |
TGGTTTGTTGGATTTGAACC+CGG | 0.587761 | 7.3:+4883799 | None:intergenic |
TTGTTGAAATTAGTGGACGA+GGG | 0.590054 | 7.3:-4884403 | MS.gene050855:CDS |
TTACATCAAGGTCAATGTGC+CGG | 0.590931 | 7.3:-4885419 | MS.gene050855:CDS |
TAAGAATCACAAAGCGACAA+TGG | 0.591726 | 7.3:-4884459 | MS.gene050855:CDS |
GCAGCTGATCCCTCCCAACC+AGG | 0.594468 | 7.3:+4885301 | None:intergenic |
ATGCAAACTCATTTAAACCT+GGG | 0.599381 | 7.3:-4884369 | MS.gene050855:CDS |
ATGTTGGGTCCAGGTGCAAG+TGG | 0.603177 | 7.3:-4884226 | MS.gene050855:CDS |
GATTCTACTAATTATAGGAA+CGG | 0.604046 | 7.3:-4883766 | MS.gene050855:CDS |
CAATGGATACTCCTGGCTTG+AGG | 0.604084 | 7.3:-4883474 | MS.gene050855:CDS |
GAGTTGTTGAATAGATGGAC+GGG | 0.607031 | 7.3:-4884501 | MS.gene050855:intron |
GATGAAGAAGTGGTAATGGC+TGG | 0.607200 | 7.3:-4883541 | MS.gene050855:CDS |
AATGGTTTAAAGGTTCCTCA+AGG | 0.609493 | 7.3:-4885241 | MS.gene050855:intron |
TATGACTATTGAGATGGAGA+AGG | 0.615365 | 7.3:-4883929 | MS.gene050855:CDS |
CAGTCTCACCCTACCGCAGT+TGG | 0.617770 | 7.3:-4884045 | MS.gene050855:CDS |
AAAGGTATCACCTTAGTGAG+TGG | 0.618563 | 7.3:-4885072 | MS.gene050855:CDS |
GGTAGATATAGAACAAGGAA+GGG | 0.618775 | 7.3:-4885385 | MS.gene050855:CDS |
AAATGTTCAATCAACACAAG+AGG | 0.626386 | 7.3:-4883905 | MS.gene050855:CDS |
AGAAACACACAGCTGATAGG+AGG | 0.626406 | 7.3:-4883606 | MS.gene050855:CDS |
GCTGGATACATGAATGGAGA+AGG | 0.632475 | 7.3:-4885118 | MS.gene050855:CDS |
GATTTATCGTCAATGGTGCA+AGG | 0.635917 | 7.3:-4884158 | MS.gene050855:intron |
TGAGTTGTTGAATAGATGGA+CGG | 0.636038 | 7.3:-4884502 | MS.gene050855:intron |
TCCTACTCGACACATGTGTG+TGG | 0.639193 | 7.3:-4885674 | MS.gene050855:CDS |
GTCCGGTGACATGATAACTA+CGG | 0.641608 | 7.3:-4884792 | MS.gene050855:intron |
GGTATCACCTTAGTGAGTGG+AGG | 0.642466 | 7.3:-4885069 | MS.gene050855:CDS |
AGGATTGTCTGATGAAGAAG+TGG | 0.642904 | 7.3:-4883551 | MS.gene050855:CDS |
TTATAGGAACGGAAAGCGTG+GGG | 0.650988 | 7.3:-4883755 | MS.gene050855:CDS |
TACTCGACACATGTGTGTGG+AGG | 0.653616 | 7.3:-4885671 | MS.gene050855:CDS |
AATGTTCAATCAACACAAGA+GGG | 0.654380 | 7.3:-4883904 | MS.gene050855:CDS |
TTGCGTTGAAAATACAAGGA+TGG | 0.654392 | 7.3:-4885752 | MS.gene050855:CDS |
AGGGCAACACAGACGAACGA+TGG | 0.667738 | 7.3:-4885480 | MS.gene050855:CDS |
GTATCCAAGCTATCATAGTG+TGG | 0.667913 | 7.3:+4884003 | None:intergenic |
TAATTAGTAGAATCACGTTG+TGG | 0.667964 | 7.3:+4883775 | None:intergenic |
TCCACACACATGTGTCGAGT+AGG | 0.675300 | 7.3:+4885673 | None:intergenic |
AATGTGCCGGAAGCTGACAA+AGG | 0.679136 | 7.3:-4885406 | MS.gene050855:CDS |
ACAAAGGTAGATATAGAACA+AGG | 0.691343 | 7.3:-4885390 | MS.gene050855:CDS |
GTTCAATCAACACAAGAGGG+CGG | 0.700627 | 7.3:-4883901 | MS.gene050855:CDS |
TATAGGAACGGAAAGCGTGG+GGG | 0.729484 | 7.3:-4883754 | MS.gene050855:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTCATTAGATATATTTAAT+AGG | - | chr7.3:4884465-4884484 | MS.gene050855:CDS | 10.0% |
!! | TTCATATTGAAAAATTCTTT+AGG | + | chr7.3:4884173-4884192 | None:intergenic | 15.0% |
!!! | AAATACTTTAAAAATTGTGT+AGG | - | chr7.3:4883738-4883757 | MS.gene050855:CDS | 15.0% |
!!! | ACTTCAATTTTATTTATGAT+AGG | - | chr7.3:4884035-4884054 | MS.gene050855:CDS | 15.0% |
!!! | CTTCAATTTTATTTATGATA+GGG | - | chr7.3:4884036-4884055 | MS.gene050855:CDS | 15.0% |
!!! | TCTATTTTAAAAGAAATTGA+AGG | - | chr7.3:4885624-4885643 | MS.gene050855:CDS | 15.0% |
!! | ACATATATGAATTGTAAATC+TGG | + | chr7.3:4883870-4883889 | None:intergenic | 20.0% |
!! | CATTAGATATATTTAATAGG+TGG | - | chr7.3:4884468-4884487 | MS.gene050855:CDS | 20.0% |
!! | TATCATGAATTTATCAATTG+TGG | + | chr7.3:4885082-4885101 | None:intergenic | 20.0% |
!! | TATTATTATTTATGTGATGC+TGG | - | chr7.3:4884059-4884078 | MS.gene050855:intron | 20.0% |
!! | TCAAATTCATTGAACAAATT+GGG | - | chr7.3:4885504-4885523 | MS.gene050855:CDS | 20.0% |
!!! | AATGTAATAGAAAGATGTTT+TGG | - | chr7.3:4884209-4884228 | MS.gene050855:CDS | 20.0% |
!!! | CTTTTAAAATAGAGACAATT+TGG | + | chr7.3:4885617-4885636 | None:intergenic | 20.0% |
! | AACGTGATTCTACTAATTAT+AGG | - | chr7.3:4885424-4885443 | MS.gene050855:CDS | 25.0% |
! | GATTCTACTAATTATAGGAA+CGG | - | chr7.3:4885429-4885448 | MS.gene050855:CDS | 25.0% |
! | GCATTTCAGTAATGTATTAT+TGG | - | chr7.3:4883641-4883660 | MS.gene050855:CDS | 25.0% |
! | GTCAAATTCATTGAACAAAT+TGG | - | chr7.3:4885503-4885522 | MS.gene050855:CDS | 25.0% |
! | TCTCCTAAATTTATTTCCAA+AGG | + | chr7.3:4884359-4884378 | None:intergenic | 25.0% |
! | TGCCAATATATGTAAAAACA+TGG | + | chr7.3:4883559-4883578 | None:intergenic | 25.0% |
!! | AAAAATTCTTTAGGAGTAGA+TGG | + | chr7.3:4884164-4884183 | None:intergenic | 25.0% |
!! | AAAACAACCTAAACCAATTT+TGG | - | chr7.3:4883692-4883711 | MS.gene050855:CDS | 25.0% |
!! | AGCATATTTTGCATAGTTTA+TGG | - | chr7.3:4884006-4884025 | MS.gene050855:CDS | 25.0% |
!! | ATTTATACTTTTGTACCTTG+AGG | + | chr7.3:4883972-4883991 | None:intergenic | 25.0% |
!! | GATCCTTTGGAAATAAATTT+AGG | - | chr7.3:4884353-4884372 | MS.gene050855:CDS | 25.0% |
!! | TGATTAGAAGACAATTTGTT+AGG | - | chr7.3:4883598-4883617 | MS.gene050855:CDS | 25.0% |
!! | TTTTATCCTGTAAAAACTCA+AGG | - | chr7.3:4884272-4884291 | MS.gene050855:CDS | 25.0% |
AAAGATGATTGTAGTAGAGA+AGG | - | chr7.3:4885013-4885032 | MS.gene050855:CDS | 30.0% | |
AAATGTTCAATCAACACAAG+AGG | - | chr7.3:4885290-4885309 | MS.gene050855:CDS | 30.0% | |
AATGTTCAATCAACACAAGA+GGG | - | chr7.3:4885291-4885310 | MS.gene050855:CDS | 30.0% | |
ACAAAGGTAGATATAGAACA+AGG | - | chr7.3:4883805-4883824 | MS.gene050855:CDS | 30.0% | |
ATATGAAACATTCTTCAGCT+AGG | - | chr7.3:4884186-4884205 | MS.gene050855:CDS | 30.0% | |
ATGCAAACTCATTTAAACCT+GGG | - | chr7.3:4884826-4884845 | MS.gene050855:CDS | 30.0% | |
CATTGATATGACTATTGAGA+TGG | - | chr7.3:4885260-4885279 | MS.gene050855:CDS | 30.0% | |
GATATATTTAATAGGTGGAG+AGG | - | chr7.3:4884473-4884492 | MS.gene050855:CDS | 30.0% | |
TAATTAGTAGAATCACGTTG+TGG | + | chr7.3:4885423-4885442 | None:intergenic | 30.0% | |
TATATTCACAACAAATTCCC+AGG | - | chr7.3:4884870-4884889 | MS.gene050855:CDS | 30.0% | |
TATTCGCAAAGAAATGACAT+TGG | - | chr7.3:4884331-4884350 | MS.gene050855:CDS | 30.0% | |
TCACTCTTGATTCAATATGT+GGG | + | chr7.3:4884914-4884933 | None:intergenic | 30.0% | |
TCTGCAATCAAAGATATGTT+GGG | - | chr7.3:4884954-4884973 | MS.gene050855:CDS | 30.0% | |
TTCACTCTTGATTCAATATG+TGG | + | chr7.3:4884915-4884934 | None:intergenic | 30.0% | |
TTCTGCAATCAAAGATATGT+TGG | - | chr7.3:4884953-4884972 | MS.gene050855:CDS | 30.0% | |
TTGTGAAAAAATAGTCGCAA+AGG | + | chr7.3:4885704-4885723 | None:intergenic | 30.0% | |
TTTGGAAAAGATAAAGCAGA+TGG | - | chr7.3:4885219-4885238 | MS.gene050855:intron | 30.0% | |
! | ATTCTTCCTTGAGTTTTTAC+AGG | + | chr7.3:4884281-4884300 | None:intergenic | 30.0% |
! | CAATTCATATATGTTTTGCC+TGG | - | chr7.3:4883876-4883895 | MS.gene050855:CDS | 30.0% |
! | TTGTTGAGTTGTTGAATAGA+TGG | - | chr7.3:4884689-4884708 | MS.gene050855:intron | 30.0% |
!! | AGATGTTTTGGACTTTTGAA+AGG | - | chr7.3:4884221-4884240 | MS.gene050855:CDS | 30.0% |
!! | CGCCATGTTTTTACATATAT+TGG | - | chr7.3:4883554-4883573 | MS.gene050855:CDS | 30.0% |
!! | TTTTGAGTAACAATGGTACT+AGG | - | chr7.3:4885763-4885782 | MS.gene050855:CDS | 30.0% |
!!! | GACATTGTTTTGAGTAACAA+TGG | - | chr7.3:4885756-4885775 | MS.gene050855:CDS | 30.0% |
!!! | TTGCGACTATTTTTTCACAA+TGG | - | chr7.3:4885704-4885723 | MS.gene050855:CDS | 30.0% |
!!! | TTTTTTATACAAGCCAACTG+CGG | + | chr7.3:4885166-4885185 | None:intergenic | 30.0% |
AAGCTATCATAGTGTGGAAA+TGG | + | chr7.3:4885189-4885208 | None:intergenic | 35.0% | |
AATGGTTTAAAGGTTCCTCA+AGG | - | chr7.3:4883954-4883973 | MS.gene050855:CDS | 35.0% | |
AGAAATGACATTGGATCCTT+TGG | - | chr7.3:4884340-4884359 | MS.gene050855:CDS | 35.0% | |
AGAAGGAGATTTATCGTCAA+TGG | - | chr7.3:4885030-4885049 | MS.gene050855:CDS | 35.0% | |
AGGTAGATATAGAACAAGGA+AGG | - | chr7.3:4883809-4883828 | MS.gene050855:CDS | 35.0% | |
ATATTTAATAGGTGGAGAGG+TGG | - | chr7.3:4884476-4884495 | MS.gene050855:CDS | 35.0% | |
ATTTCCACACTATGATAGCT+TGG | - | chr7.3:4885188-4885207 | MS.gene050855:intron | 35.0% | |
CACTCTTGATTCAATATGTG+GGG | + | chr7.3:4884913-4884932 | None:intergenic | 35.0% | |
GAGATAGCTACAAATGTGTT+AGG | - | chr7.3:4883834-4883853 | MS.gene050855:CDS | 35.0% | |
GATAGCTTGGATACTGTATT+TGG | - | chr7.3:4885201-4885220 | MS.gene050855:intron | 35.0% | |
GATGCAAACTCATTTAAACC+TGG | - | chr7.3:4884825-4884844 | MS.gene050855:CDS | 35.0% | |
GGATTTCTTACTCCTTATAG+AGG | - | chr7.3:4884098-4884117 | MS.gene050855:intron | 35.0% | |
GGTAGATATAGAACAAGGAA+GGG | - | chr7.3:4883810-4883829 | MS.gene050855:CDS | 35.0% | |
TAAGAATCACAAAGCGACAA+TGG | - | chr7.3:4884736-4884755 | MS.gene050855:intron | 35.0% | |
TATGACTATTGAGATGGAGA+AGG | - | chr7.3:4885266-4885285 | MS.gene050855:CDS | 35.0% | |
TGAGGAACCTTTAAACCATT+TGG | + | chr7.3:4883954-4883973 | None:intergenic | 35.0% | |
TGAGTTGTTGAATAGATGGA+CGG | - | chr7.3:4884693-4884712 | MS.gene050855:intron | 35.0% | |
TGATACCTTTGACCTCTATA+AGG | + | chr7.3:4884113-4884132 | None:intergenic | 35.0% | |
TGTGACATGTTGCAAGTTAT+TGG | - | chr7.3:4883489-4883508 | MS.gene050855:CDS | 35.0% | |
TTACTCCTTATAGAGGTCAA+AGG | - | chr7.3:4884105-4884124 | MS.gene050855:intron | 35.0% | |
TTCTCGACCAAATGGTTTAA+AGG | - | chr7.3:4883944-4883963 | MS.gene050855:CDS | 35.0% | |
TTGCGTTGAAAATACAAGGA+TGG | - | chr7.3:4883443-4883462 | MS.gene050855:CDS | 35.0% | |
TTGGGTGAGATTTATGCTAA+TGG | - | chr7.3:4885522-4885541 | MS.gene050855:CDS | 35.0% | |
! | ACAACCTAAACCAATTTTGG+AGG | - | chr7.3:4883695-4883714 | MS.gene050855:CDS | 35.0% |
! | CAACCTAAACCAATTTTGGA+GGG | - | chr7.3:4883696-4883715 | MS.gene050855:CDS | 35.0% |
! | CATATATGTTTTGCCTGGTT+GGG | - | chr7.3:4883881-4883900 | MS.gene050855:CDS | 35.0% |
! | TCATATATGTTTTGCCTGGT+TGG | - | chr7.3:4883880-4883899 | MS.gene050855:CDS | 35.0% |
! | TTGTTGAAATTAGTGGACGA+GGG | - | chr7.3:4884792-4884811 | MS.gene050855:intron | 35.0% |
! | TTTGTTGAAATTAGTGGACG+AGG | - | chr7.3:4884791-4884810 | MS.gene050855:intron | 35.0% |
! | TTTTTCACAATGGATACTCC+TGG | - | chr7.3:4885714-4885733 | MS.gene050855:CDS | 35.0% |
!! | AGAAGACAATTTGTTAGGTC+TGG | - | chr7.3:4883603-4883622 | MS.gene050855:CDS | 35.0% |
!! | GGAAGGTTTGTTGAAATTAG+TGG | - | chr7.3:4884785-4884804 | MS.gene050855:intron | 35.0% |
AATTATAGGAACGGAAAGCG+TGG | - | chr7.3:4885438-4885457 | MS.gene050855:CDS | 40.0% | |
AATTGTGTAGGAGCTCTTGA+TGG | - | chr7.3:4883750-4883769 | MS.gene050855:CDS | 40.0% | |
ACCAATACTCCATCTTCTTC+AGG | + | chr7.3:4884765-4884784 | None:intergenic | 40.0% | |
AGGATTGTCTGATGAAGAAG+TGG | - | chr7.3:4885644-4885663 | MS.gene050855:CDS | 40.0% | |
ATCAAAGATATGTTGGGTCC+AGG | - | chr7.3:4884960-4884979 | MS.gene050855:CDS | 40.0% | |
GACATGTTGCAAGTTATTGG+TGG | - | chr7.3:4883492-4883511 | MS.gene050855:CDS | 40.0% | |
GAGTTGTTGAATAGATGGAC+GGG | - | chr7.3:4884694-4884713 | MS.gene050855:intron | 40.0% | |
GATAAAGCAGATGGTACTGT+AGG | - | chr7.3:4885228-4885247 | MS.gene050855:intron | 40.0% | |
GATTTATCGTCAATGGTGCA+AGG | - | chr7.3:4885037-4885056 | MS.gene050855:CDS | 40.0% | |
GCAACATGTCACATAGTTTG+TGG | + | chr7.3:4883482-4883501 | None:intergenic | 40.0% | |
GTATCCAAGCTATCATAGTG+TGG | + | chr7.3:4885195-4885214 | None:intergenic | 40.0% | |
GTCGAGAAATAGCATCTCTA+AGG | + | chr7.3:4883932-4883951 | None:intergenic | 40.0% | |
GTCGCAAAGGTTATTGTCTT+TGG | + | chr7.3:4885691-4885710 | None:intergenic | 40.0% | |
GTCTGATGAAGAAGTGGTAA+TGG | - | chr7.3:4885650-4885669 | MS.gene050855:CDS | 40.0% | |
TAGTAGAATCACGTTGTGGT+TGG | + | chr7.3:4885419-4885438 | None:intergenic | 40.0% | |
TATCTACCTTTGTCAGCTTC+CGG | + | chr7.3:4883798-4883817 | None:intergenic | 40.0% | |
TCCTGAAGAAGATGGAGTAT+TGG | - | chr7.3:4884761-4884780 | MS.gene050855:intron | 40.0% | |
TGTGATGCTGGATACATGAA+TGG | - | chr7.3:4884071-4884090 | MS.gene050855:intron | 40.0% | |
TTACATCAAGGTCAATGTGC+CGG | - | chr7.3:4883776-4883795 | MS.gene050855:CDS | 40.0% | |
TTCTCTGATGAAGTCATGTC+CGG | - | chr7.3:4884386-4884405 | MS.gene050855:CDS | 40.0% | |
! | ATTATAGGAACGGAAAGCGT+GGG | - | chr7.3:4885439-4885458 | MS.gene050855:CDS | 40.0% |
! | TAGCTTTTAGTGTGCAACCT+GGG | + | chr7.3:4884890-4884909 | None:intergenic | 40.0% |
! | TCTTGATGGCACTTACATCA+AGG | - | chr7.3:4883764-4883783 | MS.gene050855:CDS | 40.0% |
! | TGGCTTGCGTTGAAAATACA+AGG | - | chr7.3:4883439-4883458 | MS.gene050855:CDS | 40.0% |
! | TTGCCCTCCAAAATTGGTTT+AGG | + | chr7.3:4883702-4883721 | None:intergenic | 40.0% |
!! | AAAGGTATCACCTTAGTGAG+TGG | - | chr7.3:4884123-4884142 | MS.gene050855:intron | 40.0% |
!! | GATGCTATTTCTCGACCAAA+TGG | - | chr7.3:4883936-4883955 | MS.gene050855:CDS | 40.0% |
!! | TGAAGAAGATGGAGTATTGG+TGG | - | chr7.3:4884764-4884783 | MS.gene050855:intron | 40.0% |
!! | TGGACTTTTGAAAGGACGTT+GGG | - | chr7.3:4884229-4884248 | MS.gene050855:CDS | 40.0% |
!! | TGGTTTGTTGGATTTGAACC+CGG | + | chr7.3:4885399-4885418 | None:intergenic | 40.0% |
!! | TTGGACTTTTGAAAGGACGT+TGG | - | chr7.3:4884228-4884247 | MS.gene050855:CDS | 40.0% |
ACAACTAACACTACTGCTCC+GGG | - | chr7.3:4885378-4885397 | MS.gene050855:CDS | 45.0% | |
ACCTGGGTACACTAAAGCTT+TGG | - | chr7.3:4884842-4884861 | MS.gene050855:CDS | 45.0% | |
ACGAGAAACACACAGCTGAT+AGG | - | chr7.3:4885586-4885605 | MS.gene050855:CDS | 45.0% | |
AGAAACACACAGCTGATAGG+AGG | - | chr7.3:4885589-4885608 | MS.gene050855:CDS | 45.0% | |
ATCCATTCCTCCACTCACTA+AGG | + | chr7.3:4884136-4884155 | None:intergenic | 45.0% | |
CAAGTACGACATGGAGTCAA+TGG | - | chr7.3:4884432-4884451 | MS.gene050855:CDS | 45.0% | |
CACAACTAACACTACTGCTC+CGG | - | chr7.3:4885377-4885396 | MS.gene050855:CDS | 45.0% | |
CACCGTAGTTATCATGTCAC+CGG | + | chr7.3:4884408-4884427 | None:intergenic | 45.0% | |
GCTGGATACATGAATGGAGA+AGG | - | chr7.3:4884077-4884096 | MS.gene050855:intron | 45.0% | |
GGAGCAGTAGTGTTAGTTGT+GGG | + | chr7.3:4885378-4885397 | None:intergenic | 45.0% | |
GGTCTGGTGAAACGATTAGT+AGG | - | chr7.3:4883619-4883638 | MS.gene050855:CDS | 45.0% | |
GTCCGGTGACATGATAACTA+CGG | - | chr7.3:4884403-4884422 | MS.gene050855:CDS | 45.0% | |
GTGTTAGTTGTGGGTGTTTC+TGG | + | chr7.3:4885369-4885388 | None:intergenic | 45.0% | |
GTTCAATCAACACAAGAGGG+CGG | - | chr7.3:4885294-4885313 | MS.gene050855:CDS | 45.0% | |
TATACAAGCCAACTGCGGTA+GGG | + | chr7.3:4885161-4885180 | None:intergenic | 45.0% | |
TCTGTGTTGCCCTCCAAAAT+TGG | + | chr7.3:4883708-4883727 | None:intergenic | 45.0% | |
TTATACAAGCCAACTGCGGT+AGG | + | chr7.3:4885162-4885181 | None:intergenic | 45.0% | |
! | ATATGTTTTGCCTGGTTGGG+AGG | - | chr7.3:4883884-4883903 | MS.gene050855:CDS | 45.0% |
! | CAATGGACTCCTGAAGAAGA+TGG | - | chr7.3:4884753-4884772 | MS.gene050855:intron | 45.0% |
! | GTAGCTTTTAGTGTGCAACC+TGG | + | chr7.3:4884891-4884910 | None:intergenic | 45.0% |
! | TATGTTTTGCCTGGTTGGGA+GGG | - | chr7.3:4883885-4883904 | MS.gene050855:CDS | 45.0% |
! | TCCAAAGCTTTAGTGTACCC+AGG | + | chr7.3:4884846-4884865 | None:intergenic | 45.0% |
! | TGAAATTAGTGGACGAGGGT+TGG | - | chr7.3:4884796-4884815 | MS.gene050855:CDS | 45.0% |
! | TTATAGGAACGGAAAGCGTG+GGG | - | chr7.3:4885440-4885459 | MS.gene050855:CDS | 45.0% |
!! | CATTGACTCCATGTCGTACT+TGG | + | chr7.3:4884434-4884453 | None:intergenic | 45.0% |
!! | GAAGATGGAGTATTGGTGGA+AGG | - | chr7.3:4884768-4884787 | MS.gene050855:intron | 45.0% |
!! | GATGAAGAAGTGGTAATGGC+TGG | - | chr7.3:4885654-4885673 | MS.gene050855:CDS | 45.0% |
!! | TCACGTTGTGGTTGGTTTGT+TGG | + | chr7.3:4885411-4885430 | None:intergenic | 45.0% |
AATGTGCCGGAAGCTGACAA+AGG | - | chr7.3:4883789-4883808 | MS.gene050855:CDS | 50.0% | |
ACACATGTGTGTGGAGGAGT+TGG | - | chr7.3:4883530-4883549 | MS.gene050855:CDS | 50.0% | |
CACCTTAGTGAGTGGAGGAA+TGG | - | chr7.3:4884131-4884150 | MS.gene050855:intron | 50.0% | |
CGGAGCAGTAGTGTTAGTTG+TGG | + | chr7.3:4885379-4885398 | None:intergenic | 50.0% | |
CGGTGACATGATAACTACGG+TGG | - | chr7.3:4884406-4884425 | MS.gene050855:CDS | 50.0% | |
GGTATCACCTTAGTGAGTGG+AGG | - | chr7.3:4884126-4884145 | MS.gene050855:intron | 50.0% | |
GTAGGGTGAGACTGCGTTAA+AGG | + | chr7.3:4885144-4885163 | None:intergenic | 50.0% | |
TACTCGACACATGTGTGTGG+AGG | - | chr7.3:4883524-4883543 | MS.gene050855:CDS | 50.0% | |
TCCACACACATGTGTCGAGT+AGG | + | chr7.3:4883525-4883544 | None:intergenic | 50.0% | |
TCCTACTCGACACATGTGTG+TGG | - | chr7.3:4883521-4883540 | MS.gene050855:CDS | 50.0% | |
! | ATACTCCTGGCTTGAGGAAG+CGG | - | chr7.3:4885727-4885746 | MS.gene050855:CDS | 50.0% |
! | ATTAGTGGACGAGGGTTGGA+AGG | - | chr7.3:4884800-4884819 | MS.gene050855:CDS | 50.0% |
! | CAATGGATACTCCTGGCTTG+AGG | - | chr7.3:4885721-4885740 | MS.gene050855:CDS | 50.0% |
! | GTCCAGGTGCAAGTGGTTTT+GGG | - | chr7.3:4884976-4884995 | MS.gene050855:CDS | 50.0% |
! | TATAGGAACGGAAAGCGTGG+GGG | - | chr7.3:4885441-4885460 | MS.gene050855:CDS | 50.0% |
ACAAACCGCTTCCTCAAGCC+AGG | + | chr7.3:4885735-4885754 | None:intergenic | 55.0% | |
AGGGCAACACAGACGAACGA+TGG | - | chr7.3:4883715-4883734 | MS.gene050855:CDS | 55.0% | |
ATGTTGGGTCCAGGTGCAAG+TGG | - | chr7.3:4884969-4884988 | MS.gene050855:CDS | 55.0% | |
CACCCAAAACCACTTGCACC+TGG | + | chr7.3:4884981-4885000 | None:intergenic | 55.0% | |
TCAACACAAGAGGGCGGATC+AGG | - | chr7.3:4885300-4885319 | MS.gene050855:CDS | 55.0% | |
TGGCTTGAGGAAGCGGTTTG+TGG | - | chr7.3:4885734-4885753 | MS.gene050855:CDS | 55.0% | |
! | ACGGAAAGCGTGGGGGAAAA+AGG | - | chr7.3:4885448-4885467 | MS.gene050855:CDS | 55.0% |
! | CGGAAAGCGTGGGGGAAAAA+GGG | - | chr7.3:4885449-4885468 | MS.gene050855:CDS | 55.0% |
! | GGTCCAGGTGCAAGTGGTTT+TGG | - | chr7.3:4884975-4884994 | MS.gene050855:CDS | 55.0% |
!!! | CAGGTGCAAGTGGTTTTGGG+TGG | - | chr7.3:4884979-4884998 | MS.gene050855:CDS | 55.0% |
CAGTCTCACCCTACCGCAGT+TGG | - | chr7.3:4885150-4885169 | MS.gene050855:intron | 60.0% | |
CGGTGGAGCCAAGTACGACA+TGG | - | chr7.3:4884423-4884442 | MS.gene050855:CDS | 60.0% | |
GCAGCTGATCCCTCCCAACC+AGG | + | chr7.3:4883897-4883916 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 4883429 | 4885788 | 4883429 | ID=MS.gene050855 |
chr7.3 | mRNA | 4883429 | 4885788 | 4883429 | ID=MS.gene050855.t1;Parent=MS.gene050855 |
chr7.3 | exon | 4885242 | 4885788 | 4885242 | ID=MS.gene050855.t1.exon1;Parent=MS.gene050855.t1 |
chr7.3 | CDS | 4885242 | 4885788 | 4885242 | ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1 |
chr7.3 | exon | 4884793 | 4885160 | 4884793 | ID=MS.gene050855.t1.exon2;Parent=MS.gene050855.t1 |
chr7.3 | CDS | 4884793 | 4885160 | 4884793 | ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1 |
chr7.3 | exon | 4884159 | 4884509 | 4884159 | ID=MS.gene050855.t1.exon3;Parent=MS.gene050855.t1 |
chr7.3 | CDS | 4884159 | 4884509 | 4884159 | ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1 |
chr7.3 | exon | 4883429 | 4884064 | 4883429 | ID=MS.gene050855.t1.exon4;Parent=MS.gene050855.t1 |
chr7.3 | CDS | 4883429 | 4884064 | 4883429 | ID=cds.MS.gene050855.t1;Parent=MS.gene050855.t1 |
Gene Sequence |
Protein sequence |