Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09535.t1 | GAU41425.1 | 88.4 | 224 | 26 | 0 | 1 | 224 | 242 | 465 | 3.40E-112 | 414.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09535.t1 | Q6F2U9 | 78.6 | 224 | 47 | 1 | 1 | 224 | 251 | 473 | 4.6e-102 | 372.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09535.t1 | A0A2Z6NZL5 | 88.4 | 224 | 26 | 0 | 1 | 224 | 242 | 465 | 2.4e-112 | 414.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05351 | MS.gene09535 | 0.816288 | 5.97E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09535.t1 | MTR_2g036600 | 85.463 | 227 | 33 | 0 | 1 | 227 | 101 | 327 | 5.56e-141 | 403 |
MS.gene09535.t1 | MTR_2g036600 | 85.463 | 227 | 33 | 0 | 1 | 227 | 242 | 468 | 1.26e-139 | 404 |
MS.gene09535.t1 | MTR_4g127790 | 74.009 | 227 | 59 | 0 | 1 | 227 | 40 | 266 | 1.17e-124 | 359 |
MS.gene09535.t1 | MTR_4g127770 | 77.974 | 227 | 50 | 0 | 1 | 227 | 729 | 955 | 6.32e-123 | 374 |
MS.gene09535.t1 | MTR_4g127770 | 76.126 | 222 | 53 | 0 | 1 | 222 | 242 | 463 | 5.99e-117 | 358 |
MS.gene09535.t1 | MTR_8g007295 | 44.624 | 186 | 93 | 2 | 1 | 185 | 210 | 386 | 5.89e-49 | 167 |
MS.gene09535.t1 | MTR_8g007295 | 44.324 | 185 | 95 | 2 | 1 | 185 | 210 | 386 | 3.74e-48 | 167 |
MS.gene09535.t1 | MTR_8g104740 | 27.972 | 143 | 101 | 2 | 1 | 142 | 198 | 339 | 1.50e-11 | 63.9 |
MS.gene09535.t1 | MTR_8g104740 | 27.972 | 143 | 101 | 2 | 1 | 142 | 198 | 339 | 1.65e-11 | 63.9 |
MS.gene09535.t1 | MTR_4g120810 | 27.273 | 143 | 102 | 2 | 1 | 142 | 196 | 337 | 4.49e-11 | 62.4 |
MS.gene09535.t1 | MTR_4g120810 | 27.273 | 143 | 102 | 2 | 1 | 142 | 196 | 337 | 5.57e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09535.t1 | AT3G11710 | 74.890 | 227 | 56 | 1 | 1 | 227 | 260 | 485 | 2.43e-124 | 366 |
MS.gene09535.t1 | AT3G13490 | 44.324 | 185 | 95 | 2 | 1 | 185 | 232 | 408 | 1.04e-46 | 163 |
MS.gene09535.t1 | AT4G33760 | 30.070 | 143 | 98 | 2 | 1 | 142 | 64 | 205 | 1.67e-13 | 69.7 |
MS.gene09535.t1 | AT4G33760 | 30.070 | 143 | 98 | 2 | 1 | 142 | 200 | 341 | 2.51e-13 | 69.3 |
Find 67 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAACCGTGTTTACGAAAT+TGG | 0.146056 | 2.4:+65390145 | MS.gene09535:CDS |
ACGAAATTGGGAAACAATTT+AGG | 0.155882 | 2.4:+65390158 | MS.gene09535:CDS |
CCTGGACAAGCTTGATTTCT+TGG | 0.201277 | 2.4:+65389888 | MS.gene09535:CDS |
GTCTCAAGGAGTTGGTTGTT+GGG | 0.245178 | 2.4:+65390119 | MS.gene09535:CDS |
TATGGATTACAATGACTTAA+TGG | 0.264146 | 2.4:+65390243 | MS.gene09535:CDS |
TTCATCACCCGACAAGTCTT+TGG | 0.272639 | 2.4:-65390625 | None:intergenic |
CTAAAATCATTTCTTACATT+AGG | 0.308337 | 2.4:+65389860 | MS.gene09535:CDS |
AGCAAACGAGCAGTTGTTTC+AGG | 0.319184 | 2.4:-65390702 | None:intergenic |
TGTCTCAAGGAGTTGGTTGT+TGG | 0.321048 | 2.4:+65390118 | MS.gene09535:CDS |
TGAAACAACTGCTCGTTTGC+TGG | 0.340487 | 2.4:+65390704 | MS.gene09535:CDS |
TAGACTTTACTCCGCCATTC+AGG | 0.341586 | 2.4:+65390452 | MS.gene09535:CDS |
CCATGCAAATGGGACGGATA+TGG | 0.345124 | 2.4:+65390417 | MS.gene09535:CDS |
AAGATATCGGTCACGCCATT+TGG | 0.349743 | 2.4:+65389792 | MS.gene09535:CDS |
AACTCATTCTTGAGGTTTCA+TGG | 0.353994 | 2.4:-65390926 | None:intergenic |
TTCTTACATTAGGAGATTCC+TGG | 0.355860 | 2.4:+65389870 | MS.gene09535:CDS |
TTGAATATTTCCCGGACCTC+TGG | 0.366447 | 2.4:-65389829 | None:intergenic |
ACCTAGTCTTGAATATTTCC+CGG | 0.369434 | 2.4:-65389837 | None:intergenic |
AAAATTAAGTACCATGCAAA+TGG | 0.379315 | 2.4:+65390406 | MS.gene09535:CDS |
GATAGACATGATTGAAGGAT+TGG | 0.380910 | 2.4:+65390578 | MS.gene09535:CDS |
AACTGCTCGTTTGCTGGATA+AGG | 0.394190 | 2.4:+65390710 | MS.gene09535:CDS |
TCATCACCCGACAAGTCTTT+GGG | 0.398098 | 2.4:-65390624 | None:intergenic |
TGAACCGTGTTTACGAAATT+GGG | 0.423877 | 2.4:+65390146 | MS.gene09535:CDS |
GGAGTAAAGTCTATTTCAAT+AGG | 0.435082 | 2.4:-65390442 | None:intergenic |
GGACAAGCTTGATTTCTTGG+AGG | 0.440911 | 2.4:+65389891 | MS.gene09535:CDS |
TCTCAAGGAGTTGGTTGTTG+GGG | 0.441587 | 2.4:+65390120 | MS.gene09535:CDS |
CCAGCAACCACGTTCATCAT+AGG | 0.446743 | 2.4:-65390016 | None:intergenic |
TGATGCTTAATCCAGAGGTC+CGG | 0.450128 | 2.4:+65389818 | MS.gene09535:CDS |
CCTATGATGAACGTGGTTGC+TGG | 0.460350 | 2.4:+65390016 | MS.gene09535:CDS |
CATTCTTGAGGTTTCATGGT+AGG | 0.462260 | 2.4:-65390922 | None:intergenic |
CAATATTCCCAAAGACTTGT+CGG | 0.470222 | 2.4:+65390617 | MS.gene09535:CDS |
CTCAAGGAGTTGGTTGTTGG+GGG | 0.470592 | 2.4:+65390121 | MS.gene09535:CDS |
ATTCTTGAGGTTTCATGGTA+GGG | 0.499186 | 2.4:-65390921 | None:intergenic |
AGACATGATTGAAGGATTGG+AGG | 0.510151 | 2.4:+65390581 | MS.gene09535:CDS |
CGAGCAGTTGTTTCAGGAGG+GGG | 0.513041 | 2.4:-65390696 | None:intergenic |
AATATTCCCAAAGACTTGTC+GGG | 0.514245 | 2.4:+65390618 | MS.gene09535:CDS |
AAATTAAGTACCATGCAAAT+GGG | 0.521240 | 2.4:+65390407 | MS.gene09535:CDS |
GATGCTTAATCCAGAGGTCC+GGG | 0.524335 | 2.4:+65389819 | MS.gene09535:CDS |
AACTCCTTGAGACAGAGTTC+TGG | 0.527911 | 2.4:-65390109 | None:intergenic |
AGAAGGATAGACATGATTGA+AGG | 0.535654 | 2.4:+65390573 | MS.gene09535:intron |
GAAGGATTGGAGGAGATCGC+AGG | 0.536772 | 2.4:+65390591 | MS.gene09535:CDS |
ATGCACACCACACACCTGAA+TGG | 0.541661 | 2.4:-65390466 | None:intergenic |
TCGTCATCATGAGTTACAAA+TGG | 0.544832 | 2.4:-65390055 | None:intergenic |
GATTAAGCATCAAATCCAAA+TGG | 0.546598 | 2.4:-65389807 | None:intergenic |
ACAAGTCTTTGGGAATATTG+AGG | 0.551245 | 2.4:-65390614 | None:intergenic |
CCAAGAAATCAAGCTTGTCC+AGG | 0.553844 | 2.4:-65389888 | None:intergenic |
AGAACTCTGTCTCAAGGAGT+TGG | 0.559400 | 2.4:+65390111 | MS.gene09535:CDS |
GGATTTGATGCTTAATCCAG+AGG | 0.559948 | 2.4:+65389813 | MS.gene09535:CDS |
TGCTCCAGAACTCTGTCTCA+AGG | 0.561925 | 2.4:+65390105 | MS.gene09535:CDS |
TCAAGGAGTTGGTTGTTGGG+GGG | 0.564084 | 2.4:+65390122 | MS.gene09535:CDS |
AACGAGCAGTTGTTTCAGGA+GGG | 0.564568 | 2.4:-65390698 | None:intergenic |
TGCTTGAAAACTCATTCTTG+AGG | 0.587080 | 2.4:-65390934 | None:intergenic |
AAACGAGCAGTTGTTTCAGG+AGG | 0.598254 | 2.4:-65390699 | None:intergenic |
TGAAGCTAATCAATATCTGA+AGG | 0.602148 | 2.4:+65390644 | MS.gene09535:CDS |
GTTTCCCAATTTCGTAAACA+CGG | 0.608844 | 2.4:-65390150 | None:intergenic |
CCATATCCGTCCCATTTGCA+TGG | 0.611894 | 2.4:-65390417 | None:intergenic |
CATGGATATAGGAATGGTCA+AGG | 0.613863 | 2.4:+65390363 | MS.gene09535:intron |
AACTCACAGCTAGTAAACTC+AGG | 0.616203 | 2.4:-65390208 | None:intergenic |
GGGAAACAATTTAGGAACGA+GGG | 0.618126 | 2.4:+65390166 | MS.gene09535:CDS |
TCCGGGAAATATTCAAGACT+AGG | 0.618930 | 2.4:+65389836 | MS.gene09535:CDS |
TAAGTACCATGCAAATGGGA+CGG | 0.619763 | 2.4:+65390411 | MS.gene09535:CDS |
ACGAGCAGTTGTTTCAGGAG+GGG | 0.645089 | 2.4:-65390697 | None:intergenic |
TGGGAAACAATTTAGGAACG+AGG | 0.649909 | 2.4:+65390165 | MS.gene09535:CDS |
CACACCACACACCTGAATGG+CGG | 0.662497 | 2.4:-65390463 | None:intergenic |
ATGATGAACGTGGTTGCTGG+TGG | 0.670520 | 2.4:+65390019 | MS.gene09535:CDS |
ATGGTCAAGGAACTTACCAA+AGG | 0.673309 | 2.4:+65390376 | MS.gene09535:CDS |
ATAGCAGAGAACATGCTGAG+TGG | 0.719446 | 2.4:+65390268 | MS.gene09535:CDS |
TGAAACGCCTATGATGAACG+TGG | 0.836044 | 2.4:+65390009 | MS.gene09535:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2.4:65390737-65390756 | None:intergenic | 100.0% |
!! | TATTGATCAAGTTAATATTA+AGG | + | chr2.4:65390792-65390811 | MS.gene09535:intron | 15.0% |
!! | TTAAAAAATAACTCATGTTA+AGG | - | chr2.4:65390081-65390100 | None:intergenic | 15.0% |
!!! | TTTTATTTAATCTTTTATGC+TGG | + | chr2.4:65389932-65389951 | MS.gene09535:intron | 15.0% |
!!! | TTTTTTTTGAATGATTGATT+TGG | + | chr2.4:65390535-65390554 | MS.gene09535:intron | 15.0% |
!! | ATTAAATAAAACTCAAGTCA+TGG | - | chr2.4:65389923-65389942 | None:intergenic | 20.0% |
!! | CTAAAATCATTTCTTACATT+AGG | + | chr2.4:65389860-65389879 | MS.gene09535:CDS | 20.0% |
! | AAAATTAAGTACCATGCAAA+TGG | + | chr2.4:65390406-65390425 | MS.gene09535:CDS | 25.0% |
! | AAATTAAGTACCATGCAAAT+GGG | + | chr2.4:65390407-65390426 | MS.gene09535:CDS | 25.0% |
!! | TATGGATTACAATGACTTAA+TGG | + | chr2.4:65390243-65390262 | MS.gene09535:CDS | 25.0% |
!!! | CTTATAATCTTCTGTTGTTT+TGG | + | chr2.4:65390878-65390897 | MS.gene09535:intron | 25.0% |
!!! | GGATTTTTTATTGTTACAGA+AGG | + | chr2.4:65390556-65390575 | MS.gene09535:intron | 25.0% |
!!! | TGAGTTTTATATGGCTTATA+TGG | + | chr2.4:65390225-65390244 | MS.gene09535:CDS | 25.0% |
AAAGTAAACACAAAGCAAGT+TGG | - | chr2.4:65390768-65390787 | None:intergenic | 30.0% | |
AAGTAAACACAAAGCAAGTT+GGG | - | chr2.4:65390767-65390786 | None:intergenic | 30.0% | |
ACGAAATTGGGAAACAATTT+AGG | + | chr2.4:65390158-65390177 | MS.gene09535:CDS | 30.0% | |
GATTAAGCATCAAATCCAAA+TGG | - | chr2.4:65389810-65389829 | None:intergenic | 30.0% | |
GGAGTAAAGTCTATTTCAAT+AGG | - | chr2.4:65390445-65390464 | None:intergenic | 30.0% | |
TGAAGCTAATCAATATCTGA+AGG | + | chr2.4:65390644-65390663 | MS.gene09535:CDS | 30.0% | |
TTAATCTCTTGTTGAAACCA+TGG | + | chr2.4:65390345-65390364 | MS.gene09535:intron | 30.0% | |
! | CTTAATTTTATAGCTGCCTT+TGG | - | chr2.4:65390395-65390414 | None:intergenic | 30.0% |
!! | TACTAGCTGTGAGTTTTATA+TGG | + | chr2.4:65390216-65390235 | MS.gene09535:CDS | 30.0% |
AATATTCCCAAAGACTTGTC+GGG | + | chr2.4:65390618-65390637 | MS.gene09535:CDS | 35.0% | |
AATGGAAGGTAAGAAATCAC+AGG | - | chr2.4:65389961-65389980 | None:intergenic | 35.0% | |
AGAAGGATAGACATGATTGA+AGG | + | chr2.4:65390573-65390592 | MS.gene09535:intron | 35.0% | |
AGTAAACACAAAGCAAGTTG+GGG | - | chr2.4:65390766-65390785 | None:intergenic | 35.0% | |
ATGGAAGGTAAGAAATCACA+GGG | - | chr2.4:65389960-65389979 | None:intergenic | 35.0% | |
ATTCTTGAGGTTTCATGGTA+GGG | - | chr2.4:65390924-65390943 | None:intergenic | 35.0% | |
CAATATTCCCAAAGACTTGT+CGG | + | chr2.4:65390617-65390636 | MS.gene09535:CDS | 35.0% | |
CTTGTTGAAACCATGGATAT+AGG | + | chr2.4:65390352-65390371 | MS.gene09535:intron | 35.0% | |
GATAGACATGATTGAAGGAT+TGG | + | chr2.4:65390578-65390597 | MS.gene09535:CDS | 35.0% | |
GTTTCCCAATTTCGTAAACA+CGG | - | chr2.4:65390153-65390172 | None:intergenic | 35.0% | |
TCGTCATCATGAGTTACAAA+TGG | - | chr2.4:65390058-65390077 | None:intergenic | 35.0% | |
TGAAACCATGGATATAGGAA+TGG | + | chr2.4:65390357-65390376 | MS.gene09535:intron | 35.0% | |
TGAACCGTGTTTACGAAATT+GGG | + | chr2.4:65390146-65390165 | MS.gene09535:CDS | 35.0% | |
TTCTTACATTAGGAGATTCC+TGG | + | chr2.4:65389870-65389889 | MS.gene09535:CDS | 35.0% | |
! | ACAAGTCTTTGGGAATATTG+AGG | - | chr2.4:65390617-65390636 | None:intergenic | 35.0% |
!! | ACCTAGTCTTGAATATTTCC+CGG | - | chr2.4:65389840-65389859 | None:intergenic | 35.0% |
!!! | TCTGCATGCTGACTTTATTT+TGG | + | chr2.4:65390849-65390868 | MS.gene09535:intron | 35.0% |
AACTCACAGCTAGTAAACTC+AGG | - | chr2.4:65390211-65390230 | None:intergenic | 40.0% | |
AGACATGATTGAAGGATTGG+AGG | + | chr2.4:65390581-65390600 | MS.gene09535:CDS | 40.0% | |
ATGGTCAAGGAACTTACCAA+AGG | + | chr2.4:65390376-65390395 | MS.gene09535:CDS | 40.0% | |
CATGGATATAGGAATGGTCA+AGG | + | chr2.4:65390363-65390382 | MS.gene09535:intron | 40.0% | |
CATTCTTGAGGTTTCATGGT+AGG | - | chr2.4:65390925-65390944 | None:intergenic | 40.0% | |
CTGAACCGTGTTTACGAAAT+TGG | + | chr2.4:65390145-65390164 | MS.gene09535:CDS | 40.0% | |
CTTGACCATTCCTATATCCA+TGG | - | chr2.4:65390365-65390384 | None:intergenic | 40.0% | |
GGATTTGATGCTTAATCCAG+AGG | + | chr2.4:65389813-65389832 | MS.gene09535:CDS | 40.0% | |
GGGAAACAATTTAGGAACGA+GGG | + | chr2.4:65390166-65390185 | MS.gene09535:CDS | 40.0% | |
TAAGAGAGTGGCGAAAAAGT+GGG | - | chr2.4:65389986-65390005 | None:intergenic | 40.0% | |
TAAGTACCATGCAAATGGGA+CGG | + | chr2.4:65390411-65390430 | MS.gene09535:CDS | 40.0% | |
TCCGGGAAATATTCAAGACT+AGG | + | chr2.4:65389836-65389855 | MS.gene09535:CDS | 40.0% | |
TGGGAAACAATTTAGGAACG+AGG | + | chr2.4:65390165-65390184 | MS.gene09535:CDS | 40.0% | |
! | GTAAACACAAAGCAAGTTGG+GGG | - | chr2.4:65390765-65390784 | None:intergenic | 40.0% |
! | TAAACACAAAGCAAGTTGGG+GGG | - | chr2.4:65390764-65390783 | None:intergenic | 40.0% |
!!! | TCTTCTGTTGTTTTGGTGAC+AGG | + | chr2.4:65390885-65390904 | MS.gene09535:intron | 40.0% |
!!! | TGTGCATTTTTTGTCGCTGA+TGG | + | chr2.4:65390482-65390501 | MS.gene09535:intron | 40.0% |
AACTCCTTGAGACAGAGTTC+TGG | - | chr2.4:65390112-65390131 | None:intergenic | 45.0% | |
AAGATATCGGTCACGCCATT+TGG | + | chr2.4:65389792-65389811 | MS.gene09535:CDS | 45.0% | |
AGAACTCTGTCTCAAGGAGT+TGG | + | chr2.4:65390111-65390130 | MS.gene09535:CDS | 45.0% | |
ATAGCAGAGAACATGCTGAG+TGG | + | chr2.4:65390268-65390287 | MS.gene09535:CDS | 45.0% | |
CCAAGAAATCAAGCTTGTCC+AGG | - | chr2.4:65389891-65389910 | None:intergenic | 45.0% | |
CCTGGACAAGCTTGATTTCT+TGG | + | chr2.4:65389888-65389907 | MS.gene09535:CDS | 45.0% | |
CGAAAAAGTGGGTGAATGGA+AGG | - | chr2.4:65389975-65389994 | None:intergenic | 45.0% | |
CTAAGAGAGTGGCGAAAAAG+TGG | - | chr2.4:65389987-65390006 | None:intergenic | 45.0% | |
CTGAGTGGTGAGCATTTACT+AGG | + | chr2.4:65390283-65390302 | MS.gene09535:intron | 45.0% | |
GGACAAGCTTGATTTCTTGG+AGG | + | chr2.4:65389891-65389910 | MS.gene09535:CDS | 45.0% | |
GGCGTTTCAATCTAAGAGAG+TGG | - | chr2.4:65389998-65390017 | None:intergenic | 45.0% | |
TAGACTTTACTCCGCCATTC+AGG | + | chr2.4:65390452-65390471 | MS.gene09535:CDS | 45.0% | |
TCATCACCCGACAAGTCTTT+GGG | - | chr2.4:65390627-65390646 | None:intergenic | 45.0% | |
TGAAACAACTGCTCGTTTGC+TGG | + | chr2.4:65390704-65390723 | MS.gene09535:CDS | 45.0% | |
TGAAACGCCTATGATGAACG+TGG | + | chr2.4:65390009-65390028 | MS.gene09535:CDS | 45.0% | |
TGATGCTTAATCCAGAGGTC+CGG | + | chr2.4:65389818-65389837 | MS.gene09535:CDS | 45.0% | |
TTCATCACCCGACAAGTCTT+TGG | - | chr2.4:65390628-65390647 | None:intergenic | 45.0% | |
TTGAATATTTCCCGGACCTC+TGG | - | chr2.4:65389832-65389851 | None:intergenic | 45.0% | |
! | AAACACAAAGCAAGTTGGGG+GGG | - | chr2.4:65390763-65390782 | None:intergenic | 45.0% |
! | AAACGAGCAGTTGTTTCAGG+AGG | - | chr2.4:65390702-65390721 | None:intergenic | 45.0% |
! | AACGAGCAGTTGTTTCAGGA+GGG | - | chr2.4:65390701-65390720 | None:intergenic | 45.0% |
! | AACTGCTCGTTTGCTGGATA+AGG | + | chr2.4:65390710-65390729 | MS.gene09535:CDS | 45.0% |
! | AGCAAACGAGCAGTTGTTTC+AGG | - | chr2.4:65390705-65390724 | None:intergenic | 45.0% |
! | GTCTCAAGGAGTTGGTTGTT+GGG | + | chr2.4:65390119-65390138 | MS.gene09535:CDS | 45.0% |
! | TCTCAAGGAGTTGGTTGTTG+GGG | + | chr2.4:65390120-65390139 | MS.gene09535:CDS | 45.0% |
! | TGTCTCAAGGAGTTGGTTGT+TGG | + | chr2.4:65390118-65390137 | MS.gene09535:CDS | 45.0% |
!!! | TCTGTTGTTTTGGTGACAGG+AGG | + | chr2.4:65390888-65390907 | MS.gene09535:intron | 45.0% |
ATGATGAACGTGGTTGCTGG+TGG | + | chr2.4:65390019-65390038 | MS.gene09535:CDS | 50.0% | |
ATGCACACCACACACCTGAA+TGG | - | chr2.4:65390469-65390488 | None:intergenic | 50.0% | |
CCAGCAACCACGTTCATCAT+AGG | - | chr2.4:65390019-65390038 | None:intergenic | 50.0% | |
CCATATCCGTCCCATTTGCA+TGG | - | chr2.4:65390420-65390439 | None:intergenic | 50.0% | |
CCATGCAAATGGGACGGATA+TGG | + | chr2.4:65390417-65390436 | MS.gene09535:CDS | 50.0% | |
CCTATGATGAACGTGGTTGC+TGG | + | chr2.4:65390016-65390035 | MS.gene09535:CDS | 50.0% | |
GATGCTTAATCCAGAGGTCC+GGG | + | chr2.4:65389819-65389838 | MS.gene09535:CDS | 50.0% | |
GTGGCGAAAAAGTGGGTGAA+TGG | - | chr2.4:65389979-65389998 | None:intergenic | 50.0% | |
TGCTCCAGAACTCTGTCTCA+AGG | + | chr2.4:65390105-65390124 | MS.gene09535:CDS | 50.0% | |
! | AACACAAAGCAAGTTGGGGG+GGG | - | chr2.4:65390762-65390781 | None:intergenic | 50.0% |
! | ACGAGCAGTTGTTTCAGGAG+GGG | - | chr2.4:65390700-65390719 | None:intergenic | 50.0% |
! | CTCAAGGAGTTGGTTGTTGG+GGG | + | chr2.4:65390121-65390140 | MS.gene09535:CDS | 50.0% |
! | TCAAGGAGTTGGTTGTTGGG+GGG | + | chr2.4:65390122-65390141 | MS.gene09535:CDS | 50.0% |
CACACCACACACCTGAATGG+CGG | - | chr2.4:65390466-65390485 | None:intergenic | 55.0% | |
GAAGGATTGGAGGAGATCGC+AGG | + | chr2.4:65390591-65390610 | MS.gene09535:CDS | 55.0% | |
TACTCCGCCATTCAGGTGTG+TGG | + | chr2.4:65390459-65390478 | MS.gene09535:intron | 55.0% | |
! | ACACAAAGCAAGTTGGGGGG+GGG | - | chr2.4:65390761-65390780 | None:intergenic | 55.0% |
! | CGAGCAGTTGTTTCAGGAGG+GGG | - | chr2.4:65390699-65390718 | None:intergenic | 55.0% |
! | ACAAAGCAAGTTGGGGGGGG+GGG | - | chr2.4:65390759-65390778 | None:intergenic | 60.0% |
! | CACAAAGCAAGTTGGGGGGG+GGG | - | chr2.4:65390760-65390779 | None:intergenic | 60.0% |
! | AAAGCAAGTTGGGGGGGGGG+GGG | - | chr2.4:65390757-65390776 | None:intergenic | 65.0% |
! | CAAAGCAAGTTGGGGGGGGG+GGG | - | chr2.4:65390758-65390777 | None:intergenic | 65.0% |
! | AAGCAAGTTGGGGGGGGGGG+GGG | - | chr2.4:65390756-65390775 | None:intergenic | 70.0% |
! | AGCAAGTTGGGGGGGGGGGG+GGG | - | chr2.4:65390755-65390774 | None:intergenic | 75.0% |
! | AAGTTGGGGGGGGGGGGGGG+GGG | - | chr2.4:65390752-65390771 | None:intergenic | 80.0% |
!! | CAAGTTGGGGGGGGGGGGGG+GGG | - | chr2.4:65390753-65390772 | None:intergenic | 80.0% |
!! | GCAAGTTGGGGGGGGGGGGG+GGG | - | chr2.4:65390754-65390773 | None:intergenic | 80.0% |
! | AGTTGGGGGGGGGGGGGGGG+GGG | - | chr2.4:65390751-65390770 | None:intergenic | 85.0% |
! | GTTGGGGGGGGGGGGGGGGG+GGG | - | chr2.4:65390750-65390769 | None:intergenic | 90.0% |
! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr2.4:65390749-65390768 | None:intergenic | 90.0% |
! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr2.4:65390748-65390767 | None:intergenic | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 65389787 | 65390945 | 65389787 | ID=MS.gene09535 |
chr2.4 | mRNA | 65389787 | 65390945 | 65389787 | ID=MS.gene09535.t1;Parent=MS.gene09535 |
chr2.4 | exon | 65389787 | 65389912 | 65389787 | ID=MS.gene09535.t1.exon1;Parent=MS.gene09535.t1 |
chr2.4 | CDS | 65389787 | 65389912 | 65389787 | ID=cds.MS.gene09535.t1;Parent=MS.gene09535.t1 |
chr2.4 | exon | 65390007 | 65390289 | 65390007 | ID=MS.gene09535.t1.exon2;Parent=MS.gene09535.t1 |
chr2.4 | CDS | 65390007 | 65390289 | 65390007 | ID=cds.MS.gene09535.t1;Parent=MS.gene09535.t1 |
chr2.4 | exon | 65390374 | 65390473 | 65390374 | ID=MS.gene09535.t1.exon3;Parent=MS.gene09535.t1 |
chr2.4 | CDS | 65390374 | 65390473 | 65390374 | ID=cds.MS.gene09535.t1;Parent=MS.gene09535.t1 |
chr2.4 | exon | 65390575 | 65390731 | 65390575 | ID=MS.gene09535.t1.exon4;Parent=MS.gene09535.t1 |
chr2.4 | CDS | 65390575 | 65390731 | 65390575 | ID=cds.MS.gene09535.t1;Parent=MS.gene09535.t1 |
chr2.4 | exon | 65390907 | 65390945 | 65390907 | ID=MS.gene09535.t1.exon5;Parent=MS.gene09535.t1 |
chr2.4 | CDS | 65390907 | 65390945 | 65390907 | ID=cds.MS.gene09535.t1;Parent=MS.gene09535.t1 |
Gene Sequence |
Protein sequence |